Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 615 of 770
Found at i:192529418 original size:149 final size:147
Alignment explanation
Indices: 192529141--192529432 Score: 372
Period size: 149 Copynumber: 2.0 Consensus size: 147
192529131 CATAGGGTAA
* ** * * *
192529141 GGTGTCGACGCCATGTCCTTGACATGGTCTTACACTGGCTCACACATCAAAGTCGATGCCATGTC
1 GGTGCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCACACATCAAAGCCGATACCATGTC
* * *
192529206 CTAGACATGGTCTTACACTGAATCTCAAATATCGAGGCAGATGCCATGTCCTAGACATGGTCTTA
66 CCAGACATGGTCTTACACTGAATCTCAAATATCGAGGCAGATGCCATATCCCAGACATGGTCTTA
192529271 CACT-GACTCTCATCTAC
131 CACTCG-CTCTCATCTAC
* * * * *
192529288 GGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGATACCATG
1 GGTGCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCACACA--TCAAAGCCGATACCATG
* * * *
192529353 TCCCAGACATGGTCTTACACT-AGCTCTCATATCTCGAGGCCGATGCCATATCCCAGACATGGTC
64 TCCCAGACATGGTCTTACACTGA-ATCTCAAATATCGAGGCAGATGCCATATCCCAGACATGGTC
192529417 TTACACTCGCTCTCAT
128 TTACACTCGCTCTCAT
192529433 ATCTCCCTAG
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
147 39 0.32
148 1 0.01
149 82 0.67
150 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (147 bp):
GGTGCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCACACATCAAAGCCGATACCATGTC
CCAGACATGGTCTTACACTGAATCTCAAATATCGAGGCAGATGCCATATCCCAGACATGGTCTTA
CACTCGCTCTCATCTAC
Found at i:192529435 original size:50 final size:49
Alignment explanation
Indices: 192529150--192529437 Score: 334
Period size: 50 Copynumber: 5.8 Consensus size: 49
192529140 AGGTGTCGAC
** * * * * *
192529150 GCCATGTCCTTGACATGGTCTTACACTG-GCTCACA-CATCAAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGCTCTCATATC-TCGAGGCCGAT
* * * * *
192529198 GCCATGTCCTAGACATGGTCTTACACTGAATCTCAAATATCGAGGCAGAT
1 GCCATGTCCCAGACATGGTCTTACACTG-CTCTCATATCTCGAGGCCGAT
*
192529248 GCCATGTCCTAGACATGGTCTTACACTGACTCTC--ATCTACG-GTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTG-CTCTCATATCT-CGAG-GCCGAT
192529297 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACT-GCTCTCATATCTCGAGGCCGAT
*
192529347 ACCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACT-GCTCTCATATCTCGAGGCCGAT
*
192529397 GCCATATCCCAGACATGGTCTTACACTCGCTCTCATATCTC
1 GCCATGTCCCAGACATGGTCTTACACT-GCTCTCATATCTC
192529438 CCTAGCATCA
Statistics
Matches: 215, Mismatches: 16, Indels: 16
0.87 0.06 0.06
Matches are distributed among these distances:
48 31 0.14
49 38 0.18
50 141 0.66
51 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTGCTCTCATATCTCGAGGCCGAT
Found at i:192530355 original size:148 final size:148
Alignment explanation
Indices: 192530087--192530378 Score: 530
Period size: 148 Copynumber: 2.0 Consensus size: 148
192530077 CCCTGTTTTT
* **
192530087 AATGTTCTTTGCATTTTTGAAATGCTTGAAGCATGATCTACCCATTTCTAGCTATATTTTACTCT
1 AATGTTCTTTGCATTTTTGAAATCCTTGAAGCATGATCTACCCATTTCTAGCTATATTTTAAGCT
*
192530152 AGGGTTCATGTATAAAATTTGACCCATGTGTGACATGCATGTATTATGATGATTAATGGAGGAAT
66 AGGGTTCATGAATAAAATTTGACCCATGTGTGACATGCATGTATTATGATGATTAATGGAGGAAT
192530217 ATGAATGTTTGAGGCATG
131 ATGAATGTTTGAGGCATG
192530235 AATGTTCTTTGCATTTTTGAAATCCTTGAAGCATGATCTACCCATTTCTAGCTATATTTTAAGCT
1 AATGTTCTTTGCATTTTTGAAATCCTTGAAGCATGATCTACCCATTTCTAGCTATATTTTAAGCT
*
192530300 AGGGTTCATGAATAAAATTTGACCCATGTGTGACATGCATGTATTATGATGATTAATGGATGAAT
66 AGGGTTCATGAATAAAATTTGACCCATGTGTGACATGCATGTATTATGATGATTAATGGAGGAAT
*
192530365 ATGTATGTTTGAGG
131 ATGAATGTTTGAGG
192530379 TAAGATAAAC
Statistics
Matches: 138, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
148 138 1.00
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.39
Consensus pattern (148 bp):
AATGTTCTTTGCATTTTTGAAATCCTTGAAGCATGATCTACCCATTTCTAGCTATATTTTAAGCT
AGGGTTCATGAATAAAATTTGACCCATGTGTGACATGCATGTATTATGATGATTAATGGAGGAAT
ATGAATGTTTGAGGCATG
Found at i:192530663 original size:32 final size:32
Alignment explanation
Indices: 192530622--192530687 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
192530612 TTTATAAAAG
192530622 TATGAATTATGGAACTATTTGAACAATGTGAA
1 TATGAATTATGGAACTATTTGAACAATGTGAA
192530654 TATGAATTATGGAACTATTTGAACAATGTGAA
1 TATGAATTATGGAACTATTTGAACAATGTGAA
192530686 TA
1 TA
192530688 ATAAATAAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.41, C:0.06, G:0.18, T:0.35
Consensus pattern (32 bp):
TATGAATTATGGAACTATTTGAACAATGTGAA
Found at i:192535038 original size:6 final size:6
Alignment explanation
Indices: 192535008--192535062 Score: 67
Period size: 6 Copynumber: 9.2 Consensus size: 6
192534998 ATAGGAAAAC
* * *
192535008 AAAATA AACATA AAAA-A AAAGATA AAAATA AAAATA AACATA AACATA
1 AAAATA AAAATA AAAATA AAA-ATA AAAATA AAAATA AAAATA AAAATA
192535056 AAAATA A
1 AAAATA A
192535063 TCGGACTCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
5 4 0.09
6 35 0.81
7 4 0.09
ACGTcount: A:0.78, C:0.05, G:0.02, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:192535060 original size:18 final size:18
Alignment explanation
Indices: 192535011--192535062 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
192535001 GGAAAACAAA
* *
192535011 ATAAACATAAAAAAAAAG
1 ATAAACATAAAAATAAAC
*
192535029 ATAAAAATAAAAATAAAC
1 ATAAACATAAAAATAAAC
192535047 ATAAACATAAAAATAA
1 ATAAACATAAAAATAA
192535063 TCGGACTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (18 bp):
ATAAACATAAAAATAAAC
Found at i:192535062 original size:12 final size:12
Alignment explanation
Indices: 192535008--192535062 Score: 74
Period size: 12 Copynumber: 4.6 Consensus size: 12
192534998 ATAGGAAAAC
192535008 AAAATAAACATA
1 AAAATAAACATA
* *
192535020 AAAAAAAAGATA
1 AAAATAAACATA
*
192535032 AAAATAAAAATA
1 AAAATAAACATA
*
192535044 AACATAAACATA
1 AAAATAAACATA
192535056 AAAATAA
1 AAAATAA
192535063 TCGGACTCAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.78, C:0.05, G:0.02, T:0.15
Consensus pattern (12 bp):
AAAATAAACATA
Found at i:192550123 original size:40 final size:40
Alignment explanation
Indices: 192550078--192550244 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
192550068 CGGAATATAA
192550078 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
192550118 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
192550158 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
192550198 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
192550237 CCGGATAT
1 CCGGATAT
192550245 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:192550228 original size:80 final size:79
Alignment explanation
Indices: 192550078--192550244 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
192550068 CGGAATATAA
* *
192550078 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
192550143 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
192550158 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
192550220 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
192550237 CCGGATAT
1 CCGGATAT
192550245 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:192551093 original size:17 final size:19
Alignment explanation
Indices: 192551070--192551115 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
192551060 AAGAAGCATG
192551070 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
192551088 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
192551106 AATCATGCTC
1 AATCATGCTC
192551116 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:192558112 original size:40 final size:40
Alignment explanation
Indices: 192558067--192558233 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
192558057 CGGAATATAA
192558067 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
192558107 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
192558147 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
192558187 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
192558226 CCGGATAT
1 CCGGATAT
192558234 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:192558217 original size:80 final size:79
Alignment explanation
Indices: 192558067--192558233 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
192558057 CGGAATATAA
* *
192558067 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
192558132 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
192558147 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
192558209 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
192558226 CCGGATAT
1 CCGGATAT
192558234 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:192559081 original size:17 final size:19
Alignment explanation
Indices: 192559058--192559103 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
192559048 AAGAAGCATG
192559058 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
192559076 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
192559094 AATCATGCTC
1 AATCATGCTC
192559104 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:192560917 original size:28 final size:27
Alignment explanation
Indices: 192560841--192560917 Score: 75
Period size: 28 Copynumber: 2.8 Consensus size: 27
192560831 ATTATAGTAT
*
192560841 CGTGGCAAAGCCACTAGTGTCA-GAATA
1 CGTGGCAAAGCCACTAGT-ACAGGAATA
* * * **
192560868 TGTGGCTAAGCCACCAAAACAGGAAATA
1 CGTGGCAAAGCCACTAGTACAGG-AATA
192560896 CGTGGCAAAGCCACTAGTACAG
1 CGTGGCAAAGCCACTAGTACAG
192560918 AACTTCCTCC
Statistics
Matches: 37, Mismatches: 11, Indels: 3
0.73 0.22 0.06
Matches are distributed among these distances:
26 2 0.05
27 14 0.38
28 21 0.57
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (27 bp):
