Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr14 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 244914714 ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31 Warning! 4503000 characters in sequence are not A, C, G, or T File 618 of 770 Found at i:193554354 original size:40 final size:40 Alignment explanation
Indices: 193554288--193554438 Score: 164 Period size: 40 Copynumber: 3.8 Consensus size: 40 193554278 AAATTGAATG * * * 193554288 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * * *** 193554327 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * 193554367 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT 1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT * * 193554407 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC 193554439 ACTGATTATA Statistics Matches: 93, Mismatches: 15, Indels: 7 0.81 0.13 0.06 Matches are distributed among these distances: 39 16 0.17 40 75 0.81 41 2 0.02 ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT Found at i:193562358 original size:40 final size:40 Alignment explanation
Indices: 193562292--193562458 Score: 169 Period size: 40 Copynumber: 4.2 Consensus size: 40 193562282 AAATTGAATG * * * 193562292 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * * *** 193562331 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * 193562371 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT 1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT * * ** * 193562411 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT 193562451 ATATCCGG 1 ATATCCGG 193562459 TTATATTCCG Statistics Matches: 105, Mismatches: 18, Indels: 9 0.80 0.14 0.07 Matches are distributed among these distances: 39 16 0.15 40 87 0.83 41 2 0.02 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT Found at i:193572040 original size:92 final size:92 Alignment explanation
Indices: 193571883--193572053 Score: 315 Period size: 92 Copynumber: 1.9 Consensus size: 92 193571873 CGCCCATAAG * * 193571883 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA 1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 193571948 ACGAGTTCGGATGCCTAGTTACATTCA 66 ACGAGTTCGGATGCCTAGTTACATTCA * 193571975 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 193572040 ACGAGTTCGGATGC 66 ACGAGTTCGGATGC 193572054 TCAACCATCC Statistics Matches: 76, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 92 76 1.00 ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21 Consensus pattern (92 bp): CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA ACGAGTTCGGATGCCTAGTTACATTCA Found at i:193572050 original size:46 final size:46 Alignment explanation
Indices: 193571876--193572050 Score: 214 Period size: 46 Copynumber: 3.8 Consensus size: 46 193571866 TGTAACCCGC * * * 193571876 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT * * 193571922 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T * * 193571968 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT * 193572014 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA 193572051 TGCTCAACCA Statistics Matches: 110, Mismatches: 11, Indels: 16 0.80 0.08 0.12 Matches are distributed among these distances: 43 1 0.01 44 3 0.03 45 2 0.02 46 97 0.88 47 2 0.02 48 4 0.04 49 1 0.01 ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21 Consensus pattern (46 bp): CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT Found at i:193572069 original size:46 final size:46 Alignment explanation
