Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 611 of 770
Found at i:191200176 original size:25 final size:25
Alignment explanation
Indices: 191200144--191200191 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
191200134 ATACATAAAC
* * *
191200144 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
191200169 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
191200192 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:191203789 original size:40 final size:40
Alignment explanation
Indices: 191203671--191203936 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
191203661 GAGAATTGAG
*
191203671 AGTGATGTATCCGGGCTAAGTT-CGA-GAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
191203709 AGTGATGTATCCGGACTAAGTTCCG-GGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
191203748 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
191203788 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
191203828 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
*
191203868 AGTGATG--T-CGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
* * * *
191203905 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAGGAGCA
191203937 ATCGCGCTGG
Statistics
Matches: 217, Mismatches: 5, Indels: 10
0.94 0.02 0.04
Matches are distributed among these distances:
37 35 0.16
38 22 0.10
39 41 0.19
40 119 0.55
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
Found at i:191203896 original size:117 final size:117
Alignment explanation
Indices: 191203671--191203936 Score: 439
Period size: 117 Copynumber: 2.3 Consensus size: 117
191203661 GAGAATTGAG
191203671 AGTGATGTATCCGGGCTAAGTT-CGAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGG
1 AGTGATGTATCCGGGCTAAGTTCCGAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGG
*
191203735 GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCT
66 GAGCATTCGTGCTAGTGATG-ATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
191203788 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGGCTAAGTTCCGA-GAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
191203853 AGGAGCATTCGTGCTAGTGATG-T-CGGACTAAGTTCCGAAGAGCATTCGTGCT
65 -GGAGCATTCGTGCTAGTGATGATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
191203905 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTTCCG-AGAGCA
191203937 ATCGCGCTGG
Statistics
Matches: 140, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
117 76 0.54
118 5 0.04
119 38 0.27
120 21 0.15
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.27
Consensus pattern (117 bp):
AGTGATGTATCCGGGCTAAGTTCCGAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGG
GAGCATTCGTGCTAGTGATGATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:191203936 original size:77 final size:79
Alignment explanation
Indices: 191203671--191203936 Score: 416
Period size: 77 Copynumber: 3.4 Consensus size: 79
191203661 GAGAATTGAG
*
191203671 AGTGATGTATCCGGGCTAAGTT-CG-AGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG-ATCCGGACTAAGTTCCG
191203734 -GGAGCATTCGTGCT
65 AGGAGCATTCGTGCT
*
191203748 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG-ATCCGGACTAAGTTCCG
191203813 AGGAGCATTCGTGCT
65 AGGAGCATTCGTGCT
*
191203828 AGTGATGTATCCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATG-T-CGGACTAAGTTCCGA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGATCCGGACTAAGTTCCGA
*
191203891 AGAGCATTCGTGCT
66 GGAGCATTCGTGCT
* * *
191203905 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
191203937 ATCGCGCTGG
Statistics
Matches: 179, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
77 77 0.43
78 3 0.02
79 38 0.21
80 61 0.34
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.27
Consensus pattern (79 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGATCCGGACTAAGTTCCGA
GGAGCATTCGTGCT
Found at i:191204778 original size:40 final size:41
Alignment explanation
Indices: 191204681--191204778 Score: 112
Period size: 41 Copynumber: 2.4 Consensus size: 41
191204671 TCGAATGGTG
* ** * *
191204681 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAAA
1 TCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAAA
191204722 TCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TCACTATAA
1 TCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTCACTA-AA
191204763 -CCGGGCTATGTCCCGA
1 TCCGGGCTATGTCCCGA
191204779 GGACAATCGA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.37
41 28 0.57
42 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (41 bp):
TCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAAA
Found at i:191204801 original size:40 final size:40
Alignment explanation
Indices: 191204723--191204806 Score: 91
Period size: 40 Copynumber: 2.1 Consensus size: 40
191204713 GTTACTAAAT
* *
191204723 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGGCAATCGAGCGAATCACTATAA
* * *
191204763 CCGGGCT-ATGTCCCG-AGGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGG-CAATCGAGCGAATCACTATAA
191204803 CCGG
1 CCGG
191204807 TTAAATCCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
39 5 0.14
40 32 0.86
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGGCAATCGAGCGAATCACTATAA
Found at i:191207608 original size:49 final size:49
Alignment explanation
Indices: 191207551--191207781 Score: 426
Period size: 49 Copynumber: 4.7 Consensus size: 49
191207541 ATGTATGAGA
191207551 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
191207600 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
191207649 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
191207698 TGTATATGTGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
191207747 TGTATATATGTGATAAGGCCTAATGGCCGACGTGA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGA
191207782 AAGCCGAATG
Statistics
Matches: 179, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 179 1.00
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.30
Consensus pattern (49 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:191207897 original size:37 final size:36
Alignment explanation
Indices: 191207842--191207928 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
191207832 AACTTGGAAA
191207842 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
191207880 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
191207917 TATGTCCGGGTA
1 TATGTCCGGGTA
191207929 AGACTTCGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:191210632 original size:57 final size:58
Alignment explanation
Indices: 191210541--191210672 Score: 171
Period size: 57 Copynumber: 2.3 Consensus size: 58
191210531 GAAACACACT
* * * *
191210541 TCGCATACACAGTGCC-C-ACTGACTGATTTTGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACACAGTGCCTCAACTGACTGATCTGGCACACATAATGCTCGATTGAAGAAC
* * *
191210597 TCGCACACATAGTGCCTCAACT-ACTGATCTGGCACACATAATGCTCGGTTGAAGAGC
1 TCGCACACACAGTGCCTCAACTGACTGATCTGGCACACATAATGCTCGATTGAAGAAC
*
191210654 TTGCACACACAGTGCCTCA
1 TCGCACACACAGTGCCTCA
191210673 TAATTCCAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
56 14 0.22
57 48 0.74
58 3 0.05
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (58 bp):
TCGCACACACAGTGCCTCAACTGACTGATCTGGCACACATAATGCTCGATTGAAGAAC
Found at i:191210752 original size:40 final size:40
Alignment explanation
Indices: 191210680--191210914 Score: 384
Period size: 40 Copynumber: 5.9 Consensus size: 40
191210670 TCATAATTCC
* * *
191210680 AGCACGAATGC-CTTCGAGG-TTTAGCACAGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* *
191210719 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* *
191210759 AGCACGAATGCTCTTCAGGACTTTGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
191210799 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
191210839 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
191210879 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
191210915 AACTCTCAAT
Statistics
Matches: 183, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
39 13 0.07
40 170 0.93
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:191212481 original size:46 final size:46
Alignment explanation
Indices: 191212407--191212549 Score: 178
Period size: 46 Copynumber: 3.1 Consensus size: 46
191212397 ATATATATAT
* * ** *
191212407 ATATCACATCTCATACATATCTCACATTAGCCATTTGGCTTTACCAC
1 ATATC-CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCAC
* * * *
191212454 GTATCCATCTCATACACGTTTTGCATTAGCCACTCGGCTTTACCTC
1 ATATCCATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCAC
* *
191212500 ATATCCATCTCATACACATTTTGCATTAGCCATTCGGCTTCATCAC
1 ATATCCATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCAC
191212546 ATAT
1 ATAT
191212550 ATACACTTCC
Statistics
Matches: 81, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
46 77 0.95
47 4 0.05
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.35
Consensus pattern (46 bp):
ATATCCATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCAC
Found at i:191212592 original size:47 final size:47
Alignment explanation
Indices: 191212523--191212692 Score: 236
Period size: 47 Copynumber: 3.6 Consensus size: 47
191212513 ACACATTTTG
* * * * *
191212523 CATTAGCCATTCGG-CTTCATCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTT-ATCACACATATGCA-TGTTCACATTCATCA
** *
191212570 CATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
191212617 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
191212664 CATTGGCCATTCGGCCTTATCACACATAT
1 CATTGGCCATTCGGCCTTATCACACATAT
191212693 TCGGCCTTAT
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.01
47 108 0.96
48 3 0.03
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:191212687 original size:22 final size:22
Alignment explanation
Indices: 191212613--191212687 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
191212603 GTTCACATTC
191212613 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
191212635 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
191212659 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
191212682 ATCACA
1 ATCACA
191212688 CATATTCGGC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:191212696 original size:19 final size:19
Alignment explanation
Indices: 191212672--191212711 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
191212662 CACATTGGCC
191212672 ATTCGGCCTTATCACACAT
1 ATTCGGCCTTATCACACAT
191212691 ATTCGGCCTTATCACACAT
1 ATTCGGCCTTATCACACAT
191212710 AT
1 AT
191212712 GCATGTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (19 bp):
ATTCGGCCTTATCACACAT
Found at i:191212702 original size:66 final size:66
Alignment explanation
Indices: 191212625--191212824 Score: 364
Period size: 66 Copynumber: 3.0 Consensus size: 66
191212615 CACATTGGCC