CGTGGCAAAGCCACTAGTACAGGAATA
Found at i:192564973 original size:41 final size:43
Alignment explanation
Indices: 192564884--192565043 Score: 191
Period size: 43 Copynumber: 3.8 Consensus size: 43
192564874 AATGGCAGCA
* *
192564884 TCCCAGAC-GTGGTCTTACACGCAATCACATATCGATGCCACTA
1 TCCCAGACAG-GGTCTTACACGCAATCACATATCGATGCCAATG
*
192564927 TCCCAGACAGGGTCTTACACG-AATCAAATA-CGATGCCAATG
1 TCCCAGACAGGGTCTTACACGCAATCACATATCGATGCCAATG
* * * *
192564968 TCCCAGACATGGTCTTACACGTAATCACATATTGATGCCAACG
1 TCCCAGACAGGGTCTTACACGCAATCACATATCGATGCCAATG
* * * *
192565011 TCCTAGACATGGTCTTACACGAAAACACATATC
1 TCCCAGACAGGGTCTTACACGCAATCACATATC
192565044 AGAAATCCTA
Statistics
Matches: 103, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
41 29 0.28
42 16 0.16
43 57 0.55
44 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
TCCCAGACAGGGTCTTACACGCAATCACATATCGATGCCAATG
Found at i:192565929 original size:9 final size:9
Alignment explanation
Indices: 192565904--192565933 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
192565894 TGTTTTATTA
192565904 TTTACATAT
1 TTTACATAT
192565913 TATTACATAT
1 T-TTACATAT
192565923 TTTACATAT
1 TTTACATAT
192565932 TT
1 TT
192565934 AACCTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (9 bp):
TTTACATAT
Found at i:192571073 original size:28 final size:27
Alignment explanation
Indices: 192571041--192571115 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
192571031 TGAAATGGTT
*
192571041 AAATTCACTAAAATACCCCTAAGTATGA
1 AAATT-ACCAAAATACCCCTAAGTATGA
**
192571069 AAATTACCATCATACCCCTAAGTATGA
1 AAATTACCAAAATACCCCTAAGTATGA
**
192571096 AAATTACCATTATACCCCTA
1 AAATTACCAAAATACCCCTA
192571116 GGGTTAATGT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 38 0.88
28 5 0.12
ACGTcount: A:0.43, C:0.25, G:0.05, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAAGTATGA
Found at i:192571084 original size:27 final size:27
Alignment explanation
Indices: 192571053--192571115 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
192571043 ATTCACTAAA
192571053 ATACCCCTAAGTATGAAAATTACCATC
1 ATACCCCTAAGTATGAAAATTACCATC
*
192571080 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAAGTATGAAAATTACCATC
192571107 ATACCCCTA
1 ATACCCCTA
192571116 GGGTTAATGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.40, C:0.27, G:0.06, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGTATGAAAATTACCATC
Found at i:192571292 original size:27 final size:27
Alignment explanation
Indices: 192571217--192571332 Score: 114
Period size: 27 Copynumber: 4.3 Consensus size: 27
192571207 TGAAGGAAGC
192571217 GTTCTGGTGGCTCTGCCACAAATATCTAT
1 GTTCTGGTGGCTCTGCCACAAATAT-T-T
*
192571246 -TTTTGGTGGCTCTGCCACAAATATTT
1 GTTCTGGTGGCTCTGCCACAAATATTT
* *
192571272 GTTCTGGTGGCAT-TGCTAC-AATATCT
1 GTTCTGGTGGC-TCTGCCACAAATATTT
* * *
192571298 GTATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATTT
192571325 GTTCTGGT
1 GTTCTGGT
192571333 AGCCATGCTG
Statistics
Matches: 76, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 16 0.21
27 36 0.47
28 24 0.32
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.39
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATTT
Found at i:192571307 original size:54 final size:54
Alignment explanation
Indices: 192571217--192571332 Score: 137
Period size: 54 Copynumber: 2.1 Consensus size: 54
192571207 TGAAGGAAGC
* * * *
192571217 GTTCTGGTGGCTCTGCCACAAATATCTATTTTTGGTGGCTCTGCCACAAATATTT
1 GTTCTGGTGGCTCTGCCACAAATATCTATATCTGGTGACTCTGCCAC-AATATCT
* * *
192571272 GTTCTGGTGGCAT-TGCTAC-AATATCTGTATCTGGTGACTCTGTCACAATATCT
1 GTTCTGGTGGC-TCTGCCACAAATATCTATATCTGGTGACTCTGCCACAATATCT
192571325 GTTCTGGT
1 GTTCTGGT
192571333 AGCCATGCTG
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 14 0.26
54 22 0.42
55 16 0.30
56 1 0.02
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.39
Consensus pattern (54 bp):
GTTCTGGTGGCTCTGCCACAAATATCTATATCTGGTGACTCTGCCACAATATCT
Found at i:192575256 original size:29 final size:29
Alignment explanation
Indices: 192575224--192575360 Score: 159
Period size: 29 Copynumber: 4.7 Consensus size: 29
192575214 ATACCCTCCG
** * *
192575224 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
192575253 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
192575282 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
192575311 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
192575340 AGCACGCACACTTAGTGCCAT
1 AGCTCGCACACTTAGTGCCAT
192575361 CTCGTCACCG
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 94 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:192575351 original size:58 final size:58
Alignment explanation
Indices: 192575170--192575358 Score: 177
Period size: 58 Copynumber: 3.3 Consensus size: 58
192575160 TACTCGATTT
* * * *** *
192575170 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
192575228 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
192575286 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
192575344 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
192575359 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 23, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:192585068 original size:2 final size:2
Alignment explanation
Indices: 192585061--192585088 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
192585051 GCTCTTGCAC
192585061 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
192585089 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:192585958 original size:40 final size:40
Alignment explanation
Indices: 192585802--192585986 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
192585792 TCGAATGATG
* * *
192585802 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
192585842 TCCGGACTAAGAT--CGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
192585881 TCCGGACTAAGAT-CCAAAGGCATTTGTGCAAATTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
192585921 TCAGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
192585962 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
192585987 AACGAGTGGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 29 0.24
40 90 0.74
41 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:192596574 original size:46 final size:46
Alignment explanation
Indices: 192596520--192596649 Score: 127
Period size: 47 Copynumber: 2.8 Consensus size: 46
192596510 CACAATCGAT
* * *
192596520 AAGTACCTATACCATGGCCGTAGCCAAATCAAGGTAACTTA-TCCCG
1 AAGTACCTATACCATGGCCGTAGCAAAATCAAGGTAAC-TACTCACA
* ** * *
192596566 GAGTACCTATACCATAACCCATAGCTAAATCAAGGTAACTACTCACA
1 AAGTACCTATACCAT-GGCCGTAGCAAAATCAAGGTAACTACTCACA
* * *
192596613 AAATACTTATACCATGGCCCGTAGAAAAATCAAGGTA
1 AAGTACCTATACCATGG-CCGTAGCAAAATCAAGGTA
192596650 TTTGTGACAC
Statistics
Matches: 66, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
46 16 0.24
47 50 0.76
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.22
Consensus pattern (46 bp):
AAGTACCTATACCATGGCCGTAGCAAAATCAAGGTAACTACTCACA
Found at i:192599257 original size:48 final size:48
Alignment explanation
Indices: 192599186--192600099 Score: 1549
Period size: 48 Copynumber: 19.0 Consensus size: 48
192599176 TGTACAAGAT
192599186 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
192599234 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
192599282 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
192599330 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
192599378 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
192599426 AAATATATGTGTGATATGTATATGTGGTAAAACCGAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
192599474 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
192599522 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
192599570 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
192599618 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
192599666 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
192599714 AAATATATGTGTGATATGTGTATGTGGTAAAACCGAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
192599762 AAATATATGTGTGATATGTATATATGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
192599810 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAAAGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * *
192599858 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCGAGTGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
192599906 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
192599954 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
192600002 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * * *
192600050 AAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
192600098 AA
1 AA
192600100 TGTTGTAACA
Statistics
Matches: 808, Mismatches: 58, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 808 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:192602190 original size:13 final size:13
Alignment explanation
Indices: 192602172--192602196 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
192602162 ACAAATGATA
192602172 AAATTTTCACACG
1 AAATTTTCACACG
192602185 AAATTTTCACAC
1 AAATTTTCACAC
192602197 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:192603799 original size:24 final size:24
Alignment explanation
Indices: 192603756--192603805 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
192603746 AATAAGATTT
*
192603756 AATATTAAATTTAATCTAATATTA
1 AATATTAAATTAAATCTAATATTA