Indices: 193571884--193572069 Score: 145 Period size: 46 Copynumber: 4.0 Consensus size: 46 193571874 GCCCATAAGC * ** * * 193571884 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAAGT 1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T-AGT * * 193571930 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-A-C 1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCTAGT * * * * 193571976 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT 1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCTAGT 193572022 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT 1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT 193572068 GA 1 GA 193572070 CATGTCACTT Statistics Matches: 113, Mismatches: 13, Indels: 28 0.73 0.08 0.18 Matches are distributed among these distances: 44 9 0.08 45 2 0.02 46 92 0.81 47 1 0.01 48 4 0.04 49 1 0.01 50 4 0.04 ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22 Consensus pattern (46 bp): GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT Found at i:193579413 original size:22 final size:24 Alignment explanation
Indices: 193579385--193579436 Score: 72 Period size: 26 Copynumber: 2.2 Consensus size: 24 193579375 GCTCAACATG 193579385 CTCGGGC-CGC-TCCATAAGTGAA 1 CTCGGGCTCGCATCCATAAGTGAA 193579407 CTCGGGCGTTCGCATCCATAAGTGAA 1 CTCGGGC--TCGCATCCATAAGTGAA 193579433 CTCG 1 CTCG 193579437 ACTCAACTCA Statistics Matches: 26, Mismatches: 0, Indels: 4 0.87 0.00 0.13 Matches are distributed among these distances: 22 7 0.27 25 3 0.12 26 16 0.62 ACGTcount: A:0.21, C:0.31, G:0.27, T:0.21 Consensus pattern (24 bp): CTCGGGCTCGCATCCATAAGTGAA Found at i:193579479 original size:45 final size:46 Alignment explanation
Indices: 193579415--193579503 Score: 171 Period size: 46 Copynumber: 2.0 Consensus size: 46 193579405 AACTCGGGCG 193579415 TTCGCATCCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGACA 1 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACA 193579460 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 193579504 TGCTCAACCA Statistics Matches: 43, Mismatches: 0, Indels: 1 0.98 0.00 0.02 Matches are distributed among these distances: 45 21 0.49 46 22 0.51 ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22 Consensus pattern (46 bp): TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACA Found at i:193579522 original size:46 final size:44 Alignment explanation
Indices: 193579417--193579514 Score: 135 Period size: 46 Copynumber: 2.2 Consensus size: 44 193579407 CTCGGGCGTT * * 193579417 CGCATCCATAAGTGAACTCGACTCAACTCAACGAGTTCGGACATT 1 CGCAACCATAAGTGAACTCGACTCAACTCAACGAGTTCGGA-ATG * 193579462 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATG 1 CGCAACCATAAGTGAACTC-GACTCAACTCAACGAGTTCGGAATG * 193579506 CTCAACCAT 1 CGCAACCAT 193579515 CCTAGTGACA Statistics Matches: 49, Mismatches: 3, Indels: 3 0.89 0.05 0.05 Matches are distributed among these distances: 44 9 0.18 45 19 0.39 46 21 0.43 ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21 Consensus pattern (44 bp): CGCAACCATAAGTGAACTCGACTCAACTCAACGAGTTCGGAATG Found at i:193586984 original size:93 final size:93 Alignment explanation
Indices: 193586872--193587043 Score: 317 Period size: 93 Copynumber: 1.8 Consensus size: 93 193586862 CGCCCATAAG * * 193586872 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA 1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 193586937 ACGAGTTCGGATGCCTAGTTACATCTCA 66 ACGAGTTCGGATGCCTAGTTACATCTCA * 193586965 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 193587030 ACGAGTTCGGATGC 66 ACGAGTTCGGATGC 193587044 TCAACCATCC Statistics Matches: 76, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 76 1.00 ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21 Consensus pattern (93 bp): CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA ACGAGTTCGGATGCCTAGTTACATCTCA Found at i:193587040 original size:46 final size:46 Alignment explanation
Indices: 193586865--193587040 Score: 216 Period size: 46 Copynumber: 3.8 Consensus size: 46 193586855 TGTAACCCGC * * * 193586865 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT * * 193586911 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT * 193586961 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT * 193587004 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA 193587041 TGCTCAACCA Statistics Matches: 111, Mismatches: 10, Indels: 18 0.80 0.07 0.13 Matches are distributed among these distances: 42 2 0.02 43 4 0.04 44 2 0.02 45 2 0.02 46 63 0.57 47 29 0.26 48 2 0.02 49 2 0.02 50 3 0.03 51 2 0.02 ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20 Consensus pattern (46 bp): CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT Found at i:193588740 original size:40 final size:39 Alignment explanation
