Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 617 of 770
Found at i:193195569 original size:14 final size:14
Alignment explanation
Indices: 193195550--193195578 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
193195540 TACAATATAT
193195550 ATAAGAATTATACG
1 ATAAGAATTATACG
193195564 ATAAGAATTATACG
1 ATAAGAATTATACG
193195578 A
1 A
193195579 ATCCATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:193198371 original size:13 final size:15
Alignment explanation
Indices: 193198346--193198385 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
193198336 TATTTTATTA
193198346 AATAAATATTAAATT
1 AATAAATATTAAATT
193198361 AA-AAA-ATTAAATT
1 AATAAATATTAAATT
193198374 AATAAATATTAA
1 AATAAATATTAA
193198386 TAAATTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAATATTAAATT
Found at i:193210136 original size:12 final size:12
Alignment explanation
Indices: 193210119--193210143 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
193210109 CAGAGGCTAT
193210119 TAACAATATTTA
1 TAACAATATTTA
193210131 TAACAATATTTA
1 TAACAATATTTA
193210143 T
1 T
193210144 GTTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TAACAATATTTA
Found at i:193212598 original size:30 final size:30
Alignment explanation
Indices: 193212562--193212622 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
193212552 ATCCCCGATT
193212562 GGATCGGGGGCAAACGCCTACGAAAAGATC
1 GGATCGGGGGCAAACGCCTACGAAAAGATC
193212592 GGATCGGGGGCAAACGCCTACGAAAAGATC
1 GGATCGGGGGCAAACGCCTACGAAAAGATC
193212622 G
1 G
193212623 CTTGGATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.23, G:0.34, T:0.10
Consensus pattern (30 bp):
GGATCGGGGGCAAACGCCTACGAAAAGATC
Found at i:193212644 original size:21 final size:20
Alignment explanation
Indices: 193212615--193212653 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
193212605 ACGCCTACGA
193212615 AAAGATCGCTTGGATTTAAG
1 AAAGATCGCTTGGATTTAAG
193212635 AAAGAGTCGCTTGGATTTA
1 AAAGA-TCGCTTGGATTTA
193212654 TCCATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
AAAGATCGCTTGGATTTAAG
Found at i:193212846 original size:15 final size:14
Alignment explanation
Indices: 193212825--193212860 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
193212815 TTATCATTTC
*
193212825 AATATATAATTTAA
1 AATATATAAATTAA
193212839 ATATATATAAATTAA
1 A-ATATATAAATTAA
193212854 AATATAT
1 AATATAT
193212861 TAATAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
AATATATAAATTAA
Found at i:193212856 original size:16 final size:15
Alignment explanation
Indices: 193212826--193212864 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
193212816 TATCATTTCA
*
193212826 ATATATAATTTAAAT
1 ATATATAATTAAAAT
193212841 ATATATAAATTAAAAT
1 ATATAT-AATTAAAAT
193212857 ATAT-TAAT
1 ATATATAAT
193212865 AATATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 7 0.32
16 12 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATATATAATTAAAAT
Found at i:193212878 original size:24 final size:25
Alignment explanation
Indices: 193212841--193212894 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
193212831 TAATTTAAAT
193212841 ATATATAAATTAAA-ATATATTAATA
1 ATATATAAATTAAATA-ATATTAATA
*
193212866 ATATTTAAA-TAAATAATATTAATA
1 ATATATAAATTAAATAATATTAATA
193212890 ATATA
1 ATATA
193212895 GAAAGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
ATATATAAATTAAATAATATTAATA
Found at i:193221811 original size:40 final size:40
Alignment explanation
Indices: 193221733--193221889 Score: 158
Period size: 40 Copynumber: 4.0 Consensus size: 40
193221723 TTCGAATGAT
* * * *
193221733 ATCCGGGCTAAG-TCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGC-GAGTTACTAA
* *
193221772 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
193221812 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
193221852 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
193221890 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 12 0.12
40 79 0.82
41 5 0.05
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:193221910 original size:80 final size:79
Alignment explanation
Indices: 193221733--193221919 Score: 202
Period size: 80 Copynumber: 2.3 Consensus size: 79
193221723 TTCGAATGAT
* *
193221733 ATCCGGGCTAAGTCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATAC
1 ATCCGGGCTAAGTCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATAC
193221798 GTGCGAGTTACTAA
66 GTGCGAGTTACTAA
* ** *
193221812 ATCCGGACTAAGATCCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGGC
1 ATCCGGGCTAAG-TCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGGC
* *
193221874 ATTCGTGCGAGTTACTGTA
62 ATACGTGCGAGTTACT-AA
*
193221893 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGT-CCGAAGGC-TTTGA
193221920 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
79 13 0.14
80 69 0.76
81 9 0.10
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATAC
GTGCGAGTTACTAA
Found at i:193223683 original size:13 final size:13
Alignment explanation
Indices: 193223665--193223689 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
193223655 TGGGCTCACA
193223665 TGCCCGTGTGGTT
1 TGCCCGTGTGGTT
193223678 TGCCCGTGTGGT
1 TGCCCGTGTGGT
193223690 CCACACTCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.24, G:0.40, T:0.36
Consensus pattern (13 bp):
TGCCCGTGTGGTT
Found at i:193234590 original size:116 final size:115
Alignment explanation
Indices: 193234384--193234611 Score: 411
Period size: 116 Copynumber: 2.0 Consensus size: 115
193234374 CAGTAGTCCA
* *
193234384 AATATCTAAAGGTATAAAGTTAATGAGGGTAAAATGAAGTAGTTTTGCAAAAGTGAAATAAAAAT
1 AATATCTAAAGGTATAAAGTTAATGAAGGTAAAATGAAGTAGTTTTGCAAAAGTGAAACAAAAAT
* *
193234449 ATGAAGTTTTTCGCTAAGTCTTGGCATTGATTATGAAAAGATATAAAGTT
66 ATGAAGATTTTCGCTAAGTCCTGGCATTGATTATGAAAAGATATAAAGTT
193234499 AATATCTAAAGGTATAAAGTTAATGAAGGTACAAATGAAGTAGTTTTGCAAAAGTGAAACAAAAA
1 AATATCTAAAGGTATAAAGTTAATGAAGGTA-AAATGAAGTAGTTTTGCAAAAGTGAAACAAAAA
193234564 TATGAAGATTTTCGCTAAGTCCTGGCATTGATTATGAAAAGATATAAA
65 TATGAAGATTTTCGCTAAGTCCTGGCATTGATTATGAAAAGATATAAA
193234612 ATTCTTTTGT
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
115 30 0.28
116 78 0.72
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (115 bp):
AATATCTAAAGGTATAAAGTTAATGAAGGTAAAATGAAGTAGTTTTGCAAAAGTGAAACAAAAAT
ATGAAGATTTTCGCTAAGTCCTGGCATTGATTATGAAAAGATATAAAGTT
Found at i:193236897 original size:2 final size:2
Alignment explanation
Indices: 193236892--193236944 Score: 90
Period size: 2 Copynumber: 27.0 Consensus size: 2
193236882 AAAAAATGTT
193236892 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
193236933 TA TA TT TA TA TA
1 TA TA TA TA TA TA
193236945 AATGAAATAA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:193237891 original size:29 final size:29
Alignment explanation
Indices: 193237858--193237921 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
193237848 GGATAGATTG
*
193237858 AAAGATTGAAGATTTGAAGTTGGCTGGAT
1 AAAGATTGAAGATTTGAAATTGGCTGGAT
*
193237887 AAAGATTGAATATTTGAAATTGGCTGGAT
1 AAAGATTGAAGATTTGAAATTGGCTGGAT
193237916 AAAGAT
1 AAAGAT
193237922 CAAATTATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.39, C:0.03, G:0.27, T:0.31
Consensus pattern (29 bp):
AAAGATTGAAGATTTGAAATTGGCTGGAT
Found at i:193237963 original size:19 final size:18
Alignment explanation
Indices: 193237928--193237967 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
193237918 AGATCAAATT
193237928 ATTTTTTATATTGTTAAA
1 ATTTTTTATATTGTTAAA
*
193237946 ATTTTTTA-ATTAGTTTAA
1 ATTTTTTATATT-GTTAAA
193237964 ATTT
1 ATTT
193237968 GATTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
ATTTTTTATATTGTTAAA
Found at i:193238209 original size:7 final size:7
Alignment explanation
Indices: 193238197--193238225 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
193238187 ACCTTCCAAG
193238197 CCCTTTC
1 CCCTTTC
193238204 CCCTTTC
1 CCCTTTC
193238211 CCCTTTC
1 CCCTTTC
193238218 CCCTTTC
1 CCCTTTC
193238225 C
1 C
193238226 ACAATTTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (7 bp):
CCCTTTC
Found at i:193238377 original size:7 final size:7
Alignment explanation
Indices: 193238365--193238390 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
193238355 ATATTTTACA
193238365 ATTCGGT
1 ATTCGGT
193238372 ATTCGGT
1 ATTCGGT
193238379 ATTCGGT
1 ATTCGGT
193238386 ATTCG
1 ATTCG
193238391 CTATCTCTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.27, T:0.42
Consensus pattern (7 bp):
ATTCGGT
Found at i:193243119 original size:28 final size:28
Alignment explanation
Indices: 193243087--193243185 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
193243077 GCAATAAGCC
*
193243087 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
193243115 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
193243143 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
193243172 CGCACACTTAGTGC
1 CGCACACTTAGTGC
193243186 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:193250502 original size:29 final size:29
Alignment explanation
Indices: 193250460--193250533 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
193250450 GCACACTTAG
*
193250460 TGCACACTTAGTGCCATATATTTCCAGCA
1 TGCACACTTAGTGCCACATATTTCCAGCA
193250489 TGCACACTTAGTGCCACATATTTCCAGCA
1 TGCACACTTAGTGCCACATATTTCCAGCA
*
193250518 CGCACACTTAGTGCCA
1 TGCACACTTAGTGCCA
193250534 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
TGCACACTTAGTGCCACATATTTCCAGCA
Found at i:193258359 original size:29 final size:29
Alignment explanation
Indices: 193258323--193258400 Score: 140
Period size: 29 Copynumber: 2.7 Consensus size: 29
193258313 GTGCCGTATT
193258323 CAGC-TGCACACTTAGTGCCATATATTTC
1 CAGCATGCACACTTAGTGCCATATATTTC
193258351 CAGCATGCACACTTAGTGCCATATATTTC
1 CAGCATGCACACTTAGTGCCATATATTTC
*
193258380 CAGCACGCACACTTAGTGCCA
1 CAGCATGCACACTTAGTGCCA
193258401 ATCTCGTCAC
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
28 4 0.08
29 44 0.92
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CAGCATGCACACTTAGTGCCATATATTTC
Found at i:193260807 original size:25 final size:25
Alignment explanation
Indices: 193260779--193260826 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
193260769 AAGAGAAAAA
193260779 ATGAAAAAAGGGTGTCAAGATTAAG
1 ATGAAAAAAGGGTGTCAAGATTAAG
*
193260804 ATGAAAAATGGGTGTCAAGATTA
1 ATGAAAAAAGGGTGTCAAGATTA
193260827 CTCATTATCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.46, C:0.04, G:0.27, T:0.23
Consensus pattern (25 bp):
ATGAAAAAAGGGTGTCAAGATTAAG
Found at i:193261881 original size:43 final size:43
Alignment explanation
Indices: 193261834--193261924 Score: 98
Period size: 43 Copynumber: 2.1 Consensus size: 43
193261824 CAAACGTTGA
*
193261834 TAAAGAACATGA-TCTTTAGCAACATTTTT-ATGAGAAGTGCCGC
1 TAAAGAACAT-ATTCTTTAGCAACATTTTTAAT-AGAAGCGCCGC
** **
193261877 TAAAGGTCATATTCTTTAGCGGCATTTTTAATAGAAGCGCCGC
1 TAAAGAACATATTCTTTAGCAACATTTTTAATAGAAGCGCCGC
193261920 -AAAGA
1 TAAAGA
193261925 TAATGTTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
42 5 0.12
43 33 0.82
44 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (43 bp):
TAAAGAACATATTCTTTAGCAACATTTTTAATAGAAGCGCCGC
Found at i:193265288 original size:40 final size:40
Alignment explanation
Indices: 193265213--193265393 Score: 271
Period size: 40 Copynumber: 4.6 Consensus size: 40
193265203 AACCCAAGTA
*
193265213 CCTTCGGGATTTAG-CCGGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATG
* *
193265252 CCTTCGAGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
193265292 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
193265332 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
193265372 CCTTC-GGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
193265394 CATCCGAATA
Statistics
Matches: 132, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 29 0.22
40 102 0.77
41 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:193266773 original size:13 final size:13
Alignment explanation
Indices: 193266755--193266780 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
193266745 ATTTTTATTT
193266755 TTAACATAAAATA
1 TTAACATAAAATA
193266768 TTAACATAAAATA
1 TTAACATAAAATA
193266781 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:193270952 original size:105 final size:105
Alignment explanation
Indices: 193270745--193270967 Score: 380
Period size: 105 Copynumber: 2.1 Consensus size: 105
193270735 TCATATTTCT
*
193270745 GGAGAGACAAGA--AGTTTGTGCAACTTTGAAACTATGTTATCCATTTTGAAAAAAAAAGTTTGA
1 GGAGAGA-AAGAGTAGTTTGTGCAACTTTGAAACTATGTTACCCATTTTGAAAAAAAAAGTTTGA
*
193270808 GAAAAAGATTAGAGTACTTTTAAAGCAAAGAAAATGAGATG
65 GAAAAAGATTAGAGTACTTTTAAAGCAAAGAAAAAGAGATG
193270849 GGAGAG-AAGAGTAGTTTGTGCAACTTTGAAACTATGTTACCCATTTTGAAAAAAAAAAGTTTGA
1 GGAGAGAAAGAGTAGTTTGTGCAACTTTGAAACTATGTTACCCATTTTG-AAAAAAAAAGTTTGA
*
193270913 GAAAAAGATTAGAGTTCTTTTAAAGCAAAGAAAAAGAGATG
65 GAAAAAGATTAGAGTACTTTTAAAGCAAAGAAAAAGAGATG
193270954 GGAGAGAAAGAGTA
1 GGAGAGAAAGAGTA
193270968 AAAAGGTTTT
Statistics
Matches: 112, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
102 4 0.04
104 41 0.37
105 60 0.54
106 7 0.06
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (105 bp):
GGAGAGAAAGAGTAGTTTGTGCAACTTTGAAACTATGTTACCCATTTTGAAAAAAAAAGTTTGAG
AAAAAGATTAGAGTACTTTTAAAGCAAAGAAAAAGAGATG
Found at i:193272720 original size:29 final size:29
Alignment explanation
Indices: 193272436--193272721 Score: 183
Period size: 29 Copynumber: 9.8 Consensus size: 29
193272426 AGCTTCGGCT
* * *
193272436 ATCGAATATGAAAAGGGATGGTGAAGACA
1 ATCGAATATGAAAAGGGATGGTTATGACC
* *
193272465 ATC-AACTATGAAAAGGAAT-GTTGCTGACC
1 ATCGAA-TATGAAAAGGGATGGTT-ATGACC
* * *
193272494 ATCGAATATGAAAAGGGATAGTT-TCGGCT
1 ATCGAATATGAAAAGGGATGGTTAT-GACC
* * * **
193272523 ATCGATTATGAAAAGGGATAGTTTCTG-TT
1 ATCGAATATGAAAAGGGAT-GGTTATGACC
* * * * * *
193272552 GTCGATTACGAAAAGGGATAGCTT-TGGCT
1 ATCGAATATGAAAAGGGAT-GGTTATGACC
*
193272581 ATC-AATTATGAAAAGGGATGGTGATGACC
1 ATCGAA-TATGAAAAGGGATGGTTATGACC
* * **
193272610 ATC-AACTATGAAAAAGGATGGTGACAACC
1 ATCGAA-TATGAAAAGGGATGGTTATGACC
* *
193272639 ATC-AACTATGAAAAGGGATGGTGACGACC
1 ATCGAA-TATGAAAAGGGATGGTTATGACC
* *
193272668 ATCGATTAATGAAAAGGGATGGTTTTGACC
1 ATCGAAT-ATGAAAAGGGATGGTTATGACC
193272698 ATCGAATATGAAAAGGGATGGTTA
1 ATCGAATATGAAAAGGGATGGTTA
193272722 CGACTATTGT
Statistics
Matches: 210, Mismatches: 35, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
28 10 0.05
29 165 0.79
30 34 0.16
31 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.25
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATGGTTATGACC
Found at i:193273438 original size:17 final size:17
Alignment explanation
Indices: 193273418--193273461 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 17
193273408 ATGAGTGGTC
193273418 AATAAATATGCGACATT
1 AATAAATATGCGACATT
193273435 AATAAACTTATATGCGACATT
1 AAT-AA---ATATGCGACATT
193273456 AATAAA
1 AATAAA
193273462 CTTACTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
17 4 0.17
18 2 0.09
20 2 0.09
21 15 0.65
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (17 bp):
AATAAATATGCGACATT
Found at i:193273449 original size:21 final size:21
Alignment explanation
Indices: 193273423--193273465 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
193273413 TGGTCAATAA
193273423 ATATGCGACATTAATAAACTT
1 ATATGCGACATTAATAAACTT
193273444 ATATGCGACATTAATAAACTT
1 ATATGCGACATTAATAAACTT
193273465 A
1 A
193273466 CTCATTTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (21 bp):
ATATGCGACATTAATAAACTT
Found at i:193276286 original size:39 final size:40
Alignment explanation
Indices: 193276232--193276450 Score: 349
Period size: 39 Copynumber: 5.6 Consensus size: 40
193276222 AACCCAAGTA
* *
193276232 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
193276271 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
193276311 -CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
193276350 CCTTCGGGACTTAGCCC-GATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
193276389 CCTTCGGGACTTAGCCC-GATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
193276428 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
193276451 CATTCGAATA
Statistics
Matches: 168, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 125 0.74
40 40 0.24
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:193276440 original size:118 final size:118
Alignment explanation
Indices: 193276232--193276450 Score: 361
Period size: 118 Copynumber: 1.9 Consensus size: 118
193276222 AACCCAAGTA
* * * *
193276232 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
193276297 CAATAGCACAAAAGCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
66 CAATAGCACAAAAGCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
193276350 CCTTCGGGACTTAGCCCGATATAGTCAA-TAGCACAAATGCCTTCGGGACTTAGCCC-GATATAG
1 CCTTCGGGACTTAGCCCGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
193276413 TCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
65 TCAATAGCACAAAAG-CTTCGGGACTTAGCCCGGATAT
193276451 CATTCGAATA
Statistics
Matches: 94, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
117 21 0.22
118 70 0.74
119 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (118 bp):
CCTTCGGGACTTAGCCCGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CAATAGCACAAAAGCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:193287140 original size:40 final size:40
Alignment explanation
Indices: 193287081--193287222 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
193287071 AAATTGAATG
* * *
193287081 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
193287121 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
193287161 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
193287201 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
193287223 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:193287223 original size:40 final size:39
Alignment explanation
Indices: 193287120--193287248 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
193287110 TGCTGGAAAT
* * *
193287120 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
193287160 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
193287200 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
193287240 TATATCCGG
1 TATATCCGG
193287249 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:193295167 original size:40 final size:40
Alignment explanation
Indices: 193295101--193295267 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
193295091 AAATTGAATG
* * *
193295101 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
193295140 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
193295180 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
193295220 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
193295260 ATATCCGG
1 ATATCCGG
193295268 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:193297935 original size:20 final size:20
Alignment explanation
Indices: 193297912--193297949 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
193297902 CACATCCAAA
*
193297912 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
193297932 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
193297950 GCGAATTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:193304269 original size:28 final size:28
Alignment explanation
Indices: 193304223--193304291 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
193304213 TTTAAAACCC
*
193304223 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
193304250 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
193304278 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
193304292 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:193307653 original size:26 final size:26
Alignment explanation
Indices: 193307624--193307674 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
193307614 AAATTAATGC
193307624 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
193307650 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
193307675 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:193309772 original size:26 final size:26
Alignment explanation
Indices: 193309743--193309793 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
193309733 AAATTAATGC
193309743 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
193309769 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
193309794 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:193311890 original size:26 final size:26
Alignment explanation
Indices: 193311861--193311911 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
193311851 AAATTAATGC
193311861 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
193311887 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
193311912 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:193314009 original size:26 final size:26
Alignment explanation
Indices: 193313980--193314030 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
193313970 AAATTAATGC
193313980 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
193314006 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
193314031 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:193315886 original size:14 final size:15
Alignment explanation
Indices: 193315865--193315901 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
193315855 GTGTACTATA
193315865 TCCCATATTGCTTTT
1 TCCCATATTGCTTTT
*
193315880 T-CCATA-TGTTTTT
1 TCCCATATTGCTTTT
193315893 TCCCATATT
1 TCCCATATT
193315902 ACCTTCTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
13 7 0.37
14 10 0.53
15 2 0.11
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.54
Consensus pattern (15 bp):
TCCCATATTGCTTTT
Found at i:193316126 original size:26 final size:26
Alignment explanation
Indices: 193316097--193316147 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
193316087 AAATTAATGC
193316097 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
193316123 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
193316148 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:193318246 original size:26 final size:26
Alignment explanation
Indices: 193318217--193318267 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
193318207 AAATTAATGC
193318217 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
193318243 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
193318268 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:193337146 original size:24 final size:24
Alignment explanation
Indices: 193337114--193337159 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
193337104 GTTAGGTTCT
* *
