Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 610 of 770
Found at i:190879714 original size:29 final size:29
Alignment explanation
Indices: 190879681--190879873 Score: 341
Period size: 29 Copynumber: 6.7 Consensus size: 29
190879671 CGAATGAATA
190879681 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
190879710 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
190879739 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
190879768 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
190879797 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
* *
190879826 GAGGCACTACGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
190879855 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
190879874 TTTTTCAACA
Statistics
Matches: 158, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 158 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:190882713 original size:27 final size:30
Alignment explanation
Indices: 190882659--190882715 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
190882649 AAATCCATAC
190882659 ATTTAATTTATTTCACATTTTAGTCCCTAA
1 ATTTAATTTATTTCACATTTTAGTCCCTAA
190882689 ATTTAAATTT-TTTCA-A-TTTAG-CCCTAA
1 ATTT-AATTTATTTCACATTTTAGTCCCTAA
190882716 TTACTCAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
27 6 0.23
28 5 0.19
29 1 0.04
30 9 0.35
31 5 0.19
ACGTcount: A:0.32, C:0.16, G:0.04, T:0.49
Consensus pattern (30 bp):
ATTTAATTTATTTCACATTTTAGTCCCTAA
Found at i:190890516 original size:30 final size:30
Alignment explanation
Indices: 190890482--190890578 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
190890472 AGCTCACTCC
*
190890482 TAGCTCATA-TTCAGCTCATGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
190890512 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
190890542 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
190890572 TAGCTCA
1 TAGCTCA
190890579 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:190893167 original size:5 final size:5
Alignment explanation
Indices: 190893148--190893221 Score: 62
Period size: 5 Copynumber: 14.0 Consensus size: 5
190893138 ACATTCTTGT
* *
190893148 AAAGA GAAAGC AAAGA AAAGA AAAGAA AAAGCA AAAGCA AAAGA AGA-A
1 AAAGA -AAAGA AAAGA AAAGA AAAG-A AAAG-A AAAG-A AAAGA AAAGA
190893196 AAAGA AAATGA AATA-A AAAGA AAAGA
1 AAAGA AAA-GA AA-AGA AAAGA AAAGA
190893222 GAGGCAAGAG
Statistics
Matches: 58, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
4 4 0.07
5 29 0.50
6 24 0.41
7 1 0.02
ACGTcount: A:0.74, C:0.04, G:0.19, T:0.03
Consensus pattern (5 bp):
AAAGA
Found at i:190893178 original size:21 final size:21
Alignment explanation
Indices: 190893148--190893219 Score: 69
Period size: 21 Copynumber: 3.4 Consensus size: 21
190893138 ACATTCTTGT
*
190893148 AAAGAGAAAGCAAAGAAAAGA
1 AAAGAAAAAGCAAAGAAAAGA
190893169 AAAGAAAAAGCAAAAGCAAAAG-
1 AAAGAAAAAGC-AAAG-AAAAGA
*
190893191 -AAGAAAAAGAAAATGAAATA-A
1 AAAGAAAAAGCAAA-GAAA-AGA
190893212 AAAGAAAA
1 AAAGAAAA
190893220 GAGAGGCAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
20 6 0.14
21 21 0.49
22 11 0.26
23 5 0.12
ACGTcount: A:0.75, C:0.04, G:0.18, T:0.03
Consensus pattern (21 bp):
AAAGAAAAAGCAAAGAAAAGA
Found at i:190893298 original size:12 final size:12
Alignment explanation
Indices: 190893290--190893314 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
190893280 TTTGAAAAGC
190893290 AAAAAGAAAATG
1 AAAAAGAAAATG
190893302 AAAAAGAAAATG
1 AAAAAGAAAATG
190893314 A
1 A
190893315 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:190893311 original size:18 final size:18
Alignment explanation
Indices: 190893284--190893339 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
190893274 AAAGCCTTTG
190893284 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
190893303 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
190893321 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
190893338 AA
1 AA
190893340 TCTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:190893324 original size:30 final size:31
Alignment explanation
Indices: 190893290--190893371 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
190893280 TTTGAAAAGC
*
190893290 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
190893320 AAAAAGAGAACG-AAAAGAAATCTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
190893350 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
190893372 TAAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.02, G:0.22, T:0.11
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:190895619 original size:30 final size:30
Alignment explanation
Indices: 190895585--190895681 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
190895575 AGCTCACTCC
190895585 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * * *
190895615 TAGCTCAACTTCAGTTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
190895645 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
190895675 TAGCTCA
1 TAGCTCA
190895682 TTTTATTTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
29 1 0.02
30 49 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:190896625 original size:20 final size:22
Alignment explanation
Indices: 190896580--190896628 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
190896570 GCCGAATTTA
190896580 TGAACTATTTTAATACATTAGTG
1 TGAAC-ATTTTAATACATTAGTG
*
190896603 TGAACATTTTAAT-TATT-GTG
1 TGAACATTTTAATACATTAGTG
190896623 TGAACA
1 TGAACA
190896629 CCTAGATGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 9 0.36
21 3 0.12
22 8 0.32
23 5 0.20
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.43
Consensus pattern (22 bp):
TGAACATTTTAATACATTAGTG
Found at i:190897577 original size:39 final size:39
Alignment explanation
Indices: 190897523--190897634 Score: 179
Period size: 39 Copynumber: 2.9 Consensus size: 39
190897513 TTCAGTGATG
190897523 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGAAT
* *
190897562 TATATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGAAT
* * *
190897601 TATATCCGGACTTAAGGTCTACAGGCTACGTGCT
1 TATATCCGGACTTAGGGTCCACAGGCTATGTGCT
190897635 AGAAATATGT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGAAT
Found at i:190899207 original size:68 final size:70
Alignment explanation
Indices: 190899135--190899332 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
190899125 ACACCCTGTA
* * * *
190899135 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
190899197 ATAAAT
65 ATAAAT
*
190899203 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
190899268 ATAAAT
65 ATAAAT
*
190899274 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
190899333 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:190899246 original size:41 final size:41
Alignment explanation
Indices: 190899201--190899318 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
190899191 TGAAAGATAA
190899201 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
190899242 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
190899272 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
190899313 ATGTAG
1 ATGTAG
190899319 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:190899258 original size:71 final size:71
Alignment explanation
Indices: 190899169--190899332 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
190899159 GAGATGTATC
190899169 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
190899234 AGGACA
66 AGGACA
190899240 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
190899305 AGGACA
66 AGGACA
190899311 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
190899333 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:190909629 original size:20 final size:20
Alignment explanation
Indices: 190909604--190909648 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
190909594 AGGGACTAAA
*
190909604 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
* *
190909624 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTATAAAATTTG
190909644 ATGAA
1 ATGAA
190909649 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:190925579 original size:34 final size:34
Alignment explanation
Indices: 190925536--190925604 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
190925526 CTCATCAAGT
* *
190925536 AATTCACATAATTACATATTATTCAATAATAACC
1 AATTCACATAATTACATACTATTCAACAATAACC
190925570 AATTCACATAATTACATACTATTCAACAATAACC
1 AATTCACATAATTACATACTATTCAACAATAACC
190925604 A
1 A
190925605 CAAAACATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (34 bp):
AATTCACATAATTACATACTATTCAACAATAACC
Found at i:190925613 original size:34 final size:34
Alignment explanation
Indices: 190925541--190925614 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
190925531 CAAGTAATTC
* * **
190925541 ACATAATTACATATTATTCAATAATAACCAATTC