Indices: 193588695--193588824 Score: 136 Period size: 40 Copynumber: 3.3 Consensus size: 39 193588685 CGGAATATAA 193588695 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC * * * * 193588735 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC * * * * * 193588775 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC 193588815 CCGGATATAA 1 CCGGATATAA 193588825 TTTCCAGCAT Statistics Matches: 72, Mismatches: 14, Indels: 8 0.77 0.15 0.09 Matches are distributed among these distances: 38 1 0.01 40 69 0.96 41 1 0.01 42 1 0.01 ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25 Consensus pattern (39 bp): CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC Found at i:193588839 original size:40 final size:40 Alignment explanation
Indices: 193588711--193588861 Score: 155 Period size: 40 Copynumber: 3.8 Consensus size: 40 193588701 ATAACCATGT * * * 193588711 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC- 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA * ** * * 193588751 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA 1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA * * 193588791 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA * * 193588831 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT 193588862 CATTCAATTT Statistics Matches: 91, Mismatches: 17, Indels: 7 0.79 0.15 0.06 Matches are distributed among these distances: 39 15 0.16 40 74 0.81 41 2 0.02 ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27 Consensus pattern (40 bp): GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA Found at i:193588845 original size:80 final size:79 Alignment explanation
Indices: 193588711--193588859 Score: 203 Period size: 80 Copynumber: 1.9 Consensus size: 79 193588701 ATAACCATGT * 193588711 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC 193588776 CGGATGTAGCCACTA 65 CGGATGTAGCCACTA * * * * * 193588791 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC 193588854 CCGGAT 64 CCGGAT 193588860 ATCATTCAAT Statistics Matches: 61, Mismatches: 6, Indels: 5 0.85 0.08 0.07 Matches are distributed among these distances: 79 15 0.25 80 46 0.75 ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27 Consensus pattern (79 bp): GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC GGATGTAGCCACTA Found at i:193596716 original size:40 final size:39 Alignment explanation
Indices: 193596671--193596800 Score: 136 Period size: 40 Copynumber: 3.3 Consensus size: 39 193596661 CGGAATATAA 193596671 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC * * * * 193596711 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC * * * * * 193596751 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC 193596791 CCGGATATAA 1 CCGGATATAA 193596801 TTTCCAGCAT Statistics Matches: 72, Mismatches: 14, Indels: 8 0.77 0.15 0.09 Matches are distributed among these distances: 38 1 0.01 40 69 0.96 41 1 0.01 42 1 0.01 ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25 Consensus pattern (39 bp): CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC Found at i:193596815 original size:40 final size:40 Alignment explanation
Indices: 193596687--193596837 Score: 146 Period size: 40 Copynumber: 3.8 Consensus size: 40 193596677 ATAACCATGT * * * 193596687 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC- 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA * ** * * 193596727 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA 1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA * * 193596767 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA * * * 193596807 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT 1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT 193596838 CATTCAATTT Statistics Matches: 90, Mismatches: 18, Indels: 7 0.78 0.16 0.06 Matches are distributed among these distances: 39 14 0.16 40 74 0.82 41 2 0.02 ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27 Consensus pattern (40 bp): GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA Found at i:193596821 original size:80 final size:79 Alignment explanation