193337114 CGGTGGTGCTCTGGCGATCCATTC
1 CGGTGGTGCTCCGGCGAGCCATTC
193337138 CGGTGGTGCTCCGGCGAGCCAT
1 CGGTGGTGCTCCGGCGAGCCAT
193337160 CCCAGAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.09, C:0.30, G:0.37, T:0.24
Consensus pattern (24 bp):
CGGTGGTGCTCCGGCGAGCCATTC
Found at i:193337224 original size:25 final size:25
Alignment explanation
Indices: 193337188--193337235 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
193337178 ATGCTATAAG
193337188 TCATCCCAGTCCCTCCCCTTTTGAA
1 TCATCCCAGTCCCTCCCCTTTTGAA
*
193337213 TCATCCCGGTCCCTCCCCTTTTG
1 TCATCCCAGTCCCTCCCCTTTTG
193337236 GAACAAGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.10, C:0.46, G:0.10, T:0.33
Consensus pattern (25 bp):
TCATCCCAGTCCCTCCCCTTTTGAA
Found at i:193337397 original size:43 final size:43
Alignment explanation
Indices: 193337338--193338178 Score: 806
Period size: 43 Copynumber: 19.8 Consensus size: 43
193337328 TACATTGCTG
* * * * *
193337338 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
* * * *
193337381 GTCGGTCGTGCGGGAGCCTCAGACACCATCAGC-ACCTA-GCC
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
* ** * * **
193337422 TCTTGGTCGTGCGGGATCCTCGGGTACCATCGAC-ACCTCGGTG
1 -CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
* *
193337465 CTTGGAT-GTGCGGGAGCCTTGGTCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
* * * * *
193337508 CCTGGTCGTGCGGGAGTCTCAGG-CACCATTGGTAACTTAGGCC
1 CTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCC
* * * * *
193337551 CCTGGTCGTGCGAGAGCCTCGG-TACCATCGACAACCTAAGCC
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
* *
193337593 CTTGGTCGTGCGGAAGCCTCGGGCACCATCGGC-ACCTTA-GCC
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC-TAGGCC
* * * * * *
193337635 CTTAGTCGTGCGGGAGCCTCAGG-TACCGTCGACAACTTAAGCC
1 CTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCC
* * *
193337678 CTTGGTTGTGCGGGAGCCTCGGCCACCATCGAC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
* *
193337720 CTTGATCGTGAGGGAGCCTCGGACACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
* * *
193337763 CTTGGTCGTTCGGGAGCTTC-GAGCACCATTGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCC
* * * **
193337806 CCTGGTCGTGCAGGAGCCTTGGGA-ACCATCGATAACCTAGGCC
1 CTTGGTCGTGCGGGAGCC-TCGGACACCATCGGCAACCTAGGCC
** *
193337849 CTTGGTCGTGCTAGAGCCTCGG-TACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
** * *
193337891 CTTGGTCGTTTGGGAGCCTCGGGCACCATTGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
* *
193337933 CTTGGTCGTGCAGGAGCCTCGGACATCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
* *
193337976 CTTGGTCGTGCGGGAGCTTCAGG-CACTATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCC
*
193338019 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTAGTG--
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC-TAG-GCC
* ***
193338061 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCAATAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
* * *
193338104 CTTGGTCGTGCGAGAGTCTCGG-GACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
* *
193338145 CTTGGTCATGCGGGAGCCTCGGCCACCATCGGCA
1 CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
193338179 CCTTTTTTTT
Statistics
Matches: 654, Mismatches: 114, Indels: 60
0.79 0.14 0.07
Matches are distributed among these distances:
41 31 0.05
42 294 0.45
43 321 0.49
44 6 0.01
45 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (43 bp):
CTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCC
Found at i:193337503 original size:85 final size:85
Alignment explanation
Indices: 193337338--193338178 Score: 849
Period size: 85 Copynumber: 9.9 Consensus size: 85
193337328 TACATTGCTG
* * * * * * * * *
193337338 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTCGGTCGTGCGGGAGCCTCAG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
193337403 ACACCATCAGC-ACCTA-GCC
65 GCACCATCGGCAACCTAGGCC
* * * * ** *
193337422 TCTTGGTCGTGCGGGATCCTCGGGTACCATCGACACCTCGGTGCTTGGAT-GTGCGGGAGCCTTG
1 -CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
*
193337486 GTCACCATCGGCAACCTAGGCC
64 GGCACCATCGGCAACCTAGGCC
* * * * * * * *
193337508 CCTGGTCGTGCGGGAGTCTCAGGCACCATTGGTAACTTAGGCCCCTGGTCGTGCGAGAGCCTC-G
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
193337572 GTACCATCGACAACCTAAGCC
65 GCACCATCGGCAACCTAGGCC
* * *
193337593 CTTGGTCGTGCGGAAGCCTCGGGCACCATCGGCACCTTA-GCCCTTAGTCGTGCGGGAGCCTCAG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC-TAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * * *
193337657 GTACCGTCGACAACTTAAGCC
65 GCACCATCGGCAACCTAGGCC
* * * * * *
193337678 CTTGGTTGTGCGGGAGCCTCGGCCACCATCGACACCTAGGCCCTTGATCGTGAGGGAGCCTCGGA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
193337743 CACCATCGGCAACCTAGGCC
66 CACCATCGGCAACCTAGGCC
* * * * * * *
193337763 CTTGGTCGTTCGGGAGCTTCGAGCACCATTGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTTGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* **
193337828 GAACCATCGATAACCTAGGCC
65 GCACCATCGGCAACCTAGGCC
** * **
193337849 CTTGGTCGTGCTAGAGCCTC-GGTACCATCGGCAACCTAGGCCCTTGGTCGTTTGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
193337913 GCACCATTGGC-ACCTAGGCC
65 GCACCATCGGCAACCTAGGCC
* * * * *
193337933 CTTGGTCGTGCAGGAGCCTCGGACATCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCTTCAG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
193337998 GCACTATCGGCAACCTAGGCC
65 GCACCATCGGCAACCTAGGCC
193338019 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTAGTG--CTTGGAT-GTGCGGGAGCCTC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTC
***
193338081 GGGCACCATCAATAACCTAGGCC
63 GGGCACCATCGGCAACCTAGGCC
* * * *
193338104 CTTGGTCGTGCGAGAGTCTCGGG-ACCATCGGCACCTAGGCCCTTGGTCATGCGGGAGCCTCGGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
193338168 CACCATCGGCA
66 CACCATCGGCA
193338179 CCTTTTTTTT
Statistics
Matches: 618, Mismatches: 121, Indels: 35
0.80 0.16 0.05
Matches are distributed among these distances:
82 1 0.00
83 4 0.01
84 121 0.20
85 366 0.59
86 125 0.20
87 1 0.00
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (85 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGCAACCTAGGCC
Found at i:193339044 original size:2 final size:2
Alignment explanation
Indices: 193339037--193339070 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
193339027 AGCATAGTTG
*
193339037 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
193339071 TCGACCATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:193339737 original size:29 final size:28
Alignment explanation
Indices: 193339704--193339855 Score: 114
Period size: 29 Copynumber: 5.5 Consensus size: 28
193339694 GACGAGAATG
*
193339704 GCACTAAGTGTGCAAGCTGGAAATATATG
1 GCACTAAGTGTGCAAGCT-GAAATATATA
* * *
193339733 GCACTAAGTGTGCGAGGTCAAATTATATA
1 GCACTAAGTGTGCAAGCTGAAA-TATATA
* * * *
193339762 GCACTATGTGTGCTAGCTG-ATTTTATA
1 GCACTAAGTGTGCAAGCTGAAATATATA
** *
193339789 GCACTAAGTGTGCGAATTTG-ATTATATA
1 GCACTAAGTGTGC-AAGCTGAAATATATA
* * * *
193339817 GCACTATGTGTGCGAGCTG-ATTTTATA
1 GCACTAAGTGTGCAAGCTGAAATATATA
193339844 GCAC-AAGTGTGC
1 GCACTAAGTGTGC
193339856 GGATTCACTA
Statistics
Matches: 100, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
26 7 0.07
27 31 0.31
28 26 0.26
29 36 0.36
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGCTGAAATATATA
Found at i:193339788 original size:27 final size:27
Alignment explanation
Indices: 193339704--193339855 Score: 126
Period size: 27 Copynumber: 5.5 Consensus size: 27
193339694 GACGAGAATG
* * *
193339704 GCACTAAGTGTGCAAGCTGGAAATATATG
1 GCACTAAGTGTGCAAGCT-G-ATTTTATA
* ** *
193339733 GCACTAAGTGTGCGAGGTCAAATTATATA
1 GCACTAAGTGTGC-AAG-CTGATTTTATA
* *
193339762 GCACTATGTGTGCTAGCTGATTTTATA
1 GCACTAAGTGTGCAAGCTGATTTTATA
** *
193339789 GCACTAAGTGTGCGAATTTGATTATATA
1 GCACTAAGTGTGC-AAGCTGATTTTATA
* *
193339817 GCACTATGTGTGCGAGCTGATTTTATA
1 GCACTAAGTGTGCAAGCTGATTTTATA
193339844 GCAC-AAGTGTGC
1 GCACTAAGTGTGC
193339856 GGATTCACTA
Statistics
Matches: 98, Mismatches: 22, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
26 7 0.07
27 34 0.35
28 23 0.23
29 31 0.32
30 2 0.02
31 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCAAGCTGATTTTATA
Found at i:193343288 original size:24 final size:24
Alignment explanation
Indices: 193343242--193343288 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
193343232 GGTTAGGTTC
* *
193343242 CCGGCAGTGCTCCTACGATCCATT
1 CCGGCAGTGCTCCGACGAGCCATT
* *
193343266 CCGGCGGTGCTCCGGCGAGCCAT
1 CCGGCAGTGCTCCGACGAGCCAT
193343289 CACAGTGGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.13, C:0.38, G:0.30, T:0.19
Consensus pattern (24 bp):
CCGGCAGTGCTCCGACGAGCCATT
Found at i:193343624 original size:85 final size:85
Alignment explanation
Indices: 193343515--193354309 Score: 7264
Period size: 85 Copynumber: 128.9 Consensus size: 85
193343505 GCCTTAGACG
* * * * **
193343515 CCATCAGCAACCTAGGACGTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
** * **
193343580 AT-GTATGGGAGTCTCGTTCA
66 -TCGTGCGGGAGCCTCGGGCA
* ** ** *
193343600 CCATCGGCAACCTAGGCCCCTGGTCGTGCGAAAGCCTC-GATACCATCGGTAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTG
*
193343664 GTCGTGCGGGAGCCTCAGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * ** *
193343685 CCATTGGC-ACCTAGGACCTTGGTCTTGCGCGAGCCTCGGGCACCATCGGTGCCTTGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
193343749 TCGTGCGGGAGCCTCGGGCA
66 TCGTGCGGGAGCCTCGGGCA
* * * * ** **
193343769 CCATCGAC-GCTTTGGTGCTTGGAT-GTGTAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* *
193343832 GGTCTTACGGGAGCCTCGGGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * *
193343854 CCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGAGCACCATCGGTAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTG
* **
193343919 TTCGTGCGGGAGCCTCGACCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * *
193343940 CCATCGG-TACCTAGGCCCTTAGTCGTGAGGGAACCTCGGACACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * **
193344004 GTCGTACTGGAGATTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * *
193344025 CCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGAACCATCGGTAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTG
* * * *
193344090 GTCATGCGAGAGCCT-TGGTA
65 GTCGTGCGGGAGCCTCGGGCA
* *
193344110 CCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193344175 TTGTGCGGGAGCCTCGGACA
66 TCGTGCGGGAGCCTCGGGCA
* * * *
193344195 CCATCGGCAACCTAGGCCCTTGGTCTTACGGGAGCCTCGGGCACCATCGACAACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
193344260 GTCGTGCGAGAGCCTCGAGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * *
193344281 CCATCGGTAACCTAGGCCCTTGTTTGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
** *
193344346 GTCGTATGGGAGCCTCGGCCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * * *
193344367 CCATCTGCAACTTAAGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
193344432 GTCGTGCGAGAGCTTCGGG-A
65 GTCGTGCGGGAGCCTCGGGCA
* ** * * * ***
193344452 CTATCGGC-ACCTAGGCCCTCAGTCGTGCGGGATCCTCGGCCACCATCGGCACCTTGGTGATTCG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTT-G
* *
193344516 AT-GTGCGGGAGCCTCGGACA
65 GTCGTGCGGGAGCCTCGGGCA
* * * *
193344536 CTATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGTACCATCGGTAACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTG
*
193344601 GTCGTGCGGGAGCCTCGGGTA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * * * * **
193344622 CCATCGGTAACCT-GGGCCTTGATCGTGCGAGAACCTC--G-AGCA----CACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193344679 AT-GTGCGGGAGCCTTGGACA
66 -TCGTGCGGGAGCCTCGGGCA
* * * * * *
193344699 CCATCGGCCAA-CTAGTCCCTTGGTCGTGCAGAAGCCTCGGGCACCATCGACACCTTGGTACCTT
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTT
** *
193344763 GGAAGTGCGGGAGCCTCGGTCA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * *** *
193344785 CCACCGACAACCTAGGCCCTTGGTTGTGTGGTTTCCTCGGGCACCATCGGCAACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
193344850 GTCGTGCGAGAGCCTC-GGTA
65 GTCGTGCGGGAGCCTCGGGCA
** *
193344870 CCATCGGCAACCTAGGCCCTTGGTCGTATGGGAGCCTCGAGCACCATCGGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193344935 TTGTGCGGGAGCCTCGAG-A
66 TCGTGCGGGAGCCTCGGGCA
* * * * * * *
193344954 CTATCGGC-ACGTAGGCCTTTGGTCGAGCGAGAGCCTCGGG-ACTATCAGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
193345017 TCGTGCGGGAGCCTCGGCCA
66 TCGTGCGGGAGCCTCGGGCA
* ** * *
193345037 CCATCGGC-ACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* * *
193345100 GGTCGTGCGGGAACTTCGTGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * *
193345122 CCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTACCATTGGCAACCTAGG-CCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * *
193345186 ATCGTGCGAGAACCTCGGG--
65 GTCGTGCGGGAGCCTCGGGCA
* ** * *
193345205 -CA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* * *
193345263 AGTAGTGCGGGAGTCTCGGGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * *
193345285 CCATCGGC-ACCTTGGTGCCTTGGAT-GTACGGGAGCCTCGGTCACCATCGGTAACCTAGGCCCT
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCT
* * *
193345348 TCGTTGTGTGGGAGCCTCGGGCA
63 TGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193345371 CCATCGGGAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTACCATCGGTAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTG
*
193345435 GTCGTGCGAGAGCCTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * * * * *
193345456 CCATCGGC-ACCTAGGCCTTTGGTCATGCGGGAGCCGCGGG-TCTACCGGCACCTAGGTCTTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193345519 TCGTGCGAGAGCCTCCGG-A
66 TCGTGCGGGAGCCTCGGGCA
* * * * * **
193345538 CTATCGGC-ACTTAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGGCACCTTGGAGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
193345602 AT-GTGCGGGAGCCTCGGACA
66 -TCGTGCGGGAGCCTCGGGCA
* * * ** * *
193345622 CCTTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGAACCATCAGTAAGCTAGACCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTG
* * *
193345687 GTCATGCGAGAGCCTC-GGTA
65 GTCGTGCGGGAGCCTCGGGCA
* * *
193345707 CCATCGGCAACCTAGGCCCTT-G--GT---------TCGGGCACCATCGGTACCTAAGCCCCTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* ** *
193345760 TCGTGCGGAAGCCTCGAACG
66 TCGTGCGGGAGCCTCGGGCA
* *
193345780 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
193345845 GTTGTGCGGGAGCCTCGGGTA
65 GTCGTGCGGGAGCCTCGGGCA
* ** * * * **
193345866 CCATCGGCAACCTAGG-CCTTGATCGTGCGAAAACCTC--G-AGCA----CACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
**
193345923 AT-GTGCGGGAGCCTC-GAAA
66 -TCGTGCGGGAGCCTCGGGCA
* * * * * *
193345942 CCATCGGTCAA-CTGGGCCCTTGGTCCTGCGGGAGCCACGGGCACCATCGACACCTTGGTACCTT
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTT
* *
193346006 GGAT-GTGTGGGAGCCTCGGTCA
64 GG-TCGTGCGGGAGCCTCGGGCA
* * * * * * *
193346028 GCATCGACAACCTAGGCCCTTGGTTGTGTGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCCTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
** *
193346093 GTCGTGCTAGAGCCTC-GGTA
65 GTCGTGCGGGAGCCTCGGGCA
* * * *
193346113 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGACCCTCGGGCATCATTGGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
193346178 TCGTGCGGGAGCCTCGAG-A
66 TCGTGCGGGAGCCTCGGGCA
* * * * ** *
193346197 CTATCGGC-ACCTAGACCCTTGTTCGTGCGAGAGCCTCGGGCACCATCTGTAACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTG
*
193346261 GTCGTGCGAGAGCCTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * *
193346282 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGG-ACTATCGGCACCTAGGCCCTCGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193346346 TCGTGCGGGATCCTCGGCCA
66 TCGTGCGGGAGCCTCGGGCA
* * * *** *** * *
193346366 CTATC-GCCACCTTGGTGATTGGAT-GTGCGGGAGCCTCATACACCATCGGTAACCTAGGCCTTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTT
193346429 GGTCGTGCGGGAGCCTCGGGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * *
193346451 CCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTACCATCGGTAACCTAGG-CCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTG
* * *
193346515 ATCGTGCGAGAACCTC--G-A
65 GTCGTGCGGGAGCCTCGGGCA
* * ** * *
193346533 GCA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCCAACTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTT
*
193346592 GGTCGTGCAGGAGCCTCGGGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * * * *
193346614 CCATCGAC-ACCTTGGTACCTTGGTTGTGCGGGAGCCTCGGTCACCACCGACAACCTAGGCCCTT
1 CCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* * **
193346678 GGTTGTGTGGGTTCCTCGGGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* * *
193346700 CCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
193346764 GTCGTACGGGAGCCTCGAGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * *
193346785 CCATCGGC-ACCTAGTCACTTGGTCGTGCGAGAGCCTCGGG-ACTATCAGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193346848 TTGTGCGGGAGCCTCGGCCA
66 TCGTGCGGGAGCCTCGGGCA
* * * * * *
193346868 CCATCGGC-ACCTTGGCGCTTGGAT-GTGCGGGAGCTTCGGACACCATCGGTAACCTAGGCCCTC
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTT
* * *
193346931 GGTCGTGCGGGAACTTCGTGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* *
193346953 CCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGGTACCATTGGCAACCTAGG-CCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * * *
193347016 ATCATGCGTGAACCTCGGG--
65 GTCGTGCGGGAGCCTCGGGCA
* ** * *
193347035 -CA----C-ACCTTGGTGCTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* * *
193347093 GGTAGTGCGGGAGTCTCGAGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193347115 CCATCAGC-ACCTTGGTGCCTTGGAT-GTACGGGAGCCTCGGTCACCATCGGCAACCAAGGCCCT
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCT
* * *
193347178 TCGTTGTGCGGGAGCCTCGGGCT
63 TGGTCGTGCGGGAGCCTCGGGCA
* * * * * * *
193347201 CCTTCGGGAACCTA-GCCCCTGGTCATGCGAGAGCCTC-GGTACCATCGGTAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTG
* *
193347264 GTCGTTC-GGAGCCTCGTGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * * * *
193347284 CCATCGGC-ACTTAGGCCCTTGGTCATGCGGGAGCCGCGGG-TCTATCGGCACCTAGGTCTTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193347347 TGGTGCGAGAGCCTCGGG-A
66 TCGTGCGGGAGCCTCGGGCA
* * * * * **
193347366 CTATCGGC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGGTACCTTGGAGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
193347430 AT-GTGCGGGAGCCTCGGACA
66 -TCGTGCGGGAGCCTCGGGCA
* * * * * ** *
193347450 CCTTCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGAACTATCAGTAAGCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTG
* *
193347515 GTCGTGCGAGAGCCTC-GGTA
65 GTCGTGCGGGAGCCTCGGGCA
* * *
193347535 CCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGTACCTAGGCCCCTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* ** *
193347600 TCGTGCGGAAGCCTCGAACG
66 TCGTGCGGGAGCCTCGGGCA
* *
193347620 CCATCGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
*
193347685 GTCGTGCGGGAGCCTCGGGTA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * **
193347706 CCATCGGCAACCTAGG-CCTTGATCGTGCGGGAACCTC--G-AGCA----CACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
193347763 AT-GTGCGGGAGCCTCGGACA
66 -TCGTGCGGGAGCCTCGGGCA
* * * * * *
193347783 CCATTGGCCAA-CTAGGCCCTTGGTCCTGC-GGAGCCTCGGGCACCATCGACACTTTGGTACCTT
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTT
* *
193347846 GGAT-GTGTGGGAGCCTCGGTCA
64 GG-TCGTGCGGGAGCCTCGGGCA
* * * * ** * * * *
193347868 GCACCGACAACCTAGACCCTTGGTTATGTGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCCTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * *
193347933 GTCATGCGAGAGCCTC-GGTA
65 GTCGTGCGGGAGCCTCGGGCA
* * * *
193347953 CCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
*
193348017 GTCGTGCGGGAGCCTCGGGAA
65 GTCGTGCGGGAGCCTCGGGCA
* * ** * * * *
193348038 TCATCGGC-ACCTAGG-CCTTGGTCGTGCGAGAGTTTCGGG-ACTATAGGCAGCTAGGCCCTTAG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
193348100 TCGTGCGAGG-GCCTCGGG-A
66 TCGTGCG-GGAGCCTCGGGCA
* * * * * *
193348119 CTATCAGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAG-ACTATCAGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * * *
193348182 TCG-GCACCTTGGTGCTTGGATGTGCGGGA
66 TCGTG---C-GGGAGCCTCG--G-GC---A
* * * * * * * * **
193348211 GCC-TCGG-ACACCATCGGCAACCTAGGCCCT--TGG-TCGTGCGAAAGC-CTCGGGCACCATCG
1 -CCATCGGCA-ACC-TAGGC--CCTTGGTCGTGCGGGAGCCT-CG--GGCAC-CAT-------CG
* *
193348270 GCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTA
50 GC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * * **
193348307 CCATTGGCAACCTAGG-CCTCGATCGTGCGAGAACCTCGGG---CA----CACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193348364 AT-GTGCGGGAGGCTCGGACA
66 -TCGTGCGGGAGCCTCGGGCA
* * * * * *
193348384 CTATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGCACCATCTGCACCTTGGTGCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTG
* * *
193348449 GAT-GTACGGGCGCCTC-GCCA
65 G-TCGTGCGGGAGCCTCGGGCA
* * * * * *
193348469 CCATCGGTAACCTAGGCCCTTCGTTGTGCGGGAGCCTC-GGCACCATCGGGAACCTAGGCCCCTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTG
* * *
193348533 GTCGTGCGAGAGCCAC-GGTA
65 GTCGTGCGGGAGCCTCGGGCA
*
193348553 -CATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * *
193348617 TCCTGCGGGAGCCGCGGG-T
66 TCGTGCGGGAGCCTCGGGCA
* * * * * * * *
193348636 CTATCGAC-ACCAAGGTCTTTGGTCGTGCGAGAGCCTCGGG-ACTATCGGCACCTCGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193348699 TCGTACGGGAGCCTCGGCCA
66 TCGTGCGGGAGCCTCGGGCA
* ** * * * * *
193348719 CCATCGGC-ACCTTGGAGCTTGGAT-GTGCTGGAGCCCCGGACACCTTCGGCAACCTAGGCCCTC
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* *
193348782 GGTCGTGCGGGAGCCTCGAGAA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * * * *
193348804 CCATCAGTAAGCTAGGCCCTTGGTCGTGCGAGAGCC-CCGGTACCATCGGCAACCTAGGCCCTTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
193348868 GTCGTGCGGGAGCCTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * ** *
193348889 CCATCGG-TACCTAGGCCCTTGGTCGTGCGGAAGCCTTGAACGCCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
*
193348953 GTCGTGAGGGAGCCTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * * *
193348974 TCATCGACAACCTAGGCCC-TGGTCGTGCGAGAACCTCGGGTACCATCGGCAACCTTGG-CCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
193349037 ATCGTGCGGGAACCTC--G-A
65 GTCGTGCGGGAGCCTCGGGCA
* * ** * *
193349055 GCA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCCAACTAGGCCC-T
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTT
*
193349113 GGTCGTGCGGGAGCCTCGGGTA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * * * **
193349135 CCATTGGCAACCTAGG-CCTCGATCGTGCGAGAACCTCGGG---CA----CACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193349192 AT-GTGCGGGAGGCTCGGACA
66 -TCGTGCGGGAGCCTCGGGCA
* * * * *
193349212 CTATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGCACCATCGGCACCTTGGTGCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTG
* * **
193349277 GAT-GTACGGGCGCCTCGACCA
65 G-TCGTGCGGGAGCCTCGGGCA
* * * * * *
193349298 CCATCGGTAACCTAGGCCCTTCGTTGTGCGGGAGCCTCGGGCACCATCGGGAACCTAGGCCCCTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTG
* * *
193349363 GTCGTGCGAGAGCCAC-GGTA
65 GTCGTGCGGGAGCCTCGGGCA
*
193349383 CCATC-GTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * * *
193349446 TCCTGCGTGAGCCGCGGG-T
66 TCGTGCGGGAGCCTCGGGCA
* ** * * * * * *
193349465 CTATCAAC-ACCAAGGTCTTTGGTCGTGCGAGAGCCTCGGG-ACTATCGGCACCTCGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * *
193349528 TTGTACGGGAGCCTCGGCCA
66 TCGTGCGGGAGCCTCGGGCA
* ** * * * *
193349548 CCATCGGC-ACCTTGGAGCTTGGAT-GTGCTGGAGCCCCGGACACCTTCGGCAACCTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* *
193349611 GGTCGTGC-GGAGCCTCGAGAA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * * * * *
193349632 CCATCAGTAAGCTAGGCCCTTGGTCATGCGAGAGCC-CCGGTACCATCGGCAACCTAGGCCCTTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
193349696 GTCGTGCGGGAGCCTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * ** *
193349717 CCATCGG-TACCTAGGCCCTTGGTCGTGCGGAAGCCTCGAACGCCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
*
193349781 GTCGTGAGGGAGCCTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * * *
193349802 TCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAACCTCGGGTACCATCGGCAACCTTGG-CCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * *
193349866 ATCGTGCGGGAACCTCGAGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * *
193349887 -CACTTGG-----T--G--CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCCAACTAGGCCCT
1 CCA-TCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCT
*
193349941 TGGTCGTGCAGGAGCCTCGGGCA
63 TGGTCGTGCGGGAGCCTCGGGCA
* * * * * * * *
193349964 CCATCGAC-ACCTTGGTACCTTGGAT-GTGCGGGAGCCTCGGTCAACACCGACAACTAGGCCCTT
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTT
* * **
193350027 GGTTGTGTGGGTTCCTCGGGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * *
193350049 CCATCGGCAACCTAAGGCCC-TGGTCGTGCGAGAGCCTC-GGTACCATTGGCAACCTAGGCCCCT
1 CCATCGGCAACCT-AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
** *
193350112 GGTCGTGCAAGAGCCTC-GGTA
64 GGTCGTGCGGGAGCCTCGGGCA
** * * * *
193350133 CCATTAGCAACCTACGCCCTTGGTCGTACGGGTGCCTCGAGCACCATCGGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193350198 TTGTGCGGGAGCCTCGAG-A
66 TCGTGCGGGAGCCTCGGGCA
* * * **
193350217 CTATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACTATCAACACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193350280 TCGTACGGGAGCCTCGGCCA
66 TCGTGCGGGAGCCTCGGGCA
* ** * * * *
193350300 CCATC-GC-ACCTTGGTGCTTGAAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAAGCCCTC
1 CCATCGGCAACCTAGGCCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* * *
193350362 GATCGTGCGGGAACCTCGTGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * *
193350384 CCATCAGCAACCTAGGCCC-TAGTCGTGCGGGAGCCTCGGGTACCATTGGCAACCTAGG-CCGTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * *
193350447 ATCGTGCGTGAACCTCGGG--
65 GTCGTGCGGGAGCCTCGGGCA
* ** * * * *
193350466 -CA----C-ACCTTGGTGCTTAGAT-GTGCGGGTGCCTCGGACACCATCGGCAACCTGGGCCCTT
1 CCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* *
193350524 GGTAGTGCGGGAGTCTCGGGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* ** * * *
193350546 CCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAGCCTC-GGTACCATCGGTAACCTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTT
* *
193350608 GGTCGTTCGGGAGCCTCGTGCA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193350630 CCATCGGC-ACCTAGGCCCTTGGTCATGCGGGAGCCGCGGG-TCTATCGGCACCTAGGTCTTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193350693 TGGTGCGAGAGCCTCGGG-A
66 TCGTGCGGGAGCCTCGGGCA
* * * * * **
193350712 CTATCGGC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGGTACCTTGGAGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
193350776 AT-GTGCGGGAGCCTCGGACA
66 -TCGTGCGGGAGCCTCGGGCA
* ** * ** *
193350796 CCTTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGAAACTATCAGTAAGCTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GGCACCATC-GGCACCTAGGCCCTT
* *
193350861 GGTCGTGCGAGAGCCTC-GGTA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * *
193350882 CCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACTATCGGTACCTAGGCCCCTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* ** *
193350947 TCGTGCGGAAGCCTCGAACG
66 TCGTGCGGGAGCCTCGGGCA
* * *
193350967 CCATTGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
*
193351032 GTCGTGCGGGAGCCTC-GGTA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * * **
193351052 CCATCGGTAACCTAGG-CCTTGATCGTGCGGGAACCTC--G-AGCA----CACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
193351109 AT-GTGCGGGAGCCTCGGACA
66 -TCGTGCGGGAGCCTCGGGCA
* * * * * *
193351129 CCATTGGCCAA-CTAGGCCCTTGGTCCTGCGGGAGCCTCGGGCACCATCGACACTTTGGTACCTT
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTT
* *
193351193 GGAT-GTGTGGGAGCCTCGGTCA
64 GG-TCGTGCGGGAGCCTCGGGCA
* * * * ** * * *
193351215 GCACCGACAACCTAGACCCTTGGTTATGTGGGAGCCTCGGGCACCATCAGCAACCTAGGCCC-TA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
193351279 GTCGTGCGAGAGCCTC-GGTA
65 GTCGTGCGGGAGCCTCGGGCA
* * * *
193351299 CCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
*
193351363 GTCGTGCGGGAGCCTCGGGAA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * * * *
193351384 TCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGTCTCGGG-ACTATAGGCAGCTAGGCCCTTAG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
193351447 TCGTGCGAGG-GCCTCGGG-A
66 TCGTGCG-GGAGCCTCGGGCA
* * * * * * *
193351466 CTATCAGC-ACCTAGGCCCTTGGTCGTGCGAGAGCTTCGAG-ACTATCAGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * * *
193351529 TCG-GCACCTTGGTGCTTGGATGTGCGGGA
66 TCGTG---C-GGGAGCCTCG--G-GC---A
* * * * * * **
193351558 GCC-TCGG-ACACCATCGGCAACCTAGG-C-T-CTTGG-TCGTGCGAAAGC-CTCGGGCACCATC
1 -CCATCGGCA-ACC-TAGGC--CCTTGGTCGTGC-GGGAGCCT-CG--GGCAC-CAT-------C
* *
193351616 GGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTA
49 GGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * * **
193351654 CCATTGGCAACCTAGG-CCTCGATCGTGCGAGAACCTCGGG---CA----CACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193351711 AT-GTGCGGGAGGCTCGGACA
66 -TCGTGCGGGAGCCTCGGGCA
* * * * *
193351731 CTATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGCACCATCGGCACCTTGGTGCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTG
* * *
193351796 GAT-GTAC-GGCGCCTCGAGCA
65 G-TCGTGCGGGAGCCTCGGGCA
* * *
193351816 CCATCGG-AACCTA-------GGTCGTGCGAGAGCCTC-GGTACCATCGGTAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTG
193351872 GTCGTGCGGGAGCCTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * * * * *
193351893 CCATCGGC-ACCTAGGCCCTTGGTCCTGCGGGAGCCGCGGG-TCTATCGACACCAAGGTCTTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
193351956 TCGTGCGAGAGCCTC-GG-A
66 TCGTGCGGGAGCCTCGGGCA
* * * * * **
193351974 CTATCGGC-ACCTCGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGGCACCTTGGAGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * *
193352038 AT-GTGCTGGAGCCCCGGACA
66 -TCGTGCGGGAGCCTCGGGCA
* * * ** *
193352058 CCTTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGAACCATCAGTAAGCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTG
* * * * *
193352123 GTCATGTGAGAGCC-C-CGTA
65 GTCGTGCGGGAGCCTCGGGCA
* *
193352142 CCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTA-GCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* ** *
193352206 TCGTGCGGAAGCCTCGAACG
66 TCGTGCGGGAGCCTCGGGCA
* * *
193352226 CCATC-GCAACCTAGGCCCTTGGTCGTG-AGGAGCCTCGGGCATCATCGGCAACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * * *
193352289 GTCGGGCGAGAACCTC-GGTA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * * **
193352309 CCATCGGCAACCTTGG-CCTTGATCGTGCGGGAACCTC--G----AGC-GCACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
193352366 AT-GTGCGGGAGCCTCGGACA
66 -TCGTGCGGGAGCCTCGGGCA
* * *
193352386 CCATCGGCCAA-CTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGACACCTTGGTACCCT
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG--CCCT
*
193352450 TGGAT-GTGCGGGAGCCTCGGTCA
63 TGG-TCGTGCGGGAGCCTCGGGCA
* * * * ** *
193352473 CCACCGACAACCTAGG-CCTTGGT-TTGTGGGTTCCTCGGGTACCATCGGCAACCTAAGGCCC-T
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCT-AGGCCCTT
* *
193352535 GGTCGTGCGAGAGCCTC-GGTA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * ** *
193352556 CCATCGGCAACCTAGGCCCCTGGTCGTGC-AGAGCCTC-GGTACCATTAGCAACCTACGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * *
193352619 GTCGTAC-GGTGCCTCGAGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * *
193352639 CCATCGGC-ACCTAGGCCCTTGGTTGTGCGGGAGCCTCGAG-ACTATCGGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
193352702 TCGTGCGAGAGCCTCGGG-A
66 TCGTGCGGGAGCCTCGGGCA
** ** * * **
193352721 GTATCAAC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCCACCATCGGCACCTTGGTGCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-CACCATCGGCACCTAGGCCCTTG
* * *
193352785 AAT-GTGCAGGAGCCTCGGACA
65 -GTCGTGCGGGAGCCTCGGGCA
* * * * * *
193352806 CCATC-GCAACCTAGGCCCTCGATCGTGTGGGAACCTCGTGCACCAATCAGCAACCTAGGCCC-T
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC-ATCGGC-ACCTAGGCCCTT
* * *
193352869 AGTCGTGTGGGAGCCTC-GGTA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * * * **
193352890 CCATTGGCAACCTAGG-CCGTGATCGTGCGAGAACCTCGGG---CA----CACCTTGGTGCTTAG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTT-G
* * *
193352947 AT-GTGC-GGTGCCTCGGACA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * **
193352966 CCATCGGCAACCTGGGCCCTTGGTAGTGCGGGAGTCTCGGGCACCATCGGCACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
193353031 AT-GTGCGAGAGCCTC-GGTA
66 -TCGTGCGGGAGCCTCGGGCA
* * *
193353050 CCATCGGTAACCTAGGCCCTTGGTCGTTC-GGAGCCTCGTGCACCATCGGCACCTAGG-CCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * *
193353113 TCATGCGGGAGCCGCGGG-T
66 TCGTGCGGGAGCCTCGGGCA
* * *
193353132 CTATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAATCATCGGCACCTAGGCCC-TGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * *
193353195 TCGAGCGAGAGTCTCGGG-A
66 TCGTGCGGGAGCCTCGGGCA
* * * * * *
193353214 CTATAGGC-AGCTAGG-CCTTGGTCGTGCGAGG-GCCTCGGG-ACTATCAGCACCTAGACCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* *
193353275 GTCGTGCGAGTGCCTCGGG-A
65 GTCGTGCGGGAGCCTCGGGCA
* * * *** * *
193353295 CTATCAGC-ACCTAGGCCCTTGGTCG-GC---A-CCTTGGTGCTTGGATGTGCGGGAGCCTCGGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-GC-ACCA--T-CGGCA-CCTAGG-
* *** * *
193353354 CACCATCGG-CAACCTAGGA-CCT-TGG--
59 C-CC-TTGGTCGTGC-GGGAGCCTCGGGCA
* * * * * *
193353379 TCATGCGG-AAGCCTCGGGCACC---ATCG-GC---AACCT-AGGCCCCTAGTCGTGCGGGAGCC
1 CCAT-CGGCAA-CCT-AGGC-CCTTGGTCGTGCGGGAGCCTCGGGCACC-A-TCG-GC---A-CC
* * * * ** * * * *
193353435 TCGGGTACCATTGGCAACCTAGGCCTCGATCGTGCGAGAA
55 T-AGG--CCCTTGG--TCGT--G-CGGGAGCCT-CGGGCA
* ** * *
193353475 CC-TCGGGCACACCTTGGTGCTTGGAT-GTGCGGGAGGCTCGGACACCATCGGCAACCTAGGCCC
1 CCATC-GGCA-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCC
* *
193353538 TTGGTAGTGCGGGAGTCTCGGGCA
62 TTGGTCGTGCGGGAGCCTCGGGCA
* * * * ** *
193353562 CCATCGGC-ACCTTGGTGCCTTGGAT-GTACGGGCGCCTCGACCACCATCGGTAACCTAGGCCCT
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCT
* *
193353625 TCGTTGTGCGGGAGCCTCGGGCA
63 TGGTCGTGCGGGAGCCTCGGGCA
* * * * **
193353648 CCATCGGGAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTACCATCTGTAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTG
**
193353712 GTCGTGTAGGAGCCTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * * * * * *
193353733 CCATCGGC-ACCTAGGCCCTTGGTCCTGCGGGAGCCGCGGG-TCTATCGACACCAAGGTCTTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
193353796 TCGTGCGAGAGCCTC-GG-A
66 TCGTGCGGGAGCCTCGGGCA
* * * * * * *
193353814 CTATCGGC-ACCTCGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGGCACCTTTGGAGCTTT
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC-TAGG-CCCTT
* * * *
193353878 GAT-GTGCTGGAGCCCCGGACA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * ** *
193353899 CCTTCGGCAACCTAGGCCCTCGGTCGTGCGGGAGCCTCGAGAACCATCAGTAAGCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTG
* * *
193353964 GTCGTGC-GAAGCC-CCGGTA
65 GTCGTGCGGGAGCCTCGGGCA
* *
193353983 CCATCGGCAAACCTAGGCCCTTAGTCGTGCGGGAGCCTC-GGCACCATCGGTACCTAGGCCCTTG
1 CCATCGGC-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * * ** *
193354047 GTCTTGTGGAAGCCTCGAACG
65 GTCGTGCGGGAGCCTCGGGCA
* * * * *
193354068 CCATCGGCAACCTAGGCCCTTGGGCCATGTGGGAGCCTCGGGCATCATCGGCAACCTAGGCCCCT
1 CCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* *
193354133 GGTCGTGC-GGAACCTCGGGTA
64 GGTCGTGCGGGAGCCTCGGGCA
* * * * *
193354154 CCATCGGCAACCTTGG-CCTTGATCGTGCGGGAACCTC--G-AGCA----CACCTTGTG--CTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAG-GCCCTTG
* *
193354209 GAT-GTGCGGGAGCCTCAGACA
65 G-TCGTGCGGGAGCCTCGGGCA
* * * * *
193354230 CCATCGGCCAA-CTAGGCCCTT-GTCGTGCAGGAGCCTTGGGCACCATCGACACCTTGGTACCTT
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTT
193354293 GGAT-GTGCGGGAGCCTC
64 GG-TCGTGCGGGAGCCTC
193354310 NNNNNNNNNN
Statistics
Matches: 8338, Mismatches: 1832, Indels: 1080
0.74 0.16 0.10
Matches are distributed among these distances:
72 23 0.00
73 31 0.00
74 1 0.00
75 23 0.00
76 194 0.02
77 552 0.07
78 223 0.03
79 6 0.00
80 33 0.00
81 211 0.03
82 714 0.09
83 910 0.11
84 1447 0.17
85 2058 0.25
86 1529 0.18
87 154 0.02
88 12 0.00
89 4 0.00
91 3 0.00
92 23 0.00
93 20 0.00
94 25 0.00
95 23 0.00
96 40 0.00
97 5 0.00
98 3 0.00
99 4 0.00
100 5 0.00
101 4 0.00
102 16 0.00
103 2 0.00
104 6 0.00
105 32 0.00
106 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (85 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
TCGTGCGGGAGCCTCGGGCA
Found at i:193343645 original size:42 final size:43
Alignment explanation
Indices: 193343515--193354309 Score: 7346
Period size: 43 Copynumber: 257.9 Consensus size: 43
193343505 GCCTTAGACG
* * *
193343515 CCATCAGCAACCTAGGACGTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** ** * **
193343558 CCATCGGC-ACCTTGGTGCTTGGAT-GTATGGGAGTCTCGTTCA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* ** **
193343600 CCATCGGCAACCTAGGCCCCTGGTCGTGCGAAAGCCTC-GATA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193343642 CCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193343685 CCATTGGC-ACCTAGGACCTTGGTCTTGCGCGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** *
193343727 CCATCGG-TGCCTTGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * ** **
193343769 CCATCGAC-GCTTTGGTGCTTGGAT-GTGTAGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* *
193343811 CCATCGGCAACCTAGGCCCTTGGTCTTACGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193343854 CCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * **
193343897 CCATCGGTAACCTAGGCCCTTGTTCGTGCGGGAGCCTCGACCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193343940 CCATCGG-TACCTAGGCCCTTAGTCGTGAGGGAACCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * **
193343982 CCATCGGCAACCTAGGCCCTTGGTCGTACTGGAGATTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193344025 CCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGAA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193344068 CCATCGGTAACCTAGGCCCTTGGTCATGCGAGAGCCT-TGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193344110 CCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193344153 CCATCGG-TACCTAGGCCCTTGGTTGTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193344195 CCATCGGCAACCTAGGCCCTTGGTCTTACGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193344238 CCATCGACAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193344281 CCATCGGTAACCTAGGCCCTTGTTTGTGCGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** *
193344324 CCATCGGCAACCTAGGCCCTTGGTCGTATGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193344367 CCATCTGCAACTTAAGCCCCTGGTCGTGCGAGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193344410 CCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCTTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
193344452 CTATCGGC-ACCTAGGCCCTCAGTCGTGCGGGATCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *** * *
193344494 CCATCGGC-ACCTTGGTGATTCGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCA
* *
193344536 CTATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193344579 CCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193344622 CCATCGGTAACCT-GGGCCTTGATCGTGCGAGAACCTC--G-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** * *
193344661 GCA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTTGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193344699 CCATCGGCCAA-CTAGTCCCTTGGTCGTGCAGAAGCCTCGGGCA
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** *
193344742 CCATCGAC-ACCTTGGTACCTTGGAAGTGCGGGAGCCTCGGTCA
1 CCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * ***
193344785 CCACCGACAACCTAGGCCCTTGGTTGTGTGGTTTCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193344828 CCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** *
193344870 CCATCGGCAACCTAGGCCCTTGGTCGTATGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193344913 CCATCGGC-ACCTAGGCCCTTGGTTGTGCGGGAGCCTCGAG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193344954 CTATCGGC-ACGTAGGCCTTTGGTCGAGCGAGAGCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193344995 CTATCAGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
193345037 CCATCGGC-ACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193345079 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAACTTCGTGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193345122 CCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193345165 CCATTGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGG--
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** *
193345205 -CA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * *
193345242 CCATCGACAACCTAGGCCCTTAGTAGTGCGGGAGTCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193345285 CCATCGGC-ACCTTGGTGCCTTGGAT-GTACGGGAGCCTCGGTCA
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * *
193345328 CCATCGGTAACCTAGGCCCTTCGTTGTGTGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193345371 CCATCGGGAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193345413 CCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193345456 CCATCGGC-ACCTAGGCCTTTGGTCATGCGGGAGCCGCGGG-T
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193345497 CTACCGGC-ACCTAGGTCTTTGGTCGTGCGAGAGCCTCCGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193345538 CTATCGGC-ACTTAGGCCCTTGGTCGTACGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** *
193345580 CCATCGGC-ACCTTGGAGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193345622 CCTTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGAA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * * *
193345665 CCATCAGTAAGCTAGACCCTTGGTCATGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
193345707 CCATCGGCAACCTAGGCCCTT-G--GT---------TCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * ** *
193345738 CCATCGGT-ACCTAAGCCCCTGGTCGTGCGGAAGCCTCGAACG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193345780 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193345823 CCATCGGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** *
193345866 CCATCGGCAACCTAGG-CCTTGATCGTGCGAAAACCTC--G-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** **
193345905 GCA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC-GAAA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193345942 CCATCGGTCAA-CTGGGCCCTTGGTCCTGCGGGAGCCACGGGCA
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193345985 CCATCGAC-ACCTTGGTACCTTGGAT-GTGTGGGAGCCTCGGTCA
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * * *
193346028 GCATCGACAACCTAGGCCCTTGGTTGTGTGGGAGCCTCAGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
193346071 CCATCGGCAACCTAGGCCCCTAGTCGTGCTAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193346113 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGACCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193346156 TCATTGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193346197 CTATCGGC-ACCTAGACCCTTGTTCGTGCGAGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193346239 CCATCTGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193346282 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193346324 CTATCGGC-ACCTAGGCCCTCGGTCGTGCGGGATCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *** ***
193346366 CTATC-GCCACCTTGGTGATTGGAT-GTGCGGGAGCCTCATACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* *
193346408 CCATCGGTAACCTAGGCCTTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193346451 CCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193346494 CCATCGGTAACCTAGG-CCTTGATCGTGCGAGAACCTC--G-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
193346533 GCA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
*
193346571 CCATCGGCCAA-CTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCA
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193346614 CCATCGAC-ACCTTGGTACCTTGGTTGTGCGGGAGCCTCGGTCA
1 CCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * **
193346657 CCACCGACAACCTAGGCCCTTGGTTGTGTGGGTTCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193346700 CCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193346742 CCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193346785 CCATCGGC-ACCTAGTCACTTGGTCGTGCGAGAGCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193346826 CTATCAGC-ACCTAGGCCCTTGGTTGTGCGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193346868 CCATCGGC-ACCTTGGCGCTTGGAT-GTGCGGGAGCTTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * * *
193346910 CCATCGGTAACCTAGGCCCTCGGTCGTGCGGGAACTTCGTGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193346953 CCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193346995 CCATTGGCAACCTAGG-CCTTGATCATGCGTGAACCTCGGG--
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