191212625 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
191212690 T
66 T
**
191212691 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCAACCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
191212756 T
66 T
* *
191212757 ATCCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
191212822 T
66 T
191212823 AT
1 AT
191212825 GCATGCTCAC
Statistics
Matches: 128, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 128 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (66 bp):
ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
T
Found at i:191212808 original size:113 final size:117
Alignment explanation
Indices: 191212563--191212846 Score: 324
Period size: 113 Copynumber: 2.5 Consensus size: 117
191212553 CACTTCCACG
**
191212563 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
** * * * *
191212628 CGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCC
66 CAACCTTATCACACATATGCACGTGCACATTCATCACATTGGCCATTCGACA
* *
191212680 TT-ATCACA----CATATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCAT
1 TTCATCACATTGGC-CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCAT
*
191212740 TCAACCTTATCACACATAT-C-CG-GC-CTTATCA-CACATAT-G-CATGTTC-ACA
65 TCAACCTTATCACACATATGCACGTGCACAT-TCATCACAT-TGGCCA--TTCGACA
*
191212789 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT
191212847 AAAATCCTAA
Statistics
Matches: 143, Mismatches: 14, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
108 2 0.01
109 11 0.08
110 14 0.10
111 1 0.01
112 2 0.01
113 104 0.73
114 1 0.01
116 6 0.04
117 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (117 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
CAACCTTATCACACATATGCACGTGCACATTCATCACATTGGCCATTCGACA
Found at i:191222218 original size:79 final size:82
Alignment explanation
Indices: 191222078--191222262 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
191222068 TCGAATGATG
* * *
191222078 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
191222142 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
191222158 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
191222220 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
191222238 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
191222263 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:191222270 original size:40 final size:40
Alignment explanation
Indices: 191222079--191222270 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
191222069 CGAATGATGT
* * * * *
191222079 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
191222119 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
191222159 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
191222198 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
191222238 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
191222271 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:191222293 original size:79 final size:79
Alignment explanation
Indices: 191222078--191222295 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
191222068 TCGAATGATG
* * * * ** *
191222078 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
191222141 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
191222158 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
191222223 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
191222238 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
191222296 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:191223239 original size:15 final size:15
Alignment explanation
Indices: 191223219--191223247 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
191223209 AAATTCATTG
191223219 TAAATTAACCAGAAA
1 TAAATTAACCAGAAA
191223234 TAAATTAACCAGAA
1 TAAATTAACCAGAA
191223248 CGACATCAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (15 bp):
TAAATTAACCAGAAA
Found at i:191230216 original size:79 final size:82
Alignment explanation
Indices: 191230076--191230260 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
191230066 TCGAATGATG
* * *
191230076 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
191230140 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
191230156 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
191230218 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
191230236 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
191230261 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:191230268 original size:40 final size:40
Alignment explanation
Indices: 191230077--191230268 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
191230067 CGAATGATGT
* * * * *
191230077 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
191230117 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
191230157 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
191230196 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
191230236 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
191230269 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:191230291 original size:79 final size:79
Alignment explanation
Indices: 191230076--191230293 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
191230066 TCGAATGATG
* * * * ** *
191230076 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
191230139 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
191230156 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
191230221 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
191230236 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
191230294 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:191232236 original size:40 final size:40
Alignment explanation
Indices: 191232181--191232350 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
191232171 AACATTGGAA
191232181 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
191232221 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
191232261 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
191232300 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
191232341 CTATATCCGG
1 ATATATCCGG
191232351 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:191242237 original size:40 final size:40
Alignment explanation
Indices: 191242182--191242391 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
191242172 AACATTGGAA
191242182 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
191242222 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
191242262 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
191242302 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
191242341 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
191242382 CTATATCCGG
1 ATATATCCGG
191242392 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:191249825 original size:78 final size:80
Alignment explanation
Indices: 191249712--191249892 Score: 237
Period size: 78 Copynumber: 2.3 Consensus size: 80
191249702 TACTCGTTCA
* *
191249712 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
191249775 ATTTAGTAAC-TCGCAC
65 ATAT-GTAACTTAGCAC
**
191249791 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
191249854 TATGTCACTTAGCAC
66 TATGTAACTTAGCAC
*
191249869 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
191249893 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
77 7 0.08
78 59 0.66
79 24 0.27
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATGTAACTTAGCAC
Found at i:191249834 original size:39 final size:40
Alignment explanation
Indices: 191249710--191249892 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
191249700 GCTACTCGTT
* *
191249710 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
191249750 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
191249790 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
191249828 CAAATGCCTTC-GGATCTTAGTCCGG-A-TATGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATTA-GTAAC-TCGCA
191249868 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
191249893 CATCATTCGA
Statistics
Matches: 127, Mismatches: 8, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
38 28 0.22
39 41 0.32
40 56 0.44
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:191253923 original size:40 final size:40
Alignment explanation
Indices: 191253506--191253935 Score: 637
Period size: 40 Copynumber: 10.8 Consensus size: 40
191253496 AGCATGATTC
* * * * * *
191253506 CTCTTTGGGACCTAGCCTGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * *
191253546 CTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
191253586 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
191253626 CTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* **
191253666 CTCTTCGGGACTTAGTCTAGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
191253706 CTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
191253746 CTCTTCGGGACTTAGCCCGAATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
191253786 CTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
191253826 CTCTTCGGGACTTAGCCCAGG-TACGTCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCC-GGATACATCACTAGCACGAATG
*
191253866 CTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
191253906 CTTTTCGGGACTTAGCCCGGGTATATCACT
1 CTCTTCGGGACTTAGCCCGGATACATCACT
191253936 CTCAATGAAC
Statistics
Matches: 360, Mismatches: 28, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 356 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:191256733 original size:40 final size:40
Alignment explanation
Indices: 191256678--191256885 Score: 292
Period size: 40 Copynumber: 5.2 Consensus size: 40
191256668 TGAATGATAC
* * * *
191256678 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
191256718 CCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
191256758 CCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
191256798 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
191256838 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
191256878 CC-GGCTAA
1 CCGGGCTAA
191256886 ATTCCGAAGA
Statistics
Matches: 150, Mismatches: 18, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 5 0.03
40 145 0.97
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:191258021 original size:37 final size:38
Alignment explanation
Indices: 191257961--191258036 Score: 118
Period size: 37 Copynumber: 2.0 Consensus size: 38
191257951 GCTCAGACGA
* *
191257961 AATCTCCACATGAAGTTATCGGGTCTTACCCGG-ATAT
1 AATCTCCACATGAAGTCAGCGGGTCTTACCCGGAATAT
*
191257998 AATCTCCACATGTAGTCAGCGGGTCTTACCCGGAATAT
1 AATCTCCACATGAAGTCAGCGGGTCTTACCCGGAATAT
191258036 A
1 A
191258037 TTTCCAAGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
37 30 0.86
38 5 0.14