1 ACATAATTACATACTATTCAACAATAACCAATAA
190925575 ACATAATTACATACTATTCAACAATAACCACA-AA
1 ACATAATTACATACTATTCAACAATAACCA-ATAA
190925609 ACATAA
1 ACATAA
190925615 CATTTCATGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 34 0.97
35 1 0.03
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.28
Consensus pattern (34 bp):
ACATAATTACATACTATTCAACAATAACCAATAA
Found at i:190926950 original size:14 final size:14
Alignment explanation
Indices: 190926931--190926960 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
190926921 GTTTCAACTT
190926931 ATAAATATGTGTTA
1 ATAAATATGTGTTA
*
190926945 ATAAATATGTTTTA
1 ATAAATATGTGTTA
190926959 AT
1 AT
190926961 CTGATTCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (14 bp):
ATAAATATGTGTTA
Found at i:190928110 original size:24 final size:26
Alignment explanation
Indices: 190928078--190928127 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
190928068 GCCGAATCTT
*
190928078 CATCCTCA-TTCACCTAGCC-ATTTC
1 CATCATCATTTCACCTAGCCAATTTC
*
190928102 CATCATCATTTCACTTAGCCAATTTC
1 CATCATCATTTCACCTAGCCAATTTC
190928128 AGCCCTTCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 10 0.45
26 5 0.23
ACGTcount: A:0.24, C:0.36, G:0.04, T:0.36
Consensus pattern (26 bp):
CATCATCATTTCACCTAGCCAATTTC
Found at i:190938590 original size:30 final size:30
Alignment explanation
Indices: 190938554--190938684 Score: 169
Period size: 30 Copynumber: 4.5 Consensus size: 30
190938544 GACAAGATTG
* * *
190938554 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
190938584 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
190938612 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
190938642 GCACTAAGTGTGCGAG-CTAAAAATATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
190938671 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
190938685 GATTCACTAT
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
28 23 0.26
29 24 0.27
30 42 0.47
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:190938645 original size:58 final size:59
Alignment explanation
Indices: 190938554--190938684 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 59
190938544 GACAAGATTG
* * * * *** *
190938554 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAG-TTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTAAAAATATATA
*
190938612 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTAAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTAAAAATATATA
190938671 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
190938685 GATTCACTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
58 41 0.65
59 22 0.35
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (59 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTAAAAATATATA
Found at i:190946040 original size:93 final size:93
Alignment explanation
Indices: 190945928--190946099 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
190945918 GCCCATAAGT
* *
190945928 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
190945993 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
190946021 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
190946086 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
190946100 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:190946095 original size:46 final size:46
Alignment explanation
Indices: 190945920--190946095 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
190945910 TGTAACCCGC
* * *
190945920 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
190945966 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
190946016 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
190946059 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
190946096 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:190948507 original size:30 final size:30
Alignment explanation
Indices: 190948463--190948551 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
190948453 CAAAGATAAC
190948463 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
190948492 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
190948522 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
190948552 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:190948511 original size:15 final size:15
Alignment explanation
Indices: 190948463--190948542 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
190948453 CAAAGATAAC
*
190948463 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
190948477 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
190948492 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
190948507 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
190948522 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
190948537 AAGAAA
1 AAGAAA
190948543 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:190948551 original size:15 final size:15
Alignment explanation
Indices: 190948474--190948551 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
190948464 AGAAAACCGA
190948474 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
190948489 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
190948503 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
190948518 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
190948534 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
190948549 ATA
1 ATA
190948552 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:190951607 original size:93 final size:93
Alignment explanation
Indices: 190951495--190951666 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
190951485 GCCCATAAGT
* *
190951495 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
190951560 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
190951588 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
190951653 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
190951667 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:190951662 original size:46 final size:46
Alignment explanation
Indices: 190951487--190951662 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
190951477 TGTAACCCGC
* * *
190951487 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
190951533 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
190951583 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
190951626 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
190951663 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:190955350 original size:40 final size:40
Alignment explanation
Indices: 190955284--190955449 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
190955274 AAATTGAATG
* * *
190955284 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
190955323 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
190955363 ATA-CCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
190955402 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
190955442 ATATCCGG
1 ATATCCGG
190955450 TTATATTCCG
Statistics
Matches: 103, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
38 3 0.03
39 41 0.40
40 57 0.55
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:190963349 original size:40 final size:40
Alignment explanation
Indices: 190963283--190963449 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
190963273 AAATTGAATG
* * *
190963283 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
190963322 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
190963362 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
190963402 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
190963442 ATATCCGG
1 ATATCCGG
190963450 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:190971348 original size:40 final size:40
Alignment explanation
Indices: 190971282--190971448 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
190971272 AAATTGAATG
* * *
190971282 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
190971321 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
190971361 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
190971401 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
190971441 ATATCCGG
1 ATATCCGG
190971449 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:190973039 original size:27 final size:26
Alignment explanation
Indices: 190973009--190973070 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 26
190972999 ATTTACTAAA
190973009 ATACCCCTAAGTATG-AAAATTACCACT
1 ATACCCCTAAG--TGCAAAATTACCACT
* *
190973036 ATACCCTTAAGTGCAAAATTACCATT
1 ATACCCCTAAGTGCAAAATTACCACT
190973062 ATACCCCTA
1 ATACCCCTA
190973071 GGGTTAGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.06
26 19 0.61
27 10 0.32
ACGTcount: A:0.39, C:0.27, G:0.06, T:0.27
Consensus pattern (26 bp):
ATACCCCTAAGTGCAAAATTACCACT