193347035 -CA----C-ACCTTGGTGCTTGGAT-GTACGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193347072 CCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193347115 CCATCAGC-ACCTTGGTGCCTTGGAT-GTACGGGAGCCTCGGTCA
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * *
193347158 CCATCGGCAACCAAGGCCCTTCGTTGTGCGGGAGCCTCGGGCT
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193347201 CCTTCGGGAACCTA-GCCCCTGGTCATGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193347242 CCATCGGTAACCTAGGCCCTTGGTCGTTC-GGAGCCTCGTGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193347284 CCATCGGC-ACTTAGGCCCTTGGTCATGCGGGAGCCGCGGG-T
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193347325 CTATCGGC-ACCTAGGTCTTTGGTGGTGCGAGAGCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193347366 CTATCGGC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
193347408 CCATCGG-TACCTTGGAGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * *
193347450 CCTTCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGAA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193347493 CTATCAGTAAGCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193347535 CCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** *
193347578 CCATCGG-TACCTAGGCCCCTGGTCGTGCGGAAGCCTCGAACG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193347620 CCATCGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193347663 CCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193347706 CCATCGGCAACCTAGG-CCTTGATCGTGCGGGAACCTC--G-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
193347745 GCA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* *
193347783 CCATTGGCCAA-CTAGGCCCTTGGTCCTGC-GGAGCCTCGGGCA
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193347825 CCATCGAC-ACTTTGGTACCTTGGAT-GTGTGGGAGCCTCGGTCA
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * * ** *
193347868 GCACCGACAACCTAGACCCTTGGTTATGTGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193347911 CCATCAGCAACCTAGGCCCCTAGTCATGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193347953 CCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193347995 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * **
193348038 TCATCGGC-ACCTAGG-CCTTGGTCGTGCGAGAGTTTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193348078 CTATAGGC-AGCTAGGCCCTTAGTCGTGCGAGG-GCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCA
* * * *
193348119 CTATCAGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193348160 CTATCAGC-ACCTAGGCCCTTGGTCG-GCACCTTGGTGCTTGGATGTGCGGGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTG---C-GGGAGCCTCG--G-GC---A
* * * * * * * **
193348211 GCC-TCGG-ACACCATCGGCAACCTAGGCCCT--TGG-TCGT-GCGAAA
1 -CCATCGGCA-ACC-TAGGC--CCTTGGTCGTGCGGGAGCCTCG-GGCA
* * ** * * *
193348254 GCC-TCGGGC-ACCATCGGCAACCTAGG-C-CCCTGG-TCGTGCGGGAGCCTCGGGTA
1 -CCATC-GGCAACC-TAGGC--CCTTGGTCGTGCGGGAGCCT-C-GG-G---C----A
* * * * *
193348307 CCATTGGCAACCTAGG-CCTCGATCGTGCGAGAACCTCGGG--
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
193348347 -CA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGGCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193348384 CTATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193348427 CCATCTGC-ACCTTGGTGCCTTGGAT-GTACGGGCGCCTC-GCCA
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193348469 CCATCGGTAACCTAGGCCCTTCGTTGTGCGGGAGCCTC-GGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193348511 CCATCGGGAACCTAGGCCCCTAGTCGTGCGAGAGCCAC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193348553 -CATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193348595 CCATCGGC-ACCTAGGCCCTTGGTCCTGCGGGAGCCGCGGG-T
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193348636 CTATCGAC-ACCAAGGTCTTTGGTCGTGCGAGAGCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193348677 CTATCGGC-ACCTCGGCCCTTGGTCGTACGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * * *
193348719 CCATCGGC-ACCTTGGAGCTTGGAT-GTGCTGGAGCCCCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * *
193348761 CCTTCGGCAACCTAGGCCCTCGGTCGTGCGGGAGCCTCGAGAA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193348804 CCATCAGTAAGCTAGGCCCTTGGTCGTGCGAGAGCC-CCGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193348846 CCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** *
193348889 CCATCGG-TACCTAGGCCCTTGGTCGTGCGGAAGCCTTGAACG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193348931 CCATCGGCAACCTAGGCCCTTGGTCGTGAGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193348974 TCATCGACAACCTAGGCCC-TGGTCGTGCGAGAACCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193349016 CCATCGGCAACCTTGG-CCTTGATCGTGCGGGAACCTC--G-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
193349055 GCA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
*
193349093 CCATCGGCCAA-CTAGGCCC-TGGTCGTGCGGGAGCCTCGGGTA
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193349135 CCATTGGCAACCTAGG-CCTCGATCGTGCGAGAACCTCGGG--
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
193349175 -CA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGGCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193349212 CTATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * **
193349255 CCATCGGC-ACCTTGGTGCCTTGGAT-GTACGGGCGCCTCGACCA
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193349298 CCATCGGTAACCTAGGCCCTTCGTTGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193349341 CCATCGGGAACCTAGGCCCCTAGTCGTGCGAGAGCCAC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193349383 CCATC-GTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193349425 CCATCGGC-ACCTAGG-CCTTGGTCCTGCGTGAGCCGCGGG-T
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * * * *
193349465 CTATCAAC-ACCAAGGTCTTTGGTCGTGCGAGAGCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193349506 CTATCGGC-ACCTCGGCCCTTGGTTGTACGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * * *
193349548 CCATCGGC-ACCTTGGAGCTTGGAT-GTGCTGGAGCCCCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193349590 CCTTCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGAGAA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * * *
193349632 CCATCAGTAAGCTAGGCCCTTGGTCATGCGAGAGCC-CCGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193349674 CCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
193349717 CCATCGG-TACCTAGGCCCTTGGTCGTGCGGAAGCCTCGAACG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193349759 CCATCGGCAACCTAGGCCCTTGGTCGTGAGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193349802 TCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAACCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193349845 CCATCGGCAACCTTGG-CCTTGATCGTGCGGGAACCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193349887 -CACTTGG-----T--G--CTTGGAT-GTGCGGGAGCCTCGGACA
1 CCA-TCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
*
193349921 CCATCGGCCAA-CTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCA
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193349964 CCATCGAC-ACCTTGGTACCTTGGAT-GTGCGGGAGCCTCGGTCA
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * * * **
193350007 ACACCGACAA-CTAGGCCCTTGGTTGTGTGGGTTCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193350049 CCATCGGCAACCTAAGGCCC-TGGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCT-AGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
193350091 CCATTGGCAACCTAGGCCCCTGGTCGTGCAAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** * * * *
193350133 CCATTAGCAACCTACGCCCTTGGTCGTACGGGTGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193350176 CCATCGGC-ACCTAGGCCCTTGGTTGTGCGGGAGCCTCGAG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193350217 CTATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
193350258 CTATCAAC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
193350300 CCATC-GC-ACCTTGGTGCTTGAAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTG-GTCGTGCGGGAGCCTCGGGCA
* * * * *
193350341 CCATCGGCAACCTAAGCCCTCGATCGTGCGGGAACCTCGTGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193350384 CCATCAGCAACCTAGGCCC-TAGTCGTGCGGGAGCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193350426 CCATTGGCAACCTAGG-CCGTGATCGTGCGTGAACCTCGGG--
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * * *
193350466 -CA----C-ACCTTGGTGCTTAGAT-GTGCGGGTGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCA
* * *
193350503 CCATCGGCAACCTGGGCCCTTGGTAGTGCGGGAGTCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
193350546 CCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193350587 CCATCGGTAACCTAGGCCCTTGGTCGTTCGGGAGCCTCGTGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193350630 CCATCGGC-ACCTAGGCCCTTGGTCATGCGGGAGCCGCGGG-T
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193350671 CTATCGGC-ACCTAGGTCTTTGGTGGTGCGAGAGCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193350712 CTATCGGC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
193350754 CCATCGG-TACCTTGGAGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* **
193350796 CCTTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGAAA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GGCA
* * * * * *
193350840 CTATCAGTAAGCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193350882 CCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * ** *
193350925 CTATCGG-TACCTAGGCCCCTGGTCGTGCGGAAGCCTCGAACG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193350967 CCATTGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193351010 CCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193351052 CCATCGGTAACCTAGG-CCTTGATCGTGCGGGAACCTC--G-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
193351091 GCA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* *
193351129 CCATTGGCCAA-CTAGGCCCTTGGTCCTGCGGGAGCCTCGGGCA
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193351172 CCATCGAC-ACTTTGGTACCTTGGAT-GTGTGGGAGCCTCGGTCA
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * * ** *
193351215 GCACCGACAACCTAGACCCTTGGTTATGTGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193351258 CCATCAGCAACCTAGGCCC-TAGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193351299 CCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193351341 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193351384 TCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGTCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193351425 CTATAGGC-AGCTAGGCCCTTAGTCGTGCGAGG-GCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCA
* * * * *
193351466 CTATCAGC-ACCTAGGCCCTTGGTCGTGCGAGAGCTTCGAG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193351507 CTATCAGC-ACCTAGGCCCTTGGTCG-GCACCTTGGTGCTTGGATGTGCGGGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTG---C-GGGAGCCTCG--G-GC---A
* * * * * *
193351558 GCC-TCGG-ACACCATCGGCAACCTAGG-C-T-CTTGG-TCGTGCGAAAGC-
1 -CCATCGGCA-ACC-TAGGC--CCTTGGTCGTGC-GGGAGCCT-CG--GGCA
** * *
193351603 CTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTA
1 C-CAT-------CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193351654 CCATTGGCAACCTAGG-CCTCGATCGTGCGAGAACCTCGGG--
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
193351694 -CA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGGCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193351731 CTATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193351774 CCATCGGC-ACCTTGGTGCCTTGGAT-GTAC-GGCGCCTCGAGCA
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* *
193351816 CCATCGG-AACCTA-------GGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193351850 CCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193351893 CCATCGGC-ACCTAGGCCCTTGGTCCTGCGGGAGCCGCGGG-T
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193351934 CTATCGAC-ACCAAGGTCTTTGGTCGTGCGAGAGCCTC-GG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193351974 CTATCGGC-ACCTCGGCCCTTGGTCGTACGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * * *
193352016 CCATCGGC-ACCTTGGAGCTTGGAT-GTGCTGGAGCCCCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193352058 CCTTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGAA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * * * *
193352101 CCATCAGTAAGCTAGGCCCTTGGTCATGTGAGAGCC-C-CGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193352142 CCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
193352185 CCATCGG-TACCTA-GCCCTTGGTCGTGCGGAAGCCTCGAACG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193352226 CCATC-GCAACCTAGGCCCTTGGTCGTG-AGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193352267 TCATCGGCAACCTAGGCCCCTGGTCGGGCGAGAACCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193352309 CCATCGGCAACCTTGG-CCTTGATCGTGCGGGAACCTC--G--
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
193352347 --AGC-GC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
*
193352386 CCATCGGCCAA-CTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCA
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193352429 CCATCGAC-ACCTTGGTACCCTTGGAT-GTGCGGGAGCCTCGGTCA
1 CCATCGGCAACCTAGG--CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * * ** *
193352473 CCACCGACAACCTAGG-CCTTGGT-TTGTGGGTTCCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193352514 CCATCGGCAACCTAAGGCCC-TGGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCT-AGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193352556 CCATCGGCAACCTAGGCCCCTGGTCGTGC-AGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** * * * *
193352597 CCATTAGCAACCTACGCCCTTGGTCGTAC-GGTGCCTCGAGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193352639 CCATCGGC-ACCTAGGCCCTTGGTTGTGCGGGAGCCTCGAG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193352680 CTATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** ** *
193352721 GTATCAAC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG-CA
* ** * * *
193352764 CCATCGGC-ACCTTGGTGCTTGAAT-GTGCAGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTG-GTCGTGCGGGAGCCTCGGGCA
* * * * *
193352806 CCATC-GCAACCTAGGCCCTCGATCGTGTGGGAACCTCGTGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193352848 CCAATCAGCAACCTAGGCCC-TAGTCGTGTGGGAGCCTC-GGTA
1 CC-ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
193352890 CCATTGGCAACCTAGG-CCGTGATCGTGCGAGAACCTCGGG--
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * * *
193352930 -CA----C-ACCTTGGTGCTTAGAT-GTGC-GGTGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCA
* * *
193352966 CCATCGGCAACCTGGGCCCTTGGTAGTGCGGGAGTCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * *
193353009 CCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193353050 CCATCGGTAACCTAGGCCCTTGGTCGTTC-GGAGCCTCGTGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193353092 CCATCGGC-ACCTAGG-CCTTGGTCATGCGGGAGCCGCGGG-T
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
193353132 CTATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193353174 TCATCGGC-ACCTAGGCCC-TGGTCGAGCGAGAGTCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193353214 CTATAGGC-AGCTAGG-CCTTGGTCGTGCGAGG-GCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCA
* * * * *
193353254 CTATCAGC-ACCTAGACCCTTGGTCGTGCGAGTGCCTCGGG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193353295 CTATCAGC-ACCTAGGCCCTTGGTCG-GCACCTTGGTGCTTGGATGTGCGGGA
1 CCATCGGCAACCTAGGCCCTTGGTCGTG---C-GGGAGCCTCG--G-GC---A
* * * * * * * *
193353346 GCC-TCGG-ACACCATCGGCAACCTAGGACCT--TGG-TCAT-GCGGAA
1 -CCATCGGCA-ACC-TAGGC--CCTTGGTCGTGCGGGAGCCTCG-GGCA
* * *** *
193353389 GCC-TCGGGC-ACCATCGGCAACCTAGG-C---CCCTAGTCGTGCGGG-A
1 -CCATC-GGCAACC-TAGGC--CCTTGGTCGTGCGGGAG-CCT-CGGGCA
** * * * * * * *
193353432 GCC-TCGGGTACCATTGGCAACCTAGG-CCT-C--GATCGTGCGAGAA
1 -CCATCGGCAACC-TAGGC--CCTTGGTCGTGCGGGAGCCT-CGGGCA
* ** * *
193353475 CC-TCGGGCACACCTTGGTGCTTGGAT-GTGCGGGAGGCTCGGACA
1 CCATC-GGCA-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* *
193353519 CCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * **
193353562 CCATCGGC-ACCTTGGTGCCTTGGAT-GTACGGGCGCCTCGACCA
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
193353605 CCATCGGTAACCTAGGCCCTTCGTTGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193353648 CCATCGGGAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * **
193353690 CCATCTGTAACCTAGGCCCTTGGTCGTGTAGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193353733 CCATCGGC-ACCTAGGCCCTTGGTCCTGCGGGAGCCGCGGG-T
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193353774 CTATCGAC-ACCAAGGTCTTTGGTCGTGCGAGAGCCTC-GG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193353814 CTATCGGC-ACCTCGGCCCTTGGTCGTACGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * * *
193353856 CCATCGGC-ACCTTTGGAGCTTTGAT-GTGCTGGAGCCCCGGACA
1 CCATCGGCAACC-TAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193353899 CCTTCGGCAACCTAGGCCCTCGGTCGTGCGGGAGCCTCGAGAA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * *
193353942 CCATCAGTAAGCTAGGCCCTTGGTCGTGC-GAAGCC-CCGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
193353983 CCATCGGCAAACCTAGGCCCTTAGTCGTGCGGGAGCCTC-GGCA
1 CCATCGGC-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * ** *
193354026 CCATCGG-TACCTAGGCCCTTGGTCTTGTGGAAGCCTCGAACG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193354068 CCATCGGCAACCTAGGCCCTTGGGCCATGTGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCA
* * * *
193354112 TCATCGGCAACCTAGGCCCCTGGTCGTGC-GGAACCTCGGGTA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193354154 CCATCGGCAACCTTGG-CCTTGATCGTGCGGGAACCTC--G-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
193354193 GCA----C-ACCTTGTG--CTTGGAT-GTGCGGGAGCCTCAGACA
1 CCATCGGCAACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* *
193354230 CCATCGGCCAA-CTAGGCCCTT-GTCGTGCAGGAGCCTTGGGCA
1 CCATCGG-CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
193354272 CCATCGAC-ACCTTGGTACCTTGGAT-GTGCGGGAGCCTC
1 CCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTC
193354310 NNNNNNNNNN
Statistics
Matches: 8487, Mismatches: 1730, Indels: 1070
0.75 0.15 0.09
Matches are distributed among these distances:
30 12 0.00
31 11 0.00
33 3 0.00
34 149 0.02
35 237 0.03
36 20 0.00
37 9 0.00
38 24 0.00
39 39 0.00
40 170 0.02
41 1524 0.18
42 2829 0.33
43 3075 0.36
44 231 0.03
45 16 0.00
46 3 0.00
47 5 0.00
48 2 0.00
49 13 0.00
50 22 0.00
51 17 0.00
52 31 0.00
53 26 0.00
54 2 0.00
55 17 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (43 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
Found at i:193348076 original size:41 final size:41
Alignment explanation
Indices: 193347899--193348184 Score: 322
Period size: 41 Copynumber: 6.9 Consensus size: 41
193347889 GGTTATGTGG
* * * * *
193347899 GAGCCTCGGGCACCATCAGCAACCTAGGCCCCTAGTCATGCGA
1 GAGCCTCGGG-ACTATCGGC-ACCTAGGCCCTTGGTCGTGCGA
* * * *
193347942 GAGCCTCGGTACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
1 GAGCCTCGGGACTATCGG-CACCTAGGCCCTTGGTCGTGCGA
* * *
193347984 GAGCCTCGGTACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGACTATCGGC-ACCTAGGCCCTTGGTCGTGCGA
*
193348026 GAGCCTCGGGAATCATCGGCACCTAGG-CCTTGGTCGTGCGA
1 GAGCCTCGGGACT-ATCGGCACCTAGGCCCTTGGTCGTGCGA
** * * *
193348067 GAGTTTCGGGACTATAGGCAGCTAGGCCCTTAGTCGTGCGA
1 GAGCCTCGGGACTATCGGCACCTAGGCCCTTGGTCGTGCGA
* *
193348108 GGGCCTCGGGACTATCAGCACCTAGGCCCTTGGTCGTGCGA
1 GAGCCTCGGGACTATCGGCACCTAGGCCCTTGGTCGTGCGA
* *
193348149 GAGCCTCGAGACTATCAGCACCTAGGCCCTTGGTCG
1 GAGCCTCGGGACTATCGGCACCTAGGCCCTTGGTCG
193348185 GCACCTTGGT
Statistics
Matches: 212, Mismatches: 27, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
40 11 0.05
41 104 0.49
42 82 0.39
43 15 0.07
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.19
Consensus pattern (41 bp):
GAGCCTCGGGACTATCGGCACCTAGGCCCTTGGTCGTGCGA
Found at i:193348569 original size:41 final size:42
Alignment explanation
Indices: 193348467--193351499 Score: 961
Period size: 42 Copynumber: 72.9 Consensus size: 42
193348457 GGCGCCTCGC
* * *
193348467 CACCATCGGTAACCTAGGCCCTTCGTTGTGCGGGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * *
193348509 CACCATCGGGAACCTAGGCCCCTAGTCGTGCGAGAGCCACGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * *
193348551 TA-CATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * *
193348593 CACCATCGG-CACCTAGGCCCTTGGTCCTGCGGGAGCCGCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
** * * * * * * *
193348634 GTCTATC-G-ACACCAAGGTCTTTGGTCGTGCGAGAGCCTCGG
1 CACCATCGGTA-ACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * * * * * *
193348675 GACTATCGG-CACCTCGGCCCTTGGTCGTACGGGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * ** * * *
193348716 CCACCATCGG-CACCTTGGAGCTTGGAT-GTGCTGGAGCCCCGG
1 -CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * ** *
193348758 ACACCTTCGGCAACCTAGGCCCTCGGTCGTGCGGGAGCCTCGAG
1 -CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACG-G
* * * * * *
193348802 AACCATCAGTAAGCTAGGCCCTTGGTCGTGCGAGAGCCCCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * *
193348844 TACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * ** *
193348887 CACCATCGGT-ACCTAGGCCCTTGGTCGTGCGGAAGCCTTGAA
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACG-G
* * * * *
193348929 CGCCATCGGCAACCTAGGCCCTTGGTCGTGAGGGAGCCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* ** * * * *
193348972 CATCATCGACAACCTAGGCCC-TGGTCGTGCGAGAACCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * * *
193349014 TACCATCGGCAACCTTGG-CCTT-GATCGTGCGGGAACCTC-G
1 CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * ** * *
193349054 -AGCA-C----ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * *
193349090 ACACCATCGGCCAA-CTAGGCCC-TGGTCGTGCGGGAGCCTCGGG
1 -CACCATCGG-TAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * * * * *
193349133 TACCATTGGCAACCTAGG-CC-TCGATCGTGCGAGAACCTCGG
1 CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * ** * * *
193349174 --GCA-C----ACCTTGGTGCTTGGAT-GTGCGGGAGGCTCGG
1 CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * * * * *
193349209 ACACTATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGG
1 -CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * * * * * *
193349253 CACCATCGG-CACCTTGGTGCCTTGGAT-GTACGGGCGCCTCGAC
1 CACCATCGGTAACCTAGG-CCCTTAG-TCGTGCGGGAGCCACG-G
* * *
193349296 CACCATCGGTAACCTAGGCCCTTCGTTGTGCGGGAGCCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * *
193349339 CACCATCGGGAACCTAGGCCCCTAGTCGTGCGAGAGCCACGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * *
193349381 TACCATC-GTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * * *
193349423 CACCATCGG-CACCTAGG-CCTTGGTCCTGCGTGAGCCGCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
** * * * * * * * *
193349463 GTCTATC--AACACCAAGGTCTTTGGTCGTGCGAGAGCCTCGG
1 CACCATCGGTA-ACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * * * * * * *
193349504 GACTATCGG-CACCTCGGCCCTTGGTTGTACGGGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * ** * * *
193349545 CCACCATCGG-CACCTTGGAGCTTGGAT-GTGCTGGAGCCCCGG
1 -CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * * *
193349587 ACACCTTCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGAG
1 -CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACG-G
* * * * * * *
193349630 AACCATCAGTAAGCTAGGCCCTTGGTCATGCGAGAGCCCCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * *
193349672 TACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * *
193349715 CACCATCGGT-ACCTAGGCCCTTGGTCGTGCGGAAGCCTCGAA
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACG-G
* * * * *
193349757 CGCCATCGGCAACCTAGGCCCTTGGTCGTGAGGGAGCCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * * * * *
193349800 CATCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAACCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * * *
193349843 TACCATCGGCAACCTTGG-CCTT-GATCGTGCGGGAACCTCGAG
1 CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACG-G
** * *
193349885 CA-CA-C--T----T-GGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * * *
193349918 ACACCATCGGCCAA-CTAGGCCCTTGGTCGTGCAGGAGCCTCGGG
1 -CACCATCGG-TAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * *
193349962 CACCATC-G-ACACCTTGGTACCTTGGAT-GTGCGGGAGCCTCGG
1 CACCATCGGTA-ACCTAGG-CCCTTAG-TCGTGCGGGAGCCACGG
* * ** * * * ** *
193350004 TCAACACCGACAA-CTAGGCCCTTGGTTGTGTGGGTTCCTCGGG
1 -CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * *
193350047 CACCATCGGCAACCTAAGGCCC-TGGTCGTGCGAGAGCCTCGG
1 CACCATCGGTAACCT-AGGCCCTTAGTCGTGCGGGAGCCACGG
* * * * * ** *
193350089 TACCATTGGCAACCTAGGCCCCTGGTCGTGCAAGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* ** * * * * * *
193350131 TACCATTAGCAACCTACGCCCTTGGTCGTACGGGTGCCTCGAG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACG-G
* * * *
193350174 CACCATCGG-CACCTAGGCCCTTGGTTGTGCGGGAGCCTCGAG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACG-G
* * * * *
193350216 -ACTATCGG-CACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * * * * *
193350256 GACTATC--AACACCTAGGCCCTTGGTCGTACGGGAGCCTCGG
1 CACCATCGGTA-ACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * ** * *
193350297 CCACCATC-G-CACCTTGGTGCTTGAAT-GTGCGGGAGCCTCGG
1 -CACCATCGGTAACCTAGGCCCTT-AGTCGTGCGGGAGCCACGG
* * * * *
193350338 ACACCATCGGCAACCTAAGCCC-TCGATCGTGCGGGAACCTCGTG
1 -CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACG-G
* * *
193350382 CACCATCAGCAACCTAGGCCC-TAGTCGTGCGGGAGCCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * * * * * *
193350424 TACCATTGGCAACCTAGGCCGTGA-TCGTGCGTGAACCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * ** * *
193350465 --GCA-C----ACCTTGGTGCTTAGAT-GTGCGGGTGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * * * * *
193350500 ACACCATCGGCAACCTGGGCCCTTGGTAGTGCGGGAGTCTCGGG
1 -CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * ** * * *
193350544 CACCATCGG-CACCTTGGTGCTTGGAT-GTGCGAGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * * *
193350585 TACCATCGGTAACCTAGGCCCTTGGTCGTTCGGGAGCCTCGTG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACG-G
* * * *
193350628 CACCATCGG-CACCTAGGCCCTTGGTCATGCGGGAGCCGCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
** * * * * * * * *
193350669 GTCTATCGG-CACCTAGGTCTTTGGTGGTGCGAGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * * * * *
193350710 GACTATCGG-CACCTAGGCCCTTGGTCGTACGGGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* ** * *
193350751 CCACCATCGGT-ACCTTGGAGCTTGGAT-GTGCGGGAGCCTCGG
1 -CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * * *
193350793 ACACCTTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG
1 -CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACG-G
* * * * * * *
193350837 AAACTATCAGTAAGCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
1 -CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * * * *
193350880 TACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * * * *
193350923 CACTATCGGT-ACCTAGGCCCCTGGTCGTGCGGAAGCCTCGAA
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACG-G
* * * * * *
193350965 CGCCATTGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * *
193351008 CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * *
193351050 TACCATCGGTAACCTAGG-CCTT-GATCGTGCGGGAACCTC-G
1 CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * ** * *
193351090 -AGCA-C----ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAG-TCGTGCGGGAGCCACGG
* * * * *
193351126 ACACCATTGGCCAA-CTAGGCCCTTGGTCCTGCGGGAGCCTCGGG
1 -CACCATCGG-TAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * * * *
193351170 CACCATC-G-ACACTTTGGTACCTTGGAT-GTGTGGGAGCCTCGG
1 CACCATCGGTA-ACCTAGG-CCCTTAG-TCGTGCGGGAGCCACGG
* * ** * * ** * *
193351212 TCAGCACCGACAACCTAGACCCTTGGTTATGTGGGAGCCTCGGG
1 -CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * *
193351256 CACCATCAGCAACCTAGGCCC-TAGTCGTGCGAGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * * * *
193351297 TACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * * *
193351339 TACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCAC-GG
* * * * * * *
193351382 AATCATCGG-CACCTAGGCCCTTGGTCGTGCGAGAGTCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
* * * * * *
193351423 GACTATAGG-CAGCTAGGCCCTTAGTCGTGCGAGG-GCCTCGG
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCG-GGAGCCACGG
* * * * * *
193351464 GACTATCAG-CACCTAGGCCCTTGGTCGTGCGAGAGC
1 CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGC
193351500 TTCGAGACTA
Statistics
Matches: 2376, Mismatches: 455, Indels: 321
0.75 0.14 0.10
Matches are distributed among these distances:
33 3 0.00
34 46 0.02
35 60 0.03
36 14 0.01
38 11 0.00
39 13 0.01
40 21 0.01
41 498 0.21
42 942 0.40
43 692 0.29
44 74 0.03
45 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (42 bp):
CACCATCGGTAACCTAGGCCCTTAGTCGTGCGGGAGCCACGG
Found at i:193349160 original size:119 final size:119
Alignment explanation
Indices: 193348845--193349263 Score: 459
Period size: 119 Copynumber: 3.4 Consensus size: 119
193348835 GAGCCCCGGT
* * * *
193348845 ACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGG-TACCTAGGCCCTT
1 ACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGGTACCATCGGCAACCTAGG-CCTC
* * * ** * *
193348909 GGTCGTGCG-GAAGCCTTGAACGCCATCGGCAACCTAGGCCCTTGG-TCGTGAGGGAGCCTCGGG
64 GATCGTGCGAGAA-CCTCG-A-G-CA----C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGA
193348972 C
119 C
* * * * * *
193348973 ATCATCGACAACCTAGGCCCTGGTCGTGCGAGAACCTCGGGTACCATCGGCAACCTTGGCCTTGA
1 ACCATCGGCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCTCGA
*
193349038 TCGTGCGGGAACCTCGAGCACACCTTGGTGCTTGGATGTGCGGGAGCCTCGGAC
66 TCGTGCGAGAACCTCGAGCACACCTTGGTGCTTGGATGTGCGGGAGCCTCGGAC
*
193349092 ACCATCGGCCAA-CTAGGCCCTGGTCGTGCGGGAGCCTCGGGTACCATTGGCAACCTAGGCCTCG
1 ACCATCGG-CAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCTCG
* *
193349156 ATCGTGCGAGAACCTCGGGCACACCTTGGTGCTTGGATGTGCGGGAGGCTCGGAC
65 ATCGTGCGAGAACCTCGAGCACACCTTGGTGCTTGGATGTGCGGGAGCCTCGGAC
* * * *
193349211 ACTATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGCACCATCGGCA
1 ACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGGTACCATCGGCA
193349264 CCTTGGTGCC
Statistics
Matches: 255, Mismatches: 30, Indels: 20
0.84 0.10 0.07
Matches are distributed among these distances:
118 3 0.01
119 146 0.57
120 33 0.13
124 2 0.01
125 1 0.00
126 1 0.00
127 42 0.16
128 27 0.11
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (119 bp):
ACCATCGGCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCTCGA
TCGTGCGAGAACCTCGAGCACACCTTGGTGCTTGGATGTGCGGGAGCCTCGGAC
Found at i:193350582 original size:162 final size:163
Alignment explanation
Indices: 193349673--193351089 Score: 491
Period size: 162 Copynumber: 8.5 Consensus size: 163
193349663 GAGCCCCGGT
* * * *
193349673 ACCATCGGCAACCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTAGGCCCTTG
1 ACCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGCCTCGAGCACCATCGGCACCTAGG-CCTTG
**** * * *
193349738 GTCGTGCG-GAAGCCTCGAACGCCATCGGCAACCTAGGCCCTTGGTCGTGA-GGGAGCCTCGGGC
65 GTCGTGCGAG-AGCCTCGGGTACCATCGGCAACCTAGG-CCGTGATCGT-ACGGGAACCTC-GGC
* * ** * * * ** **
193349801 ATCATCGGCAACCTAGGCCCCTG-GTCGTGCGAGAACCTCGGGT
126 -CCA-C--C-ACCTTGGTGCTTGAAT-GTGCGGGTGCCTCGGAC
* * * * *
193349844 ACCATCGGCAACCTTGG-CCTTGATCGTGCGGGAACCTCGAGCA-CACTTGG----T--G-CTTG
1 ACCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGCCTCGAGCACCA-TCGGCACCTAGGCCTTG
* ** * * * * *
193349900 GAT-GTGCGGGAGCCTCGGACACCATCGGCCAA-CTAGGCCCTTGGTCGTGCAGGAGCCTCGGGC
65 G-TCGTGCGAGAGCCTCGGGTACCATCGG-CAACCTAGG-CCGTGATCGTACGGGAACCTC-GGC
* * * *
193349963 ACCATCGACACCTTGGTACCTTGGATGTGCGGGAGCCTCGGTC
126 -CCA-C--CACCTTGGT-GCTTGAATGTGCGGGTGCCTCGGAC
* * * * * ** * *
193350006 AACACCGACAA-CTAGGCCCTTGGTTGTGTGGGTTCCTCGGGCACCATCGGCAACCTAAGGCCCT
1 ACCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGCCTCGAGCACCATCGGC-ACCT-AGGCCTT
* * * * ** *
193350070 GGTCGTGCGAGAGCCTC-GGTACCATTGGCAACCTAGGCCCCTGGTCGTGCAAGAGCCTCGGTAC
64 GGTCGTGCGAGAGCCTCGGGTACCATCGGCAACCTAGG-CCGTGATCGTACGGGAACCTCGG--C
* * ** ** * *
193350134 CATTAGCAACCTACGCCCTTG-GTCGTACGGGTGCCTC-GAGC
126 C--CA-CCACCTTGGTGCTTGAAT-GTGCGGGTGCCTCGGA-C
* *
193350175 ACCATCGGC-ACCTAGGCCCTTGGTTGTGCGGGAGCCTCGAG-ACTATCGGCACCTAGGCCCTTG
1 ACCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGCCTCGAGCACCATCGGCACCTAGG-CCTTG
* ** * * *
193350238 GTCGTGCGAGAGCCTCGGG-ACTATCAAC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGCCAC
65 GTCGTGCGAGAGCCTCGGGTACCATCGGCAACCTAGG-CCGTGATCGTACGGGAACCTCGG-C-C
*
193350301 CATCGCACCTTGGTGCTTGAATGTGCGGGAGCCTCGGAC
127 CA-C-CACCTTGGTGCTTGAATGTGCGGGTGCCTCGGAC
* * * * * * * * *
193350340 ACCATCGGCAACCTAAGCCCTCGATCGTGCGGGAACCTCGTGCACCATCAGCAACCTAGGCCCTA
1 ACCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGCCTCGAGCACCATCGGC-ACCTAGGCCTTG
* * * * *
193350405 GTCGTGCGGGAGCCTCGGGTACCATTGGCAACCTAGGCCGTGATCGTGCGTGAACCTCGG-GCA-
65 GTCGTGCGAGAGCCTCGGGTACCATCGGCAACCTAGGCCGTGATCGTACGGGAACCTCGGCCCAC
193350468 CACCTTGGTGCTT-AGATGTGCGGGTGCCTCGGAC
130 CACCTTGGTGCTTGA-ATGTGCGGGTGCCTCGGAC
* * * * *
193350502 ACCATCGGCAACCTGGGCCCTTGGTAGTGCGGGAGTCTCGGGCACCATCGGCACCTTGGTGCTTG
1 ACCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGCCTCGAGCACCATCGGCACCTAGG-CCTTG
* * * * *
193350567 GAT-GTGCGAGAGCCTC-GGTACCATCGGTAACCTAGGCCCTTGGTCGTTCGGGAGCCTCGTGCA
65 G-TCGTGCGAGAGCCTCGGGTACCATCGGCAACCTAGG-CCGTGATCGTACGGGAACCTCG-GC-
* ** * * * * *
193350630 CCATCGGCACCTAGGCCCTTG-GTCATGCGGGAGCCGCGG-G
126 CCA-C--CACCTTGGTGCTTGAAT-GTGCGGGTGCCTCGGAC
* * * * * * * *
193350670 TCTATCGGC-ACCTAGGTCTTTGGTGGTGCGAGAGCCTCG-GGACTATCGGCACCTAGGCCCTTG
1 ACCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGCCTCGAGCACCATCGGCACCTAGG-CCTTG
* * ** * * * * * *
193350733 GTCGTACGGGAGCCTCGGCCACCATCGG-TACCTTGGAGCTTGGAT-GTGCGGGAGCCTCGGACA
65 GTCGTGCGAGAGCCTCGGGTACCATCGGCAACCTAGG-CCGT-GATCGTACGGGAACCTCGG-C-
* * ** * * *
193350796 CCTTCGGCAACCTAGGCCCTTG-GTCGTGCGGGAGCCTCGAGAA
126 CC-AC--C-ACCTTGGTGCTTGAAT-GTGCGGGTGCCTCG-GAC
* * * * * * *
193350839 ACTATCAGTAAGCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GTACCATCGGCAACCTAGGCCCTT
1 ACCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGCCTCGAGCACCATCGGC-ACCTAGG-CCTT
* * * * * * * * *
193350903 GGTCGTACGGGAGCCTCGGGCACTATCGG-TACCTAGGCCCCTGGTCGTGC-GGAAGCCTCGAAC
64 GGTCGTGCGAGAGCCTCGGGTACCATCGGCAACCTAGG-CCGTGATCGTACGGGAA-CCTCG-GC
* * ** * * *
193350966 GCCATTGGCAACTTAGGCCCTTG-GTCGTGCGGGAGCCTCGGGC
126 -CCA---CCACCTT-GGTGCTTGAAT-GTGCGGGTGCCTCGGAC
* * * *
193351009 ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG-GTACCATCGGTAACCTAGGCCTTG
1 ACCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGCCTCGAGCACCATCGG-CACCTAGGCCTTG
* * *
193351073 ATCGTGCGGGAACCTCG
65 GTCGTGCGAGAGCCTCG
193351090 AGCACACCTT
Statistics
Matches: 987, Mismatches: 190, Indels: 140
0.75 0.14 0.11
Matches are distributed among these distances:
161 35 0.04
162 215 0.22
163 10 0.01
164 3 0.00
165 37 0.04
166 122 0.12
167 121 0.12
168 52 0.05
169 110 0.11
170 161 0.16
171 119 0.12
172 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (163 bp):
ACCATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGCCTTGG
TCGTGCGAGAGCCTCGGGTACCATCGGCAACCTAGGCCGTGATCGTACGGGAACCTCGGCCCACC
ACCTTGGTGCTTGAATGTGCGGGTGCCTCGGAC
Found at i:193351509 original size:41 final size:42
Alignment explanation
Indices: 193351111--193354309 Score: 1406
Period size: 42 Copynumber: 76.3 Consensus size: 42
193351101 GTGCTTGGAT
* * *
193351111 GTGCGGGAGCCTCGGACACCATTGGCCAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* * * * *
193351154 CTGCGGGAGCCTCGGGCACCATCGACACTTTGGTACCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TC
* * * * * * *
193351197 GTGTGGGAGCCTCGGTCAGCACCGACAACCTAGACCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * *
193351240 ATGTGGGAGCCTCGGGCACCATCAGCAACCTAGGCCC-TAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * *
193351282 GTGCGAGAGCCTC-GGTACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* *
193351324 GTGCGAGAGCCTC-GGTACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* *
193351366 GTGCGGGAGCCTCGGGAATCATCGGCACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * * * *
193351408 GTGCGAGAGTCTCGGG-ACTATAGGCAGCTAGGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* *
193351449 GTGCGAGG-GCCTCGGG-ACTATCAGCACCTAGGCCCTTGGTC
1 GTGCG-GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * * *
193351490 GTGCGAGAGCTTCGAG-ACTATCAGCACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * * * * * * *
193351531 G-GCACCTTGGTGCTTGGATGTGCGGGAGCC-TCGGACACCATCGGCAACCTAGGC
1 GTG---C-GGGAGCCTCG--G-GC---A-CCATCGG-CACC-TAGGC-CCTTGGTC
** * *
193351585 -T-CTTG-G--TCGTGCGAAAGCC-TCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCG-G-G-CA-CCATC----------GGC-ACCTAGGCCCTTGGTC
* * * *
193351636 GTGCGGGAGCCTCGGGTACCATTGGCAACCTAGG-CCTCGATC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * **
193351678 GTGCGAGAACCTCGGG---CA----CACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* * * *
193351713 GTGCGGGAGGCTCGGACACTATCGGCAACCTAGGCCCTTGGTA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * *
193351756 GTGCGGGAGTCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TC
* * * *
193351799 GTAC-GGCGCCTCGAGCACCATCGG-A---A---CCTAGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * *
193351833 GTGCGAGAGCCTC-GGTACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
193351875 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * * * * * *
193351917 CTGCGGGAGCCGCGGG-TCTATCGACACCAAGGTCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * *
193351958 GTGCGAGAGCCTC-GG-ACTATCGGCACCTCGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * **
193351998 GTACGGGAGCCTCGGCCACCATCGGCACCTTGGAGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* * * *
193352040 GTGCTGGAGCCCCGGACACCTTCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * ** *
193352083 GTGCGGGAGCCTCGAGAACCATCAGTAAGCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTGGTC
* * * * * *
193352126 ATGTGAGAGCC-C-CGTACCATCGGCAACCTAGGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
*
193352167 GTGCGGGAGCCTCGGGCACCATCGGTACCTA-GCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* ** *
193352208 GTGCGGAAGCCTCGAACGCCATC-GCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * *
193352250 GTG-AGGAGCCTCGGGCATCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * * * *
193352292 GGGCGAGAACCTC-GGTACCATCGGCAACCTTGG-CCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * **
193352333 GTGCGGGAACCTC--G----AGC-GCACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* *
193352368 GTGCGGGAGCCTCGGACACCATCGGCCAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* * *
193352411 GTGCAGGAGCCTCGGGCACCATCGACACCTTGGTACCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGG--CCCTTGG-TC
* * *
193352455 GTGCGGGAGCCTCGGTCACCACCGACAACCTAGG-CCTTGGT-
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * ** *
193352496 TTGTGGGTTCCTCGGGTACCATCGGCAACCTAAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCT-AGGCCCTTGGTC
* * *
193352539 GTGCGAGAGCCTC-GGTACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * ** *
193352581 GTGC-AGAGCCTC-GGTACCATTAGCAACCTACGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * *
193352622 GTAC-GGTGCCTCGAGCACCATCGGCACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* *
193352663 GTGCGGGAGCCTCGAG-ACTATCGGCACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* ** **
193352704 GTGCGAGAGCCTCGGG-AGTATCAACACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * ** *
193352745 GTACGGGAGCCTCGGGCCACCATCGGCACCTTGGTGCTTGAAT-
1 GTGCGGGAGCCTCGGG-CACCATCGGCACCTAGGCCCTTG-GTC
* * * *
193352788 GTGCAGGAGCCTCGGACACCATC-GCAACCTAGGCCCTCGATC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * * *
193352830 GTGTGGGAACCTCGTGCACCAATCAGCAACCTAGGCCC-TAGTC
1 GTGCGGGAGCCTCGGGCACC-ATCGGC-ACCTAGGCCCTTGGTC
* * * * *
193352873 GTGTGGGAGCCTC-GGTACCATTGGCAACCTAGG-CCGTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * ** *
193352914 GTGCGAGAACCTCGGG---CA----CACCTTGGTGCTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTT-GGTC
* * * *
193352949 GTGC-GGTGCCTCGGACACCATCGGCAACCTGGGCCCTTGGTA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * **
193352991 GTGCGGGAGTCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* * *
193353033 GTGCGAGAGCCTC-GGTACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* *
193353075 GTTC-GGAGCCTCGTGCACCATCGGCACCTAGG-CCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * *
193353115 ATGCGGGAGCCGCGGG-TCTATCGGCACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* *
193353156 GTGCGGGAGCCTCGGGAATCATCGGCACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * * * *
193353197 GAGCGAGAGTCTCGGG-ACTATAGGCAGCTAGG-CCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * *
193353237 GTGCGAGG-GCCTCGGG-ACTATCAGCACCTAGACCCTTGGTC
1 GTGCG-GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * *
193353278 GTGCGAGTGCCTCGGG-ACTATCAGCACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* *** * * *
193353319 G-GC---A-CCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGG-C
1 GTGCGGGAGCCTCGG-GC-ACCA--T-CGGCA-CCTAGG-C-CC-TTGGTC
*** * * * * * *
193353364 AACCTAGGA-CCT-TGG--TCATGCGGAAGCCTCGGGCACC---ATC
1 GTGC-GGGAGCCTCGGGCACCAT-CGGCA-CCT-AGGC-CCTTGGTC
* * * * * *
193353404 G-GC---AACCT-AGGCCCCTAGTCGTGCGGGAGCCTCGGGTACCATTGGCAAC
1 GTGCGGGAGCCTCGGGCACC-A-TCG-GC---A-CCT-AGG--CCCTTGG--TC
* ** * * * * * **
193353453 CTAGGCCTCGATCGTGCGAGAACC-TCGGGCACACCTTGGTGCTTGGAT-
1 GT--G-CGGGAGCCT-CGGGCACCATC-GG--CACCTAGGCCCTTGG-TC
* * *
193353501 GTGCGGGAGGCTCGGACACCATCGGCAACCTAGGCCCTTGGTA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * *
193353544 GTGCGGGAGTCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TC
* * ** * * *
193353587 GTACGGGCGCCTCGACCACCATCGGTAACCTAGGCCCTTCGTT
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* *
193353630 GTGCGGGAGCCTCGGGCACCATCGGGAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTGGTC
* * **
193353673 GTGCGAGAGCCTC-GGTACCATCTGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTGGTC
**
193353715 GTGTAGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * * * * * *
193353757 CTGCGGGAGCCGCGGG-TCTATCGACACCAAGGTCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * *
193353798 GTGCGAGAGCCTC-GG-ACTATCGGCACCTCGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * * * *
193353838 GTACGGGAGCCTCGGCCACCATCGGCACCTTTGGAGCTTTGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACC-TAGG-CCCTTGGTC
* * * * *
193353881 GTGCTGGAGCCCCGGACACCTTCGGCAACCTAGGCCCTCGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * ** *
193353924 GTGCGGGAGCCTCGAGAACCATCAGTAAGCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTGGTC
* * * *
193353967 GTGC-GAAGCC-CCGGTACCATCGGCAAACCTAGGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC--ACCTAGGCCCTTGGTC
*
193354009 GTGCGGGAGCCTC-GGCACCATCGGTACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * ** * *
193354050 TTGTGGAAGCCTCGAACGCCATCGGCAACCTAGGCCCTTGGGCC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT-GGTC
* * * *
193354094 ATGTGGGAGCCTCGGGCATCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * *
193354137 GTGC-GGAACCTCGGGTACCATCGGCAACCTTGG-CCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * *
193354178 GTGCGGGAACCTC--G-AGCA----CACCTTGTG--CTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAG-GCCCTTGG-TC
* * *
193354212 GTGCGGGAGCCTCAGACACCATCGGCCAACTAGGCCCTT-GTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* * * * *
193354254 GTGCAGGAGCCTTGGGCACCATCGACACCTTGGTACCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TC
193354297 GTGCGGGAGCCTC
1 GTGCGGGAGCCTC
193354310 NNNNNNNNNN
Statistics
Matches: 2417, Mismatches: 520, Indels: 438
0.72 0.15 0.13
Matches are distributed among these distances:
33 1 0.00
34 65 0.03
35 51 0.02
36 18 0.01
37 6 0.00
38 2 0.00
39 15 0.01
40 143 0.06
41 631 0.26
42 657 0.27
43 595 0.25
44 123 0.05
45 21 0.01
46 7 0.00
47 1 0.00
48 3 0.00
49 5 0.00
50 9 0.00
51 9 0.00
52 16 0.01
53 17 0.01
54 7 0.00
55 4 0.00
56 7 0.00
57 1 0.00
58 3 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
Found at i:193351811 original size:120 final size:119
Alignment explanation
Indices: 193351589--193352028 Score: 333
Period size: 120 Copynumber: 3.6 Consensus size: 119
193351579 CTAGGCTCTT
* * * *
193351589 GGTCGTGCGAAAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTA
1 GGTCGTGCGAGAGCCTCGGACA-CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * ** *
193351654 CCATTGGCAACC-TAGGCCTCGATCGTGCGAGAACCTCGGGCACACCTTGG-TGCTT
65 CCATCGGC-ACCTTAGGCCTCGATCGTACGAGAACCTCGAGCAC-CATCGGAACCTA
* * * *
193351709 GGAT-GTGCGGGAGGCTCGGACACTATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGC
1 GG-TCGTGCGAGAGCCTCGGACAC-ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * **
193351773 ACCATCGGCACCTTGGTGCCTTGGAT-GTACG-GCGCCTCGAGCACCATCGGAACCTA