Indices: 193596687--193596835 Score: 194 Period size: 80 Copynumber: 1.9 Consensus size: 79 193596677 ATAACCATGT * * 193596687 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC 193596752 CGGATGTAGCCACTA 65 CGGATGTAGCCACTA * * * * * 193596767 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC 193596830 CCGGAT 64 CCGGAT 193596836 ATCATTCAAT Statistics Matches: 60, Mismatches: 7, Indels: 5 0.83 0.10 0.07 Matches are distributed among these distances: 79 14 0.23 80 46 0.77 ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27 Consensus pattern (79 bp): GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC GGATGTAGCCACTA Found at i:193601416 original size:39 final size:38 Alignment explanation
Indices: 193601324--193601502 Score: 150 Period size: 39 Copynumber: 4.6 Consensus size: 38 193601314 AAATTGAATG * * * 193601324 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGAAAT-T 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCT--AGTCT * * 193601362 -TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGT-CT * 193601400 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCAT 1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTC-T * * * * 193601439 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTC-T * * * 193601478 GATATCCGGGTTAAGTCCCGTAGGC 1 -ATATCCGGGCTAAGACCCGAAGGC 193601503 CTTGGTGCGG Statistics Matches: 117, Mismatches: 16, Indels: 14 0.80 0.11 0.10 Matches are distributed among these distances: 36 2 0.02 37 11 0.09 38 21 0.18 39 61 0.52 40 22 0.19 ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23 Consensus pattern (38 bp): ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTCT Found at i:193609530 original size:36 final size:36 Alignment explanation
Indices: 193609403--193609550 Score: 145 Period size: 39 Copynumber: 3.9 Consensus size: 36 193609393 AAATTGAATG * * * * * 193609403 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAAATT 1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGCAG-TA-T * 193609442 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT 1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGTA--T 193609482 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGT-T 1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAGTAT * 193609518 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCA 1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCA 193609551 AATCGTGATA Statistics Matches: 96, Mismatches: 9, Indels: 11 0.83 0.08 0.09 Matches are distributed among these distances: 36 30 0.31 37 2 0.02 39 35 0.36 40 29 0.30 ACGTcount: A:0.28, C:0.23, G:0.26, T:0.24 Consensus pattern (36 bp): ATATCCGGGCTAAGACCCGAAGGCATTGTGCAGTAT Found at i:193609562 original size:76 final size:80 Alignment explanation
Indices: 193609401--193609581 Score: 201 Period size: 76 Copynumber: 2.3 Consensus size: 80 193609391 AGAAATTGAA * * * * 193609401 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAAATTATATCCGGGTTAAGACCCGAAGGC 1 TGATATCCGGGCTAAGACCCGAAGGCAATTACGCTGAAATTATATCCGGGCTAAGACCCGAAGGC * * 193609466 AATTGTGCTAGTAGC 66 AATTGTGCAAATAGC * * * 193609481 T-ATATCCGGGCTAAGACCCGAAGGC-ATT-CG-TGCAGTTTTATCCGGGCTAAGACCCGAAGGC 1 TGATATCCGGGCTAAGACCCGAAGGCAATTACGCTGAAATTATATCCGGGCTAAGACCCGAAGGC * * 193609542 ATTTGTGCAAATCG- 66 AATTGTGCAAATAGC * * * 193609556 TGATATCCGGGTTAAGTCCCGTAGGC 1 TGATATCCGGGCTAAGACCCGAAGGC 193609582 CTTGGTGCGG Statistics Matches: 86, Mismatches: 14, Indels: 6 0.81 0.13 0.06 Matches are distributed among these distances: 75 1 0.01 76 58 0.67 77 1 0.01 78 3 0.03 79 22 0.26 80 1 0.01 ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24 Consensus pattern (80 bp): TGATATCCGGGCTAAGACCCGAAGGCAATTACGCTGAAATTATATCCGGGCTAAGACCCGAAGGC AATTGTGCAAATAGC Found at i:193612373 original size:40 final size:40 Alignment explanation