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (38 bp):
AATCTCCACATGAAGTCAGCGGGTCTTACCCGGAATAT
Found at i:191258253 original size:46 final size:46
Alignment explanation
Indices: 191258183--191258319 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
191258173 TATATATACA
* * * *
191258183 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
191258229 CATCTCATACACGTTTCGCGTTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
191258275 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
191258320 ATACATGTTC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:191258354 original size:47 final size:47
Alignment explanation
Indices: 191258293--191258484 Score: 303
Period size: 47 Copynumber: 4.1 Consensus size: 47
191258283 ACACATTTCG
* * * *
191258293 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
* * **
191258340 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
191258387 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
191258434 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
191258481 CATT
1 CATT
191258485 TAATCCTAAA
Statistics
Matches: 136, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 136 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:191265416 original size:41 final size:41
Alignment explanation
Indices: 191265371--191265488 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
191265361 TGAAAGATAA
191265371 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
191265412 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
191265442 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
191265483 ATGTAG
1 ATGTAG
191265489 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:191265427 original size:71 final size:71
Alignment explanation
Indices: 191265339--191265502 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
191265329 GAGATGTATC
191265339 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
191265404 AGGACA
66 AGGACA
191265410 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
191265475 AGGACA
66 AGGACA
191265481 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
191265503 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:191272915 original size:67 final size:68
Alignment explanation
Indices: 191272844--191273040 Score: 245
Period size: 71 Copynumber: 2.8 Consensus size: 68
191272834 ACACCCTGTA
* * * *
191272844 GTAGCTAGGTCACATGTG-TACGAGAGATGTATC-CCATGTAGACAAGAGAGCTACGTGAAAGAT
1 GTAGCTAGGTCGCATGTGATACAAGAGAAGGA-CACCATGTAGACAAGAGAGCTACGTGAAAGAT
191272907 AAAT
65 AAAT
* *
191272911 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCAT--GTGA-TACAAGAGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
191272976 ATAAAT
63 ATAAAT
* *
191272982 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCAT--GTGA-TACAAGAGAAGGACACCATGTAGACAAGAGAGCTACG
191273041 AGACAAATCG
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
67 14 0.12
69 3 0.03
70 1 0.01
71 101 0.85
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.20
Consensus pattern (68 bp):
GTAGCTAGGTCGCATGTGATACAAGAGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAGATA
AAT
Found at i:191272954 original size:41 final size:41
Alignment explanation
Indices: 191272909--191273026 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
191272899 TGAAAGATAA
191272909 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
191272950 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
191272980 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
191273021 ATGTAG
1 ATGTAG
191273027 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:191272965 original size:71 final size:71
Alignment explanation
Indices: 191272877--191273040 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
191272867 GAGATGTATC
191272877 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
191272942 AGGACA
66 AGGACA
191272948 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
191273013 AGGACA
66 AGGACA
191273019 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
191273041 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:191276297 original size:29 final size:29
Alignment explanation
Indices: 191276195--191276296 Score: 125
Period size: 29 Copynumber: 3.5 Consensus size: 29
191276185 GTGACGAGAT
191276195 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
191276224 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
191276253 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
191276282 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
191276297 GGGTTTAAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 61 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:191276353 original size:28 final size:28
Alignment explanation
Indices: 191276284--191276384 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
191276274 GAAGGGTATG
* * * *
191276284 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
191276314 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
191276342 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
191276371 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
191276385 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:191284153 original size:58 final size:58
Alignment explanation
Indices: 191284079--191284246 Score: 178
Period size: 58 Copynumber: 2.9 Consensus size: 58
191284069 TACGGTGACG
* *
191284079 AGAT-TGGCACTAAGTGTGCATGCTGAAAATATATGGCACTAAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGA-GCTCGAA
* * **
191284136 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGAGCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
* * ** * * * *
191284194 GGGTATGGCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAG
1 AGATATGGCACTAAGTGTGCATGCTGAAAA-TATACGGCACTAAGTGTGCGAG
191284247 TTTGATTATA
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
57 3 0.03
58 68 0.76
59 19 0.21
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGAAAATATACGGCACTAAGTGTGCGAGCTCGAA
Found at i:191284214 original size:29 final size:29
Alignment explanation
Indices: 191284083--191284213 Score: 174
Period size: 29 Copynumber: 4.5 Consensus size: 29
191284073 GTGACGAGAT
*
191284083 TGGCACTAAGTGTGCATGCTGAAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
191284112 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
191284141 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
191284170 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
191284199 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
191284214 GGGTTTAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 89 0.99
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:191284270 original size:28 final size:28
Alignment explanation
Indices: 191284201--191284299 Score: 110
Period size: 28 Copynumber: 3.4 Consensus size: 28
191284191 GAAGGGTATG
* * * *
191284201 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
191284231 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
191284259 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
191284288 GCACTAAGTGTG
1 GCACTAAGTGTG
191284300 TGGATTCACT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.39
29 17 0.27
30 18 0.29
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:191288507 original size:48 final size:47
Alignment explanation
Indices: 191288424--191288649 Score: 171
Period size: 48 Copynumber: 4.9 Consensus size: 47
191288414 ACCATGGTTA
* * * * *
191288424 ATGAGATCCCGTGTAAGACCATGTCTGGGACATGGCATCAGCAACAAT
1 ATGAGATCCTGTATAAGACCATATCTGGGATATGGCATCGGC-ACAAT
* * * *
191288472 ATGTGATCCTGTATAAGACCATATCAGGGATATGGCTTCGGCATCATT
1 ATGAGATCCTGTATAAGACCATATCTGGGATATGGCATCGGCA-CAAT
* * * * *
191288520 AAGTGAT-TTCGTATAAGACCAT-TTTCGGGACATGGCATC-G----AT
1 ATGAGATCCT-GTATAAGACCATATCT-GGGATATGGCATCGGCACAAT
* * *
191288562 ATGAGGTCCCGTATAAGACCATGTCTGGGATATGGCATCGGCACCAAT
1 ATGAGATCCTGTATAAGACCATATCTGGGATATGGCATCGGCA-CAAT
* *
191288610 ATGAGA-CTTCGTATAAAACCATATCTGGGATATGGCATCG
1 ATGAGATCCT-GTATAAGACCATATCTGGGATATGGCATCG
191288650 ATATGCGGAC
Statistics
Matches: 138, Mismatches: 28, Indels: 24
0.73 0.15 0.13
Matches are distributed among these distances:
42 29 0.21
43 3 0.02
47 5 0.04
48 101 0.73
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (47 bp):
ATGAGATCCTGTATAAGACCATATCTGGGATATGGCATCGGCACAAT
Found at i:191288596 original size:90 final size:90
Alignment explanation
Indices: 191288482--191288695 Score: 259
Period size: 90 Copynumber: 2.4 Consensus size: 90
191288472 ATGTGATCCT
* * * * * * * *
191288482 GTATAAGACCATATCAGGGATATGGCTTCGGCATCATTAAGTGATTTCGTATAAGACCAT-TTTC
1 GTATAAGACCATGTCTGGGATATGGCTTCGGCACCAATAAGAGACTTCGTATAAAACCATATCT-
*
191288546 GGGACATGGCATCGATATGAGGTCCC
65 GGGACATGGCATCGATATGAGGACCC
* *
191288572 GTATAAGACCATGTCTGGGATATGGCATCGGCACCAATATGAGACTTCGTATAAAACCATATCTG
1 GTATAAGACCATGTCTGGGATATGGCTTCGGCACCAATAAGAGACTTCGTATAAAACCATATCTG
* *
191288637 GGATATGGCATCGATATGCGGACCC
66 GGACATGGCATCGATATGAGGACCC
* * * *
191288662 ATGTAAGACCATGTCTGGGACATGGCTTTGGCAC
1 GTATAAGACCATGTCTGGGATATGGCTTCGGCAC
191288696 TCTATTTGGT
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
90 103 0.98
91 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (90 bp):
GTATAAGACCATGTCTGGGATATGGCTTCGGCACCAATAAGAGACTTCGTATAAAACCATATCTG
GGACATGGCATCGATATGAGGACCC
Found at i:191288679 original size:42 final size:41
Alignment explanation
Indices: 191288529--191288687 Score: 131
Period size: 42 Copynumber: 3.7 Consensus size: 41
191288519 TAAGTGATTT
* *
191288529 CGTATAAGACCAT-TTTCGGGACATGGCATCGATATGAGGTCC
1 CGTATAAGACCATGTCT-GGGACATGGCATCGATATG-GGACC
* * *
191288571 CGTATAAGACCATGTCTGGGATATGGCATCGGCACCAATATGAGACTT
1 CGTATAAGACCATGTCTGGGACATGGCATC-G-----ATATGGGAC-C
* * *
191288619 CGTATAAAACCATATCTGGGATATGGCATCGATATGCGGACC
1 CGTATAAGACCATGTCTGGGACATGGCATCGATATG-GGACC
* *
191288661 CATGTAAGACCATGTCTGGGACATGGC
1 CGTATAAGACCATGTCTGGGACATGGC
191288688 TTTGGCACTC
Statistics
Matches: 94, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 52 0.55
43 6 0.06
47 3 0.03
48 33 0.35
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (41 bp):
CGTATAAGACCATGTCTGGGACATGGCATCGATATGGGACC
Found at i:191291106 original size:64 final size:64
Alignment explanation
Indices: 191291012--191291155 Score: 245
Period size: 64 Copynumber: 2.2 Consensus size: 64
191291002 TGGAACCATA
*
191291012 CATGCAACCTAGCTACATTTATCCCATAGCTCTCTTGTCTG-CATGGTGTACACATAGTATCACC
1 CATGCAACCTAGCTACATATATCCCATAGCTCTCTTGTC-GACATGGTGTACACATAGTATCACC
* *
191291076 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCGACATGGTGTACACATAGTATCACC
1 CATGCAACCTAGCTACATATATCCCATAGCTCTCTTGTCGACATGGTGTACACATAGTATCACC