64 ACCATCGGCACCTTAG-GCC-TCGATCGTACGAGAACCTCGAGCACCATCGGAACCTA
*
193351829 GGTCGTGCGAGAGCCTCGGTAC-CATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 GGTCGTGCGAGAGCCTCGG-ACACATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * * * * * * * *
193351893 CCATCGGCACC-TAGGCCCTTGGTCCTGCGGGAGCCGCGGGTCTATCGACACCAAGG-TCTTT
65 CCATCGGCACCTTAGG-CCTCGATCGTACGAGAACCTCGAG-C-A-C--CATC--GGAACCTA
* * * *
193351954 GGTCGTGCGAGAGCCTCGGAC-TATCGGC-ACCTCGGCCCTTGGTCGTACGGGAGCCTCGGCCAC
1 GGTCGTGCGAGAGCCTCGGACACATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
193352017 CATCGGCACCTT
66 CATCGGCACCTT
193352029 GGAGCTTGGA
Statistics
Matches: 259, Mismatches: 42, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
117 4 0.02
118 7 0.03
119 65 0.25
120 91 0.35
121 11 0.04
122 5 0.02
123 42 0.16
124 11 0.04
125 21 0.08
126 2 0.01
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (119 bp):
GGTCGTGCGAGAGCCTCGGACACATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
CATCGGCACCTTAGGCCTCGATCGTACGAGAACCTCGAGCACCATCGGAACCTA
Found at i:193352465 original size:44 final size:42
Alignment explanation
Indices: 193352361--193354309 Score: 278
Period size: 41 Copynumber: 46.5 Consensus size: 42
193352351 CACCTTGGTG
*
193352361 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCCAACTAGGCC
1 CTTGGATGTGCGGGAGCCTCGGACACCATC-GACAACTAGGCC
* * * *
193352404 CTTGG-TCGTGCAGGAGCCTCGGGCACCATCGACACCTTGGTACC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGG--CC
* *
193352448 CTTGGATGTGCGGGAGCCTCGGTCACCACCGACAACCTAGG-C
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * ** ** *
193352490 CTTGG-TTTGTGGGTTCCTCGGGTACCATCGGCAACCTAAGGCC
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGACAA-CT-AGGCC
* * *
193352533 C-TGG-TCGTGCGAGAGCCTCGG-TACCATCGGCAACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * * * *
193352574 CCTGG-TCGTGC-AGAGCCTCGG-TACCAT-TAGCAACCTACGCC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGA-CAA-CTAGGCC
* * * *
193352615 CTTGG-TCGTAC-GGTGCCTC-GAGCACCATCGGCACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGA-CACCATCGACAACTAGGCC
* * * * *
193352656 CTTGGTTGTGCGGGAGCCTC-GAGACTATCGGCACCTAGGCC
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
* * ** * *
193352697 CTTGG-TCGTGCGAGAGCCTCGG-GAGTATCAACACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
* * * * * **
193352738 CTTGG-TCGTACGGGAGCCTCGGGCCACCATCGGCACCTTGGTG
1 CTTGGAT-GTGCGGGAGCCTC-GGACACCATCGACAACTAGGCC
* *
193352781 CTTGAATGTGCAGGAGCCTCGGACACCATCG-CAACCTAGGCC
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * *
193352823 C-TCGATCGTGTGGGAACCTCGTG-CACCAATC-AGCAACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCG-GACACC-ATCGA-CAA-CTAGGCC
* * * * *
193352867 C-TAG-TCGTGTGGGAGCCTCGG-TACCATTGGCAACCTAGG-C
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * * * * **
193352907 CGT-GATCGTGCGAGAACCTCGG---GCA-C-AC--CTTGGTG
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
* * * *
193352942 CTTAGATGTGC-GGTGCCTCGGACACCATCGGCAACCTGGGCC
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * * * * **
193352984 CTTGG-TAGTGCGGGAGTCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
* * **
193353026 CTTGGATGTGCGAGAGCCTCGG-TACCATCGGTAACCTAGGCC
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * *
193353068 CTTGG-TCGTTC-GGAGCCTCGTG-CACCATCGGCACCTAGG-C
1 CTTGGAT-GTGCGGGAGCCTCG-GACACCATCGACAACTAGGCC
* * ** * * *
193353108 CTTGG-TCATGCGGGAGCCGCGG-GTCTATCGGCACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
* * *
193353149 CTTGG-TCGTGCGGGAGCCTCGGGA-ATCATCGGCACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTC-GGACACCATCGACAACTAGGCC
* * * * * * * *
193353191 C-TGG-TCGAGCGAGAGTCTCGG-GACTATAGGCAGCTAGG-C
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
* * * *
193353230 CTTGG-TCGTGCGAGG-GCCTCGG-GACTATC-AGCACCTAGACC
1 CTTGGAT-GTGCG-GGAGCCTCGGACACCATCGA-CAACTAGGCC
* * * * *
193353271 CTTGG-TCGTGCGAGTGCCTCGG-GACTATC-AGCACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGA-CAACTAGGCC
* * * *
193353312 CTTGGTCGGCACCTTGGTGCTTGGATG--TGCGGGA-GCC-TCGGACACCATCGGCAAC
1 C-T--T-GG-A---T-GTGC-GGGA-GCCT-C-GGACACCATC-GACAAC-TAGGC--C
* * * *
193353367 CTAGGACCTTGGTCATGCGGAAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGA---T-G---TGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * ** * *
193353417 CCTAG-TCGTGCGGGAGCCTCGGGTACCATTGGCAACCTAGG-C
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * * * * **
193353459 C-TCGATCGTGCGAGAACCTCGG---GCA-C-AC--CTTGGTG
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
* *
193353494 CTTGGATGTGCGGGAGGCTCGGACACCATCGGCAACCTAGGCC
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * * * * *
193353537 CTTGG-TAGTGCGGGAGTCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGG-CC
* * **
193353580 CTTGGATGTACGGGCGCCTC-GACCACCATCGGTAACCTAGGCC
1 CTTGGATGTGCGGGAGCCTCGGA-CACCATCGACAA-CTAGGCC
* * * **
193353623 CTTCGTTGTGCGGGAGCCTCGGGCACCATCGGGAACCTAGGCC
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * * *
193353666 CCTGG-TCGTGCGAGAGCCTCGG-TACCATCTGTA-ACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATC-G-ACAACTAGGCC
** * * *
193353708 CTTGG-TCGTGTAGGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
* * ** * * * *
193353750 CTTGG-TCCTGCGGGAGCCGCGG-GTCTATCGACACCAAGGTC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
* * * * * *
193353791 TTTGG-TCGTGCGAGAGCCTCGG--ACTATCGGCACCTCGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
* * * * * **
193353831 CTTGG-TCGTACGGGAGCCTCGGCCACCATCGGCACCTTTGGAG
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAAC-TAGGCC
* * * * *
193353874 CTTTGATGTGCTGGAGCCCCGGACACCTTCGGCAACCTAGGCC
1 CTTGGATGTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* *
193353917 CTCGG-TCGTGCGGGAGCCTCGAGA-ACCATCAGTA-AGCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCG-GACACCATC-G-ACAACTAGGCC
* * * *
193353960 CTTGG-TCGTGC-GAAGCCCCGG-TACCATCGGCAAACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGAC-AA-CTAGGCC
* ** *
193354002 CTTAG-TCGTGCGGGAGCCTCGG-CACCATCGGTACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
* * * * * *
193354043 CTTGG-TCTTGTGGAAGCCTCGAACGCCATCGGCAACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * *
193354086 CTTGGGCCATGT--GGGAGCCTCGGGCATCATCGGCAACCTAGGCC
1 CTT-GG--ATGTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * ** * *
193354130 CCTGG-TCGTGC-GGAACCTCGGGTACCATCGGCAACCTTGG-C
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAA-CTAGGCC
* * *
193354171 CTT-GATCGTGCGGGAACCTC-G--AGCA-C-AC--CTTGTG--
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAG-GCC
* *
193354205 CTTGGATGTGCGGGAGCCTCAGACACCATCGGCCAACTAGGCC
1 CTTGGATGTGCGGGAGCCTCGGACACCATC-GACAACTAGGCC
* * * * * *
193354248 CTT-G-TCGTGCAGGAGCCTTGGGCACCATCGACACCTTGGTAC
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGACAACTAGG-CC
193354290 CTTGGATGTGCGGGAGCCTC
1 CTTGGATGTGCGGGAGCCTC
193354310 NNNNNNNNNN
Statistics
Matches: 1465, Mismatches: 296, Indels: 290
0.71 0.14 0.14
Matches are distributed among these distances:
34 34 0.02
35 24 0.02
36 7 0.00
37 8 0.01
38 5 0.00
39 11 0.01
40 109 0.07
41 376 0.26
42 363 0.25
43 366 0.25
44 91 0.06
45 7 0.00
46 3 0.00
47 1 0.00
50 16 0.01
51 9 0.01
52 20 0.01
53 12 0.01
54 1 0.00
55 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (42 bp):
CTTGGATGTGCGGGAGCCTCGGACACCATCGACAACTAGGCC
Found at i:193352635 original size:413 final size:409
Alignment explanation
Indices: 193347349--193352718 Score: 1715
Period size: 413 Copynumber: 12.9 Consensus size: 409
193347339 GTCTTTGGTG
* * *
193347349 GTGCGAGAGCCTCGGGACTATCGGCACCTAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCG
1 GTGCGAGAGCCTC-GGACCATCGGCAACTAGGCCCTTGGTCGTACAGGAGCCTCGGCCACCATCG
** * * ** *
193347414 GTACCTTGGAGCTTGGATGTGCGGGAGCCTCGGACACCTTCGGCAACCTAGGCCCTTGGTCGTGC
65 ACACCTTGGACCTTGGATGTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGGTCGTGC
* * * * * *
193347479 GAGAGCCTCGAGAACTATCAGTAAGCTAGGCCCTTGGTCGTGCGAGAGCCTCGGTACCATCGGCA
130 GGGAGCCTCGAGAACCATCAGCAACCTAGGCCCTTGGTCATGCGAGAGCC-CCGTACCATCGGCA
* * * * * ** * *
193347544 ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGTACCTAGGCCCCTGGTCGTGCGGA
194 ACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATAGCAACCTA-GCCCTTGGTCGTACGGA
* * * * *
193347609 AGCCTCGAACGCCATCGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
258 AGCCTCGAACACCATCGGC-ACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAG-ACTATCGGC-AC
* * * *
193347674 CTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCTTGATCGTGCGGGAA
320 CTAGGCCCCTGGTCGGGCGAGAACCTC-GGTACCATCGGCAACCTTGGCCTTGATCGTGCGGGAA
*
193347739 CCTCGAGCACACCTTGGTGCTTGGAT
384 CCTCGAGCGCACCTTGGTGCTTGGAT
* * * * *
193347765 GTGCGGGAGCCTCGGACACCATTGGCCAACTAGGCCCTTGGTCCTGC-GGAGCCTCGGGCACCAT
1 GTGCGAGAGCCTCGG--ACCATCGG-CAACTAGGCCCTTGGTCGTACAGGAGCCTCGGCCACCAT
* * * * * * **
193347829 CGACACTTTGGTACCTTGGATGTGTGGGAGCCTCGGTCAGCACCGACAACCTAGACCCTTGGTTA
63 CGACACCTTGG-ACCTTGGATGTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGGTCG
* * * * * *
193347894 TGTGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCCTAGTCATGCGAGAGCCTCGGTACCATCG
127 TGCGGGAGCCTCGAGAACCATCAGCAACCTAGGCCCTTGGTCATGCGAGAGCC-CCGTACCATCG
* * * * *
193347959 GTAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTACCATCGGCAACCTAGGCCCTTGGTCGTG
191 GCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCAT-AGCAACCTA-GCCCTTGGTCGTA
* * * ** * *
193348023 CGGGAGCCTCGGGA-ATCATCGGCACCTAGG-CCTTGGTCGTGC-GAGAGTTTCGGGACTATAGG
254 CGGAAGCCTC-GAACACCATCGGCACCTAGGCCCTTGGTCGTGCAG-GAGCCTCGAGACTATCGG
* * * * ** * * * * *
193348085 CAGCTAGGCCCTTAGTCGTGCGAGGGCCTCGGGACTATCAGC-ACCTAGGCCCTTGGTCGTGCGA
317 CACCTAGGCCCCTGGTCGGGCGAGAACCTCGGTACCATCGGCAACCTTGG-CCTTGATCGTGC--
*
193348149 GAGCCTCGAGACTATCAGCACCTAGGCCCTTGGTCGGCACCTTGGTGCTTGGAT
379 G-G----GA-AC-CTC-G-----A--------G-C-GCACCTTGGTGCTTGGAT
* * * *
193348203 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GAAAGCCTCGGGCACCA
1 GTGCGAGAGCCTCGG--ACCATCGGCAA-CTAGGCCCTTGGTCGTACAG-GAGCCTCGGCCACCA
* * * * * ** ** * * *
193348267 TCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGTACCATTGGCAACCTAGG-CCTCGAT
62 TCGAC-ACCTTGGACCTTGGAT-GTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGGT
* * * * ** * * * * *
193348330 CGTGCGAGAACCTCG-G-----GCA-C-ACCTTGGTGCTTGGAT-GTGCGGGAGGCTCGGACACT
125 CGTGCGGGAGCCTCGAGAACCATCAGCAACCTAGGCCCTTGG-TCATGCGAGAGCCCCGTAC-C-
* * * * * * * *
193348386 ATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGCACCATCTGC-ACCTTGGTGCCTTGG
187 ATCGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCAT-AGCAACC-TAG-CCCTTGG
** * * * * *
193348450 AT-GTACGGGCGCCTCG-CCACCATCGGTAACCTAGGCCCTTCGTTGTGCGGGAGCCTCG-GCAC
249 -TCGTACGGAAGCCTCGAACACCATCGG-CACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAG-AC
* * * * * * * * *
193348512 CATCGGGAACCTAGGCCCCTAGTCGTGCGAGAGCCACGGTA-CATCGGTAACCTAGGCCCTTGGT
311 TATC-GGCACCTAGGCCCCTGGTCGGGCGAGAACCTCGGTACCATCGGCAACCTTGG-CCTTGAT
* * * **
193348576 CGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-T
374 CGTGCGGGAACCTC--G----AGC-GCACCTTGGTGCTTGGAT
* * * * * * * * * * * * *
193348618 CCTGCGGGAGCCGCGGGTCTATCGACACCAAGGTCTTTGGTCGTGC-GAGAGCCTCGG-GACTAT
1 -GTGCGAGAGCCTC-GGACCATCGGCAACTAGGCCCTTGGTCGTACAG-GAGCCTCGGCCACCAT
* * * * * * * * * **
193348681 CGGCACCTCGGCCCTTGG-TCGTACGGGAGCCTCGGCCACCATCGGC-ACCTTGGAGCTTGGAT-
63 CGACACCTTGGACCTTGGAT-GTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGG-TC
* * * * * * * * *
193348743 GTGCTGGAGCCCCG-GACACCTTCGGCAACCTAGGCCCTCGGTCGTGCGGGAGCCTCGAGAACCA
126 GTGCGGGAGCCTCGAGA-ACCATCAGCAACCTAGGCCCTTGGTCATGCGAGAGCC-C-CGTACCA
* * * * * * * * *
193348807 TCAGTAAGCTAGGCCCTTGGTCGTGCGAGAGCC-CCGGTACCATCGGCAACCTAGGCCCTTAGTC
188 TCGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCAT-AGCAACCTA-GCCCTTGGTC
* * ** * * *
193348871 GTGCGGGAGCCTCGGGCACCATCGGTACCTAGGCCCTTGGTCGTGC-GGAAGCCTTGA-ACGCCA
251 GTACGGAAGCCTCGAACACCATCGGCACCTAGGCCCTTGGTCGTGCAGG-AGCCTCGAGA--CTA
* * * * * * * * * * *
193348934 TCGGCAACCTAGGCCCTTGGTCGTGAGGGAGCCTCGGGCATCATCGACAACCTAGGCCCTGGTCG
313 TCGGC-ACCTAGGCCCCTGGTCGGGCGAGAACCTC-GGTACCATCGGCAACCTTGGCCTTGATCG
* * *
193348999 TGCGAGAACCTCGGGTACCATCGGCAACCTTGG-CCTT-GAT
376 TGCGGGAACCTC--G----AGC-GC-ACCTTGGTGCTTGGAT
* * * * * ** * * *
193349039 CGTGCGGGAACCTC-GAGCA----CACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATC
1 -GTGCGAGAGCCTCGGACCATCGGCAACTAGGCCCTTGG-TCGTACAGGAGCCTCGGCCACCATC
* * * * * ** ** * * *
193349098 GGCCAACTAGG-CCCTGG-TCGTGCGGGAGCCTCGGGTACCATTGGCAACCTAGG-CCTCGATCG
64 -GACACCTTGGACCTTGGAT-GTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGGTCG
* * * * ** * * * * *
193349160 TGCGAGAACCTCG-G-----GCA-C-ACCTTGGTGCTTGGAT-GTGCGGGAGGCTCGGACACTAT
127 TGCGGGAGCCTCGAGAACCATCAGCAACCTAGGCCCTTGG-TCATGCGAGAGCCCCGTAC-C-AT
* * * * * * * *
193349216 CGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT
189 CGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCAT-AGCAACC-TAG-CCCTTGG-T
** * * * * * * *
193349280 -GTACGGGCGCCTCGACCACCATCGGTAACCTAGGCCCTTCGTTGTGCGGGAGCCTCGGGCACCA
250 CGTACGGAAGCCTCGAACACCATCGG-CACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAG-ACTA
* * * * * * * *
193349344 TCGGGAACCTAGGCCCCTAGTCGTGCGAGAGCCACGGTACCATC-GTAACCTAGGCCCTTGGTCG
313 TC-GGCACCTAGGCCCCTGGTCGGGCGAGAACCTCGGTACCATCGGCAACCTTGG-CCTTGATCG
* *
193349408 TGCGGGAGCCTCG-G-GCACCATCGGCACCTAGGCCTTGG-T
376 TGCGGGAACCTCGAGCGCACC-TTGG----T--G-CTTGGAT
* * * * * ** * * * * * * *
193349447 CCTGCGTGAGCCGCGGGTCTATCAACACCAAGGTCTTTGGTCGTGC-GAGAGCCTCGG-GACTAT
1 -GTGCGAGAGCCTC-GGACCATCGGCAACTAGGCCCTTGGTCGTACAG-GAGCCTCGGCCACCAT
* * * * * * * * * * **
193349510 CGGCACCTCGGCCCTTGGTTGTACGGGAGCCTCGGCCACCATCGGC-ACCTTGGAGCTTGGAT-G
63 CGACACCTTGGACCTTGGATGTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGG-TCG
* * * * * * *
193349573 TGCTGGAGCCCCG-GACACCTTCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGAGAACCAT
127 TGCGGGAGCCTCGAGA-ACCATCAGCAACCTAGGCCCTTGGTCATGCGAGAGCC-C-CGTACCAT
* * * * * * * * * *
193349636 CAGTAAGCTAGGCCCTTGGTCATGCGAGAGCC-CCGGTACCATCGGCAACCTAGGCCCTTAGTCG
189 CGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCAT-AGCAACCTA-GCCCTTGGTCG
* * ** * *
193349700 TGCGGGAGCCTCGGGCACCATCGGTACCTAGGCCCTTGGTCGTGC-GGAAGCCTCGA-ACGCCAT
252 TACGGAAGCCTCGAACACCATCGGCACCTAGGCCCTTGGTCGTGCAGG-AGCCTCGAGA--CTAT
* * * * * * * * * *
193349763 CGGCAACCTAGGCCCTTGGTCGTGAGGGAGCCTCGGGCATCATCGGCAACCTAGGCCCCTGGTCG
314 CGGC-ACCTAGGCCCCTGGTCGGGCGAGAACCTC-GGTACCATCGGCAACCTTGG-CCTTGATCG
* * *
193349828 TGCGAGAACCTCGGGTACCATCGGCAACCTTGG-CCTT-GAT
376 TGCGGGAACCTC--G----AGC-GC-ACCTTGGTGCTTGGAT
* * * * ** * * *
193349868 CGTGCGGGAACCTC-GAGCA----C-ACTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATC
1 -GTGCGAGAGCCTCGGACCATCGGCAACTAGGCCCTTGG-TCGTACAGGAGCCTCGGCCACCATC
* * * * * * * * * *
193349926 GGCCAACTAGGCCCTTGG-TCGTGCAGGAGCCTCGGGCACCATCGAC-ACCTTGGTACCTTGGAT
64 -GACACCTTGGACCTTGGAT-GTGCGGGAGCCCCGGACACCACCGACAACCTAGG-CCCTTGG-T
* ** * * ** * *
193349989 -GTGCGGGAGCCTCG-GTCAA-CA-CCGACAA-CTAGGCCCTTGGTTGTGTGGGTTCCTCGGGCA
125 CGTGCGGGAGCCTCGAG--AACCATCAG-CAACCTAGGCCCTTGGTCATGCGAGAGCC-C-CGTA
* * * *
193350049 CCATCGGCAACCTAAGG-CCCTGGTCGTGCGAGAGCCTC-GGTACCATTGGCAACCTAGGCCCCT
185 CCATCGGCAACCT-AGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCA-TAGCAACCTA-GCCCTT
* * ** ** * * * *
193350112 GGTCGTGC-AAGAGCCTCG-GTACCATTAGCAACCTACGCCCTTGGTCGTACGGGTGCCTCGAGC
247 GGTCGTACGGA-AGCCTCGAACACCATCGGC-ACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAG-
* * * * * * * *
193350175 ACCATCGGCACCTAGGCCCTTGGTTGTGCGGGAGCCTCGAG-ACTATCGGC-ACCTAGGCCCTTG
309 ACTATCGGCACCTAGGCCCCTGGTCGGGCGAGAACCTCG-GTACCATCGGCAACCTTGG-CCTTG
* * * * * * **
193350238 GTCGTGCGAGAGCCTCGGGACTATCAACACCTAGGCCCTTGG-T
372 ATCGTGCGGGAACCTC--G---AGC-GCACCTTGGTGCTTGGAT
* * * * ** * * * *
193350281 CGTACGGGAGCCTCGGCCACCATC-GCACCTTGGTGCTTGAAT-GTGCGGGAGCCTCGGACACCA
1 -GTGCGAGAGCCTCGG--ACCATCGGCAACTAGGCCCTTG-GTCGTACAGGAGCCTCGGCCACCA
* ** * * * * * *
193350344 TCGGCAACCTAAG-CCCTCGATCGTGCGGGAACCTCGTG-CACCATC-AGCAACCTAGGCCC-TA
62 TCGAC-ACCTTGGACCTTGGAT-GTGCGGGAGCCCCG-GACACCACCGA-CAACCTAGGCCCTTG
* * ** * * * *
193350405 GTCGTGCGGGAGCCTCGGGTACCATTGGCAACCTAGG-CCGTGATCGTGCGTGA-------ACC-
123 GTCGTGCGGGAGCCTCGAGAACCATCAGCAACCTAGGCCCTTGGTCATGCGAGAGCCCCGTACCA
* ** * * * * * *
193350461 TCGGGCACACCTTGGTGCTTAGAT-GTGCGGGTGCCTCGGACACCATCGGCAACCTGGGCCCTTG
188 TC-GGCA-ACCTAGGCCCCTAG-TCGTGCGAGAGCCTCGGGCACCAT-AGCAACCT-AGCCCTTG
* * * * ** * **
193350525 GTAGTGCGGGAGTCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGC-GAGAGCCTCG-GTA
248 GTCGTACGGAAGCCTCGAACACCATCGGCACCTAGGCCCTTGG-TCGTGCAG-GAGCCTCGAG-A
* * * ** * * * *
193350587 CCATCGGTAACCTAGGCCCTTGGTCGTTCGGGAGCCTCGTGCACCATCGGC-ACCTAGGCCCTTG
310 CTATCGG-CACCTAGGCCCCTGGTCGGGCGAGAACCTCG-GTACCATCGGCAACCTTGG-CCTTG
* * * * * *
193350651 GTCATGCGGGAGCCGCGGGTCTATCGGCACCTAGGT-CTTTGG-T
372 ATCGTGCGGGA-AC-C---TCGAGC-GCACCTTGGTGC-TTGGAT
* * *
193350694 GGTGCGAGAGCCTCGGGACTATCGGCACCTAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATC
1 -GTGCGAGAGCCTC-GGACCATCGGCAACTAGGCCCTTGGTCGTACAGGAGCCTCGGCCACCATC
** * * ** *
193350759 GGTACCTTGGAGCTTGGATGTGCGGGAGCCTCGGACACCTTCGGCAACCTAGGCCCTTGGTCGTG
64 GACACCTTGGACCTTGGATGTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGGTCGTG
* * * * *
193350824 CGGGAGCCTCGAGAAACTATCAGTAAGCTAGGCCCTTGGTCGTGCGAGAGCCTCGGTACCATCGG
129 CGGGAGCCTCGAG-AACCATCAGCAACCTAGGCCCTTGGTCATGCGAGAGCC-CCGTACCATCGG
* * * * * * ** * *
193350889 CAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACTATCGGTACCTAGGCCCCTGGTCGTGCG
192 CAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATAGCAACCTA-GCCCTTGGTCGTACG
* * * * * *
193350954 GAAGCCTCGAACGCCATTGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
256 GAAGCCTCGAACACCATCGGC-ACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAG-ACTATCGGC-
* * * * *
193351019 ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGTACCATCGGTAACCTAGGCCTTGATCGTGCGGGA
318 ACCTAGGCCCCTGGTCGGGCGAGAACCTCGGTACCATCGGCAACCTTGGCCTTGATCGTGCGGGA
*
193351084 ACCTCGAGCACACCTTGGTGCTTGGAT
383 ACCTCGAGCGCACCTTGGTGCTTGGAT
* * * * * *
193351111 GTGCGGGAGCCTCGGACACCATTGGCCAACTAGGCCCTTGGTCCTGCGGGAGCCTCGGGCACCAT
1 GTGCGAGAGCCTCGG--ACCATCGG-CAACTAGGCCCTTGGTCGTACAGGAGCCTCGGCCACCAT
* * * * * * **
193351176 CGACACTTTGGTACCTTGGATGTGTGGGAGCCTCGGTCAGCACCGACAACCTAGACCCTTGGTTA
63 CGACACCTTGG-ACCTTGGATGTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGGTCG
* * * * * *
193351241 TGTGGGAGCCTCGGGCACCATCAGCAACCTAGGCCC-TAGTCGTGCGAGAGCCTCGGTACCATCG
127 TGCGGGAGCCTCGAGAACCATCAGCAACCTAGGCCCTTGGTCATGCGAGAGCC-CCGTACCATCG
* * * * *
193351305 GTAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGTACCATCGGCAACCTAGGCCCTTGGTCGTG
191 GCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCAT-AGCAACCTA-GCCCTTGGTCGTA
* * * * * *
193351369 CGGGAGCCTCGGGA-ATCATCGGCACCTAGGCCCTTGGTCGTGC-GAGAGTCTCGGGACTATAGG
254 CGGAAGCCTC-GAACACCATCGGCACCTAGGCCCTTGGTCGTGCAG-GAGCCTCGAGACTATCGG
* * * * ** * * * * *
193351432 CAGCTAGGCCCTTAGTCGTGCGAGGGCCTCGGGACTATCAGC-ACCTAGGCCCTTGGTCGTGCGA
317 CACCTAGGCCCCTGGTCGGGCGAGAACCTCGGTACCATCGGCAACCTTGG-CCTTGATCGTGC--
*
193351496 GAGCTTCGAGACTATCAGCACCTAGGCCCTTGGTCGGCACCTTGGTGCTTGGAT
379 G-G----GA-AC-CTC-G-----A--------G-C-GCACCTTGGTGCTTGGAT
* * * * *
193351550 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCTCTTGGTCGTGC-GAAAGCCTCGGGCACCA
1 GTGCGAGAGCCTCGG--ACCATCGGCAA-CTAGGCCCTTGGTCGTACAG-GAGCCTCGGCCACCA
* * * * * ** ** * * *
193351614 TCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGTACCATTGGCAACCTAGG-CCTCGAT
62 TCGAC-ACCTTGGACCTTGGAT-GTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGGT
* * * * ** * * * * *
193351677 CGTGCGAGAACCTCG-G-----GCA-C-ACCTTGGTGCTTGGAT-GTGCGGGAGGCTCGGACACT
125 CGTGCGGGAGCCTCGAGAACCATCAGCAACCTAGGCCCTTGG-TCATGCGAGAGCCCCGTAC-C-
* * * * * * * *
193351733 ATCGGCAACCTAGGCCCTTGGTAGTGCGGGAGTCTCGGGCACCATCGGC-ACCTTGGTGCCTTGG
187 ATCGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCAT-AGCAACC-TAG-CCCTTGG
* * *
193351797 AT-GTACGG-CGCCTCGAGCACCATCGG-A---A---CCTAGGTCGTGC-GAGAGCCTCG-GTAC
249 -TCGTACGGAAGCCTCGAACACCATCGGCACCTAGGCCCTTGGTCGTGCAG-GAGCCTCGAG-AC
* * * * * * * * *
193351851 CATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG
311 TATCGG-CACCTAGGCCCCTGGTCGGGCGAGAACCTC-GGTACCATCGGCAACCTTGG-CCTTGA
* * * * **
193351915 TCCTGCGGGAGCCGCGGGTCTATCGACACCAAGGT-CTTTGG-T
373 TCGTGCGGGA-AC-C---TCGAGCG-CACCTTGGTGC-TTGGAT
* * * *
193351957 CGTGCGAGAGCCTCGGACTATCGGCACCTCGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCG
1 -GTGCGAGAGCCTCGGACCATCGGCAACTAGGCCCTTGGTCGTACAGGAGCCTCGGCCACCATCG
* * * ** *
193352022 GCACCTTGGAGCTTGGATGTGCTGGAGCCCCGGACACCTTCGGCAACCTAGGCCCTTGGTCGTGC
65 ACACCTTGGACCTTGGATGTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGGTCGTGC
* * *
193352087 GGGAGCCTCGAGAACCATCAGTAAGCTAGGCCCTTGGTCATGTGAGAGCCCCGTACCATCGGCAA
130 GGGAGCCTCGAGAACCATCAGCAACCTAGGCCCTTGGTCATGCGAGAGCCCCGTACCATCGGCAA
* * * ** *
193352152 CCTAGGCCCTTAGTCGTGCGGGAGCCTCGGGCACCATCGGTACCTAGCCCTTGGTCGTGCGGAAG
195 CCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATAGCAACCTAGCCCTTGGTCGTACGGAAG
* *
193352217 CCTCGAACGCCATC-GCAACCTAGGCCCTTGGTCGTG-AGGAGCCTCG-GGCATCATCGGCAACC
260 CCTCGAACACCATCGGC-ACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAGAC-T-ATCGGC-ACC
193352279 TAGGCCCCTGGTCGGGCGAGAACCTCGGTACCATCGGCAACCTTGGCCTTGATCGTGCGGGAACC
321 TAGGCCCCTGGTCGGGCGAGAACCTCGGTACCATCGGCAACCTTGGCCTTGATCGTGCGGGAACC
193352344 TCGAGCGCACCTTGGTGCTTGGAT
386 TCGAGCGCACCTTGGTGCTTGGAT
* * *
193352368 GTGCGGGAGCCTCGGACACCATCGGCCAACTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCAT
1 GTGCGAGAGCCTCGG--ACCATCGG-CAACTAGGCCCTTGGTCGTACAGGAGCCTCGGCCACCAT
* *
193352433 CGACACCTTGGTACCCTTGGATGTGCGGGAGCCTCGGTCACCACCGACAACCTAGG-CCTTGGT-
63 CGACACCTTGG-A-CCTTGGATGTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGGTC
* * ** * * * * *
193352496 TTGTGGGTTCCTCGGGTACCATCGGCAACCTAAGGCCC-TGGTCGTGCGAGAGCCTCGGTACCAT
126 GTGCGGGAGCCTCGAGAACCATCAGCAACCT-AGGCCCTTGGTCATGCGAGAGCC-CCGTACCAT
* *
193352560 CGGCAACCTAGGCCCCTGGTCGTGC-AGAGCCTC-GGTACCATTAGCAACCTACGCCCTTGGTCG
189 CGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCA-TAGCAACCTA-GCCCTTGGTCG
* * * *
193352623 TACGG-TGCCTCGAGCACCATCGGCACCTAGGCCCTTGGTTGTGCGGGAGCCTCGAGACTATCGG
252 TACGGAAGCCTCGAACACCATCGGCACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAGACTATCGG
* * *