* *
192603780 AATATTAGATTAAATTTAATATTA
1 AATATTAAATTAAATCTAATATTA
192603804 AA
1 AA
192603806 GTGATTTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (24 bp):
AATATTAAATTAAATCTAATATTA
Found at i:192609625 original size:27 final size:27
Alignment explanation
Indices: 192609577--192609687 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
192609567 AGCATGGCTG
* *
192609577 CCAGAACAGATA-ATGTGACAGAGCCA
1 CCAGAACAGAAATATGTGGCAGAGCCA
*
192609603 CTAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGAAATATGTGGCAGAGCCA
* *
192609630 CCAGAATAGAAATATATGGCAGAGCCA
1 CCAGAACAGAAATATGTGGCAGAGCCA
* *
192609657 CCAGATCAGATAAT-TGTGGCATAGCCA
1 CCAGAACAGA-AATATGTGGCAGAGCCA
192609684 CCAG
1 CCAG
192609688 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 10 0.14
27 60 0.82
28 3 0.04
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGAAATATGTGGCAGAGCCA
Found at i:192617425 original size:27 final size:26
Alignment explanation
Indices: 192617388--192617472 Score: 100
Period size: 26 Copynumber: 3.2 Consensus size: 26
192617378 AGCATGGCTG
* *
192617388 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
192617414 CCAGATACAGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
192617442 -CAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
192617468 CCAGA
1 CCAGA
192617473 TCATATAAAG
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 22 0.44
27 19 0.38
28 9 0.18
ACGTcount: A:0.41, C:0.22, G:0.24, T:0.13
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:192619671 original size:7 final size:7
Alignment explanation
Indices: 192619659--192619683 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
192619649 GTTGTCTTCT
192619659 TGTTTGA
1 TGTTTGA
192619666 TGTTTGA
1 TGTTTGA
192619673 TGTTTGA
1 TGTTTGA
192619680 TGTT
1 TGTT
192619684 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:192620612 original size:27 final size:28
Alignment explanation
Indices: 192620556--192620625 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
192620546 AAATTTGTAC
192620556 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
192620584 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
192620611 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
192620626 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:192627518 original size:7 final size:7
Alignment explanation
Indices: 192627506--192627530 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
192627496 GTTGTCTTCT
192627506 TGTTTGA
1 TGTTTGA
192627513 TGTTTGA
1 TGTTTGA
192627520 TGTTTGA
1 TGTTTGA
192627527 TGTT
1 TGTT
192627531 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:192633788 original size:21 final size:21
Alignment explanation
Indices: 192633764--192633809 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
192633754 TAGAAAGAAT
192633764 AAAATAATGA-AAAAAAAAAGG
1 AAAAT-ATGATAAAAAAAAAGG
* *
192633785 AAAATATGATGAAAACAAAGG
1 AAAATATGATAAAAAAAAAGG
192633806 AAAA
1 AAAA
192633810 AAAAAGTGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.72, C:0.02, G:0.15, T:0.11
Consensus pattern (21 bp):
AAAATATGATAAAAAAAAAGG
Found at i:192634049 original size:7 final size:7
Alignment explanation
Indices: 192634037--192634061 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
192634027 GTTGTCTTCT
192634037 TGTTTGA
1 TGTTTGA
192634044 TGTTTGA
1 TGTTTGA
192634051 TGTTTGA
1 TGTTTGA
192634058 TGTT
1 TGTT
192634062 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:192634987 original size:27 final size:28
Alignment explanation
Indices: 192634931--192635000 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
192634921 AAATTTGTAC
192634931 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
192634959 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
192634986 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
192635001 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:192637084 original size:39 final size:39
Alignment explanation
Indices: 192637030--192637246 Score: 371
Period size: 39 Copynumber: 5.6 Consensus size: 39
192637020 ATCATAATTG
192637030 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* **
192637069 TATGTGCTGGAATTATATCCGGACTTCAGGACCATAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
192637108 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAAGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
192637147 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
192637186 TATGTGCTGGAATTTTATCCGGACTTCAGGTACGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
192637225 TATGAGCTGGAATTATATCCGG
1 TATGTGCTGGAATTATATCCGG
192637247 GCTTAAATTA
Statistics
Matches: 166, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 166 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (39 bp):
TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:192644325 original size:27 final size:28
Alignment explanation
Indices: 192644269--192644338 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
192644259 AAATTTGTAC
192644269 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
192644297 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
192644324 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
192644339 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:192644349 original size:27 final size:27
Alignment explanation
Indices: 192644269--192644350 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
192644259 AAATTTGTAC
* *
192644269 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
192644297 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
192644324 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
192644351 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:192652125 original size:27 final size:28
Alignment explanation
Indices: 192652069--192652138 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
192652059 AAATTTGTAC
192652069 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
192652097 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
192652124 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
192652139 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:192652149 original size:27 final size:27
Alignment explanation
Indices: 192652069--192652150 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
192652059 AAATTTGTAC
* *
192652069 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
192652097 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
192652124 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
192652151 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:192656456 original size:19 final size:19
Alignment explanation
Indices: 192656432--192656471 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
192656422 TGTGTTATCA
*
192656432 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
192656451 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
192656470 TA
1 TA
192656472 CACAATTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:192658652 original size:79 final size:81
Alignment explanation
Indices: 192658516--192658698 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
192658506 TCGAATGATG
* *
192658516 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
192658580 CGTGCGAGTTACTA-A
66 CGTGCGAGTTACTATA
* * * **
192658595 TTCCGGGCTAAGT-CTGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
*
192658657 TTTGTGCGAGTTACTATA
64 TTCGTGCGAGTTACTATA
* *
192658675 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
192658699 TGAATGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.66
80 29 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTACTATA
Found at i:192658699 original size:40 final size:39
Alignment explanation
Indices: 192658517--192658700 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
192658507 CGAATGATGT
* * *
192658517 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
192658557 CCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
192658597 CCGGGCTAAGT-CTGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
192658635 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
192658676 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
192658701 AATGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 36 0.29
40 80 0.64
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:192658722 original size:79 final size:79
Alignment explanation
Indices: 192658517--192658731 Score: 194
Period size: 79 Copynumber: 2.7 Consensus size: 79
192658507 CGAATGATGT
** * *
192658517 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AATGAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
192658580 CGTGCGAGTTACTAATT
63 CGTGCGAGTTACTAATA
* * *** *
192658597 CCGGGCTAAGT-CTGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAATGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCATT
*
192658659 TGTGCGAGTTACT-ATAA
63 CGTGCGAGTTACTAAT-A
*
192658676 CCGGGCTATGTCCCGAAGGCATTTGAATGAGTAGCTATATCCGGTTAA-AT-CGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAATGAGTAGCTATATCCGGTTAAGATCCGAAGG
192658732 TACGTGATTC
Statistics
Matches: 109, Mismatches: 17, Indels: 21
0.74 0.12 0.14
Matches are distributed among these distances:
77 6 0.06
78 3 0.03
79 62 0.57
80 38 0.35
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAATGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTCGT
GCGAGTTACTAATA