191291140 CATGCAACCTAGCTAC
1 CATGCAACCTAGCTAC
191291156 CTCATAATGT
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
63 1 0.01
64 74 0.99
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (64 bp):
CATGCAACCTAGCTACATATATCCCATAGCTCTCTTGTCGACATGGTGTACACATAGTATCACC
Found at i:191291463 original size:38 final size:38
Alignment explanation
Indices: 191291420--191291496 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
191291410 TTCCATGTCG
*
191291420 AATTAATATTGAGCATTTAAATCATCATAATTATACTT
1 AATTAATATTGAACATTTAAATCATCATAATTATACTT
191291458 AATTAATATTGAACATTTAAATCATCATAATTATACTT
1 AATTAATATTGAACATTTAAATCATCATAATTATACTT
191291496 A
1 A
191291497 CTTTCAACAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.42
Consensus pattern (38 bp):
AATTAATATTGAACATTTAAATCATCATAATTATACTT
Found at i:191298074 original size:43 final size:42
Alignment explanation
Indices: 191297943--191298085 Score: 144
Period size: 43 Copynumber: 3.3 Consensus size: 42
191297933 ATACCACGTT
* * * * * *
191297943 TGGGACGTTGGCATCGATTTAAGATTTACGTGTAAGAACATGTC
1 TGGGACATTGGCATC-ATATATGA-TTACATGTAAGACCCTGTC
* * *
191297987 TGGGACATTGGCATCATATATGATTTCGTGTAAGACCCTTTC
1 TGGGACATTGGCATCATATATGATTACATGTAAGACCCTGTC
* *
191298029 TGGGACAGTGGCATCGATATTTGATTACATGTAAGA-CCTCGTC
1 TGGGACATTGGCATC-ATATATGATTACATGTAAGACCCT-GTC
191298072 TGGGACATTGGCAT
1 TGGGACATTGGCAT
191298086 TGTACGAGCT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
42 32 0.38
43 38 0.45
44 14 0.17
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
TGGGACATTGGCATCATATATGATTACATGTAAGACCCTGTC
Found at i:191300664 original size:40 final size:40
Alignment explanation
Indices: 191300556--191300765 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
191300546 CGGGATTTAA
* * * * *
191300556 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
191300596 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
191300636 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
191300676 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
191300716 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
191300756 CCGGATATAT
1 CCGGATATAT
191300766 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:191308807 original size:40 final size:40
Alignment explanation
Indices: 191308684--191308890 Score: 278
Period size: 40 Copynumber: 5.2 Consensus size: 40
191308674 CGGGATTTAA
* * * * *
191308684 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
191308724 CCGGATTTGGT-GACTTGCACAAAGGCCTTC-GGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
191308763 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
191308803 CCGGATATATC-A-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
191308841 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
191308881 CCGGATATAT
1 CCGGATATAT
191308891 TTCCAATGTT
Statistics
Matches: 147, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
38 38 0.26
39 31 0.21
40 78 0.53
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:191308860 original size:78 final size:78
Alignment explanation
Indices: 191308684--191308890 Score: 290
Period size: 78 Copynumber: 2.6 Consensus size: 78
191308674 CGGGATTTAA
* * * * * * * * *
191308684 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGTGACTTGCACAAAGG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT-ATCACTCGCACAAAGG
191308749 CCTTCGGTCTTAGC
65 CCTTCGGTCTTAGC
* *
191308763 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCA-TCGCACGAATGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCACTCGCACAAAGGC
191308827 CTTCGGGTCTTAGC
66 CTTC-GGTCTTAGC
191308841 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
191308891 TTCCAATGTT
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
77 13 0.11
78 61 0.53
79 42 0.36
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.26
Consensus pattern (78 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCACTCGCACAAAGGC
CTTCGGTCTTAGC
Found at i:191316745 original size:29 final size:30
Alignment explanation
Indices: 191316637--191316749 Score: 112
Period size: 28 Copynumber: 4.0 Consensus size: 30
191316627 ACCTATATAT
*
191316637 ATATGGCCTACTAGGCCC-AATCTC-TTTC
1 ATATGGCCTACTAGGCCCAAATCACATTTC
* *
191316665 ATATGGCCTATTAGG-CCAATTCACATTT-
1 ATATGGCCTACTAGGCCCAAATCACATTTC
* * * *
191316693 ATGT-GCCCATTAGGCCCAAGTCACATTTC
1 ATATGGCCTACTAGGCCCAAATCACATTTC
*
191316722 ATATGGCC-ACTAGACCCAAATCACATTT
1 ATATGGCCTACTAGGCCCAAATCACATTT
191316750 ACAGTCATGC
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
27 11 0.16
28 33 0.47
29 23 0.33
30 3 0.04
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.30
Consensus pattern (30 bp):
ATATGGCCTACTAGGCCCAAATCACATTTC
Found at i:191319612 original size:68 final size:67
Alignment explanation
Indices: 191319540--191319689 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
191319530 CATCATGTGT
* * * *
191319540 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
191319602 ATGTAG
62 ATGTAG
** * *
191319608 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
191319673 AG
66 AG
191319675 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
191319690 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:191319645 original size:64 final size:64
Alignment explanation
Indices: 191319564--191319747 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
191319554 AGACATTATG
* *
191319564 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
191319628 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
191319693 AA
63 AA
* * * *
191319695 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
191319748 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:191320835 original size:2 final size:2
Alignment explanation
Indices: 191320828--191320857 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
191320818 TCATGACATG
191320828 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
191320858 GTCTCAATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:191324055 original size:68 final size:67
Alignment explanation
Indices: 191323983--191324132 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
191323973 CATCATGTGT
* * * *
191323983 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
191324045 ATGTAG
62 ATGTAG
** * *
191324051 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
191324116 AG
66 AG
191324118 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
191324133 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:191324088 original size:64 final size:64
Alignment explanation
Indices: 191324007--191324190 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
191323997 AGACATTATG
* *
191324007 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
191324071 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
191324136 AA
63 AA
* * * *
191324138 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
191324191 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:191328815 original size:43 final size:43
Alignment explanation
Indices: 191328754--191328922 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 43
191328744 TAGGATTTCT
* * *
191328754 GATATGTGATTACATGTAAGACCACGTCTAGGATGTTGGCATC
1 GATATGTGATTACATGTAAGACCACATCTGGGACGTTGGCATC
* ** * * * *
191328797 GATATGTGATTACGTGTAAGACCATGTCTGAGACATCGACATC
1 GATATGTGATTACATGTAAGACCACATCTGGGACGTTGGCATC
* * *
191328840 G-TATTTGATT-CGTGTAAGACC-CTATCTGGGAAAG-TGGCATC
1 GATATGTGATTACATGTAAGACCAC-ATCTGGG-ACGTTGGCATC
191328881 GATATGTGATTACATGTAAGACCACATCTGGGACGTTGGCAT
1 GATATGTGATTACATGTAAGACCACATCTGGGACGTTGGCAT
191328923 TGTACGATAT
Statistics
Matches: 101, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
41 22 0.22
42 19 0.19
43 59 0.58
44 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
GATATGTGATTACATGTAAGACCACATCTGGGACGTTGGCATC
Found at i:191333548 original size:55 final size:53
Alignment explanation
Indices: 191333435--191333828 Score: 376
Period size: 55 Copynumber: 7.4 Consensus size: 53
191333425 AACATACCAT
* * * *
191333435 TGCCATGTCTTGACGTGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
191333488 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTAATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * *
191333543 TGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
* * ***
191333597 TGCCATGCCTTGGCATGGTCTTACATGATA---T-CCTTATCTTAC-CA--AA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
** * *
191333643 TGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTGTCTTATA-AACTCACCAA
1 TGCCATG--CCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
191333697 TGCCATGCCTTGGCATAGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * *
191333752 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
* *
191333806 TGTCATGCCTTGGCATGGTCTTA
1 TGCCATGCCTTGACATGGTCTTA
191333829 AATGATATCC
Statistics
Matches: 278, Mismatches: 44, Indels: 37
0.77 0.12 0.10
Matches are distributed among these distances:
46 9 0.03
47 16 0.06
48 3 0.01
49 8 0.03
50 1 0.00
51 3 0.01
52 13 0.05
53 58 0.21
54 74 0.27
55 89 0.32
56 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:191333614 original size:54 final size:54
Alignment explanation
Indices: 191333435--191333840 Score: 406
Period size: 54 Copynumber: 7.6 Consensus size: 54
191333425 AACATACCAT
* * * * *
191333435 TGCCATGTCTTGACGTGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* ** *
191333488 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTAATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* *
191333543 TGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* **
191333597 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
** * * *
191333643 TGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTGTCTTATA-AACTCACCAA
1 TGCCATG--CCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * **
191333697 TGCCATGCCTTGGCATAGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * *
191333752 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * *
191333806 TGTCATGCCTTGGCATGGTCTTAAATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
191333841 ATCTTACCAA
Statistics
Matches: 293, Mismatches: 42, Indels: 35
0.79 0.11 0.09
Matches are distributed among these distances:
46 9 0.03
47 23 0.08
48 4 0.01
49 3 0.01
51 2 0.01
52 9 0.03
53 58 0.20
54 92 0.31
55 89 0.30
56 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:191333815 original size:209 final size:209
Alignment explanation
Indices: 191333450--191333893 Score: 807
Period size: 209 Copynumber: 2.1 Consensus size: 209
191333440 TGTCTTGACG
* * * *
191333450 TGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATG
1 TGGTCTTACATGGTATCCTTGTCTTATAAACTCACCAATGCCATGCCTTGGCATAGTCTTACATG
191333515 GGACCTTTGCCTAATAGTAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGC
66 GGACCTTTGCCTAATAGTAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGC
*
191333580 CTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAAATG
131 CTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTAAATGATATCCTTATCTTACCAAATG
191333645 CCATGTTCCAAACA
196 CCATGTTCCAAACA
191333659 TGGTCTTACATGGTATCCTTGTCTTATAAACTCACCAATGCCATGCCTTGGCATAGTCTTACATG
1 TGGTCTTACATGGTATCCTTGTCTTATAAACTCACCAATGCCATGCCTTGGCATAGTCTTACATG
* *
191333724 GGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGC
66 GGACCTTTGCCTAATAGTAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGC
*
191333789 CTTATAGAACTTATCAATGTCATGCCTTGGCATGGTCTTAAATGATATCCTTATCTTACCAAATG
131 CTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTAAATGATATCCTTATCTTACCAAATG
191333854 CCATGTTCCAAACA
196 CCATGTTCCAAACA
*
191333868 TGGTCTTACATGGTATCATTGTCTTA
1 TGGTCTTACATGGTATCCTTGTCTTA
191333894 CCAAATGCCA
Statistics
Matches: 226, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
209 226 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.35
Consensus pattern (209 bp):
TGGTCTTACATGGTATCCTTGTCTTATAAACTCACCAATGCCATGCCTTGGCATAGTCTTACATG
GGACCTTTGCCTAATAGTAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGC
CTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTAAATGATATCCTTATCTTACCAAATG
CCATGTTCCAAACA
Found at i:191333872 original size:47 final size:47
Alignment explanation
Indices: 191333819--191333940 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
191333809 CATGCCTTGG
* * * *
191333819 CATGGTCTTAAATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATATTCCAAA
*
191333866 CATGGTCTTACATGGTATCATTGTCTTACCAAATGCCATATTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATATTCCAAA
191333913 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
191333941 GTGCCAATGC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATATTCCAAA
Found at i:191336274 original size:80 final size:80
Alignment explanation
Indices: 191336190--191336338 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
191336180 TATGGTAACC
* * * *
191336190 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
191336254 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
191336270 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
191336335 CCGG
66 CCGG
191336339 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:191336280 original size:40 final size:38
Alignment explanation
Indices: 191336231--191336338 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
191336221 ATCACGATTT
*
191336231 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
191336271 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
191336311 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
191336339 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:191343046 original size:80 final size:80
Alignment explanation
Indices: 191342962--191343110 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
191342952 TATGGTAACC
* * * *
191342962 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
191343026 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
191343042 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
191343107 CCGG
66 CCGG
191343111 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:191343052 original size:40 final size:38
Alignment explanation
Indices: 191343003--191343110 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
191342993 ATCACGATTT
*
191343003 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
191343043 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
191343083 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
191343111 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:191351484 original size:74 final size:72
Alignment explanation
Indices: 191351402--191351726 Score: 292
Period size: 72 Copynumber: 4.6 Consensus size: 72
191351392 CTTTACATGT
* * ** *
191351402 TTTCAAAAATCAATTCATATTACGAGAAATGAGTTGAGTCTCAGGTCACACGCTGAGGTATTTTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-ACACGCTGAGGTATTTTT
*
191351467 AGTTTATG
65 AATTTATG
** **
191351475 TTTCAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGT-CACGCTGAGG--TTTTT
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTT
*
191351537 AATTCCTGTTG
65 AATT--T-ATG
* * * * * *
191351548 TTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA---AGACGTTGAGGTAATTTCA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTTA
191351610 ATTTATG
66 ATTTATG
* * *
191351617 -TTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GCACACTGAGGTATTTTTA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTTA
*
191351679 GTTTATG
66 ATTTATG
** * * *
191351686 TTT-AGAAAATTGACTCATCTTGCGAAAGGTGAGTTAAGCCT
1 TTTCA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
191351727 TTTAATTTTT
Statistics
Matches: 203, Mismatches: 38, Indels: 25
0.76 0.14 0.09
Matches are distributed among these distances:
68 38 0.19
69 21 0.10
70 50 0.25
72 51 0.25
73 10 0.05
74 33 0.16
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (72 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTTA
ATTTATG
Found at i:191351718 original size:70 final size:71
Alignment explanation
Indices: 191351402--191351726 Score: 270
Period size: 70 Copynumber: 4.6 Consensus size: 71
191351392 CTTTACATGT
** * * ** * *
191351402 TTTCAAAAATCAATTCATATTACGAGAAATGAGTTGAGTCTCAGGTCACACGCTGAGGTATTTTT
1 TTTCAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACA--CTGAGGTATTTTT
*
191351467 AGTTTATG
64 AATTTATG
** * *
191351475 TTTCAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGG--TTTTTA
1 TTTC-AAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTTA
*
191351538 ATTCCTGTTG
65 ATT--T-ATG
* * * ** * *
191351548 TTTCAAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA-AG-ACGTTGAGGTAATTTCA
1 TTTCAAAAATTGA-CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTTA
191351610 ATTTATG
65 ATTTATG
* ** *
191351617 -TTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACACTGAGGTATTTTTAG
1 TTTCAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTTAA
191351680 TTTATG
66 TTTATG
* * *
191351686 TTT-AGAAAATTGACTCATCTTGCGAAAGGTGAGTTAAGCCT
1 TTTCA-AAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCT
191351727 TTTAATTTTT
Statistics
Matches: 202, Mismatches: 38, Indels: 27
0.76 0.14 0.10
Matches are distributed among these distances:
68 36 0.18
69 22 0.11
70 50 0.25
71 2 0.01
72 46 0.23
73 10 0.05
74 36 0.18
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (71 bp):
TTTCAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACACTGAGGTATTTTTAA
TTTATG
Found at i:191351819 original size:14 final size:14
Alignment explanation
Indices: 191351800--191351834 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
191351790 TGCTGAGCTA
* *
191351800 TTTTCAATTTCTGC
1 TTTTCAATTCCTAC
191351814 TTTTCAATTCCTAC
1 TTTTCAATTCCTAC
191351828 TTTTCAA
1 TTTTCAA
191351835 AAAAAATCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.03, T:0.54
Consensus pattern (14 bp):
TTTTCAATTCCTAC
Found at i:191352146 original size:74 final size:74
Alignment explanation
Indices: 191351975--191352394 Score: 429
Period size: 74 Copynumber: 5.7 Consensus size: 74
191351965 CTACTTTTTC
* * * * *
191351975 AAAATCAGCTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCA--CTGAGGTATTTTCAATTT-T
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTAT
* ***
191352037 TTTGT-TTT
66 GTTGTCAAA
** * * *
191352045 AATTTCAACTCATATGGCGAAAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTAT
191352110 GTTGTCAAA
66 GTTGTCAAA
* * * * * *
191352119 AAAAACAACTCATATTGCGAAAAGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTTAGTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTAATTTCAATTT
191352184 ATGTT-TCAAA
64 ATGTTGTCAAA
** ** * * * * **
191352194 AAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAAGTCACGCTGAGGTATTTTTAATTCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTAT
* ***
191352259 GCTGTTTCA
66 GTTGTCAAA
* * *
191352268 AAAATCAGCTCATATTGCGAGAGGTGAGTTGTGCCTCAGAACACGCTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTAT
191352333 GTTTGTC-AA
66 G-TTGTCAAA
*
191352342 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
191352395 TTGTTGATTT
Statistics
Matches: 284, Mismatches: 58, Indels: 12
0.80 0.16 0.03
Matches are distributed among these distances:
70 35 0.12
72 17 0.06
73 28 0.10
74 140 0.49
75 40 0.14
76 24 0.08
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (74 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTAT
GTTGTCAAA
Found at i:191352239 original size:149 final size:148
Alignment explanation
Indices: 191352049--191352394 Score: 426
Period size: 149 Copynumber: 2.3 Consensus size: 148
191352039 TGTTTTAATT
* * * *
191352049 TCAACTCATATGGCGAAAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTCCTGCTG
* * *
191352114 TCAAAAAAAACAACTCATATTGCGAAAAGTGAGTTGAGCCTCAGGTCACACGCTGAGGTATTTTT
66 TCAAAAAAAACAACTCATATTGCGAAAAGTGAGTTGAGCCTCA-G-AACACGCTGAGGTAATTTC
*
191352179 AGTTTATG-TT-TCAAAAAAA
129 AATTTATGTTTGTC-AAAAAA
** ** * * * *
191352198 TTGACTCATATTGCGAGAGGTGAGTCAAGCCTCAAGTCACGCTGAGGTATTTTTAATTCCTGCTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTCCTGCTG
*** * * * * *
191352263 TTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGTGCCTCAGAACACGCTGAGGTAATTTCAA
66 TCAAAAAAAACAACTCATATTGCGAAAAGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAA
191352328 TTTATGTTTGTCAAAAAA
131 TTTATGTTTGTCAAAAAA
*
191352346 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTA
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
191352395 TTGTTGATTT
Statistics
Matches: 165, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
147 23 0.14
148 52 0.32
149 90 0.55
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (148 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTCCTGCTG
TCAAAAAAAACAACTCATATTGCGAAAAGTGAGTTGAGCCTCAGAACACGCTGAGGTAATTTCAA
TTTATGTTTGTCAAAAAA
Found at i:191352532 original size:74 final size:74
Alignment explanation
Indices: 191352409--191352615 Score: 306
Period size: 74 Copynumber: 2.7 Consensus size: 74
191352399 TGATTTCTGC
* *
191352409 TTTTCAATTTCTGTTTTCAAAAATCAACTCATGTTACGAGAAGTAAGTTGAGCCTTGGCTCACGT
1 TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCACGT
191352474 GTTGAGCTA
66 GTTGAGCTA
191352483 TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCACGT
1 TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCACGT
191352548 GTTGAGCTA