Found at i:190973220 original size:28 final size:28
Alignment explanation
Indices: 190973175--190973290 Score: 146
Period size: 28 Copynumber: 4.2 Consensus size: 28
190973165 GAAGGAAGCG
*
190973175 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
190973203 TTCTGGTGGCTCTACCACAAATATCTGA
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
190973231 TTCTGGTGGCACTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * *
190973259 ATCTGGTGACTCTGTCA-TAATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
190973285 TTCTGG
1 TTCTGG
190973291 CAGCCATATT
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
26 5 0.07
27 8 0.11
28 63 0.83
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:190982467 original size:48 final size:48
Alignment explanation
Indices: 190982415--190982510 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
190982405 CAAGCCTAGT
190982415 TAACCTAGGCATAAATATTAATTTTTCACTAATAATCAGCCTTTAATC
1 TAACCTAGGCATAAATATTAATTTTTCACTAATAATCAGCCTTTAATC
* *
190982463 TAACCTAGGTATAAATATTAATTTTTCACTACTAATCAGCCTTTAATC
1 TAACCTAGGCATAAATATTAATTTTTCACTAATAATCAGCCTTTAATC
190982511 ATCCTTCTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.36, C:0.19, G:0.06, T:0.39
Consensus pattern (48 bp):
TAACCTAGGCATAAATATTAATTTTTCACTAATAATCAGCCTTTAATC
Found at i:190991123 original size:40 final size:40
Alignment explanation
Indices: 190991049--190991194 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
190991039 CCGCACCAAG
* * * * * *
190991049 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
190991089 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
190991129 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
190991169 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
190991195 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:190991209 original size:40 final size:40
Alignment explanation
Indices: 190991081--190991232 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
190991071 ATCACGATTT
* * * * *
190991081 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
190991121 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
190991161 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
190991201 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
190991233 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:190999234 original size:40 final size:40
Alignment explanation
Indices: 190999160--190999305 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
190999150 CCGCACCAAG
* * * * * *
190999160 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
190999200 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
190999240 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
190999280 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
190999306 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:190999320 original size:40 final size:40
Alignment explanation
Indices: 190999192--190999343 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
190999182 ATCACGATTT
* * * * *
190999192 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
190999232 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
190999272 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
190999312 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
190999344 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:191003043 original size:12 final size:13
Alignment explanation
Indices: 191003015--191003047 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
191003005 TTATTTCTTT
191003015 TTCTCCATCTACC
1 TTCTCCATCTACC
*
191003028 TTCTCC-TCTTCC
1 TTCTCCATCTACC
191003040 TTCTCCAT
1 TTCTCCAT
191003048 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:191005250 original size:29 final size:27
Alignment explanation
Indices: 191005216--191005318 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
191005206 TACTCAATCA
*
191005216 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
191005245 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
191005274 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
191005303 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
191005319 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:191006840 original size:8 final size:8
Alignment explanation
Indices: 191006827--191006856 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
191006817 CTAGATCGGC
191006827 AAAAGCCG
1 AAAAGCCG
191006835 AAAAGCCG
1 AAAAGCCG
*
191006843 AAATGCCG
1 AAAAGCCG
191006851 AAAAGC
1 AAAAGC
191006857 TGGTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:191007127 original size:28 final size:28
Alignment explanation
Indices: 191007087--191007175 Score: 153
Period size: 28 Copynumber: 3.2 Consensus size: 28
191007077 TGTACTAGAG
191007087 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
191007115 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATTACCATTA
*
191007143 TACCCCTATGTATGCAAAATGACC-TCTA
1 TACCCCTATGTATGCAAAATTACCAT-TA
191007171 TACCC
1 TACCC
191007176 TTAGGGTTAA
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
27 1 0.02
28 58 0.98
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATTACCATTA
Found at i:191007325 original size:28 final size:27
Alignment explanation
Indices: 191007284--191007373 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 27
191007274 AGGAAGCGTC
*
191007284 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGCAATGCCACAAA-TATCTGTT
** **
191007312 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCAATGCCACAAATATCTGTT
*
191007339 CTGGTGGCATTGCCACAAAATATCTGTAT
1 CTGGTGGCAATGCCAC-AAATATCTGT-T
191007368 CTGGTG
1 CTGGTG
191007374 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCAATGCCACAAATATCTGTT
Found at i:191007342 original size:27 final size:28
Alignment explanation
Indices: 191007284--191007373 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
191007274 AGGAAGCGTC
*
191007284 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
191007312 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
*
191007339 CTGGTGGCATTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
191007368 CTGGTG
1 CTGGTG
191007374 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:191007392 original size:55 final size:56
Alignment explanation
Indices: 191007284--191007398 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
191007274 AGGAAGCGTC
* * *
191007284 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
191007339 CTGGTGGC-ATTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
191007395 CTGG
1 CTGG
191007399 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:191007863 original size:19 final size:19
Alignment explanation
Indices: 191007839--191007877 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
191007829 TTTTAATTAT
* *
191007839 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
191007858 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
191007877 T
1 T
191007878 ATATGAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:191009856 original size:21 final size:22
Alignment explanation
Indices: 191009830--191009873 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
191009820 ATTTTATTAA
* *
191009830 TAATTAATACTT-ATTGAAATG
1 TAATTAAAACTTAATTAAAATG
191009851 TAATTAAAACTTAATTAAAATG
1 TAATTAAAACTTAATTAAAATG
191009873 T
1 T
191009874 TTATATTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.41
Consensus pattern (22 bp):
TAATTAAAACTTAATTAAAATG
Found at i:191030681 original size:7 final size:7
Alignment explanation
Indices: 191030669--191030707 Score: 60
Period size: 7 Copynumber: 5.4 Consensus size: 7
191030659 GGCATACAAA
191030669 GGTTTAG
1 GGTTTAG
191030676 GGTTTAG
1 GGTTTAG
*
191030683 GATTTAG
1 GGTTTAG
191030690 GGTTTTAG
1 GG-TTTAG
191030698 GGTTTAG
1 GGTTTAG
191030705 GGT
1 GGT
191030708 AAGTGTTTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 22 0.76
8 7 0.24
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (7 bp):
GGTTTAG
Found at i:191030698 original size:15 final size:15
Alignment explanation
Indices: 191030671--191030707 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
191030661 CATACAAAGG
191030671 TTTAGGG-TTTAGGA
1 TTTAGGGTTTTAGGA
*
191030685 TTTAGGGTTTTAGGG
1 TTTAGGGTTTTAGGA
191030700 TTTAGGGT
1 TTTAGGGT
191030708 AAGTGTTTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.00, G:0.38, T:0.46
Consensus pattern (15 bp):
TTTAGGGTTTTAGGA
Found at i:191032932 original size:239 final size:238
Alignment explanation
Indices: 191032496--191032973 Score: 821
Period size: 239 Copynumber: 2.0 Consensus size: 238
191032486 AGCCTAAGAC
191032496 ACACGGCCACGTGACTAGTCGTATGTCCCCTTTAGGTTTTTAAAGGTTGCATTTCGAGAGTGACA