Indices: 193612318--193612603 Score: 412 Period size: 40 Copynumber: 7.2 Consensus size: 40 193612308 GAGAATTGAG 193612318 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT * 193612358 AGTGATATATCCGGGCTAAGTCCCGAAGAACATTCGTGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT 193612398 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT * 193612438 AGTGATATATCCGGCCTAAGTCCCGAAGAGCATTCGTGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT * * * 193612478 AGTGATATACCCGGGCTAAGTCTCAAAGAGCATTCGTGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT * * * 193612518 AGAGTTATA-CCAGGGTTAAGTCCCGAAGAGCATTCGTGCT 1 AGTGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCT * * ** * * * 193612558 GGTGTTATATCTAGGCTAGGTCCCGAAGAGCAATCATGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT * 193612598 GGTGAT 1 AGTGAT 193612604 GTGTATTCGG Statistics Matches: 223, Mismatches: 21, Indels: 4 0.90 0.08 0.02 Matches are distributed among these distances: 39 2 0.01 40 220 0.99 41 1 0.00 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26 Consensus pattern (40 bp): AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT Found at i:193616351 original size:48 final size:48 Alignment explanation
Indices: 193616230--193616517 Score: 483 Period size: 48 Copynumber: 6.0 Consensus size: 48 193616220 ATATATATAT * 193616230 ATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG * * 193616278 ATA--TATATGTGGTAAAGCCGTATGGCTAAG-GTGAAATATATATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCT-AGTGTGAAATATGTATGAG 193616324 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG 193616372 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG 193616420 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG * * * * 193616468 ATATGTATATTTGGTAAAGCTGAATGGCTAATGTGAAATATGTAGGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG 193616516 AT 1 AT 193616518 GTGTGTATAT Statistics Matches: 228, Mismatches: 8, Indels: 8 0.93 0.03 0.03 Matches are distributed among these distances: 46 41 0.18 47 4 0.02 48 183 0.80 ACGTcount: A:0.35, C:0.06, G:0.28, T:0.32 Consensus pattern (48 bp): ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG Found at i:193616708 original size:37 final size:37 Alignment explanation
Indices: 193616658--193616760 Score: 161 Period size: 37 Copynumber: 2.8 Consensus size: 37 193616648 GGAAATATAT 193616658 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * 193616695 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * * * * 193616732 TCCGGGTGAGACCCGCTAACTACGAGTGG 1 TCCGGGTAAGACCCGATGACTACGTGTGG 193616761 GGACTATTCG Statistics Matches: 61, Mismatches: 5, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 37 61 1.00 ACGTcount: A:0.22, C:0.21, G:0.33, T:0.23 Consensus pattern (37 bp): TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG Found at i:193618092 original size:40 final size:40 Alignment explanation
Indices: 193618037--193618319 Score: 392 Period size: 40 Copynumber: 7.1 Consensus size: 40 193618027 GAGAATTGAG 193618037 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA 1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA * 193618077 GTGATATATCCGGGCTAAGT-CCGAAGAACATTCGTGCTA 1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA 193618116 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA 1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA * 193618156 GTGATATATCCGGCCTAAGTCCCGAAGAGCATTCGTGCTA 1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA * * * 193618196 GTGATATACCCGGGCTAAGTCTC-AAAAGCATTCGTGCTA 1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA * * * * 193618235 GAGTTATA-CCAGGGTTAAGTCCCGAAGAGCATTCGTGCTG 1 GTGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCTA * ** * * * * 193618275 GTGTTATATCTAGGCTAGGTCCCGAAGAGCAATCATGCTG 1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA 193618315 GTGAT 1 GTGAT 193618320 GTGTATTTGG Statistics Matches: 218, Mismatches: 21, Indels: 8 0.88 0.09 0.03 Matches are distributed among these distances: 38 2 0.01 39 69 0.32 40 146 0.67 41 1 0.00 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26 Consensus pattern (40 bp): GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA Found at i:193618168 original size:79 final size:80 Alignment explanation