66 GTTGAGCTA
* * * *
191352557 TTTTCGATTTCTGTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGCTGAGC
1 TTTTCAATTTCTG---TTTTC--AAAAA-TCAACTCATATTACGAGAAGTGAGTTGAGC
191352616 TTTTTAATTT
Statistics
Matches: 121, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
74 84 0.69
77 5 0.04
79 5 0.04
80 27 0.22
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTTGGCTCACGT
GTTGAGCTA
Found at i:191355088 original size:12 final size:12
Alignment explanation
Indices: 191355071--191355096 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
191355061 TGCGATTTTA
191355071 GTATTATTATAT
1 GTATTATTATAT
191355083 GTATTATTATAT
1 GTATTATTATAT
191355095 GT
1 GT
191355097 TATTTAGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58
Consensus pattern (12 bp):
GTATTATTATAT
Found at i:191355185 original size:15 final size:15
Alignment explanation
Indices: 191355167--191355199 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
191355157 TTCATTTTAA
191355167 ATATATTCTATA-TAC
1 ATATA-TCTATATTAC
191355182 ATATATCTATATTAC
1 ATATATCTATATTAC
191355197 ATA
1 ATA
191355200 CCCATATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATATCTATATTAC
Found at i:191361565 original size:13 final size:14
Alignment explanation
Indices: 191361534--191361564 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
191361524 TGCCGAGGTA
191361534 TTTTCAAATTATGT
1 TTTTCAAATTATGT
*
191361548 TTTTCAATTTATGT
1 TTTTCAAATTATGT
191361562 TTT
1 TTT
191361565 CCCAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (14 bp):
TTTTCAAATTATGT
Found at i:191361768 original size:161 final size:161
Alignment explanation
Indices: 191361567--191361887 Score: 520
Period size: 161 Copynumber: 2.0 Consensus size: 161
191361557 TATGTTTTCC
* *
191361567 CAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAA
1 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGCATTTTCAA
* *
191361632 TTTCTGTTTTT-TATTTTTGTT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 TTTCTGTTTTTCAATTTCTGTTCTT--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
191361695 AGACACGTTGAAGTAATTTTAATTTCTGTTCAT
129 AGACACGCTGAAGTAATTTTAATTTCTGTTCAT
191361728 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGCATTTTCAA
1 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGCATTTTCAA
*
191361793 TTTCTGTTTTTCAATTTCTGTTCGTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
66 TTTCTGTTTTTCAATTTCTGTTC-TTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
** *
191361858 GATGCGCTGAGGTAATTTTAATTTCTGTTC
130 GACACGCTGAAGTAATTTTAATTTCTGTTC
191361888 TTTAATTTAT
Statistics
Matches: 148, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
161 74 0.50
162 72 0.49
164 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.36
Consensus pattern (161 bp):
CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGCATTTTCAA
TTTCTGTTTTTCAATTTCTGTTCTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
ACACGCTGAAGTAATTTTAATTTCTGTTCAT
Found at i:191361805 original size:14 final size:14
Alignment explanation
Indices: 191361786--191361814 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
191361776 TGCTGAGGCA
191361786 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
191361800 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
191361814 T
1 T
191361815 CGTTAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:191361931 original size:90 final size:86
Alignment explanation
Indices: 191361711--191361980 Score: 305
Period size: 90 Copynumber: 3.1 Consensus size: 86
191361701 GTTGAAGTAA
* *
191361711 TTTT-AATTTCTGTTCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCA
1 TTTTCAATTTATGTTCA--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAT-A
*
191361774 CATGCTGAGG-CATTTTCAATTTCTGT
63 C--GCTGAGGTAATTTT-AATTTCTGT
* *** *
191361800 TTTTCAATTTCTGTTCGTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATGCGC
1 TTTTCAATTTATGTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGC
191361865 TGAGGTAATTTTAATTTCTGT
66 TGAGGTAATTTTAATTTCTGT
* *
191361886 TCTTT-AATTTATGTTTCAAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGGA
1 T-TTTCAATTTATG-TTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* *
191361950 CACGCTGAGGTATTTTTAATTTCTGT
61 TACGCTGAGGTAATTTTAATTTCTGT
191361976 TTTTC
1 TTTTC
191361981 GTCAAAATCA
Statistics
Matches: 157, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
86 24 0.15
87 11 0.07
88 38 0.24
89 10 0.06
90 74 0.47
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (86 bp):
TTTTCAATTTATGTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGC
TGAGGTAATTTTAATTTCTGT
Found at i:191361972 original size:252 final size:248
Alignment explanation
Indices: 191361388--191362109 Score: 805
Period size: 252 Copynumber: 2.9 Consensus size: 248
191361378 TACTCGGATG
* * *
191361388 TTTTAATTTCTGTCTTTCAAAAATCAACTCATATTGTGTA-AAGTGAGTTGAGCCTCAGGTCACA
1 TTTTAATTTATGT-TTTCAAAAATCAACTCATATTGCG-AGAGGTGAGTTGAGCCTCAGG--ACA
* * * *
191361452 CGCTGAGGTATTTTCAATTTATGTTTTTCAAAAATCAACTCATATGGCGAGAGGTGAGTTGAACC
62 CGCTGAGGTATTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
191361517 TCGG--ACATGCCGAGGTATTTTCAAATTATGTTTTTCAATTTATGTTTTCCCAAAAAATCAATT
127 TCGGTCACATGCCGAGGCATTTTCAAATTATGTTTTTCAATTTATG-TTTCCCAAAAAATCAACT
*
191361580 CATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTTTCAATTTCTGT
191 CATATTGCGAGAGGTGAGTTGAGCCTCGGATCACA-GCTGAGGTATTTTCAATTTCTGT
* * * *
191361639 TTTTTATTTTTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTT
1 TTTTAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* * **
191361704 GAAGTAATTTTAATTTCTGTTCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66 GAGGTATTTTTAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* * * * ***
191361769 GCTCACATGCTGAGGCATTTTCAATTTCTGTTTTTCAATTTCTG-TT-CGTTAAAATCAACTCAT
130 G-TCACATGCCGAGGCATTTTCAAATTATGTTTTTCAATTTATGTTTCCCAAAAAATCAACTCAT
*
191361832 ATTGCGAGAGGTGAGTTGAGCCTCAGGAT-GC-GCTGAGGTAATTTT-AATTTCTGT
194 ATTGCGAGAGGTGAGTTGAGCCTC-GGATCACAGCTGAGGT-ATTTTCAATTTCTGT
* *
191361886 TCTTTAATTTATG-TTTCAAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTAAGCCTCAGGA
1 T-TTTAATTTATGTTTTC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* *
191361950 CACGCTGAGGTATTTTTAATTTCTGTTTTTCGTCAAAATCAACTCATATTGCGAAAGGTGAGTTG
60 CACGCTGAGGTATTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTG
* ** * * * * **
191362015 AGCCTCGGGTCACATGCCCAGTTATTTTCAAATTCTGGTTTTTTTTTAATGTCTGTTTTTCAAAA
123 AGCCTC-GGTCACATGCCGAGGCATTTTCAAATTAT-G---TTTTTCAATTTATGTTTCCCAAAA
* *
191362080 AATCAACTCATATCGCAAGAGGTGAGTTGA
183 AATCAACTCATATTGCGAGAGGTGAGTTGA
191362110 ACCCAGGGTC
Statistics
Matches: 399, Mismatches: 51, Indels: 34
0.82 0.11 0.07
Matches are distributed among these distances:
247 22 0.06
248 39 0.10
249 77 0.19
250 45 0.11
251 11 0.03
252 100 0.25
253 58 0.15
254 3 0.01
257 12 0.03
258 2 0.01
259 30 0.08
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (248 bp):
TTTTAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTATTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
TCACATGCCGAGGCATTTTCAAATTATGTTTTTCAATTTATGTTTCCCAAAAAATCAACTCATAT
TGCGAGAGGTGAGTTGAGCCTCGGATCACAGCTGAGGTATTTTCAATTTCTGT
Found at i:191362247 original size:45 final size:45
Alignment explanation
Indices: 191362155--191362248 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 45
191362145 GGAGCTGATT
*
191362155 GAAGACACCAGATTTTACCTCCCTAAAGTTGCAGCGGAACTGATC
1 GAAGACACCAGATTTTACCTCCCTAAAGTTGCAGCGGAACAGATC
* * * * * * *
191362200 GAAGACACTAGATTTTGCCTCCTTGAAGTTGCAGTGGAGCAGGTC
1 GAAGACACCAGATTTTACCTCCCTAAAGTTGCAGCGGAACAGATC
191362245 GAAG
1 GAAG
191362249 TTGCAAGTCT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (45 bp):
GAAGACACCAGATTTTACCTCCCTAAAGTTGCAGCGGAACAGATC
Found at i:191363288 original size:61 final size:61
Alignment explanation
Indices: 191363147--191363288 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 61
191363137 CAAGCTCTAC
*
191363147 TGGGCCTAAGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAAT
1 TGGGCCT-AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAAT
* * *
191363208 TAGGGCCATAGCTCC--TTACAG-TATCAGAG-TATACTGGTCC-TAGCCCATATCAGTATCAAT
1 T-GGGCC-TAGC-CCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAAT
191363268 ATGGGCCGTAGCCCTATTACA
1 -TGGGCC-TAGCCCTATTACA
191363289 AGTTGAGATA
Statistics
Matches: 68, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
59 2 0.03
60 29 0.43
61 23 0.34
62 11 0.16
63 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (61 bp):
TGGGCCTAGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAAT
Found at i:191366330 original size:22 final size:21
Alignment explanation
Indices: 191366300--191366365 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 21
191366290 TACAAATTAA
191366300 ATCTCCAAG-TTTACAAGATCAT
1 ATCTCCAAGATTT-C-AGATCAT
* *
191366322 ATCTTCAAGATTTCATATCAT
1 ATCTCCAAGATTTCAGATCAT
* *
191366343 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTTCAGATCAT
191366362 ATCT
1 ATCT
191366366 AAGATTGTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
19 18 0.45
21 10 0.25
22 9 0.22
23 3 0.08
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.38
Consensus pattern (21 bp):
ATCTCCAAGATTTCAGATCAT
Found at i:191366352 original size:19 final size:19
Alignment explanation
Indices: 191366317--191366414 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
191366307 AGTTTACAAG
*
191366317 ATCATATCTTCAAGATTTCAT
1 ATCATATC-T-AAGATTGCAT
191366338 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
191366357 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
191366374 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
191366393 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
191366412 ATC
1 ATC
191366415 CTTAAAGATT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:191366381 original size:36 final size:36
Alignment explanation
Indices: 191366337--191366408 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
191366327 CAAGATTTCA
191366337 TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
191366373 TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAAGATTG
191366409 CATATCCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:191367177 original size:3 final size:3
Alignment explanation
Indices: 191367169--191367206 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
191367159 AAACATACGA
*
191367169 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
191367207 CATCCAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:191368055 original size:2 final size:2
Alignment explanation