1 ACACGGCCACGTGACTAGTCGTATGTCCCCTTTAGGTTTTTAAAGGTTGCATTTCGAGAGTGACA
*
191032561 CGGCCTGGCACACGGGTGTGTGACTTGGCTGTGTAACCCAAGTCAGAGAGTTACACGGGCACGGA
66 CGGCCTGACACACGGGTGTGTGACTTGGCTGTGTAACCCAAGTCAGAGAGTTACACGGGCACGGA
* * *
191032626 CACGGGCTGGGATATGGTCGTGTGTCCCTACTTTGAACGCCTACACGGCTTGAGACACAAGCATG
131 CACGGGCTGGGATATGGTCGTGTGTCCCTACTTTGAACACCCACACGGCCTGAGACACAAGCATG
191032691 TGTCTCAATGCTGTGAGTCATAAGGCTGTGTGATCCCTGTAGT
196 TGTCTCAATGCTGTGAGTCATAAGGCTGTGTGATCCCTGTAGT
*
191032734 ACACGGCCACGTGACATGGTCGTATGTCCCCTTTAGGTTTTTAAAGGTTGCATTTCGAGAGTGAC
1 ACACGGCCACGTGAC-TAGTCGTATGTCCCCTTTAGGTTTTTAAAGGTTGCATTTCGAGAGTGAC
*
191032799 ATGGCCTGACACACGGGTGTGTGACTTGGCTGTGTAACCCAAGTCAGAGAGTTACACGGGCACGG
65 ACGGCCTGACACACGGGTGTGTGACTTGGCTGTGTAACCCAAGTCAGAGAGTTACACGGGCACGG
* * * *
191032864 ACATGGGCTGGGATATTGTCGTGTGTCCCTACTTTGAATACCCACACGGCCTGAGACACGAGCAT
130 ACACGGGCTGGGATATGGTCGTGTGTCCCTACTTTGAACACCCACACGGCCTGAGACACAAGCAT
* * * *
191032929 GTGTCTCAGTGTTGTGAGTCATAAGGTTGTGTGATCCTTGTAGT
195 GTGTCTCAATGCTGTGAGTCATAAGGCTGTGTGATCCCTGTAGT
191032973 A
1 A
191032974 TTAATTTTTC
Statistics
Matches: 225, Mismatches: 14, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
238 15 0.07
239 210 0.93
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (238 bp):
ACACGGCCACGTGACTAGTCGTATGTCCCCTTTAGGTTTTTAAAGGTTGCATTTCGAGAGTGACA
CGGCCTGACACACGGGTGTGTGACTTGGCTGTGTAACCCAAGTCAGAGAGTTACACGGGCACGGA
CACGGGCTGGGATATGGTCGTGTGTCCCTACTTTGAACACCCACACGGCCTGAGACACAAGCATG
TGTCTCAATGCTGTGAGTCATAAGGCTGTGTGATCCCTGTAGT
Found at i:191034282 original size:17 final size:16
Alignment explanation
Indices: 191034262--191034305 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
191034252 TTCCATGCCA
*
191034262 GAAAAAAGTGTAGAAGT
1 GAAAAAAAT-TAGAAGT
*
191034279 GAAAAAAATTCGAAGT
1 GAAAAAAATTAGAAGT
191034295 GAAAAACAATT
1 GAAAAA-AATT
191034306 TTGAAAAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 12 0.50
17 12 0.50
ACGTcount: A:0.57, C:0.05, G:0.20, T:0.18
Consensus pattern (16 bp):
GAAAAAAATTAGAAGT
Found at i:191034293 original size:16 final size:17
Alignment explanation
Indices: 191034274--191034305 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
191034264 AAAAAGTGTA
191034274 GAAGTGAAAAA-AATTC
1 GAAGTGAAAAACAATTC
191034290 GAAGTGAAAAACAATT
1 GAAGTGAAAAACAATT
191034306 TTGAAAAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (17 bp):
GAAGTGAAAAACAATTC
Found at i:191034469 original size:21 final size:18
Alignment explanation
Indices: 191034434--191034481 Score: 51
Period size: 21 Copynumber: 2.5 Consensus size: 18
191034424 AAGAAATTGA
191034434 AAAAAGAAAAAGAGTATGAG
1 AAAAAGAAAAAGAGT-T-AG
**
191034454 AGAAAAGAAATTGAGTTAG
1 A-AAAAGAAAAAGAGTTAG
191034473 AAAAAGAAA
1 AAAAAGAAA
191034482 GTGAACATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 8 0.32
19 3 0.12
20 2 0.08
21 12 0.48
ACGTcount: A:0.65, C:0.00, G:0.23, T:0.12
Consensus pattern (18 bp):
AAAAAGAAAAAGAGTTAG
Found at i:191035944 original size:17 final size:18
Alignment explanation
Indices: 191035918--191035956 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
191035908 TAGAGGGTTC
*
191035918 TTTTCCTTTA-GTTTTTA
1 TTTTCCTTTAGGTGTTTA
*
191035935 TTTTCTTTTAGGTGTTTA
1 TTTTCCTTTAGGTGTTTA
191035953 TTTT
1 TTTT
191035957 TATTTCTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.10, C:0.08, G:0.10, T:0.72
Consensus pattern (18 bp):
TTTTCCTTTAGGTGTTTA
Found at i:191039794 original size:20 final size:20
Alignment explanation
Indices: 191039748--191039794 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
191039738 AAGAACCAAA
191039748 TTGAGCTCAAACGAGCTGAG
1 TTGAGCTCAAACGAGCTGAG
* * * *
191039768 ATAAGCTCAAATGAGCTGAT
1 TTGAGCTCAAACGAGCTGAG
191039788 TTGAGCT
1 TTGAGCT
191039795 TAATGGAGCT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (20 bp):
TTGAGCTCAAACGAGCTGAG
Found at i:191042146 original size:17 final size:18
Alignment explanation
Indices: 191042111--191042146 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
191042101 CCCAAAATCT
*
191042111 ACACGCCCGTGTAGGCCC
1 ACACGCCCGTATAGGCCC
191042129 ACACGCCCGTAT-GGCCC
1 ACACGCCCGTATAGGCCC
191042146 A
1 A
191042147 TAAGCCCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.19, C:0.44, G:0.25, T:0.11
Consensus pattern (18 bp):
ACACGCCCGTATAGGCCC
Found at i:191046257 original size:47 final size:47
Alignment explanation
Indices: 191046176--191046305 Score: 179
Period size: 47 Copynumber: 2.8 Consensus size: 47
191046166 ATAATCGATT
* * *
191046176 AGTACCCATACCATGGCCCATAGCCAAATAAAGGTAACTTATCTCAG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCCCAG
* * *
191046223 AGTAGCTATACCATGGCCCATATCCAAATCAAGGTAACTTATCCCGG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCCCAG
* * *
191046270 AGTACCTACAGCATGGCCCGTAGCCAAATCAAGGTA
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
191046306 TCTCCTTCCA
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.21
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCCCAG
Found at i:191054011 original size:71 final size:71
Alignment explanation
Indices: 191053927--191054090 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
191053917 CGATTTGTCT
191053927 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
191053992 CTTTCA
66 CTTTCA
* *
191053998 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
191054063 CTTTCA
66 CTTTCA
191054069 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
191054091 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:191054128 original size:71 final size:70
Alignment explanation
Indices: 191053927--191054124 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
191053917 CGATTTGTCT
* * * * *
191053927 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
191053992 CTTTCA
65 CTTTCA
* * * *
191053998 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
191054063 CTTTCA
65 CTTTCA
* *
191054069 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
191054125 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:191062454 original size:39 final size:39
Alignment explanation
Indices: 191062386--191062490 Score: 192
Period size: 39 Copynumber: 2.7 Consensus size: 39
191062376 CCGCACAAAG
*
191062386 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
191062426 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
191062465 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
191062491 TCGAACATTC
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
39 55 0.86
40 9 0.14
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:191070444 original size:39 final size:39
Alignment explanation
Indices: 191070360--191070512 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
191070350 TATGGTAACC
** * *
191070360 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
191070400 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
191070439 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
191070478 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
191070513 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:191070485 original size:78 final size:79
Alignment explanation
Indices: 191070329--191070511 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
191070319 TCGTTCAAAC
* * **
191070329 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
191070394 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
191070409 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
191070473 CAATTTGCACAATT
66 CAATTTGCACAATT
191070487 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
191070512 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:191073357 original size:39 final size:39
Alignment explanation
Indices: 191073314--191073403 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
191073304 CTTTAACCCG
* *
191073314 GATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCA
1 GATATATTTCCAGCACATAGCCTGCGGACCTCAAGTCCA
* * *
191073353 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCG
1 GATATATTTCCAGCACATAGCCTGCGGACCTCAAGTCCA
191073392 GATATATTTCCA
1 GATATATTTCCA
191073404 ATCTCATATA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (39 bp):
GATATATTTCCAGCACATAGCCTGCGGACCTCAAGTCCA
Found at i:191081317 original size:39 final size:39
Alignment explanation
Indices: 191081274--191081365 Score: 123
Period size: 38 Copynumber: 2.4 Consensus size: 39
191081264 GGTCTTTAAC
* *
191081274 CCGGATATTTTTCCAGCACGTAGCCTGCAGACCTCAAGT
1 CCGGATATATTTCCAGCACATAGCCTGCAGACCTCAAGT
* * *
191081313 CCGGATATATTT-CAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCACATAGCCTGCAGACCTCAAGT
*
191081351 CTGGATATATTTCCA
1 CCGGATATATTTCCA
191081366 ATGTCTGGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 33 0.72
39 13 0.28