Indices: 193618037--193618319 Score: 392 Period size: 79 Copynumber: 3.6 Consensus size: 80 193618027 GAGAATTGAG 193618037 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGT-CCGA 1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA * 193618101 AGAACATTCGTGCTA 66 AGAGCATTCGTGCTA * 193618116 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGCCTAAGTCCCGA 1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA 193618181 AGAGCATTCGTGCTA 66 AGAGCATTCGTGCTA * * * * * * 193618196 GTGATATACCCGGGCTAAGTCTC-AAAAGCATTCGTGCTAGAGTTATA-CCAGGGTTAAGTCCCG 1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC-GGGCTAAGTCCCG * 193618259 AAGAGCATTCGTGCTG 65 AAGAGCATTCGTGCTA * ** * * * * 193618275 GTGTTATATCTAGGCTAGGTCCCGAAGAGCAATCATGCTGGTGAT 1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT 193618320 GTGTATTTGG Statistics Matches: 179, Mismatches: 22, Indels: 5 0.87 0.11 0.02 Matches are distributed among these distances: 78 2 0.01 79 123 0.69 80 54 0.30 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26 Consensus pattern (80 bp): GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA AGAGCATTCGTGCTA Found at i:193618254 original size:119 final size:118 Alignment explanation
Indices: 193618037--193618319 Score: 392 Period size: 119 Copynumber: 2.4 Consensus size: 118 193618027 GAGAATTGAG * 193618037 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAA 1 GTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCCGAA * 193618102 GAACATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA 65 GAACATTCGTGCTAGAGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA 193618156 GTGATATATCCGGCCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCTC-A 1 GTGATATATCCGG-CTAAGTCCCGAAGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTC-CGA * * * 193618220 A-AAGCATTCGTGCTAGAGTTATA-CCAGGGTTAAGTCCCGAAGAGCATTCGTGCTG 64 AGAA-CATTCGTGCTAGAGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCTA * * * * * * 193618275 GTGTTATATCTAGGCTAGGTCCCGAAGAGCAATCATGCTGGTGAT 1 GTGATATATC-CGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT 193618320 GTGTATTTGG Statistics Matches: 148, Mismatches: 11, Indels: 10 0.88 0.07 0.06 Matches are distributed among these distances: 118 6 0.04 119 139 0.94 120 3 0.02 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26 Consensus pattern (118 bp): GTGATATATCCGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCCGAAG AACATTCGTGCTAGAGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA Found at i:193618531 original size:25 final size:25 Alignment explanation
Indices: 193618481--193618531 Score: 59 Period size: 25 Copynumber: 2.0 Consensus size: 25 193618471 TGTGTAACAA * * 193618481 CAAATGAATAGGGGCACTATGTGTG 1 CAAATGAATAGAGGCACTATGAGTG * 193618506 CAAATGATTAGAGGCACTGA-GAGTG 1 CAAATGAATAGAGGCACT-ATGAGTG 193618531 C 1 C 193618532 GAGTTCTTCA Statistics Matches: 22, Mismatches: 3, Indels: 2 0.81 0.11 0.07 Matches are distributed among these distances: 25 21 0.95 26 1 0.05 ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22 Consensus pattern (25 bp): CAAATGAATAGAGGCACTATGAGTG Found at i:193621670 original size:93 final size:93 Alignment explanation
Indices: 193621558--193621729 Score: 317 Period size: 93 Copynumber: 1.8 Consensus size: 93 193621548 GCCCATAAGT * * 193621558 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 193621623 CGAGTTCGGATGCCTAGTTACATCTCAC 66 CGAGTTCGGATGCCTAGTTACATCTCAC * 193621651 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 193621716 CGAGTTCGGATGCC 66 CGAGTTCGGATGCC 193621730 CAAATATCCC Statistics Matches: 76, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 76 1.00 ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATCTCAC Found at i:193621725 original size:46 final size:46 Alignment explanation