Indices: 191368048--191368073 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
191368038 ATCCATATCC
191368048 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
191368074 TATTTAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:191369166 original size:137 final size:137
Alignment explanation
Indices: 191368920--191369203 Score: 478
Period size: 137 Copynumber: 2.1 Consensus size: 137
191368910 TATTGGGCCT
* * *
191368920 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCATTTTCAGATAACAATAAACTAGGCCTT
1 AAGCCCATTTAGGTAACAATGGCACTGGGCCAGAGCCATTTTCAGATAACAATAAACTAGGCCTT
191368985 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACACCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACACCAGTAAA
191369050 CATATGC
131 CATATGC
* * * * *
191369057 AAGCCCATTTGGGTAACAATGGCACTGGGCCAGAGCCCTTTTTAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTAGGTAACAATGGCACTGGGCCAGAGCCATTTTCAGATAACAATAAACTAGGCCTT
* *
191369122 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATTCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACACCAGTAAA
191369187 CATATGC
131 CATATGC
191369194 AAGCCCATTT
1 AAGCCCATTT
191369204 TGGGAGACTA
Statistics
Matches: 137, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
137 137 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTAGGTAACAATGGCACTGGGCCAGAGCCATTTTCAGATAACAATAAACTAGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACACCAGTAAA
CATATGC
Found at i:191369426 original size:21 final size:21
Alignment explanation
Indices: 191369402--191369441 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
191369392 CCAGTCCCAT
191369402 GCAT-CAGATAATAACAACATG
1 GCATGCAG-TAATAACAACATG
191369423 GCATGCAGTAATAACAACA
1 GCATGCAGTAATAACAACA
191369442 GTCAAACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.47, C:0.20, G:0.15, T:0.17
Consensus pattern (21 bp):
GCATGCAGTAATAACAACATG
Found at i:191369490 original size:25 final size:27
Alignment explanation
Indices: 191369453--191369505 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
191369443 TCAAACATGC
191369453 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
*
191369479 ATTTCGGT-AATTTAACTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
191369505 A
1 A
191369506 AAACTGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:191369514 original size:26 final size:25
Alignment explanation
Indices: 191369462--191369514 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
191369452 CATTTAGGTC
***
191369462 AATTTAACCCTAGGGGTATTTCGGT
1 AATTTAACCCTAGGGGTAAAACGGT
*
191369487 AATTTAACTCCTAGGGGTAAAACTGT
1 AATTTAAC-CCTAGGGGTAAAACGGT
191369513 AA
1 AA
191369515 ATTTTCCACT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (25 bp):
AATTTAACCCTAGGGGTAAAACGGT
Found at i:191371020 original size:26 final size:26
Alignment explanation
Indices: 191370982--191371091 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
191370972 CATGATATTC
191370982 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
191371008 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
191371034 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
191371060 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
191371086 TTATCA
1 TTATCA
191371092 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:191371060 original size:52 final size:52
Alignment explanation
Indices: 191370982--191371091 Score: 220
Period size: 52 Copynumber: 2.1 Consensus size: 52
191370972 CATGATATTC
191370982 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTA
191371034 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTA
191371086 TTATCA
1 TTATCA
191371092 ATTTGTATCA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 58 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTA
Found at i:191371922 original size:16 final size:17
Alignment explanation
Indices: 191371901--191371934 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
191371891 ATATTATGTA
191371901 TACTATTA-TATTTTAT
1 TACTATTATTATTTTAT
191371917 TACTATTATTATTTTAT
1 TACTATTATTATTTTAT
191371934 T
1 T
191371935 TATTATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (17 bp):
TACTATTATTATTTTAT
Found at i:191371929 original size:22 final size:19
Alignment explanation
Indices: 191371904--191371946 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 19
191371894 TTATGTATAC
191371904 TATTATATTTTATTACTATTAT
1 TATTATA-TTTATTA-T-TTAT
*
191371926 TATTTTATTTATTATTTAT
1 TATTATATTTATTATTTAT
191371945 TA
1 TA
191371947 GCATTAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 6 0.30
20 1 0.05
21 7 0.35
22 6 0.30
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (19 bp):
TATTATATTTATTATTTAT
Found at i:191372174 original size:2 final size:2
Alignment explanation
Indices: 191372150--191372192 Score: 52
Period size: 2 Copynumber: 21.5 Consensus size: 2
191372140 TATTATTAGT
* *
191372150 TA TA TA TT TT TA TA T- TA TCA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA
191372192 T
1 T
191372193 GTCTAATATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
1 1 0.03
2 34 0.92
3 2 0.05
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:191372537 original size:27 final size:25
Alignment explanation
Indices: 191372506--191372591 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 25
191372496 TTTTTAATAC
191372506 TATATTTTTAATACCATATATATTGTG
1 TATATTTTTAATA-C-TATATATTGTG
* *
191372533 TATATTCTTAATACTAAATATTGTATG
1 TATATTTTTAATACTATATATTG--TG
191372560 TAT-TTTTTAATAACTATATTATATGTG
1 TATATTTTTAAT-ACTATA-TAT-TGTG
191372587 TATAT
1 TATAT
191372592 ATTATGTACA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
25 8 0.16
26 8 0.16
27 27 0.55
28 4 0.08
29 2 0.04
ACGTcount: A:0.35, C:0.06, G:0.07, T:0.52
Consensus pattern (25 bp):
TATATTTTTAATACTATATATTGTG
Found at i:191374296 original size:7 final size:7
Alignment explanation
Indices: 191374286--191374361 Score: 56
Period size: 7 Copynumber: 11.1 Consensus size: 7
191374276 ATTTTACTTT
191374286 TATATTA
1 TATATTA
191374293 TATATTA
1 TATATTA
*
191374300 TAAATTA
1 TATATTA
*
191374307 TTTTATTA
1 -TATATTA
191374315 TAAGTATTA
1 T-A-TATTA
191374324 T-T-TT-
1 TATATTA
191374328 TA-ATTA
1 TATATTA
191374334 TATATTA
1 TATATTA
191374341 T-TATTA
1 TATATTA
191374347 CT-TATTA
1 -TATATTA
191374354 TATATTA
1 TATATTA
191374361 T
1 T
191374362 TTTTCTTAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
4 1 0.02
5 4 0.07
6 9 0.16
7 31 0.55
8 5 0.09
9 6 0.11
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:191374315 original size:15 final size:15
Alignment explanation
Indices: 191374295--191374342 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 15
191374285 TTATATTATA
191374295 TATTATAAATTATTT
1 TATTATAAATTATTT
191374310 TATTATAAGTATTATTTT
1 TATTATAA--ATTA-TTT
*
191374328 TAATTATATATTATT
1 T-ATTATAAATTATT
191374343 ATTACTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 8 0.29
16 2 0.07
17 8 0.29
18 4 0.14
19 6 0.21
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
TATTATAAATTATTT
Found at i:191374315 original size:27 final size:26
Alignment explanation
Indices: 191374285--191374404 Score: 82
Period size: 27 Copynumber: 4.5 Consensus size: 26
191374275 AATTTTACTT
191374285 TTATATTATATATTATAAATTATTTTA
1 TTATATTAT-TATTATAAATTATTTTA
* * * *
191374312 TTATAAGTATTATTTTTAATTA-TATA
1 TTAT-ATTATTATTATAAATTATTTTA
* *
191374338 TTATTATTACTTATTATATATTATTTTTC
1 TTA-TATTA-TTATTATAAATTA-TTTTA
* * * *
191374367 TTAAATTATTATTTTACATCTCTTTTA
1 TTATATTATTATTATAAAT-TATTTTA
191374394 -TATATTATTAT
1 TTATATTATTAT
191374405 ATTTTCATAT
Statistics
Matches: 71, Mismatches: 16, Indels: 13
0.71 0.16 0.13
Matches are distributed among these distances:
26 19 0.27
27 38 0.54
28 9 0.13
29 5 0.07
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (26 bp):
TTATATTATTATTATAAATTATTTTA
Found at i:191374323 original size:17 final size:16
Alignment explanation
Indices: 191374295--191374382 Score: 65
Period size: 17 Copynumber: 5.1 Consensus size: 16
191374285 TTATATTATA
191374295 TATTATAA-ATTATTT
1 TATTATAATATTATTT
191374310 TATTATAAGTATTATTTT
1 TATTATAA-TATTA-TTT
191374328 TAATTAT-ATATTATTAT
1 T-ATTATAATATTATT-T
191374345 TACTTATTATATATTATTTT
1 TA-TTA-TA-ATATTA-TTT
*
191374365 TCTTA-AATTATTATTT
1 TATTATAA-TATTATTT
191374381 TA
1 TA
191374383 CATCTCTTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 21
0.72 0.02 0.25
Matches are distributed among these distances:
15 8 0.13
16 8 0.13
17 20 0.33
18 6 0.10
19 8 0.13
20 8 0.13
21 2 0.03
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.61
Consensus pattern (16 bp):
TATTATAATATTATTT
Found at i:191374332 original size:54 final size:52
Alignment explanation
Indices: 191374231--191374381 Score: 146
Period size: 54 Copynumber: 2.8 Consensus size: 52
191374221 GTCTTATATT
* ** * *
191374231 TATTATATTATTCTATATATATT-TTTTATTATTTGT-TTATTTCTAATTTTA
1 TATTATATTATTAT-TATATATTATTTTATTATAAGTATTATTTTTAATTATA
* *
191374282 CTTTTATATTATATATTATAAATTATTTTATTATAAGTATTATTTTTAATTATA
1 -TATTATATTAT-TATTATATATTATTTTATTATAAGTATTATTTTTAATTATA
* *
191374336 TATTATTATTACTTATTATATATTATTTTTCTTA-AATTATTATTTT
1 TATTA-TATTA-TTATTATATATTA-TTTTATTATAAGTATTATTTT
191374382 ACATCTCTTT
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
52 17 0.21
53 17 0.21
54 40 0.49
55 8 0.10
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (52 bp):
TATTATATTATTATTATATATTATTTTATTATAAGTATTATTTTTAATTATA
Found at i:191374378 original size:44 final size:44
Alignment explanation
Indices: 191374309--191374451 Score: 116
Period size: 40 Copynumber: 3.5 Consensus size: 44
191374299 ATAAATTATT
*
191374309 TTATTATA-AGTATTAT-TTTTAAT-TA-TATA-TTATTATTAC
1 TTATTATATATTATTATATTTTAATATATTATATTTATTATTAC
*
191374348 TTATTATATATTATT-T-TTCTTAA-ATTATTAT-TTTA-CATCT-C
1 TTATTATATATTATTATATT-TTAATA-TATTATATTTATTAT-TAC
*
191374389 TT-TTATATATTATTATATTTTCATATATTATATTTATTAATTAC
1 TTATTATATATTATTATATTTTAATATATTATATTTATT-ATTAC
191374433 TTA-TATATA-TATATATATT
1 TTATTATATATTAT-TATATT
191374452 GTTTTATATG
Statistics
Matches: 84, Mismatches: 4, Indels: 27
0.73 0.03 0.23
Matches are distributed among these distances:
39 11 0.13
40 21 0.25
41 17 0.20
42 14 0.17
43 4 0.05
44 17 0.20
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (44 bp):
TTATTATATATTATTATATTTTAATATATTATATTTATTATTAC
Found at i:191374460 original size:44 final size:43
Alignment explanation
Indices: 191374283--191374460 Score: 146
Period size: 44 Copynumber: 4.2 Consensus size: 43
191374273 CTAATTTTAC
* *
191374283 TTTTATATTATATATTATAAATTATTTTATTATA-AGTAT-TA-T
1 TTTTATATTATATATTATTAATTA-CTTATTATATA-TATATATT
191374325 TTTTA-ATTATATATTATT-ATTACTTATTATATAT-TAT-TT