Found at i:192660387 original size:31 final size:31
Alignment explanation
Indices: 192660347--192660416 Score: 131
Period size: 31 Copynumber: 2.2 Consensus size: 31
192660337 TAAAATATTA
192660347 AAACATTATATGTCATTGCATTATTTACACAT
1 AAAC-TTATATGTCATTGCATTATTTACACAT
192660379 AAACTTATATGTCATTGCATTATTTACACAT
1 AAACTTATATGTCATTGCATTATTTACACAT
192660410 AAACTTA
1 AAACTTA
192660417 CTTCAGTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 34 0.89
32 4 0.11
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.40
Consensus pattern (31 bp):
AAACTTATATGTCATTGCATTATTTACACAT
Found at i:192662931 original size:46 final size:46
Alignment explanation
Indices: 192662878--192663053 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
192662868 TATTTGGGCA
192662878 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
192662924 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
192662971 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
192663017 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
192663054 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:192663033 original size:93 final size:93
Alignment explanation
Indices: 192662874--192663045 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
192662864 GGGATATTTG
* *
192662874 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
192662939 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
192662967 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
192663032 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
192663046 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:192665998 original size:15 final size:15
Alignment explanation
Indices: 192665959--192666028 Score: 83
Period size: 15 Copynumber: 4.8 Consensus size: 15
192665949 GTATCTTGGG
*
192665959 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
192665974 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
192665989 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
*
192666002 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
192666017 TTTCTTTATTCT
1 TTTCTTTATTCT
192666029 TTTCTTGTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
12 2 0.04
13 7 0.15
14 4 0.09
15 31 0.67
16 2 0.04
ACGTcount: A:0.11, C:0.19, G:0.11, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:192666025 original size:28 final size:30
Alignment explanation
Indices: 192665950--192666028 Score: 92
Period size: 28 Copynumber: 2.7 Consensus size: 30
192665940 CATAGTATCG
* * *
192665950 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
*
192665980 TAT-TCTGGATTTCTTTATTC-GG-TTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
192666008 TATCTTGGATTTCTTTATTCT
1 TATCTTGGATTTCTTTATTCT
192666029 TTTCTTGTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
28 22 0.52
29 4 0.10
30 16 0.38
ACGTcount: A:0.11, C:0.18, G:0.14, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:192668424 original size:40 final size:40
Alignment explanation
Indices: 192668358--192668508 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
192668348 AAATTGAATG
* * *
192668358 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
192668397 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
192668437 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
192668477 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
192668509 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:192668522 original size:40 final size:40
Alignment explanation
Indices: 192668395--192668524 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
192668385 ATGCTGGAAA
* * * *
192668395 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
192668435 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
192668475 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
192668515 TTATATCCGG
1 TTATATCCGG
192668525 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:192675868 original size:40 final size:40
Alignment explanation
Indices: 192675783--192675933 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
192675773 AATTGAATGA
* * *
192675783 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
192675823 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
192675864 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
192675903 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
192675934 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:192675947 original size:40 final size:40
Alignment explanation
Indices: 192675820--192675949 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
192675810 ATGCTGGAAA
* * * *
192675820 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
192675860 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
192675900 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
192675940 TTATATCCGG
1 TTATATCCGG
192675950 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:192679097 original size:46 final size:46
Alignment explanation
Indices: 192679047--192679222 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
192679037 TATTTGGGCA
192679047 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
192679093 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
192679140 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
192679186 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
192679223 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:192679202 original size:93 final size:93
Alignment explanation
Indices: 192679043--192679214 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
192679033 TGGATATTTG
* *
192679043 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
192679108 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
192679136 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
192679201 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
192679215 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:192686457 original size:50 final size:50
Alignment explanation
Indices: 192686378--192686558 Score: 197
Period size: 50 Copynumber: 3.6 Consensus size: 50
192686368 ATTGTGAGTA
*
192686378 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTCAAGT
* * * * * *
192686428 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATTCAATGACT-TCGA-T
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA--CGTGTACCAT-ACTGTCAAGT
* * * *
192686479 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACT-GTCAAGT
*
192686529 CATGTGTGTAGTACTAAGTGCAGGCTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA
192686559 TGCATATCAG
Statistics
Matches: 107, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 6 0.06
50 58 0.54
51 29 0.27
52 9 0.08
53 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTCAAGT
Found at i:192686553 original size:101 final size:101
Alignment explanation
Indices: 192686378--192686561 Score: 289
Period size: 101 Copynumber: 1.8 Consensus size: 101
192686368 ATTGTGAGTA
* * *
192686378 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTGAAGTCACATGTGTAGTACT
192686443 AAGTGCAGGCTACTATGCGTATTCAATGACTTCGAT
66 AAGTGCAGGCTACTATGCGTATTCAATGACTTCGAT
* * **
192686479 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCATGTGTGTAGTAC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTGAAGTCACATGTGTAGTAC
192686543 TAAGTGCAGGCTACTATGC
65 TAAGTGCAGGCTACTATGC
192686562 ATATCAGATA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
100 1 0.01
101 74 0.99
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTGAAGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTATTCAATGACTTCGAT
Found at i:192698551 original size:27 final size:26
Alignment explanation
Indices: 192698518--192698630 Score: 104
Period size: 27 Copynumber: 4.2 Consensus size: 26
192698508 CATGGCTGCT
192698518 AGAACAGATATTTTGACAGAGTCACC
1 AGAACAGATATTTTGACAGAGTCACC
*
192698544 AGATACAGATA-TTTGTA-GGAGTGCCACC
1 AGA-ACAGATATTTTG-ACAGAGT--CACC
*
192698572 AGAACAGATATTTGTGGCAGAGTCACC
1 AGAACAGATATTT-TGACAGAGTCACC
* * * *
192698599 AGAACAAATATTTGTGGCATAGCCACC
1 AGAACAGATATTT-TGACAGAGTCACC
192698626 AGAAC
1 AGAAC
192698631 GCTTCCTCCA
Statistics
Matches: 74, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
26 11 0.15
27 48 0.65
28 9 0.12
29 6 0.08
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.22
Consensus pattern (26 bp):
AGAACAGATATTTTGACAGAGTCACC
Found at i:192698610 original size:54 final size:54
Alignment explanation
Indices: 192698518--192698630 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
192698508 CATGGCTGCT
*
192698518 AGAACAGATATTTTGACAGAGTCACCAGATACAGATATTTGTAGG-AGT-GCCACC
1 AGAACAGATATTTTGACAGAGTCACCAGATACAAATATTTGT-GGCA-TAGCCACC
*
192698572 AGAACAGATATTTGTGGCAGAGTCACCAGA-ACAAATATTTGTGGCATAGCCACC
1 AGAACAGATATTT-TGACAGAGTCACCAGATACAAATATTTGTGGCATAGCCACC
192698626 AGAAC
1 AGAAC
192698631 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
53 3 0.06
54 36 0.67
55 15 0.28
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.22
Consensus pattern (54 bp):
AGAACAGATATTTTGACAGAGTCACCAGATACAAATATTTGTGGCATAGCCACC
Found at i:192702860 original size:27 final size:27
Alignment explanation
Indices: 192702754--192702868 Score: 142
Period size: 27 Copynumber: 4.3 Consensus size: 27
192702744 AGCATGGCTG
* *
192702754 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
* * *
192702780 CCAGATACAGATATTTATGGCAAAGACA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
*