Indices: 193621550--193621725 Score: 232 Period size: 46 Copynumber: 3.8 Consensus size: 46 193621540 TGTAACCCGC * * * 193621550 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT * * 193621596 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT * * 193621646 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT 193621689 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 193621726 TGCCCAAATA Statistics Matches: 112, Mismatches: 11, Indels: 14 0.82 0.08 0.10 Matches are distributed among these distances: 43 3 0.03 44 1 0.01 45 2 0.02 46 68 0.61 47 32 0.29 48 2 0.02 49 1 0.01 50 3 0.03 ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20 Consensus pattern (46 bp): CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT Found at i:193624153 original size:30 final size:30 Alignment explanation
Indices: 193624109--193624197 Score: 101 Period size: 30 Copynumber: 3.0 Consensus size: 30 193624099 CAAAGATAAC 193624109 AAGAAAACC-GAATAAAGAAATCCAAGATA 1 AAGAAAACCAGAATAAAGAAATCCAAGATA * * 193624138 GAGAAACCCAGAATAAAGAAATCC-AGAATA 1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA * * * * 193624168 AAGAGATCCAGGATAAAGAAACCCAAGATA 1 AAGAAAACCAGAATAAAGAAATCCAAGATA 193624198 CGATACTATG Statistics Matches: 50, Mismatches: 7, Indels: 5 0.81 0.11 0.08 Matches are distributed among these distances: 29 9 0.18 30 39 0.78 31 2 0.04 ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10 Consensus pattern (30 bp): AAGAAAACCAGAATAAAGAAATCCAAGATA Found at i:193624157 original size:15 final size:15 Alignment explanation
Indices: 193624109--193624188 Score: 92 Period size: 15 Copynumber: 5.4 Consensus size: 15 193624099 CAAAGATAAC * 193624109 AAGAAAACC-GAATA 1 AAGAAATCCAGAATA 193624123 AAGAAATCCA-AGATA 1 AAGAAATCCAGA-ATA * * 193624138 GAGAAACCCAGAATA 1 AAGAAATCCAGAATA 193624153 AAGAAATCCAGAATA 1 AAGAAATCCAGAATA * * 193624168 AAGAGATCCAGGATA 1 AAGAAATCCAGAATA 193624183 AAGAAA 1 AAGAAA 193624189 CCCAAGATAC Statistics Matches: 55, Mismatches: 8, Indels: 5 0.81 0.12 0.07 Matches are distributed among these distances: 14 9 0.16 15 45 0.82 16 1 0.02 ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10 Consensus pattern (15 bp): AAGAAATCCAGAATA Found at i:193624197 original size:15 final size:15 Alignment explanation
Indices: 193624120--193624197 Score: 79 Period size: 15 Copynumber: 5.2 Consensus size: 15 193624110 AGAAAACCGA 193624120 ATAAAGAAATCCAAG 1 ATAAAGAAATCCAAG * * 193624135 ATAGAGAAA-CCCAG 1 ATAAAGAAATCCAAG 193624149 AATAAAGAAATCC-AG 1 -ATAAAGAAATCCAAG * * 193624164 AATAAAGAGATCCAGG 1 -ATAAAGAAATCCAAG * 193624180 ATAAAGAAACCCAAG 1 ATAAAGAAATCCAAG 193624195 ATA 1 ATA 193624198 CGATACTATG Statistics Matches: 52, Mismatches: 8, Indels: 6 0.79 0.12 0.09 Matches are distributed among these distances: 14 4 0.08 15 45 0.87 16 3 0.06 ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12 Consensus pattern (15 bp): ATAAAGAAATCCAAG Found at i:193627222 original size:93 final size:93 Alignment explanation
Indices: 193627110--193627281 Score: 317 Period size: 93 Copynumber: 1.8 Consensus size: 93 193627100 GCCCATAAGT * * 193627110 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 193627175 CGAGTTCGGATGCCTAGTTACATCTCAC 66 CGAGTTCGGATGCCTAGTTACATCTCAC * 193627203 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 193627268 CGAGTTCGGATGCC 66 CGAGTTCGGATGCC 193627282 CAAATATCCC Statistics Matches: 76, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 76 1.00 ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATCTCAC Found at i:193627277 original size:46 final size:46 Alignment explanation