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (39 bp):
CCGGATATATTTCCAGCACATAGCCTGCAGACCTCAAGT
Found at i:191081371 original size:19 final size:19
Alignment explanation
Indices: 191081347--191081384 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
191081337 TGCGGACCTC
191081347 ATGTCTGGATATATTTCCA
1 ATGTCTGGATATATTTCCA
191081366 ATGTCTGGATATATTTCCA
1 ATGTCTGGATATATTTCCA
191081385 GCATATAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (19 bp):
ATGTCTGGATATATTTCCA
Found at i:191081407 original size:57 final size:57
Alignment explanation
Indices: 191081315--191081422 Score: 191
Period size: 57 Copynumber: 1.9 Consensus size: 57
191081305 CCTCAAGTCC
*
191081315 GGATATATTTCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTTCCAATGTCT
1 GGATATATTTCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTTCCAATGTCT
191081372 GGATATATTTCCAGCATATAGCCTGCGGA-CTCATGTCCGGATATATTTCCA
1 GGATATATTT-CAGCATATAGCCTGCGGACCTCATGTCCGGATATATTTCCA
191081423 GCATATAGCA
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
57 31 0.63
58 18 0.37
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (57 bp):
GGATATATTTCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTTCCAATGTCT
Found at i:191081417 original size:38 final size:39
Alignment explanation
Indices: 191081366--191081461 Score: 149
Period size: 38 Copynumber: 2.5 Consensus size: 39
191081356 TATATTTCCA
*
191081366 ATGTCTGGATATATTTCCAGCATATAGCCTGCGGA-CTC
1 ATGTCTGGATATATTTCCAGCATATAGCATGCGGACCTC
* *
191081404 ATGTCCGGATATATTTCCAGCATATAGCATGTGGACCTC
1 ATGTCTGGATATATTTCCAGCATATAGCATGCGGACCTC
*
191081443 ATGTCTAGATATATTTCCA
1 ATGTCTGGATATATTTCCA
191081462 ATCTCATATA
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
38 32 0.62
39 20 0.38
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (39 bp):
ATGTCTGGATATATTTCCAGCATATAGCATGCGGACCTC
Found at i:191081440 original size:96 final size:96
Alignment explanation
Indices: 191081276--191081463 Score: 288
Period size: 96 Copynumber: 2.0 Consensus size: 96
191081266 TCTTTAACCC
* * *
191081276 GGATATTTTTCCAGCACGTAGCCTGCAGACCTCAAGTCCGGATATATTTCAGCATATAGCCTGCG
1 GGATATATTTCCAGCACATAGCCTGCAGACCTCAAGTCCGGATATATTTCAGCATATAGCATGCG
*
191081341 GACCTCATGTCTGGATATATTTCCAATGTCT
66 GACCTCATGTCTAGATATATTTCCAATGTCT
* * * *
191081372 GGATATATTTCCAGCATATAGCCTGCGGA-CTCATGTCCGGATATATTTCCAGCATATAGCATGT
1 GGATATATTTCCAGCACATAGCCTGCAGACCTCAAGTCCGGATATATTT-CAGCATATAGCATGC
191081436 GGACCTCATGTCTAGATATATTTCCAAT
65 GGACCTCATGTCTAGATATATTTCCAAT
191081464 CTCATATATA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
95 18 0.22
96 65 0.78
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (96 bp):
GGATATATTTCCAGCACATAGCCTGCAGACCTCAAGTCCGGATATATTTCAGCATATAGCATGCG
GACCTCATGTCTAGATATATTTCCAATGTCT
Found at i:191085217 original size:30 final size:29
Alignment explanation
Indices: 191085123--191085224 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
191085113 TATAGTGAAT
* * *
191085123 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
191085152 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
191085180 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
191085210 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
191085225 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:191093064 original size:30 final size:29
Alignment explanation
Indices: 191092970--191093071 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
191092960 TATAGTGAAT
* * *
191092970 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
191092999 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
191093027 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
191093057 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
191093072 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:191095096 original size:28 final size:29
Alignment explanation
Indices: 191094987--191095100 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
191094977 GTGAGCATGA
* *
191094987 ATATGAATGTGA-CTGGG-CTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
191095014 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
**
191095043 ATAT-ACCGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
191095072 ATATGAATATGA-TTGGGCGTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
191095100 A
1 A
191095101 GATACAGGTA
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
27 11 0.15
28 21 0.28
29 41 0.55
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:191098019 original size:29 final size:28
Alignment explanation
Indices: 191097987--191098089 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
191097977 GTGACGAGAT
* *
191097987 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
191098016 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
191098045 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
191098074 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
191098090 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:191105787 original size:29 final size:28
Alignment explanation
Indices: 191105755--191105857 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
191105745 GTGACGAGAT
* *
191105755 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
191105784 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
191105813 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
191105842 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
191105858 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:191111251 original size:42 final size:42
Alignment explanation
Indices: 191111184--191111321 Score: 140
Period size: 42 Copynumber: 3.2 Consensus size: 42
191111174 CGAAAATCCT
* *
191111184 AGACGTGATCTTACATGTAATCAAATTCGATGAC-ACTGTCCC
1 AGACGTGGTCTTACATGAAATCAAATTCGATGACAAC-GTCCC
*
191111226 AGACAG-GGTCTTACATGAAATCAAATAT-GAT-ACCAACGTCTC
1 AGAC-GTGGTCTTACATGAAATCAAAT-TCGATGA-CAACGTCCC
* *
191111268 AGACGTGGTCTTACATGTAAATCATAAGTCGATGCCAACGTCCC
1 AGACGTGGTCTTACATG-AAATCA-AATTCGATGACAACGTCCC
*
191111312 AGATGTGGTC
1 AGACGTGGTC
191111322 CTGTATGATA
Statistics
Matches: 80, Mismatches: 7, Indels: 16
0.78 0.07 0.16
Matches are distributed among these distances:
41 2 0.03
42 45 0.56
43 11 0.14
44 22 0.28
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (42 bp):
AGACGTGGTCTTACATGAAATCAAATTCGATGACAACGTCCC
Found at i:191115870 original size:19 final size:20
Alignment explanation
Indices: 191115842--191115882 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
191115832 TACGATCTCT
*
191115842 AAAATCTATA-AAACAAAGA
1 AAAATATATACAAACAAAGA
*
191115861 AAAATATATACACACAAAGA
1 AAAATATATACAAACAAAGA
191115881 AA
1 AA
191115883 GCTAACTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.68, C:0.12, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAATATATACAAACAAAGA
Found at i:191118311 original size:27 final size:27
Alignment explanation
Indices: 191117861--191118312 Score: 564
Period size: 27 Copynumber: 16.7 Consensus size: 27
191117851 TTAGTTTACC
*
191117861 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
191117888 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
191117915 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
191117942 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
191117969 AAATTACTAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
191117996 AAATCACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
191118023 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
191118050 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
191118077 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
191118104 AAATTACTAAAATACCCTTTGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
191118131 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
191118158 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** *
191118185 AAATTATTAAAATACTCC-TAGTTTGTA
1 AAATTACCAAAATAC-CCTTGGTTTGTA
* * *
191118212 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
191118239 AAATTACCAAAATATCCTTGGTTGGCA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
191118266 AAATTACTAAAATATCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
**
191118293 AAATTACTGAAATACCCTTG
1 AAATTACCAAAATACCCTTG
191118313 TAGGGTAGAA
Statistics
Matches: 372, Mismatches: 51, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 2 0.01
27 368 0.99
28 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:191118312 original size:54 final size:54
Alignment explanation
Indices: 191117861--191118309 Score: 628
Period size: 54 Copynumber: 8.3 Consensus size: 54
191117851 TTAGTTTACC
191117861 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
191117915 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * *
191117969 AAATTACTAAAATACCCCTGGTTTATAAAATCACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
191118023 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* *
191118077 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
191118131 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
** * * *
191118185 AAATTATTAAAATACTCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * * * * * *
191118239 AAATTACCAAAATATCCTTGGTTGGCAAAATTACTAAAATATCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
**
191118293 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
191118310 TTGTAGGGTA
Statistics
Matches: 346, Mismatches: 49, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 346 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.33
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:191118324 original size:27 final size:27
Alignment explanation
Indices: 191118294--191118648 Score: 434
Period size: 27 Copynumber: 13.2 Consensus size: 27
191118284 TGATTTGTGA
*
191118294 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
191118321 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
191118348 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
191118375 AATTA-TCGCAACACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
191118402 AATTAC-CAGAATACCCCTGTAGGGTAG
1 AATTACTGA-AATACCCCTGTAGGGTAG
* *
191118429 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
191118456 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
191118483 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
191118510 AATTACTGAAATACCCTTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
191118537 AATTA-TCGCTATACCCTTGTA-GGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
191118563 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
191118590 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
191118617 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
191118643 AATTAC
1 AATTAC
191118649 CATTTTGCCC
Statistics
Matches: 291, Mismatches: 30, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
26 38 0.13
27 253 0.87
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:191119127 original size:22 final size:22
Alignment explanation
Indices: 191119075--191119139 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
191119065 TTAAAGCCTT
* *
191119075 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
191119097 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
191119119 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
191119140 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:191119328 original size:27 final size:27
Alignment explanation
Indices: 191119298--191119399 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
191119288 ATTCTGTTAA
* *
191119298 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
191119325 GTGGCTATGCCACAAATATCTG-TTCTA
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
191119352 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
191119379 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
191119400 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.77
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:191119355 original size:54 final size:53
Alignment explanation
Indices: 191119297--191119399 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 53
191119287 TATTCTGTTA
* * * *
191119297 AGTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCT
1 AGTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCAC-AATATCTGTTCT
* *
191119351 AGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTG
1 AGTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTG
191119400 ATAACTGAGC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 8 0.19
54 35 0.81
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (53 bp):
AGTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTGTTCT
Found at i:191119576 original size:6 final size:6
Alignment explanation
Indices: 191119565--191119655 Score: 62
Period size: 6 Copynumber: 14.8 Consensus size: 6
191119555 TTACCTAATA
* * *
191119565 CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT TTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT
* * *
191119614 ATG-TCAC CTGATT CTGATT CTGATT CTAATT CT-AGTT CTGAT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
191119656 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:191119582 original size:31 final size:31
Alignment explanation
Indices: 191119536--191119647 Score: 125
Period size: 31 Copynumber: 3.6 Consensus size: 31
191119526 TTGCATTCAC
* *
191119536 ATTCTGATTTTTGATTCTATTACCTAATACTG
1 ATTCTGA-TTCTGATTCTATTACCTGATACTG
* *
191119568 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTATTACCTGATACTG
* * * * *
191119599 ATTTTGATTCTGATTATGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTATTACCTGATACTG
*
191119630 ATTCTGATTCTAATTCTA
1 ATTCTGATTCTGATTCTA
191119648 GTTCTGATAA
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
31 62 0.90
32 7 0.10
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATTACCTGATACTG
Found at i:191119624 original size:25 final size:25
Alignment explanation
Indices: 191119563--191119638 Score: 86
Period size: 25 Copynumber: 3.0 Consensus size: 25
191119553 TATTACCTAA
*
191119563 TACTGATTCTGATTTTGATTCTG-T
1 TACTGATACTGATTTTGATTCTGAT
191119587 TACCTGATACTGATTTTGATTCTGAT
1 TA-CTGATACTGATTTTGATTCTGAT
*
191119613 TA-TG-TCACCTGATTCTGATTCTGAT
1 TACTGAT-A-CTGATTTTGATTCTGAT
191119638 T
1 T
191119639 CTAATTCTAG
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
23 1 0.02
24 5 0.11
25 37 0.80
26 3 0.07
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.49
Consensus pattern (25 bp):
TACTGATACTGATTTTGATTCTGAT
Found at i:191122618 original size:29 final size:29
Alignment explanation
Indices: 191122585--191122745 Score: 223
Period size: 29 Copynumber: 5.6 Consensus size: 29
191122575 GTGACGAGAT
191122585 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
191122614 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
191122643 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
191122672 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ** *
191122701 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
191122730 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
191122746 AGCTCGAAGG
Statistics
Matches: 120, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 120 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:191122773 original size:87 final size:87
Alignment explanation
Indices: 191122581--191122765 Score: 219
Period size: 87 Copynumber: 2.1 Consensus size: 87
191122571 TATGGTGACG
* * * ** * *
191122581 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATG
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
* *
191122645 GCACTAAGTGTGCGTGCTGGAA
66 GCACTAAGTGTGCGAGCTCGAA
* * *
191122667 ATATAAGGCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAGCTGGAAAAATACG
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
**
191122732 GCACTGGGTGTGCGAGCTCGAA
66 GCACTAAGTGTGCGAGCTCGAA
* *
191122754 GGGTATGGCACT
1 AGATATGGCACT
191122766 GTGTGTGCGG
Statistics
Matches: 80, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
86 3 0.04
87 77 0.96
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.24
Consensus pattern (87 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
GCACTAAGTGTGCGAGCTCGAA
Found at i:191130493 original size:29 final size:29
Alignment explanation
Indices: 191130427--191130585 Score: 205
Period size: 29 Copynumber: 5.6 Consensus size: 29
191130417 GTGACGAGAT
191130427 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
191130456 TGG--CTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
191130483 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
191130512 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ** *
191130541 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
191130570 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
191130586 AGCTCGAAGG
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
27 27 0.23
29 89 0.77
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:191130604 original size:87 final size:85
Alignment explanation
Indices: 191130423--191130605 Score: 197
Period size: 87 Copynumber: 2.1 Consensus size: 85
191130413 TATGGTGACG
* * * ** * *
191130423 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCTAAGTGTGCGTGCTGGAAATATATGGC
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACTAAGTGTGCAAGCTGGAAAAATACGGC
* *
191130487 ACTAAGTGTGCGTGCTGGAA
66 ACTAAGTGTGCGAGCTCGAA
* * *
191130507 ATATAAGGCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAGCTGGAAAAATACG
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATG--ACTAAGTGTGCAAGCTGGAAAAATACG
**
191130572 GCACTGGGTGTGCGAGCTCGAA
64 GCACTAAGTGTGCGAGCTCGAA
* *
191130594 GGGTATGGCACT
1 AGATATGGCACT
191130606 GTGTGTGCGG
Statistics
Matches: 78, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
84 3 0.04
85 28 0.36
87 47 0.60
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.25
Consensus pattern (85 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACTAAGTGTGCAAGCTGGAAAAATACGGC
ACTAAGTGTGCGAGCTCGAA
Found at i:191138324 original size:27 final size:28
Alignment explanation
Indices: 191138267--191138336 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
191138257 AAATTTGTAC
**
191138267 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
191138295 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
191138322 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
191138337 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:191138345 original size:27 final size:27
Alignment explanation
Indices: 191138267--191138348 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
191138257 AAATTTGTAC
* *
191138267 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
191138295 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
191138322 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
191138349 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:191146387 original size:27 final size:28
Alignment explanation
Indices: 191146330--191146399 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
191146320 AAATTTGTAC
**
191146330 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
191146358 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
191146385 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
191146400 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:191146408 original size:27 final size:27
Alignment explanation
Indices: 191146330--191146411 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
191146320 AAATTTGTAC
* *
191146330 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
191146358 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
191146385 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
191146412 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:191154458 original size:27 final size:28
Alignment explanation
Indices: 191154401--191154470 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
191154391 AAATTTGTAC
**
191154401 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
191154429 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
191154456 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
191154471 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:191154479 original size:27 final size:27
Alignment explanation
Indices: 191154401--191154482 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
191154391 AAATTTGTAC
* *
191154401 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
191154429 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
191154456 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
191154483 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:191159873 original size:46 final size:46
Alignment explanation
Indices: 191159806--191159934 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
191159796 TGTAACCCGC
* * *
191159806 CCATAAGCGAACTCAGG-CTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTC-GGACTCAACTCAACGAGCTCGGACATTCGCAT
191159852 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
191159898 CCATAAGTGAACTCGGACTCGACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
191159935 TGCCCAAATA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.03
46 76 0.97
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:191165474 original size:11 final size:11
Alignment explanation
Indices: 191165454--191165486 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
191165444 GTAATGATAT
*
191165454 AGCACACTTCA
1 AGCACTCTTCA
191165465 AGCACTCTTCA
1 AGCACTCTTCA
191165476 AGCACTCTTCA
1 AGCACTCTTCA
191165487 GGTGTACAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.24
Consensus pattern (11 bp):
AGCACTCTTCA
Found at i:191170262 original size:15 final size:15
Alignment explanation
Indices: 191170242--191170310 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
191170232 GTATCTTGGG
191170242 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
191170257 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
191170272 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
191170287 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
191170302 TTTCTTTAT
1 TTTCTTTAT
191170311 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:191170311 original size:30 final size:30
Alignment explanation
Indices: 191170233--191170320 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
191170223 CATAGTATCG
* * * *
191170233 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
191170263 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
191170293 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
191170321 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:191172752 original size:46 final size:46
Alignment explanation
Indices: 191172702--191172877 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
191172692 TATTTGGGCA
191172702 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
191172748 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
191172795 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
191172841 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
191172878 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:191172857 original size:93 final size:93
Alignment explanation
Indices: 191172698--191172869 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
191172688 TGGATATTTG
* *
191172698 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
191172763 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
191172791 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
191172856 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
191172870 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:191175842 original size:15 final size:15
Alignment explanation
Indices: 191175822--191175890 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
191175812 GTATCTTGGG
191175822 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
191175837 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
191175852 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
191175867 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
191175882 TTTCTTTAT
1 TTTCTTTAT
191175891 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:191175891 original size:30 final size:30
Alignment explanation
Indices: 191175813--191175900 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
191175803 CATAGTATCG
* * * *
191175813 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
191175843 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
191175873 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
191175901 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:191178336 original size:46 final size:46
Alignment explanation
Indices: 191178283--191178458 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
191178273 TATTTGGGCA
191178283 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
191178329 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
191178376 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
191178422 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
191178459 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:191178438 original size:93 final size:93
Alignment explanation
Indices: 191178279--191178450 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
191178269 GGGATATTTG
* *
191178279 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
191178344 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
191178372 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
191178437 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
191178451 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:191180935 original size:19 final size:19
Alignment explanation
Indices: 191180911--191180948 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
191180901 TTCGAAACAA
191180911 GTGTAGATATAAGGGAAAC
1 GTGTAGATATAAGGGAAAC
191180930 GTGTAGATATAAGGGAAAC
1 GTGTAGATATAAGGGAAAC
191180949 ATGTGGATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.32, T:0.21
Consensus pattern (19 bp):
GTGTAGATATAAGGGAAAC
Found at i:191184780 original size:45 final size:46
Alignment explanation
Indices: 191184726--191184834 Score: 150
Period size: 47 Copynumber: 2.3 Consensus size: 46