192702808 CCAGAACAGATATTTGTGGTAGAGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
*
192702835 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
*
192702862 CTAGAAC
1 CCAGAAC
192702869 GCTTCCTCTA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
26 5 0.07
27 56 0.74
28 15 0.20
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:192707707 original size:11 final size:11
Alignment explanation
Indices: 192707691--192707716 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
192707681 CAAAAACAAA
192707691 CATACATTTTT
1 CATACATTTTT
192707702 CATACATTTTT
1 CATACATTTTT
192707713 CATA
1 CATA
192707717 TCCAAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (11 bp):
CATACATTTTT
Found at i:192710637 original size:68 final size:66
Alignment explanation
Indices: 192710565--192710712 Score: 165
Period size: 67 Copynumber: 2.2 Consensus size: 66
192710555 CATCATGTGT
* * * * *
192710565 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATGCTA-TG-TGTACACCA
1 ACAAGAGAGCTAC-AGA-A-TAT-ATGTAGCTAGATCGCATGCGTGATGCCAGTGAAGGACACCA
192710628 TGTAG
62 TGTAG
* * *
192710633 ACAAGAGAGCTACGGAATATATGTAGCTAGATCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGAATATATGTAGCTAGATCGCATGCGTGATGCCA-GTGAAGGACACCATGT
192710698 AG
65 AG
192710700 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
192710713 GAGATAAACT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 23 0.33
65 3 0.04
66 3 0.04
67 27 0.39
68 13 0.19
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACAGAATATATGTAGCTAGATCGCATGCGTGATGCCAGTGAAGGACACCATGTA
G
Found at i:192712100 original size:24 final size:22
Alignment explanation
Indices: 192712073--192712119 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
192712063 AAACTTCAAT
192712073 ATCTCTTAGTATACTGTTCATATG
1 ATCTCTTAGT-TACT-TTCATATG
* *
192712097 ATCTTTTCGTTACTTTCATATG
1 ATCTCTTAGTTACTTTCATATG
192712119 A
1 A
192712120 AAATAGACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 4 0.19
24 8 0.38
ACGTcount: A:0.23, C:0.17, G:0.11, T:0.49
Consensus pattern (22 bp):
ATCTCTTAGTTACTTTCATATG
Found at i:192713052 original size:39 final size:39
Alignment explanation
Indices: 192713009--192713118 Score: 186
Period size: 39 Copynumber: 2.8 Consensus size: 39
192712999 TATGGTAGCC
*
192713009 CGCACAA-TGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
192713048 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
192713087 CGCACAATTACCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
192713119 TACCCGAACA
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
39 58 0.85
40 10 0.15
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:192720167 original size:24 final size:22
Alignment explanation
Indices: 192720140--192720186 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
192720130 AAACTTCAAT
192720140 ATCTCTTAGTATACTGTTCATATG
1 ATCTCTTAGT-TACT-TTCATATG
* *
192720164 ATCTTTTCGTTACTTTCATATG
1 ATCTCTTAGTTACTTTCATATG
192720186 A
1 A
192720187 AAATAGACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 4 0.19
24 8 0.38
ACGTcount: A:0.23, C:0.17, G:0.11, T:0.49
Consensus pattern (22 bp):
ATCTCTTAGTTACTTTCATATG
Found at i:192721113 original size:39 final size:39
Alignment explanation
Indices: 192721070--192721218 Score: 246
Period size: 39 Copynumber: 3.8 Consensus size: 39
192721060 TATGGTAGCC
*
192721070 CGCACAA-TGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
192721109 CGCACAATTGTCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
192721148 CACACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
192721187 CGCACAATTGCCTTCAGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
192721219 TACCCGAACA
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 94 0.91
40 9 0.09
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:192730311 original size:40 final size:39
Alignment explanation
Indices: 192730151--192730344 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
192730141 TGTGTATGAA
* *
192730151 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
192730190 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
192730229 TGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGCGAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
192730268 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * * *
192730308 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
192730345 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:192730372 original size:79 final size:78
Alignment explanation
Indices: 192730168--192730382 Score: 191
Period size: 78 Copynumber: 2.7 Consensus size: 78
192730158 ATTGTGATAT
* * ** * * * *
192730168 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAATGTG
1 CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGAGTTAAGCCCGAAGGCAAATGTG
* *
192730233 CGAGATATGATAT
66 CGAGATATCATAA
** * * **
192730246 CCGGGCTAAGCCCGAAGGCGATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGAGTTAAG-CCCGAAGGCAAATGT
* *
192730311 GCGGGTTATCATAA
65 GCGAGATATCATAA
* * *
192730325 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-AGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCGATTGAACGAGTAG-TGATATCCGAGTTAAGC-CCGAAGG
192730383 TATGTGATTT
Statistics
Matches: 116, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 46 0.40
79 44 0.38
80 25 0.22
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGAGTTAAGCCCGAAGGCAAATGTG
CGAGATATCATAA
Found at i:192763141 original size:40 final size:39
Alignment explanation
Indices: 192763097--192763222 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
192763087 GGGACTCAAC
*
192763097 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
192763137 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
192763177 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
192763217 CCGGAT
1 CCGGAT
192763223 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:192763181 original size:80 final size:80
Alignment explanation
Indices: 192763036--192763222 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
192763026 GCTACACATT
* * *
192763036 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
192763100 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
192763116 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
192763179 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
192763197 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
192763223 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:192765519 original size:80 final size:80
Alignment explanation
Indices: 192765435--192765583 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
192765425 TATGGTAACC
* * * *
192765435 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
192765499 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
192765515 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
192765580 CCGG
66 CCGG
192765584 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:192765525 original size:40 final size:38
Alignment explanation
Indices: 192765476--192765583 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
192765466 ATCACGATTT
*
192765476 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
192765516 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
192765556 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
192765584 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:192773080 original size:40 final size:40
Alignment explanation
Indices: 192773036--192773221 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
192773026 GCTACTCGTT
* * *
192773036 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
192773076 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
192773116 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
192773156 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
192773197 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
192773222 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:192779608 original size:40 final size:39
Alignment explanation
Indices: 192779443--192779626 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
192779433 AAATTGAATG
* * *
192779443 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
192779483 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
192779523 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
192779563 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
192779602 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
192779627 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:192779609 original size:80 final size:80
Alignment explanation
Indices: 192779487--192779635 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
192779477 GAAATTATAA
* * * *
192779487 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
192779552 TGCGAGTCATTCTAT
66 TGCGAGTCATTCTAT
* * * * * * *
192779567 CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGCATTC
192779631 GTGCG
65 GTGCG
192779636 GGTTACCAAC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATTCTAT
Found at i:192787651 original size:40 final size:39
Alignment explanation
Indices: 192787486--192787669 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
192787476 AAATTGAATG
* * *
192787486 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
192787526 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
192787566 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