1 TTTTATATTATATATTATTAATTACTTATTATATATATATATT
*
191374364 TTCTTAAATTAT-TATT-TTACATCT-CTT-TTATATATTATTATATT
1 TT-TTATATTATATATTATTA-AT-TACTTATTATATA-TA-TATATT
*
191374408 TTCATATATTATAT-TTATTAATTACTTATATATATATATATATT
1 TT-TTATATTATATATTATTAATTACTTAT-TATATATATATATT
191374452 GTTTTATAT
1 -TTTTATAT
191374461 GTTACTTCAT
Statistics
Matches: 113, Mismatches: 5, Indels: 34
0.74 0.03 0.22
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 19 0.17
41 23 0.20
42 6 0.05
43 4 0.04
44 30 0.27
45 9 0.08
46 6 0.05
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (43 bp):
TTTTATATTATATATTATTAATTACTTATTATATATATATATT
Found at i:191379476 original size:25 final size:25
Alignment explanation
Indices: 191379442--191379546 Score: 178
Period size: 26 Copynumber: 4.2 Consensus size: 25
191379432 CATGAAATTC
191379442 TTATCATGAACATTTACCTAACCCA
1 TTATCATGAACATTTACCTAACCCA
191379467 TTATCATGAACATTTACCTAA-CCA
1 TTATCATGAACATTTACCTAACCCA
191379491 TTATCA-GAACATTTACCTAACCCA
1 TTATCATGAACATTTACCTAACCCA
*
191379515 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCCA
191379541 TTATCA
1 TTATCA
191379547 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
23 14 0.18
24 18 0.24
25 21 0.28
26 23 0.30
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCCA
Found at i:191379514 original size:48 final size:51
Alignment explanation
Indices: 191379442--191379546 Score: 189
Period size: 48 Copynumber: 2.1 Consensus size: 51
191379432 CATGAAATTC
191379442 TTATCATGAACATTTACCTAACCCATTATCAT-GAACATTTACCTAACC-A
1 TTATCATGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTA
191379491 TTATCA-GAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTA
191379541 TTATCA
1 TTATCA
191379547 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
48 25 0.46
49 22 0.41
50 7 0.13
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (51 bp):
TTATCATGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTA
Found at i:191387267 original size:28 final size:28
Alignment explanation
Indices: 191387202--191387302 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
191387192 ATAGTGAATC
*
191387202 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
191387231 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
191387259 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
191387289 CGCACACTTAGTGC
1 CGCACACTTAGTGC
191387303 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:191389274 original size:29 final size:28
Alignment explanation
Indices: 191389199--191389305 Score: 126
Period size: 28 Copynumber: 3.8 Consensus size: 28
191389189 GGGTGTTACA
* *
191389199 GGGCCAATGGGCCATATGAATGTGATTA
1 GGGCCAATGGGTCATATGAATGTGATTT
*
191389227 GGGCCAATGGGTCATATGAAAGTGATTT
1 GGGCCAATGGGTCATATGAATGTGATTT
*
191389255 GGGCCTAATGGGTCATATGAATGAGA-TT
1 GGGCC-AATGGGTCATATGAATGTGATTT
* *
191389283 GGGCCTAAAGGGTCCAAATGAAT
1 GGGCC-AATGGGT-CATATGAAT
191389306 AAGTATGGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
28 44 0.63
29 26 0.37
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (28 bp):
GGGCCAATGGGTCATATGAATGTGATTT
Found at i:191392513 original size:20 final size:20
Alignment explanation
Indices: 191392447--191392513 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
191392437 ATTCTGATAA
* *
191392447 ACATGGTATGTATGATAAGC
1 ACATGATATGTATGATATGC
*
191392467 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
191392487 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
191392507 ACATGAT
1 ACATGAT
191392514 GTACTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:191392654 original size:25 final size:24
Alignment explanation
Indices: 191392563--191392658 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
191392553 GAGGAAGTGC
191392563 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
191392587 AAAAGGGCTTATGCCCAAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
191392611 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
191392635 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
191392659 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
24 54 0.83
25 11 0.17
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:191393668 original size:40 final size:40
Alignment explanation
Indices: 191393618--191393696 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
191393608 TTAAAATACG
* *
191393618 CCTCGCTTTGAAAGAAATAAATACAAGCTGGGATTTTACA
1 CCTCACTTTGAAAGAAACAAATACAAGCTGGGATTTTACA
*
191393658 CCTCACTTTGAAAGCAACAAATACAAGCTGGGATTTTAC
1 CCTCACTTTGAAAGAAACAAATACAAGCTGGGATTTTAC
191393697 TTAAGGTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (40 bp):
CCTCACTTTGAAAGAAACAAATACAAGCTGGGATTTTACA
Found at i:191397650 original size:16 final size:16
Alignment explanation
Indices: 191397631--191397685 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
191397621 CGAAACGCCT
*
191397631 AAAAGCCGAAATGTCG
1 AAAAGCCAAAATGTCG
*
191397647 AAAAGTCAAAATG-CAG
1 AAAAGCCAAAATGTC-G
*
191397663 AAAAGCCAAAATGTCA
1 AAAAGCCAAAATGTCG
191397679 AAAAGCC
1 AAAAGCC
191397686 GAAAGTTTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 1 0.03
16 31 0.94
17 1 0.03
ACGTcount: A:0.53, C:0.18, G:0.18, T:0.11
Consensus pattern (16 bp):
AAAAGCCAAAATGTCG
Found at i:191397984 original size:28 final size:30
Alignment explanation
Indices: 191397904--191397989 Score: 133
Period size: 29 Copynumber: 3.0 Consensus size: 30
191397894 AGCATGAATA
191397904 TGAATGTGATTTGGGCCTAATGGGCCAT-C
1 TGAATGTGATTTGGGCCTAATGGGCCATAC
191397933 TGAATGTGATTTGGGCCTAATGGGCCATAC
1 TGAATGTGATTTGGGCCTAATGGGCCATAC
* *
191397963 -GAATGAGA-TTGGGCCTAGTGGGCCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
191397990 TGCATGTATG
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
28 18 0.33
29 35 0.65
30 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.28
Consensus pattern (30 bp):
TGAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:191399707 original size:16 final size:16
Alignment explanation
Indices: 191399686--191399718 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
191399676 AACAAATCCC
*
191399686 AAAATGTCGAAAAGCT
1 AAAATGCCGAAAAGCT
191399702 AAAATGCCGAAAAGCT
1 AAAATGCCGAAAAGCT
191399718 A
1 A
191399719 GAAGTTTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.15, G:0.18, T:0.15
Consensus pattern (16 bp):
AAAATGCCGAAAAGCT
Found at i:191399969 original size:28 final size:28
Alignment explanation
Indices: 191399937--191400033 Score: 122
Period size: 28 Copynumber: 3.4 Consensus size: 28
191399927 GCATACTATA
191399937 AATGTGATTGGGGCTGATGGGCCATATG
1 AATGTGATTGGGGCTGATGGGCCATATG
* *
191399965 AATGTGATTGGGGCCGATGGGTCATATG
1 AATGTGATTGGGGCTGATGGGCCATATG
* * * *
191399993 AAAGTGATTTGAGCCTAATGGGCCATATG
1 AATGTGA-TTGGGGCTGATGGGCCATATG
*
191400022 AATGAGATTGGG
1 AATGTGATTGGG
191400034 CCTATAGGGG
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 36 0.63
29 21 0.37
ACGTcount: A:0.26, C:0.10, G:0.36, T:0.28
Consensus pattern (28 bp):
AATGTGATTGGGGCTGATGGGCCATATG
Found at i:191400044 original size:29 final size:28
Alignment explanation
Indices: 191399937--191400053 Score: 105
Period size: 28 Copynumber: 4.1 Consensus size: 28
191399927 GCATACTATA
*
191399937 AATGTGATTGGGGCTGAT-GGGCCATATG
1 AATGTGATTGGGCCT-ATAGGGCCATATG
* *
191399965 AATGTGATTGGGGCCGAT-GGGTCATATG
1 AATGTGATT-GGGCCTATAGGGCCATATG
* *
191399993 AAAGTGATTTGAGCCTA-ATGGGCCATATG
1 AATGTGA-TTGGGCCTATA-GGGCCATATG
* *
191400022 AATGAGATTGGGCCTATAGGGGCCAAATG
1 AATGTGATTGGGCCTATA-GGGCCATATG
191400051 AAT
1 AAT
191400054 AAGTATGGAC
Statistics
Matches: 72, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
28 39 0.54
29 33 0.46
ACGTcount: A:0.27, C:0.12, G:0.34, T:0.26
Consensus pattern (28 bp):
AATGTGATTGGGCCTATAGGGCCATATG
Found at i:191401289 original size:40 final size:40
Alignment explanation
Indices: 191401229--191401309 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
191401219 ATTTAAAATG
191401229 CACCTCGCTTTGAAAGCAACAAATACAAGCTAGGATTTTA
1 CACCTCGCTTTGAAAGCAACAAATACAAGCTAGGATTTTA
*
191401269 CACCTCGCTTTGAAATCAACAAATACAAGCTAGGATTTTA
1 CACCTCGCTTTGAAAGCAACAAATACAAGCTAGGATTTTA
191401309 C
1 C
191401310 TCAAGGATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (40 bp):
CACCTCGCTTTGAAAGCAACAAATACAAGCTAGGATTTTA
Found at i:191401366 original size:17 final size:18
Alignment explanation
Indices: 191401333--191401366 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
191401323 TTTAAAGAAG
191401333 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
191401351 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
191401367 CTTCAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:191405056 original size:40 final size:40
Alignment explanation
Indices: 191405012--191405197 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
191405002 GCTACTCGTT
* * *
191405012 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
191405052 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
191405092 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
191405132 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
191405173 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
191405198 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:191413044 original size:40 final size:40
Alignment explanation
Indices: 191412995--191413146 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
191412985 CGGAGTTTAA
** *
191412995 CCGGATATAGCTA-CTCGTTCAAATACCTTCGGGACATAGC
1 CCGGATATAG-TAGCTCGCACAAATACCTTCGGGACATAAC
* * *
191413035 CCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAGCTCGCACAAATACCTTCGGGACATAAC
* * * * **
191413075 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAGCTCGCACAAATACCTTCGGGA-CATAAC
* * *
191413115 CCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 CCGGATATAGTAGCTCGCACAAATACCTTCGG
191413147 ATCTTAGTCC
Statistics
Matches: 98, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
39 5 0.05
40 92 0.94
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAGCTCGCACAAATACCTTCGGGACATAAC
Found at i:191413147 original size:40 final size:40
Alignment explanation
Indices: 191413014--191413199 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
191413004 GCTACTCGTT
* * *
191413014 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
191413054 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
191413094 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
191413134 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
191413175 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
191413200 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Done.