191184716 TGCACACTTT
* *
191184726 TCACAATTGGTCATTCGGCCTTATCACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATAACACTTACACAT-TCA
*
191184772 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATA-ACACTTACACATTCA
191184819 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
191184835 ATCTTAAGCT
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 25 0.44
46 5 0.09
47 27 0.47
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATAACACTTACACATTCA
Found at i:191186504 original size:20 final size:21
Alignment explanation
Indices: 191186479--191186519 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
191186469 AGTCCTATTA
191186479 ACTAAATTC-ACATGAAATTG
1 ACTAAATTCAACATGAAATTG
191186499 ACTAAATTCAAACATGAAATT
1 ACTAAATTC-AACATGAAATT
191186520 TTCACACATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.47
22 10 0.53
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (21 bp):
ACTAAATTCAACATGAAATTG
Found at i:191188756 original size:71 final size:71
Alignment explanation
Indices: 191188672--191188835 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
191188662 CGATTTGTCT
191188672 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
191188737 CTTTCA
66 CTTTCA
191188743 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
191188808 CTTTCA
66 CTTTCA
191188814 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
191188836 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:191188873 original size:71 final size:70
Alignment explanation
Indices: 191188672--191188869 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
191188662 CGATTTGTCT
* * * *
191188672 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
191188737 CTTTCA
65 CTTTCA
* * * *
191188743 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
191188808 CTTTCA
65 CTTTCA
* *
191188814 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
191188870 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:191193041 original size:30 final size:30
Alignment explanation
Indices: 191193001--191193093 Score: 116
Period size: 31 Copynumber: 3.0 Consensus size: 30
191192991 CTTTTCATAA
191193001 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCAT-TTTCATAACACTGGGCCGAAGCCTT
**
191193032 TTCATTTTCATATTACTGGGCCGAAGCCTT
1 TTCATTTTCATAACACTGGGCCGAAGCCTT
* *
191193062 TTCAAGTTTCCT-ACTACTGGGCCGAAGCCTT
1 TTC-ATTTTCATAAC-ACTGGGCCGAAGCCTT
191193093 T
1 T
191193094 ACTGTAAACG
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.48
31 28 0.52
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (30 bp):
TTCATTTTCATAACACTGGGCCGAAGCCTT
Found at i:191193083 original size:31 final size:30
Alignment explanation
Indices: 191193007--191193093 Score: 122
Period size: 30 Copynumber: 2.9 Consensus size: 30
191192997 ATAATTCATA
*
191193007 TTTCATAAC-ACTGGGCCGAAGCCTTTTCAT
1 TTTCAT-ACTACTGGGCCGAAGCCTTTTCAG
*
191193037 TTTCATATTACTGGGCCGAAGCCTTTTCAAG
1 TTTCATACTACTGGGCCGAAGCCTTTTC-AG
*
191193068 TTTCCTACTACTGGGCCGAAGCCTTT
1 TTTCATACTACTGGGCCGAAGCCTTT
191193094 ACTGTAAACG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
29 1 0.02
30 25 0.49
31 25 0.49
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (30 bp):
TTTCATACTACTGGGCCGAAGCCTTTTCAG
Found at i:191193365 original size:45 final size:47
Alignment explanation
Indices: 191193299--191193423 Score: 191
Period size: 45 Copynumber: 2.7 Consensus size: 47
191193289 CTGGAGGCCT
*
191193299 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAAAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCAAAACTGGGGCATA
* *
191193347 AGCCCTTTT-ATAA-TGGGGCATAAGCCCTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTCAAAACTGGGGCATA
*
191193392 AGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTT
191193424 TTCACTTCCT
Statistics
Matches: 72, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
45 38 0.53
46 8 0.11
47 22 0.31
48 4 0.06
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTCAAAACTGGGGCATA
Found at i:191193406 original size:24 final size:24
Alignment explanation
Indices: 191193285--191193424 Score: 182
Period size: 23 Copynumber: 6.0 Consensus size: 24
191193275 GCTTTATCAT
* *
191193285 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
191193310 ATAACTGGGGCAAAAGCCC-TTTC
1 ATAACTGGGGCATAAGCCCTTTTG
*
191193333 AAAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
191193356 ATAA-TGGGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTG
191193378 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
191193402 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
191193425 TCACTTCCTC
Statistics
Matches: 104, Mismatches: 6, Indels: 11
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.03
22 18 0.17
23 37 0.36
24 34 0.33
25 12 0.12
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:191193500 original size:20 final size:20
Alignment explanation
Indices: 191193475--191193534 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
191193465 TATGATTACC
191193475 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
191193495 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
191193515 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
191193535 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:191193505 original size:11 final size:11
Alignment explanation
Indices: 191193475--191193529 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
191193465 TATGATTACC
191193475 TCATGTGCATA
1 TCATGTGCATA
*
191193486 TCA--TACATA
1 TCATGTGCATA
191193495 TCATGTGCATA
1 TCATGTGCATA
* *
191193506 TCA--TACATT
1 TCATGTGCATA
191193515 TCATGTGCATA
1 TCATGTGCATA
191193526 TCAT
1 TCAT
191193530 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:191199632 original size:30 final size:31
Alignment explanation
Indices: 191199596--191199661 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
191199586 CCTTTTCATA
191199596 TTTCATATTTCATA-CACTGGGCCGAAGCCT
1 TTTCATATTTCATATCACTGGGCCGAAGCCT
*
191199626 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATCACTGGGCCGAAGCCT
191199657 TTTCA
1 TTTCA
191199662 ATATACTGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 14 0.41
31 20 0.59
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATCACTGGGCCGAAGCCT
Found at i:191199676 original size:23 final size:24
Alignment explanation
Indices: 191199633--191199681 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
191199623 CCTTTTCATA
191199633 TTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTACTGGGCCGAAGCCT
191199657 TTTCA-ATATACT-GGCCGAAGCCT
1 TTTCATAT-TACTGGGCCGAAGCCT
191199680 TT
1 TT
191199682 ACTGTAAACG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (24 bp):
TTTCATATTACTGGGCCGAAGCCT
Found at i:191199923 original size:24 final size:24
Alignment explanation
Indices: 191199872--191200021 Score: 216
Period size: 24 Copynumber: 6.3 Consensus size: 24
191199862 GCTTTATCAT
*
191199872 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
191199897 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
191199921 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
191199944 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
191199968 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
191199992 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
191200015 ATAACTG
1 ATAACTG
191200022 CAAGCCCTTT
Statistics
Matches: 118, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
23 30 0.25
24 76 0.64
25 12 0.10
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:191199951 original size:47 final size:47
Alignment explanation
Indices: 191199872--191200021 Score: 205
Period size: 47 Copynumber: 3.1 Consensus size: 47
191199862 GCTTTATCAT
* *
191199872 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT-A
*
191199921 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTA
* *
191199968 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
191200015 ATAACTG
1 ATAACTG
191200022 CAAGCCCTTT
Statistics
Matches: 94, Mismatches: 4, Indels: 8
0.89 0.04 0.08
Matches are distributed among these distances:
47 51 0.54
48 31 0.33
49 12 0.13
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:191199972 original size:71 final size:72
Alignment explanation
Indices: 191199871--191200021 Score: 234
Period size: 71 Copynumber: 2.1 Consensus size: 72
191199861 TGCTTTATCA
*
191199871 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
191199936 GCCCTTT
66 GCCCTTT
* * **
191199943 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
191200006 AGCCCTTT
65 AGCCCTTT
191200014 TATAACTG
1 TATAACTG
191200022 CAAGCCCTTT
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
71 60 0.82
72 13 0.18
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Done.