192787606 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
192787645 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
192787670 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:192787694 original size:80 final size:81
Alignment explanation
Indices: 192787526--192787714 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
192787516 GCTGGAAATT
* * * *
192787526 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
192787591 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
192787607 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
192787670 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
192787686 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
192787715 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:192796649 original size:40 final size:40
Alignment explanation
Indices: 192796583--192796733 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
192796573 AAATTGAATG
* * *
192796583 ATATCCGGGCTAA-ATCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
192796622 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
192796662 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
192796702 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
192796734 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:192796747 original size:40 final size:40
Alignment explanation
Indices: 192796620--192796749 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
192796610 ATGCTGGAAA
* * * *
192796620 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
192796660 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
192796700 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
192796740 TTATATCCGG
1 TTATATCCGG
192796750 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:192799249 original size:27 final size:27
Alignment explanation
Indices: 192799219--192799339 Score: 158
Period size: 27 Copynumber: 4.5 Consensus size: 27
192799209 CAGCGAGCTG
192799219 CCAGGACAGATATATGTGGCAGAGCCA
1 CCAGGACAGATATATGTGGCAGAGCCA
* *
192799246 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGGACAGATATATGTGGCAGAGCCA
*
192799273 CCA-GATCAGATA-ATTGTGGCATAGCCA
1 CCAGGA-CAGATATA-TGTGGCAGAGCCA
*
192799300 CCAGGACAGATATATGTGGCAGAACCA
1 CCAGGACAGATATATGTGGCAGAGCCA
192799327 CCA-GATCAGATAT
1 CCAGGA-CAGATAT
192799340 GTAACACCCC
Statistics
Matches: 82, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.05
27 75 0.91
28 3 0.04
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (27 bp):
CCAGGACAGATATATGTGGCAGAGCCA
Found at i:192799291 original size:54 final size:55
Alignment explanation
Indices: 192799225--192799338 Score: 178
Period size: 54 Copynumber: 2.1 Consensus size: 55
192799215 GCTGCCAGGA
* *
192799225 CAGAT-ATATGTGGCAGAGCCACCAGAATAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAATATGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAACCACCAGAT
* *
192799279 CAGATAAT-TGTGGCATAGCCACCAGGACAGATATATGTGGCAGAACCACCAGAT
1 CAGATAATATGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAACCACCAGAT
192799333 CAGATA
1 CAGATA
192799339 TGTAACACCC
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 53 0.96
55 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (55 bp):
CAGATAATATGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAACCACCAGAT
Found at i:192800741 original size:40 final size:40
Alignment explanation
Indices: 192800696--192800862 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
192800686 CGGAATATAA
192800696 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
192800736 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
192800776 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
192800816 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
192800855 CCGGATAT
1 CCGGATAT
192800863 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:192804178 original size:26 final size:26
Alignment explanation
Indices: 192804142--192804249 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
192804132 TGAAATGCCG
*
192804142 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
192804168 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
192804194 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
192804220 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
192804246 ATCA
1 ATCA
192804250 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:192809192 original size:27 final size:26
Alignment explanation
Indices: 192809149--192809279 Score: 133
Period size: 27 Copynumber: 4.9 Consensus size: 26
192809139 CACGAGATAC
192809149 AGATAT-TGTGGCAGAGCCACCAGAAT
1 AGATATATGTGGCAGAGCCACCAG-AT
* *
192809175 AGATATACGTGACAGAGCCACCAGAT
1 AGATATATGTGGCAGAGCCACCAGAT
* *
192809201 CAGATA-ATTGTGGCATAGCCACCAGGAC
1 -AGATATA-TGTGGCAGAGCCACCA-GAT
*
192809229 AGATATATGTGGCAGAGCCACTAGAT
1 AGATATATGTGGCAGAGCCACCAGAT
*
192809255 CAGATA-ATTGTGGCATAGCCACCAG
1 -AGATATA-TGTGGCAGAGCCACCAG
192809280 GATGCTTCCT
Statistics
Matches: 87, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
26 12 0.14
27 72 0.83
28 3 0.03
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
AGATATATGTGGCAGAGCCACCAGAT
Found at i:192809280 original size:54 final size:54
Alignment explanation
Indices: 192809143--192809281 Score: 208
Period size: 54 Copynumber: 2.6 Consensus size: 54
192809133 CGAAGTCACG
* * *
192809143 AGATACAGAT-ATTGTGGCAGAGCCACCAGAATAGATATACGTGACAGAGCCACC
1 AGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATACGTGACAGAGCCACC
* * *
192809197 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCACT
1 AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATACGTGACAGAGCCACC
192809251 AGATCAGATAATTGTGGCATAGCCACCAGGA
1 AGATCAGATAATTGTGGCATAGCCACCAGGA
192809282 TGCTTCCTCC
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 73 0.94
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (54 bp):
AGATCAGATAATTGTGGCATAGCCACCAGGACAGATATACGTGACAGAGCCACC
Found at i:192810915 original size:26 final size:26
Alignment explanation
Indices: 192810879--192810986 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
192810869 TGAAATGCCG
*
192810879 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
192810905 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
192810931 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
192810957 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
192810983 ATCA
1 ATCA
192810987 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:192812180 original size:53 final size:54
Alignment explanation
Indices: 192812112--192812318 Score: 184
Period size: 53 Copynumber: 3.8 Consensus size: 54
192812102 TTCCTTTTTA
* * *
192812112 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATAGTATCCTTGCCTTATAG
* * * * * * * *
192812165 AACTCACCATTGCCATGCCTTGGCGTGGTCTTACATGGGATCTTTGCATTATCG
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATAGTATCCTTGCCTTATAG
** * * * * * * *
192812219 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATAATTTCCTTGCCTTGTAA
1 -AACTTACCATTGCCATGCCTTGACATGGTCTTACATAGTATCCTTGCCTTATAG
* *
192812274 AACTTACCAATT-CCATGCCTTGGCATGGTCTTACTTAGTATCCTT
1 AACTTACC-ATTGCCATGCCTTGACATGGTCTTACATAGTATCCTT
192812319 AAACCATAAT
Statistics
Matches: 117, Mismatches: 34, Indels: 5
0.75 0.22 0.03
Matches are distributed among these distances:
53 44 0.38
54 34 0.29
55 39 0.33
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGACATGGTCTTACATAGTATCCTTGCCTTATAG
Found at i:192823248 original size:40 final size:39
Alignment explanation
Indices: 192823122--192823266 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 39
192823112 TGCTGGAAAT
* * * * *
192823122 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * * *
192823161 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-G
* *
192823202 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * *
192823241 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
192823267 CTTGGTGCGG
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 84 0.99
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
Found at i:192823291 original size:80 final size:81
Alignment explanation
Indices: 192823123--192823311 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
192823113 GCTGGAAATT
* * * *
192823123 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
192823188 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
192823204 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
192823267 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
192823283 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
192823312 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:192825921 original size:41 final size:40
Alignment explanation
Indices: 192825875--192826015 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 40
192825865 CCGGGCTAAG
* * *
192825875 TCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAAT
1 TCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTCAAT
* * * *
192825916 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAG
1 TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTCAAT
* * *
192825956 TCCCGAAGGCATTCGTGCGAGTTACTAAATTCAGG-CTAAT
1 TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTC-AAT
**
192825996 TCCCGAAGGCAACTGTGCGA
1 TCCCGAAGGCATTTGTGCGA
192826016 ATCACTATAA
Statistics
Matches: 82, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
40 65 0.79
41 17 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTCAAT
Found at i:192826004 original size:80 final size:81
Alignment explanation
Indices: 192825865--192826015 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 81
192825855 CGAATGGTGT
* * * * **
192825865 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCAGGCTCAATTCCCGAAGGCAACT
192825930 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * *
192825946 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATTCAGGCT-AATTCCCGAAGGCAAC
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAA-TCAGGCTCAATTCCCGAAGGCAAC
192826009 TGTGCGA
65 TGTGCGA
192826016 ATCACTATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
80 30 0.50
81 30 0.50
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCAGGCTCAATTCCCGAAGGCAACT
GTGCGAGTTACCAAAA
Found at i:192828225 original size:30 final size:30
Alignment explanation
Indices: 192828189--192828289 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 30
192828179 GACAAGATTG
* * *
192828189 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
192828219 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
192828247 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
192828276 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
192828290 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
29 20 0.32
30 19 0.31
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:192828283 original size:29 final size:29
Alignment explanation
Indices: 192828189--192828289 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
192828179 GACAAGATTG
* * * *
192828189 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTGAAAA-TATATA
*
192828219 GCACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAG-TTGAAAATATATA
*
192828247 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
192828276 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
192828290 GATTCACTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 22 0.36
30 15 0.25
31 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAATATATA
Found at i:192834464 original size:6 final size:6
Alignment explanation
Indices: 192834453--192834511 Score: 84
Period size: 6 Copynumber: 9.7 Consensus size: 6
192834443 CCAATCTTTC
*
192834453 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTATTA TTTTTT TATTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT-TTA TTTTTA T-TTTTA
192834503 -TTTTA TTTT
1 TTTTTA TTTT
192834512 AGTTAAATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
5 5 0.10
6 33 0.69
7 10 0.21
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:192834468 original size:5 final size:5
Alignment explanation
Indices: 192834454--192834512 Score: 57
Period size: 5 Copynumber: 11.0 Consensus size: 5
192834444 CAATCTTTCT
*
192834454 TTTTA TTTTTA TTTTTA TTTTTA TTTT- TATTTA TTATTT TTTTA TTTTA
1 TTTTA -TTTTA -TTTTA -TTTTA TTTTA T-TTTA TT-TTA TTTTA TTTTA
192834503 TTTTA TTTTA
1 TTTTA TTTTA
192834513 GTTAAATATT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
4 1 0.02
5 25 0.52
6 22 0.46
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:192835601 original size:118 final size:117
Alignment explanation
Indices: 192835376--192835587 Score: 388
Period size: 118 Copynumber: 1.8 Consensus size: 117
192835366 TGTTTTCCAT
*
192835376 GGTTATGAGTACAGCTTAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTC
1 GGTTATGAGTACAGCTAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTC
192835441 TACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCACTAGCCGA
66 TACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCACTAGCCGA
**
192835493 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCT-AAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
192835558 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
65 CTACTTCGCGTCAAAAGGTTGTGTGACGTG
192835588 TTGGGTAAAA
Statistics
Matches: 91, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
117 14 0.15
118 77 0.85
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (117 bp):
GGTTATGAGTACAGCTAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTC
TACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCACTAGCCGA
Found at i:192835737 original size:1 final size:1
Alignment explanation
Indices: 192835731--192835777 Score: 76
Period size: 1 Copynumber: 47.0 Consensus size: 1
192835721 AATAAAATTT
* *
192835731 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
192835778 TAAGTACTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.96, C:0.00, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Found at i:192847245 original size:20 final size:20
Alignment explanation
Indices: 192847209--192847250 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
192847199 GAAAGAAAAA
* *
192847209 AAAAGGAAGAGGAGGGAGAG
1 AAAAGAAAGAGGAGGGAAAG
192847229 AAAAGAAAGAGCG-GGGAAAG
1 AAAAGAAAGAG-GAGGGAAAG
192847249 AA
1 AA
192847251 GAGAGGGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.55, C:0.02, G:0.43, T:0.00
Consensus pattern (20 bp):
AAAAGAAAGAGGAGGGAAAG
Found at i:192847396 original size:25 final size:25
Alignment explanation
Indices: 192847368--192847432 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
192847358 CATCCCGAAG
*
192847368 TATAGCCC-TCTCGAGCTTCCCGTTA
1 TATAGCCCTTC-CGAGCTTCCCATTA
**
192847393 TATAGTTCTTCCGAGCTTCCCATTA
1 TATAGCCCTTCCGAGCTTCCCATTA
* *
192847418 -ATAGCTCTTCGGAGC
1 TATAGCCCTTCCGAGC
192847433 ATCTCGATCG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 13 0.38
25 19 0.56
26 2 0.06
ACGTcount: A:0.18, C:0.31, G:0.17, T:0.34
Consensus pattern (25 bp):
TATAGCCCTTCCGAGCTTCCCATTA
Found at i:192847426 original size:24 final size:25
Alignment explanation
Indices: 192847379--192847432 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
192847369 ATAGCCCTCT
* *
192847379 CGAGCTTCCCGTTATATAGTTCTTC
1 CGAGCTTCCCATTATATAGCTCTTC
192847404 CGAGCTTCCCATTA-ATAGCTCTTC
1 CGAGCTTCCCATTATATAGCTCTTC
*
192847428 GGAGC
1 CGAGC
192847433 ATCTCGATCG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.33
Consensus pattern (25 bp):
CGAGCTTCCCATTATATAGCTCTTC
Found at i:192858290 original size:11 final size:11
Alignment explanation
Indices: 192858260--192858293 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
192858250 ATCAAGAATG
*
192858260 AAAGAATAAAT
1 AAAGAAAAAAT
192858271 AAA-AAAAAAT
1 AAAGAAAAAAT
192858281 AAAGAAAAAAT
1 AAAGAAAAAAT
192858292 AA
1 AA
192858294 CTAGTGAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (11 bp):
AAAGAAAAAAT
Found at i:192862294 original size:120 final size:120
Alignment explanation
Indices: 192862054--192862324 Score: 397
Period size: 120 Copynumber: 2.2 Consensus size: 120
192862044 TCAGTTTTTT
* *
192862054 AATCAGTTTTTAGTTTTAATTTATTTATAAAATCTTTTTTAAATTTTTTTTCCCTTTTTCCAAAA
1 AATCA-TTTTTAGTTTTAATTTATTTATAAAATCTTTTATAAATTCTTTTTCCCTTTTTCCAAAA
*** *
192862119 GTATTTAAGACTTTTAATAAATATCTATCACTACAAATAACCATTCAATGCAAAAA
65 GTATTTAAGACTCGCAATAAATATCTATCACTACAAATAACCATTCAATGAAAAAA
192862175 AATCACTTTTTAGTTTTAATTTATTTATAAAATCTTTTATAAGATTCTTTTT-CCTTTTTGCC-A
1 AATCA-TTTTTAGTTTTAATTTATTTATAAAATCTTTTATAA-ATTCTTTTTCCCTTTTT-CCAA
* *
192862238 AA-TATTTAAGAGTCGCAATAAATATCTATCACTACAAATAACCATTCAATTAAAAAA
63 AAGTATTTAAGACTCGCAATAAATATCTATCACTACAAATAACCATTCAATGAAAAAA
192862295 AATCATTTTTAGTTTTAATTTCA-TTATAAA
1 AATCATTTTTAGTTTTAATTT-ATTTATAAA
192862325 TAATAAATTA
Statistics
Matches: 138, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
119 23 0.17
120 55 0.40
121 50 0.36
122 10 0.07
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (120 bp):
AATCATTTTTAGTTTTAATTTATTTATAAAATCTTTTATAAATTCTTTTTCCCTTTTTCCAAAAG
TATTTAAGACTCGCAATAAATATCTATCACTACAAATAACCATTCAATGAAAAAA
Found at i:192863344 original size:27 final size:27
Alignment explanation
Indices: 192863311--192863413 Score: 161
Period size: 27 Copynumber: 3.8 Consensus size: 27
192863301 AGGGGGTGTG
*
192863311 GTGCCTATCTGATAGGCGACATTGGTT
1 GTGCCTATCTGATAGGCGGCATTGGTT
192863338 GTGCCTATCTGATAGGCGGCATTGGTT
1 GTGCCTATCTGATAGGCGGCATTGGTT
*
192863365 GTGCCTATCTGATAGGCGGCATTGATT
1 GTGCCTATCTGATAGGCGGCATTGGTT
* * *
192863392 GTGCTTATTTGATAGGCAGCAT
1 GTGCCTATCTGATAGGCGGCAT
192863414 ACCTAGTATA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.18, C:0.17, G:0.30, T:0.34
Consensus pattern (27 bp):
GTGCCTATCTGATAGGCGGCATTGGTT
Found at i:192869278 original size:30 final size:30
Alignment explanation
Indices: 192869242--192869342 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
192869232 GACAAGATTG
* * *
192869242 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
192869272 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
192869300 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
192869329 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
192869343 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:192869354 original size:29 final size:28
Alignment explanation
Indices: 192869271--192869346 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
192869261 AAAATTGTAC
* *
192869271 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
192869299 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
192869328 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
192869347 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:192877126 original size:30 final size:30
Alignment explanation
Indices: 192877090--192877190 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