193352687 CACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
317 CACCTAGGCCCCTGGTCGGGCGAGAACCTCGG
193352719 GAGTATCAAC
Statistics
Matches: 3854, Mismatches: 765, Indels: 674
0.73 0.14 0.13
Matches are distributed among these distances:
399 3 0.00
400 5 0.00
404 38 0.01
405 52 0.01
406 14 0.00
407 5 0.00
408 101 0.03
409 81 0.02
410 107 0.03
411 95 0.02
412 244 0.06
413 384 0.10
414 260 0.07
415 124 0.03
416 303 0.08
417 341 0.09
418 313 0.08
419 207 0.05
420 235 0.06
421 128 0.03
422 103 0.03
423 57 0.01
424 5 0.00
425 31 0.01
426 27 0.01
427 30 0.01
428 2 0.00
429 9 0.00
430 31 0.01
431 61 0.02
432 89 0.02
433 48 0.01
434 52 0.01
436 1 0.00
437 7 0.00
438 96 0.02
439 155 0.04
440 10 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (409 bp):
GTGCGAGAGCCTCGGACCATCGGCAACTAGGCCCTTGGTCGTACAGGAGCCTCGGCCACCATCGA
CACCTTGGACCTTGGATGTGCGGGAGCCCCGGACACCACCGACAACCTAGGCCCTTGGTCGTGCG
GGAGCCTCGAGAACCATCAGCAACCTAGGCCCTTGGTCATGCGAGAGCCCCGTACCATCGGCAAC
CTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATAGCAACCTAGCCCTTGGTCGTACGGAAGC
CTCGAACACCATCGGCACCTAGGCCCTTGGTCGTGCAGGAGCCTCGAGACTATCGGCACCTAGGC
CCCTGGTCGGGCGAGAACCTCGGTACCATCGGCAACCTTGGCCTTGATCGTGCGGGAACCTCGAG
CGCACCTTGGTGCTTGGAT
Found at i:193353045 original size:160 final size:160
Alignment explanation
Indices: 193352771--193353067 Score: 361
Period size: 160 Copynumber: 1.9 Consensus size: 160
193352761 CCACCATCGG
* *
193352771 CACCTTGGTGCTTGAATGTGCAGGAGCCTCGGACACCATCGCAACCTAGGCCCTCGATCGTGTGG
1 CACCTTGGTGCTTGAATGTGCAGGAGCCTCGGACACCATCGCAACCTAGGCCCTCGATAGTGCGG
* *
193352836 GAACCTCGTGCACCAATCAGCAACCTAGGCCCTAGTCGTGTGGGAGCCTCGGTACCATTGGCAAC
66 GAACCTCGGGCACCAATCAGCAACCTAGGCCCTA-TCGTGTGGGAGCCTCGGTACCATCGGCAAC
193352901 CTAGGCCGTGATCGTGCGAGAACCTCGGGCA
130 CTAGGCCGTGATCGTGCGAGAACCTCGGGCA
* * * *
193352932 CACCTTGGTGCTT-AGATGTGC-GGTGCCTCGGACACCATCGGCAACCTGGGCCCTTGGTAGTGC
1 CACCTTGGTGCTTGA-ATGTGCAGGAGCCTCGGACACCATC-GCAACCTAGGCCCTCGATAGTGC
** * * ** *
193352995 GGGAGTCTCGGGCACC-ATCGGC-ACCTTGGTGCT-TGGATGTGCGAGAGCCTCGGTACCATCGG
64 GGGAACCTCGGGCACCAATCAGCAACCTAGGCCCTATCG-TGTG-G-GAGCCTCGGTACCATCGG
*
193353057 TAACCTAGGCC
126 CAACCTAGGCC
193353068 CTTGGTCGTT
Statistics
Matches: 115, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
157 2 0.02
158 4 0.03
159 9 0.08
160 50 0.43
161 50 0.43
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (160 bp):
CACCTTGGTGCTTGAATGTGCAGGAGCCTCGGACACCATCGCAACCTAGGCCCTCGATAGTGCGG
GAACCTCGGGCACCAATCAGCAACCTAGGCCCTATCGTGTGGGAGCCTCGGTACCATCGGCAACC
TAGGCCGTGATCGTGCGAGAACCTCGGGCA
Found at i:193353266 original size:122 final size:122
Alignment explanation
Indices: 193353059--193353319 Score: 330
Period size: 122 Copynumber: 2.1 Consensus size: 122
193353049 ACCATCGGTA
** * * * *
193353059 ACCTAGGCCCTTGGTCGTTCG-GAGCCTCGTGCACCATCGGCACCTAGGCCTTGGTCATGCGGGA
1 ACCTAGGCCCTTGGTCGAGCGAGAGTCTCG-GGACTATAGGCACCTAGGCCTTGGTCATGCGGGA
* * * * *
193353123 GCCGCGGGTCTATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGAATCATCGGC
65 GCCGCGGGACTATCAGCACCTAGACCCTTGGTCGTGCGAGAGCCTCGGGAAT-ATCAGC
* *
193353182 ACCTAGGCCC-TGGTCGAGCGAGAGTCTCGGGACTATAGGCAGCTAGGCCTTGGTCGTGCGAGG-
1 ACCTAGGCCCTTGGTCGAGCGAGAGTCTCGGGACTATAGGCACCTAGGCCTTGGTCATGCG-GGA
* * *
193353245 GCCTCGGGACTATCAGCACCTAGACCCTTGGTCGTGCGAGTGCCTCGGGACTATCAGC
65 GCCGCGGGACTATCAGCACCTAGACCCTTGGTCGTGCGAGAGCCTCGGGAATATCAGC
193353303 ACCTAGGCCCTTGGTCG
1 ACCTAGGCCCTTGGTCG
193353320 GCACCTTGGT
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
121 15 0.13
122 85 0.71
123 19 0.16
ACGTcount: A:0.15, C:0.31, G:0.34, T:0.20
Consensus pattern (122 bp):
ACCTAGGCCCTTGGTCGAGCGAGAGTCTCGGGACTATAGGCACCTAGGCCTTGGTCATGCGGGAG
CCGCGGGACTATCAGCACCTAGACCCTTGGTCGTGCGAGAGCCTCGGGAATATCAGC
Found at i:193353284 original size:81 final size:80
Alignment explanation
Indices: 193352505--193353319 Score: 383
Period size: 82 Copynumber: 9.9 Consensus size: 80
193352495 TTTGTGGGTT
* * * *
193352505 CCTCGGGTACCATCGGCAACCTAAGGCCC-TGGTCGTGCGAGAGCCTCGGTACCATCGGCAACCT
1 CCTCGGG-ACTATCGGC-ACCT-A-GCCCTTGGTCGTGCGAGAGCCTCGGGACTATAGGC-ACCT
* * *
193352569 AGGCCCCTGGTCGTGCAGAG
61 AGGCCCTTGGTCGTGCGGGG
* * ** * * * * *
193352589 CCTCGGTACCATTAGCAACCTACGCCCTTGGTCGTACG-GTGCCTCGAGCACCATCGGCACCTAG
1 CCTCGGGACTATCGGC-ACCTA-GCCCTTGGTCGTGCGAGAGCCTCG-GGACTATAGGCACCTAG
*
193352653 GCCCTTGGTTGTGCGGGAG
63 GCCCTTGGTCGTGCGGG-G
* * *
193352672 CCTCGAGACTATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGAGTATCA-ACACCTAGG
1 CCTCGGGACTATCGGCACCTA-GCCCTTGGTCGTGCGAGAGCCTCGGGACTAT-AGGCACCTAGG
*
193352736 CCCTTGGTCGTACGGGAG
64 CCCTTGGTCGTGCGGG-G
* * ** * * * *
193352754 CCTCGGGCCACCATCGGCACCTTGGTGCTTGAAT-GTGC-AGGAGCCTCGGACACCAT-CGCAAC
1 CCTCGGG--ACTATCGGCACC-TAGCCCTTG-GTCGTGCGA-GAGCCTCGG-GACTATAGGC-AC
* * * *
193352816 CTAGGCCCTCGATCGTGTGGGAA
59 CTAGGCCCTTGGTCGTGCGGG-G
* * * * * * * * *
193352839 CCTCGTGCACCAATCAGCAACCTAGGCCC-TAGTCGTGTGGGAGCCTCGGTACCATTGGCAACCT
1 CCTCG-GGA-CTATCGGC-ACCTA-GCCCTTGGTCGTGCGAGAGCCTCGGGACTATAGGC-ACCT
* * **
193352903 AGG-CCGTGATCGTGCGAGAA
61 AGGCCCTTGGTCGTGCG-GGG
* ** * * * * * *
193352923 CCTCGGG-C-A----CACCTTGGTGCTTAGAT-GTGCG-GTGCCTCGGACACCATCGGCAACCTG
1 CCTCGGGACTATCGGCACC-TAGCCCTT-GGTCGTGCGAGAGCCTCGG-GACTATAGGC-ACCTA
*
193352980 GGCCCTTGGTAGTGCGGGAG
62 GGCCCTTGGTCGTGCGGG-G
* * * ** * * * *
193353000 TCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGAGAGCCTCGGTACCATCGGTAACCTA
1 CCTCGGG-ACTATCGGCACC-TAGCCCTTGG-TCGTGCGAGAGCCTCGGGACTATAGG-CACCTA
* *
193353064 GGCCCTTGGTCGTTCGGAG
62 GGCCCTTGGTCGTGCGGGG
* * * * * * * *
193353083 CCTCGTGCACCATCGGCACCTAGGCCTTGGTCATGCGGGAGCCGCGGGTCTATCGGCACCTAGGC
1 CCTCG-GGACTATCGGCACCTAGCCCTTGGTCGTGCGAGAGCCTCGGGACTATAGGCACCTAGGC
193353148 CCTTGGTCGTGCGGGAG
65 CCTTGGTCGTGCGGG-G
* * * *
193353165 CCTCGGGAATCATCGGCACCTAGGCCC-TGGTCGAGCGAGAGTCTCGGGACTATAGGCAGCTAGG
1 CCTCGGGACT-ATCGGCACCTA-GCCCTTGGTCGTGCGAGAGCCTCGGGACTATAGGCACCTAGG
193353229 -CCTTGGTCGTGCGAGGG
64 CCCTTGGTCGTGCG-GGG
* *
193353246 CCTCGGGACTATCAGCACCTAGACCCTTGGTCGTGCGAGTGCCTCGGGACTATCA-GCACCTAGG
1 CCTCGGGACTATCGGCACCTAG-CCCTTGGTCGTGCGAGAGCCTCGGGACTAT-AGGCACCTAGG
193353310 CCCTTGGTCG
64 CCCTTGGTCG
193353320 GCACCTTGGT
Statistics
Matches: 570, Mismatches: 114, Indels: 96
0.73 0.15 0.12
Matches are distributed among these distances:
75 13 0.02
76 23 0.04
77 17 0.03
79 2 0.00
80 15 0.03
81 79 0.14
82 167 0.29
83 73 0.13
84 106 0.19
85 69 0.12
86 6 0.01
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.20
Consensus pattern (80 bp):
CCTCGGGACTATCGGCACCTAGCCCTTGGTCGTGCGAGAGCCTCGGGACTATAGGCACCTAGGCC
CTTGGTCGTGCGGGG
Found at i:193353619 original size:163 final size:164
Alignment explanation
Indices: 193353321--193353648 Score: 423
Period size: 163 Copynumber: 2.0 Consensus size: 164
193353311 CCTTGGTCGG
193353321 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCATGCG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCATGCG
* *** *
193353386 GAAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTCGTGCGGGAGCCTCGGGTACCATTGGCA
66 GAAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTCGTACGGGAGCCTCGACCACCATCGGCA
193353451 ACCTAGG-CC-TCGATCGTGCGAGAACCTCGGGCA
131 ACCTAGGCCCTTCG-TCGTGCGAGAACCTCGGGCA
* *
193353484 CACCTTGGTGCTTGGATGTGCGGGAGGCTCGGACACCATCGGCAACCTAGGCCCTTGGT-AGTGC
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCA-TGC
* * * * * * *
193353548 GGGAGTCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTACGGGCGCCTCGACCACCATCG
65 GGAAGCCTCGGGCACCATCGGCAACCTAGG-CCCCTAG-TCGTACGGGAGCCTCGACCACCATCG
* * * *
193353611 GTAACCTAGGCCCTTCGTTGTGCGGGAGCCTCGGGCA
128 GCAACCTAGGCCCTTCGTCGTGCGAGAACCTCGGGCA
193353648 C
1 C
193353649 CATCGGGAAC
Statistics
Matches: 142, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
162 7 0.05
163 111 0.78
164 21 0.15
165 3 0.02
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.19
Consensus pattern (164 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCATGCG
GAAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTCGTACGGGAGCCTCGACCACCATCGGCA
ACCTAGGCCCTTCGTCGTGCGAGAACCTCGGGCA
Found at i:193361213 original size:40 final size:39
Alignment explanation
Indices: 193361168--193361297 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
193361158 CGGAATATAA
193361168 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
193361208 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
193361248 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
193361288 CCGGATATAA
1 CCGGATATAA
193361298 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:193361312 original size:40 final size:40
Alignment explanation
Indices: 193361184--193361335 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
193361174 ATAACCATGT
* * *
193361184 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
193361224 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
193361264 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
193361304 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
193361336 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:193361318 original size:80 final size:80
Alignment explanation
Indices: 193361184--193361333 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
193361174 ATAACCATGT
*
193361184 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
193361248 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
193361264 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
193361327 CCCGGAT
64 CCCGGAT
193361334 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:193363029 original size:15 final size:15
Alignment explanation
Indices: 193363009--193363039 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
193362999 GGGCTGTCAC
193363009 ATGAAAAGAATATCT
1 ATGAAAAGAATATCT
193363024 ATGAAAAGAATATCT
1 ATGAAAAGAATATCT
193363039 A
1 A
193363040 CACTGGCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26
Consensus pattern (15 bp):
ATGAAAAGAATATCT
Found at i:193394734 original size:39 final size:39
Alignment explanation
Indices: 193394653--193394818 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 39
193394643 AAATTGAATG
* *
193394653 ATATCCGGGCTAAG-CCCGAAGACAATTATGC--TGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGG---TT
* *
193394692 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
**
193394731 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTGGTT
* * *
193394771 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-GTGGTT
193394811 ATATCCGG
1 ATATCCGG
193394819 TTATATTCCG
Statistics
Matches: 106, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.40
40 56 0.53
41 2 0.02
42 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGGTT
Found at i:193396285 original size:24 final size:24
Alignment explanation
Indices: 193396258--193396311 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
193396248 TCCCTGTCTA
*
193396258 AGAGTAAATTTTTCGTAATTAAGC
1 AGAGTAAATTTGTCGTAATTAAGC
*
193396282 AGAGTTGAATTTGTCGTAATTAAGC
1 AGAG-TAAATTTGTCGTAATTAAGC
*
193396307 GGAGT
1 AGAGT
193396312 TGATTGCACG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (24 bp):
AGAGTAAATTTGTCGTAATTAAGC
Found at i:193396293 original size:25 final size:25
Alignment explanation
Indices: 193396264--193396314 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
193396254 TCTAAGAGTA
*
193396264 AATTTTTCGTAATTAAGCAGAGTTG
1 AATTTGTCGTAATTAAGCAGAGTTG
*
193396289 AATTTGTCGTAATTAAGCGGAGTTG
1 AATTTGTCGTAATTAAGCAGAGTTG
193396314 A
1 A
193396315 TTGCACGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (25 bp):
AATTTGTCGTAATTAAGCAGAGTTG
Found at i:193410281 original size:48 final size:48
Alignment explanation
Indices: 193410225--193410351 Score: 146
Period size: 48 Copynumber: 2.6 Consensus size: 48
193410215 GGTAGAGTGT
* * * **
193410225 CGATGCCATGTCCCAAACATAGTCTTACACTAGCTCTCGTCTCAATAC
1 CGATGCCATATCCCAAACATGGTCTTACACTAGCTCTCATAACAATAC
** * **
193410273 CGATGCCATATCCCTGACATGGTCTTACACTAGCTCTCATAACATTGT
1 CGATGCCATATCCCAAACATGGTCTTACACTAGCTCTCATAACAATAC
* *
193410321 CGATGCCATTTTCCAAACATGGTCTTACACT
1 CGATGCCATATCCCAAACATGGTCTTACACT
193410352 GGCACACCAA
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (48 bp):
CGATGCCATATCCCAAACATGGTCTTACACTAGCTCTCATAACAATAC
Found at i:193413150 original size:26 final size:24
Alignment explanation
Indices: 193413072--193413148 Score: 93
Period size: 26 Copynumber: 3.0 Consensus size: 24
193413062 CAAGGTAACA
193413072 TGCCACAAAGGCTTTCAGAGAGAGTT
1 TGCCACAAAGGCTTTCA-A-AGAGTT
*
193413098 AGCCACAAAGGCTTTCTAAATGA-TT
1 TGCCACAAAGGCTTTC-AAA-GAGTT
193413123 TGCCACAAAGGCTTTTCAAAGAGTT
1 TGCCACAAAGGC-TTTCAAAGAGTT
193413148 T
1 T
193413149 TGTGTTTACC
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
24 2 0.04
25 20 0.44
26 22 0.49
27 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (24 bp):
TGCCACAAAGGCTTTCAAAGAGTT
Found at i:193427146 original size:40 final size:40
Alignment explanation
Indices: 193427102--193427211 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
193427092 TTCACAATTT
* *
193427102 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
193427142 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
193427182 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
193427212 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:193434376 original size:17 final size:18
Alignment explanation
Indices: 193434334--193434382 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
193434324 AGTTGAAAAG
193434334 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
193434353 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
193434370 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
193434383 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:193435271 original size:40 final size:40
Alignment explanation
Indices: 193435205--193435371 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
193435195 AAATTGAATG
* * *
193435205 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
193435244 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
193435284 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
193435324 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
193435364 ATATCCGG
1 ATATCCGG
193435372 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:193441756 original size:17 final size:18
Alignment explanation
Indices: 193441714--193441762 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
193441704 AGTTGAAAAG
193441714 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
193441733 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
193441750 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
193441763 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:193442651 original size:40 final size:40
Alignment explanation
Indices: 193442585--193442751 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
193442575 AAATTGAATG
* * *
193442585 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
193442624 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
193442664 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
193442704 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
193442744 ATATCCGG
1 ATATCCGG
193442752 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:193450366 original size:40 final size:40
Alignment explanation
Indices: 193450311--193450474 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
193450301 TTGAATGATA
* * *
193450311 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
193450351 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
193450391 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
193450431 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
193450471 CCGG
1 CCGG
193450475 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:193456723 original size:37 final size:36
Alignment explanation
Indices: 193456690--193456767 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 36
193456680 TCATGTGTAC
193456690 ATTT-TTGAATGCTTT-ATTTAGAGTTATAAATGTGA
1 ATTTCTTG-ATGCTTTAATTTAGAGTTATAAATGTGA
193456725 ATTTCACTTGATGCTTTAATTTAGAGTTATAAATGTGA
1 ATTT--CTTGATGCTTTAATTTAGAGTTATAAATGTGA
193456763 ATTTC
1 ATTTC
193456768 ACTAGAAAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
35 4 0.10
36 1 0.03
37 7 0.18
38 27 0.69
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.47
Consensus pattern (36 bp):
ATTTCTTGATGCTTTAATTTAGAGTTATAAATGTGA
Found at i:193456755 original size:38 final size:37
Alignment explanation
Indices: 193456698--193456770 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 37
193456688 ACATTTTTGA
193456698 ATGCTTTATTTAGAGTTATAAATGTGAATTTCACTTG
1 ATGCTTTATTTAGAGTTATAAATGTGAATTTCACTTG
193456735 ATGCTTTAATTTAGAGTTATAAATGTGAATTTCACT
1 ATGCTTT-ATTTAGAGTTATAAATGTGAATTTCACT
193456771 AGAAAGGACC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 7 0.20
38 28 0.80
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (37 bp):
ATGCTTTATTTAGAGTTATAAATGTGAATTTCACTTG
Found at i:193458466 original size:40 final size:40
Alignment explanation
Indices: 193458385--193458551 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
193458375 CATTTGAATG
* * *
193458385 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTG-TT
*
193458424 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTTGTT
* ***
193458464 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTT
* * * *
193458504 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTT
193458544 ATATCCGG
1 ATATCCGG
193458552 TTAAATCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 16 0.15
40 86 0.80
41 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTT
Found at i:193462242 original size:24 final size:24
Alignment explanation
Indices: 193462192--193462245 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
193462182 AATCGAATTT
*
193462192 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
193462216 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
193462240 GCACAC
1 GCACAC
193462246 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:193470038 original size:24 final size:24
Alignment explanation
Indices: 193469988--193470041 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
193469978 AATCGAATTT
*
193469988 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
193470012 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
193470036 GCACAC
1 GCACAC
193470042 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:193471896 original size:22 final size:23
Alignment explanation
Indices: 193471871--193471916 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
193471861 CAACCAAATC
193471871 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
193471893 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
193471916 A
1 A
193471917 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:193471922 original size:23 final size:23
Alignment explanation
Indices: 193471878--193471922 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
193471868 ATCAATTCAA
*
193471878 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
193471901 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
193471923 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:193479600 original size:22 final size:23
Alignment explanation
Indices: 193479575--193479620 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
193479565 CAACCAAATC
193479575 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
193479597 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
193479620 A
1 A
193479621 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:193479626 original size:23 final size:23
Alignment explanation
Indices: 193479582--193479626 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
193479572 ATCAATTCAA
*
193479582 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
193479605 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
193479627 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:193485982 original size:49 final size:47
Alignment explanation
Indices: 193485759--193486002 Score: 434
Period size: 47 Copynumber: 5.1 Consensus size: 47
193485749 TATTAAAATT
193485759 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
193485806 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
193485853 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
193485900 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
193485947 TGTGAAGGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAG-A-GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
193485996 TGTGAAA
1 TGTGAAA
193486003 CATATGTGTG
Statistics
Matches: 190, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 146 0.77
48 1 0.01
49 43 0.23
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
TGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:193486050 original size:48 final size:48
Alignment explanation
Indices: 193485994--193486193 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
193485984 CGATGTGATG
*
193485994 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
193486042 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
193486090 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
193486138 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
193486186 AATGTGAA
1 AATGTGAA
193486194 TGTTGTAACA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:193486287 original size:37 final size:37
Alignment explanation
Indices: 193486233--193486323 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
193486223 AACTTGGAAA
*
193486233 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
193486271 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
193486308 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
193486324 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:193488277 original size:40 final size:40
Alignment explanation
Indices: 193488231--193488612 Score: 450
Period size: 40 Copynumber: 9.6 Consensus size: 40
193488221 TGAATGATAC
* ** *
193488231 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATGTAT
** * * * *
193488271 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-AG-TGATGTAT
* ** * * *
193488311 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTTCCGAAGAGC-ATTCGTGCTAGT-GATGTAT
* *
193488351 CCGGACTAAGTTCCAAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
193488391 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
193488431 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
193488471 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
*