192877080 GACAAGATTG
* * *
192877090 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
192877120 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
192877148 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
192877177 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
192877191 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:192877202 original size:29 final size:28
Alignment explanation
Indices: 192877119--192877194 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
192877109 AAAATTGTAC
* *
192877119 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
192877147 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
192877176 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
192877195 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:192878999 original size:40 final size:39
Alignment explanation
Indices: 192878839--192879001 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
192878829 TGTGTATGAA
* *
192878839 TGTGCGAATTGTGAGATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
192878878 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
192878917 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
192878956 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
192878996 TGTGCG
1 TGTGCG
192879002 GGTTACCATA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 96 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:192879017 original size:40 final size:39
Alignment explanation
Indices: 192878839--192879032 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
192878829 TGTGTATGAA
* * *
192878839 TGTGCGAATTGTGAGATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
192878878 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
192878917 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
192878956 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
192878996 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
192879033 GTTTGAACGA
Statistics
Matches: 137, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 96 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:192880666 original size:27 final size:27
Alignment explanation
Indices: 192880635--192880690 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
192880625 TAGAATACTT
192880635 TGGTTTACAAAATTAGCAAAATACCCC
1 TGGTTTACAAAATTAGCAAAATACCCC
** *
192880662 TGGTTTGTAAAATTATCAAAATACCCC
1 TGGTTTACAAAATTAGCAAAATACCCC
192880689 TG
1 TG
192880691 TAGGGTAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (27 bp):
TGGTTTACAAAATTAGCAAAATACCCC
Found at i:192880710 original size:27 final size:27
Alignment explanation
Indices: 192880680--192880866 Score: 232
Period size: 27 Copynumber: 6.9 Consensus size: 27
192880670 AAAATTATCA
* *
192880680 AAATACCCCTGTAGGGTAGAAATATTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
192880707 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
*
192880734 AAATACCCCTGTAGGGTAGATTTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
192880761 AAATATCCTTGTAGGGTAGAAATACCT-
1 AAATACCCCTGTAGGGTAGAATTA-CTG
192880788 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
192880815 AAATACTCCTGTAAGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * * *
192880842 AGATAACCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
192880867 CATTTTACCC
Statistics
Matches: 137, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 133 0.97
28 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:192880717 original size:54 final size:54
Alignment explanation
Indices: 192880653--192880839 Score: 195
Period size: 54 Copynumber: 3.5 Consensus size: 54
192880643 AAAATTAGCA
** * *
192880653 AAATACCCCTGGT-TTGTAAAATTATCAAAATACCCCTGTAGGGTAGAAATATTG
1 AAATACCCCTGGTAGGGTAAAATTA-CAAAATACCCCTGTAGGGTAGAATTACTG
* *
192880707 AAATACCCCT-GTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGATTTACTG
1 AAATACCCCTGGTAGGGTAAAATTAC-AAAATACCCCTGTAGGGTAGAATTACTG
* * *
192880761 AAATA-TCCTTGTAGGGTAGAAA-TACCTAAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGGTAGGGTA-AAATTA-CAAAATACCCCTGTAGGGTAGAATTACTG
* * *
192880815 AAATACTCCT-GTAAGGTAGAATTAC
1 AAATACCCCTGGTAGGGTAAAATTAC
192880840 TGAGATAACC
Statistics
Matches: 114, Mismatches: 12, Indels: 15
0.81 0.09 0.11
Matches are distributed among these distances:
53 9 0.08
54 98 0.86
55 7 0.06
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (54 bp):
AAATACCCCTGGTAGGGTAAAATTACAAAATACCCCTGTAGGGTAGAATTACTG
Found at i:192881156 original size:27 final size:26
Alignment explanation
Indices: 192881111--192881163 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
192881101 CCTCGCTGCA
*
192881111 TTCTGGTGGCCTCGCCACATATATCTG
1 TTCTGGTGACCTCGCCACA-ATATCTG
* *
192881138 TTCTGGTGACTTCGTCACAATATCTG
1 TTCTGGTGACCTCGCCACAATATCTG
192881164 GCAGCCTCGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (26 bp):
TTCTGGTGACCTCGCCACAATATCTG
Found at i:192881397 original size:6 final size:6
Alignment explanation
Indices: 192881388--192881636 Score: 145
Period size: 6 Copynumber: 40.3 Consensus size: 6
192881378 TTGCATTGAC
* * *
192881388 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTA ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
192881438 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
192881487 ATTCTG -TTACCTA ATTTTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
192881537 ATACTA ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
192881586 -TCACCTG ATTTTG ATTTTG ATTCTA ATTCTC ATTTTG ATTCT- AGTTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
192881635 AT
1 AT
192881637 AATGTTTTTT
Statistics
Matches: 187, Mismatches: 33, Indels: 46
0.70 0.12 0.17
Matches are distributed among these distances:
5 14 0.07
6 144 0.77
7 19 0.10
8 10 0.05
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:192881419 original size:25 final size:25
Alignment explanation
Indices: 192881388--192881576 Score: 160
Period size: 25 Copynumber: 7.6 Consensus size: 25
192881378 TTGCATTGAC
192881388 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
* * *
192881413 ATACTGATTCTAATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTG
*
192881438 ATTCTGATTCTGGTTCTGATT--CTG
1 ATTCTGATTCTGATTCTG-TTACCTG
*
192881462 ATTCTG-TTACCTGATACTGATT--CTG
1 ATTCTGATT--CTGATTCTG-TTACCTG
* *
192881487 ATTCTG-TTACCTAATTTTGATT--CTG
1 ATTCTGATT--CTGATTCTG-TTACCTG
*
192881512 GTTCTGATTCTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
* * *
192881537 ATACTAATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTG
192881562 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
192881577 TTGATTCTGT
Statistics
Matches: 137, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
23 4 0.03
24 15 0.11
25 114 0.83
26 4 0.03
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTG
Found at i:192881457 original size:37 final size:37
Alignment explanation
Indices: 192881410--192881492 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
192881400 ATTCTGTTAC
* *
192881410 CTGATACTGATTCTAATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTAATTCTGTTACCTAATACTGATT
* * *
192881447 CTGGTTCTGATTCTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTAATTCTGTTACCTAATACTGATT
192881484 CTGATTCTG
1 CTGATTCTG
192881493 TTACCTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTAATTCTGTTACCTAATACTGATT
Found at i:192881491 original size:62 final size:62
Alignment explanation
Indices: 192881389--192881585 Score: 349
Period size: 62 Copynumber: 3.2 Consensus size: 62
192881379 TGCATTGACA
*
192881389 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTAATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
*
192881451 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTTTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
* *
192881513 TTCTGATTCTGATTCTGTTACCTGATACTAATTCTGATTCTGTTACCTAATTCTGATTCTGA
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
*
192881575 TTTTGATTCTG
1 TTCTGATTCTG
192881586 TCACCTGATT
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 129 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
Found at i:192881547 original size:37 final size:37
Alignment explanation
Indices: 192881472--192881554 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
192881462 ATTCTGTTAC
* ** *
192881472 CTGATACTGATTCTGATTCTGTTACCTAATTTTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTAATT
* *
192881509 CTGGTTCTGATTCTGATTCTGTTACCTGATACTAATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTAATT
192881546 CTGATTCTG
1 CTGATTCTG
192881555 TTACCTAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATACTAATT
Found at i:192883942 original size:27 final size:27
Alignment explanation
Indices: 192883912--192884030 Score: 132
Period size: 27 Copynumber: 4.4 Consensus size: 27
192883902 GTAGGGAAAT
*
192883912 CAGTCATTTTACATTACAGGGGTATTA
1 CAGTCATTTTACCTTACAGGGGTATTA
* * *
192883939 CAGTCATTTTTCCCTACAGAGGTATTA
1 CAGTCATTTTACCTTACAGGGGTATTA
*
192883966 CAGTCATTTTACCTTATAGGGGTATTTA
1 CAGTCATTTTACCTTACAGGGGTA-TTA
* ** *
192883994 -AGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCTTACAGGGGTATTA
*
192884020 CGGTCATTTTA
1 CAGTCATTTTA
192884031 TCTCATAAGG
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.03
27 73 0.94
28 3 0.04
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.40
Consensus pattern (27 bp):
CAGTCATTTTACCTTACAGGGGTATTA
Done.