193488511 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
193488551 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
193488591 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTTCCGAAGAGCA
193488613 ATCATGCTGG
Statistics
Matches: 306, Mismatches: 29, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.01
40 289 0.94
41 15 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:193492362 original size:47 final size:47
Alignment explanation
Indices: 193492268--193492557 Score: 487
Period size: 47 Copynumber: 6.2 Consensus size: 47
193492258 CTTGATATTA
*
193492268 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCC-A-ATGATG
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
193492313 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
193492360 AATGTG-AAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
193492406 AATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
193492453 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
193492500 AATGTGAAGGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAG-A-GTATATATGTGATAAGGCCTAATGGCCGATGTGATG
193492549 AATGTGAAA
1 AATGTGAAA
193492558 CATATGTGTG
Statistics
Matches: 230, Mismatches: 10, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
45 38 0.17
46 47 0.20
47 101 0.44
48 1 0.00
49 43 0.19
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:193492434 original size:93 final size:94
Alignment explanation
Indices: 193492268--193492557 Score: 496
Period size: 93 Copynumber: 3.1 Consensus size: 94
193492258 CTTGATATTA
* * *
193492268 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCC-A-ATGATGAATGTGAAAGAGTATATA
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATA
193492331 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
193492360 AATGTG-AAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATA
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATA
*
193492424 TGTGATAAGGCCTAATGGCCAATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
*
193492453 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTATATATA
1 AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGG--TGTATA
193492518 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
193492549 AATGTGAAA
1 AATGTGAAA
193492558 CATATGTGTG
Statistics
Matches: 187, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
91 31 0.17
92 7 0.04
93 55 0.29
94 50 0.27
96 44 0.24
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:193492568 original size:140 final size:136
Alignment explanation
Indices: 193492281--193492570 Score: 474
Period size: 140 Copynumber: 2.1 Consensus size: 136
193492271 GTGAAAGAGT
193492281 ATATATGTGATAAGGCCTAATGGCCAATGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAA
1 ATATATGTGATAAGGCCTAATGGCCAATGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAA
*
193492346 TGGCCGATGTGATGAATGTGAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
66 TGGCCGATGTGATGAATGTGAAGAATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
**
193492411 GAAGGTGT
131 GAA-G-AC
193492419 ATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCAA--TGATGAATGTGAAAGAGTATATATGTGATAAGGCCT
193492484 AATGGCCGATGTGATGAATGTGAAGGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
64 AATGGCCGATGTGATGAATGTGAA-G-A-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
193492549 AATGTGAA-AC
126 AATGTGAAGAC
*
193492559 ATATGTGTGATA
1 ATATATGTGATA
193492571 TGTATATGTG
Statistics
Matches: 143, Mismatches: 4, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
138 27 0.19
140 71 0.50
141 1 0.01
142 1 0.01
143 43 0.30
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (136 bp):
ATATATGTGATAAGGCCTAATGGCCAATGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAAGAATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAGAC
Found at i:193492605 original size:48 final size:48
Alignment explanation
Indices: 193492549--193492748 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
193492539 CGATGTGATG
*
193492549 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
193492597 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
193492645 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
193492693 AATGTGAAATATATGTGTGATGTGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
193492741 AATGTGAA
1 AATGTGAA
193492749 TGTTGTAACA
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:193502470 original size:46 final size:46
Alignment explanation
Indices: 193502420--193502592 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
193502410 TGGTTGAGCA
193502420 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
193502466 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
193502511 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
193502559 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
193502593 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:193502576 original size:93 final size:93
Alignment explanation
Indices: 193502417--193502587 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
193502407 GGATGGTTGA
* *
193502417 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
193502482 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
193502510 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
193502575 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
193502588 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:193503492 original size:20 final size:20
Alignment explanation
Indices: 193503455--193503497 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
193503445 CTATTCTGAC
* *
193503455 TTTAAAAATTCATAATAAAT
1 TTTAAAAAATAATAATAAAT
* *
193503475 TTTAAAAAATAATTATAAGT
1 TTTAAAAAATAATAATAAAT
193503495 TTT
1 TTT
193503498 TTATATGTAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
TTTAAAAAATAATAATAAAT
Found at i:193510457 original size:27 final size:28
Alignment explanation
Indices: 193510401--193510470 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
193510391 AAACTTGTAC
193510401 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
193510429 AGCACTAAGTGTGTGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
193510456 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
193510471 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:193510481 original size:27 final size:27
Alignment explanation
Indices: 193510425--193510482 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
193510415 GAGTTTGATC
* * * *
193510425 ATATAGCACTAAGTGTGTGAGTTGATT
1 ATATAGCACTAAGTGTGGGAGCTCACT
193510452 ATATAGCACTAAGTGTGCGGA-CTCACT
1 ATATAGCACTAAGTGTG-GGAGCTCACT
193510479 ATAT
1 ATAT
193510483 GCTTTTGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGGGAGCTCACT
Found at i:193518479 original size:27 final size:28
Alignment explanation
Indices: 193518423--193518492 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
193518413 AAACTTGTAC
193518423 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
193518451 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
193518478 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
193518493 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:193518503 original size:27 final size:27
Alignment explanation
Indices: 193518423--193518504 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
193518413 AAACTTGTAC
* *
193518423 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
193518451 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
193518478 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
193518505 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:193520657 original size:16 final size:16
Alignment explanation
Indices: 193520619--193520658 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
193520609 GAGCCTAGGG
193520619 GCCAAAGTGTAATTAT
1 GCCAAAGTGTAATTAT
* *
193520635 GCAAAAGTGTAATTTT
1 GCCAAAGTGTAATTAT
*
193520651 TCCAAAGT
1 GCCAAAGT
193520659 TCGTATTAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (16 bp):
GCCAAAGTGTAATTAT
Found at i:193521126 original size:46 final size:46
Alignment explanation
Indices: 193521072--193521234 Score: 163
Period size: 46 Copynumber: 3.5 Consensus size: 46
193521062 TGGTTGAGCA
193521072 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
193521118 TCCAAACTCGTTGAGTTGAGTCTGAGTTCA-TGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
193521163 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACGTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
193521211 CCCGAGCTCGTTGAGTTGAGTCCG
1 TCCGAACTCGTTGAGTTGAGTCCG
193521235 TGTGACAGCC
Statistics
Matches: 92, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 49 0.53
47 27 0.29
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:193522886 original size:40 final size:39
Alignment explanation
Indices: 193522829--193523013 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
193522819 ATTAAATGAT
* * *
193522829 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
193522869 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
193522909 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
193522949 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
193522989 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
193523014 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:193522965 original size:80 final size:80
Alignment explanation
Indices: 193522828--193523034 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
193522818 AATTAAATGA
* * ** * *
193522828 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
193522893 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
193522906 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
193522971 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
193522988 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
193523035 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:193523019 original size:40 final size:39
Alignment explanation
Indices: 193522827--193523034 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
193522817 CAATTAAATG
* * ** *
193522827 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
193522867 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
193522907 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
193522947 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
193522987 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
193523027 ATATCCGG
1 ATATCCGG
193523035 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:193532900 original size:49 final size:47
Alignment explanation
Indices: 193532783--193533099 Score: 433
Period size: 47 Copynumber: 6.7 Consensus size: 47
193532773 GATTTTACGC
* *
193532783 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
193532830 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCT-AATGGCCAATGT
*
193532877 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCAATGT
*
193532926 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCA-ATGT
*
193532975 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATAGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCT-AATGGCCAATGT
* * * * *
193533022 GATGAATGTGAAGGTGTATATATGTGACAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
* * *
193533069 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
193533100 TCCCGAAGGG
Statistics
Matches: 244, Mismatches: 18, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
46 4 0.02
47 143 0.59
48 10 0.04
49 85 0.35
50 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
Found at i:193532907 original size:96 final size:93
Alignment explanation
Indices: 193532783--193533099 Score: 424
Period size: 96 Copynumber: 3.3 Consensus size: 93
193532773 GATTTTACGC
193532783 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
193532848 TATATGTGATAAGGCTGAATGGCCAATGT
65 TATATGTGATAAGGCTGAATGGCCAATGT
193532877 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
*
193532942 TATATATATGTGATAAGGCCT-AATGG-CAGATGT
61 TGTATATATGTGATAAGG-CTGAATGGCCA-ATGT
* *
193532975 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATAGCCAATGTGATGAATGTGAAGGTGT
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAGGTGT
* * * * *
193533039 ATATATGTGACAGGGCCGAGTGGCCAACGT
64 ATATATGTGATAAGGCTGAATGGCCAATGT
* *
193533069 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
193533100 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 12, Indels: 20
0.86 0.05 0.09
Matches are distributed among these distances:
93 1 0.00
94 59 0.29
95 11 0.05
96 84 0.42
97 7 0.03
98 37 0.18
99 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCTGAATGGCCAATGT
Found at i:193535088 original size:42 final size:41
Alignment explanation
Indices: 193535024--193535235 Score: 214
Period size: 40 Copynumber: 5.2 Consensus size: 41
193535014 CTCGACGATG
* * *
193535024 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGCGATATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
* * * * *
193535066 ATCCGGGTTAAGTCCCGTAGAGCATTCGTGCTGGTGT-TAC
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
*
193535106 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATAT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* *
193535146 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTAGTG-ATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
* * ** * * *
193535186 ATCCGGACCAGGTTCCGAAGAGCAGTCATGCTGGTGATATGT
1 ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTG-TATAT
*
193535228 ATTCGGGC
1 ATCCGGGC
193535236 CTTCGTGCCT
Statistics
Matches: 147, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
40 103 0.70
41 1 0.01
42 43 0.29
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTAAATCCCGAAGAGCATTCATGCTGGTGTATAT
Found at i:193535267 original size:43 final size:43
Alignment explanation
Indices: 193535218--193535655 Score: 764
Period size: 43 Copynumber: 10.3 Consensus size: 43
193535208 CAGTCATGCT
193535218 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
*
193535261 AGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
193535304 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
* *
193535347 GGTGATATGTATTCGGTCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
193535390 -GTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
193535432 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
* *
193535475 GGTGATATGTATTCGGTCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
193535518 GGTGATATGTATT-GGGCCTTCGTGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
*
193535560 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
*
193535603 GGTGATATGTATTCGGGCCTTCGAG-CTAGCAGGC-TT-TGCC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
193535643 GGTGAT-TG-ATTCG
1 GGTGATATGTATTCG
193535656 TGTTCATTAC
Statistics
Matches: 382, Mismatches: 11, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
38 5 0.01
39 2 0.01
40 10 0.03
41 2 0.01
42 89 0.23
43 274 0.72
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.32
Consensus pattern (43 bp):
GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
Found at i:193535424 original size:128 final size:129
Alignment explanation
Indices: 193535218--193535640 Score: 780
Period size: 128 Copynumber: 3.3 Consensus size: 129
193535208 CAGTCATGCT
*
193535218 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCAGTGATATGTATTCGGGCCTTC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCCAGTGATATGTATTCGGGCCTTC
193535283 GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
66 GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
*
193535347 GGTGATATGTATTCGGTCCTTCGAGCCTAGCAGGCTTTGTGCC-GTGATATGTATTCGGGCCTTC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCCAGTGATATGTATTCGGGCCTTC
193535411 GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
66 GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
* *
193535475 GGTGATATGTATTCGGTCCTTCGAGCCTAGCAGGCTTTGTGCCGGTGATATGTATT-GGGCCTTC
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCCAGTGATATGTATTCGGGCCTTC
*
193535539 GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
66 GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
193535603 GGTGATATGTATTCGGGCCTTCGAG-CTAGCAGGCTTTG
1 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTG
193535641 CCGGTGATTG
Statistics
Matches: 289, Mismatches: 4, Indels: 4
0.97 0.01 0.01
Matches are distributed among these distances:
127 13 0.04
128 223 0.77
129 53 0.18
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.32
Consensus pattern (129 bp):
GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCCAGTGATATGTATTCGGGCCTTC
GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
Found at i:193535505 original size:171 final size:171
Alignment explanation
Indices: 193535218--193535655 Score: 762
Period size: 171 Copynumber: 2.6 Consensus size: 171
193535208 CAGTCATGCT
*
193535218 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCAGTGATATGTATTCGGGCCTTC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTC
*
193535283 GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCG
66 GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCCG
*
193535348 GTGATATGTATTCGGTCCTTCGAGCCTAGCAGGCTTTGTGCC
131 GTGATATGTATT-GGGCCTTCGAGCCTAGCAGGCTTTGTGCC
193535390 -GTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTC
*
193535454 GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGTCCTTCGAGCCTAGCAGGCTTTGTGCCG
66 GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCCG
*
193535519 GTGATATGTATTGGGCCTTCGTGCCTAGCAGGCTTTGTGCC
131 GTGATATGTATTGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
*
193535560 GGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTC
1 GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTC
*
193535625 GAG-CTAGCAGGC-TT-TGCCGGTGAT-TG-ATTCG
66 GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCG
193535656 TGTTCATTAC
Statistics
Matches: 258, Mismatches: 7, Indels: 8
0.95 0.03 0.03
Matches are distributed among these distances:
166 5 0.02
167 2 0.01
168 10 0.04
169 2 0.01
170 36 0.14
171 203 0.79
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.32
Consensus pattern (171 bp):
GGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTC
GTGCCTAGCAGGCTTTGTGCCGGTGATATGTATTCGGGCCTTCGAGCCTAGCAGGCTTTGTGCCG
GTGATATGTATTGGGCCTTCGAGCCTAGCAGGCTTTGTGCC
Found at i:193539480 original size:49 final size:47
Alignment explanation
Indices: 193539363--193539679 Score: 433
Period size: 47 Copynumber: 6.7 Consensus size: 47
193539353 GATTTTACGC
* *
193539363 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
193539410 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCT-AATGGCCAATGT
*
193539457 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCAATGT
*
193539506 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCTAATGGCCA-ATGT
*
193539555 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATAGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCT-AATGGCCAATGT
* * * * *
193539602 GATGAATGTGAAGGTGTATATATGTGACAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
* * *
193539649 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
193539680 TCCCGAAGGG
Statistics
Matches: 244, Mismatches: 18, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
46 4 0.02
47 143 0.59
48 10 0.04
49 85 0.35
50 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCAATGT
Found at i:193539487 original size:96 final size:93
Alignment explanation
Indices: 193539363--193539679 Score: 424
Period size: 96 Copynumber: 3.3 Consensus size: 93
193539353 GATTTTACGC
193539363 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
193539428 TATATGTGATAAGGCTGAATGGCCAATGT
65 TATATGTGATAAGGCTGAATGGCCAATGT
193539457 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
*
193539522 TATATATATGTGATAAGGCCT-AATGG-CAGATGT
61 TGTATATATGTGATAAGG-CTGAATGGCCA-ATGT
* *
193539555 GATGAATGTGAAGGTGTATATATGTGATAAGG-CTGAATAGCCAATGTGATGAATGTGAAGGTGT
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAGGTGT
* * * * *
193539619 ATATATGTGACAGGGCCGAGTGGCCAACGT
64 ATATATGTGATAAGGCTGAATGGCCAATGT
* *
193539649 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
193539680 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 12, Indels: 20
0.86 0.05 0.09
Matches are distributed among these distances:
93 1 0.00
94 59 0.29
95 11 0.05
96 84 0.42
97 7 0.03
98 37 0.18
99 2 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCTGAATGGCCAATGT
Found at i:193542012 original size:46 final size:45
Alignment explanation
Indices: 193541957--193542081 Score: 187
Period size: 46 Copynumber: 2.7 Consensus size: 45
193541947 GGTTGAGCAT
*
193541957 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
* * *
193542002 TTCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACG
1 -CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
*
193542048 CCCAAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CCGAA-CTCGTTGAGTTGAGTCTGAGTTCACTTA
193542082 GGGGAGGGTT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
45 3 0.04
46 67 0.96
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
Found at i:193547522 original size:46 final size:46
Alignment explanation
Indices: 193547472--193547644 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
193547462 TGGTTGAGCA
193547472 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
193547518 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
193547563 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
193547611 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
193547645 GGGCGGGTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:193547628 original size:93 final size:93
Alignment explanation
Indices: 193547469--193547639 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
193547459 GGATGGTTGA
* *
193547469 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
193547534 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
193547562 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
193547627 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
193547640 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:193553463 original size:17 final size:18
Alignment explanation
Indices: 193553421--193553469 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
193553411 AGTTGAAAAG
193553421 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
193553440 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
193553457 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
193553470 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Done.