Indices: 193627102--193627277 Score: 232 Period size: 46 Copynumber: 3.8 Consensus size: 46 193627092 TGTAACCCGC * * * 193627102 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT * * 193627148 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT * * 193627198 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT 193627241 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 193627278 TGCCCAAATA Statistics Matches: 112, Mismatches: 11, Indels: 14 0.82 0.08 0.10 Matches are distributed among these distances: 43 3 0.03 44 1 0.01 45 2 0.02 46 68 0.61 47 32 0.29 48 2 0.02 49 1 0.01 50 3 0.03 ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20 Consensus pattern (46 bp): CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT Found at i:193630237 original size:2 final size:2 Alignment explanation
Indices: 193630230--193630274 Score: 90 Period size: 2 Copynumber: 22.5 Consensus size: 2 193630220 TACACAAATT 193630230 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 193630272 TA T 1 TA T 193630275 GTGGTAAAGC Statistics Matches: 43, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 43 1.00 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (2 bp): TA Found at i:193630358 original size:48 final size:48 Alignment explanation
Indices: 193630265--193630552 Score: 474 Period size: 48 Copynumber: 6.0 Consensus size: 48 193630255 ATATATATAT * 193630265 ATATATATATGTGGTAAAGCC-AATGGCTAGTGTGAAATATGTATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG * * * 193630312 ATATATATATGTGGTAAAGCCGTATGGCTAAG-GTGAAATATATATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCT-AGTGTGAAATATGTATGAG 193630360 ATATGTATATGTGGTAAAG-CGAATGGCTAGTGTGAAATATGTATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG * 193630407 ATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG 193630455 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG * * * 193630503 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG 1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG 193630551 AT 1 AT 193630553 GTGTGTATAT Statistics Matches: 227, Mismatches: 10, Indels: 7 0.93 0.04 0.03 Matches are distributed among these distances: 46 2 0.01 47 63 0.28 48 160 0.70 49 2 0.01 ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32 Consensus pattern (48 bp): ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG Found at i:193630434 original size:95 final size:95 Alignment explanation
Indices: 193630255--193630552 Score: 465 Period size: 95 Copynumber: 3.1 Consensus size: 95 193630245 ATATATATAT * * * * 193630255 ATATATAT-ATATATATATATGTGGTAAAGCCAATGGCTAGTGTGAAATATGTATGAGATATATA 1 ATATATATGAGATATGTATATGTGGTAAAGCGAATGGCTAGTGTGAAATATGTATGAGATATGTA * 193630319 TATGTGGTAAAGCCGTATGGCTAAGGTGAA 66 TATGTGGTAAAGCCGAATGGCTAAGGTGAA 193630349 ATATATATGAGATATGTATATGTGGTAAAGCGAATGGCTAGTGTGAAATATGTATGAGATATGTA 1 ATATATATGAGATATGTATATGTGGTAAAGCGAATGGCTAGTGTGAAATATGTATGAGATATGTA * 193630414 TATGTGGTAAAGCTGAATGGCT-AGTGTGAA 66 TATGTGGTAAAGCCGAATGGCTAAG-GTGAA * 193630444 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT 1 ATATATATGAGATATGTATATGTGGTAAAG-CGAATGGCTAGTGTGAAATATGTATGAGATATGT * * 193630509 ATATTTGGTAAAGCCGAATGGCTAATGTGAA 65 ATATGTGGTAAAGCCGAATGGCTAAGGTGAA * * 193630540 ATATGTAGGAGAT 1 ATATATATGAGAT 193630553 GTGTGTATAT Statistics Matches: 189, Mismatches: 11, Indels: 6 0.92 0.05 0.03 Matches are distributed among these distances: 94 10 0.05 95 106 0.56 96 72 0.38 97 1 0.01 ACGTcount: A:0.36, C:0.05, G:0.27, T:0.33 Consensus pattern (95 bp): ATATATATGAGATATGTATATGTGGTAAAGCGAATGGCTAGTGTGAAATATGTATGAGATATGTA TATGTGGTAAAGCCGAATGGCTAAGGTGAA Found at i:193630443 original size:143 final size:143 Alignment explanation
Indices: 193630265--193630552 Score: 472 Period size: 143 Copynumber: 2.0 Consensus size: 143 193630255 ATATATATAT 193630265 ATATATATATGTGGTAAAGCCAATGGCTAGTGTGAAATATGTATGAGATATATATATGTGGTAAA 1 ATATATATATGTGGTAAAGCCAATGGCTAGTGTGAAATATGTATGAGATATATATATGTGGTAAA * * 193630330 GCCGTATGGCTAAG-GTGAAATATATATGAGATATGTATATGTGGTAAAG-CGAATGGCTAGTGT 66 GCCGAATGGCT-AGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT * 193630393 GAAATATGTATGAG 130 GAAATATGTAGGAG * * * 193630407 ATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA 1 ATATATATATGTGGTAAAGC-CAATGGCTAGTGTGAAATATGTATGAGATATATATATGTGGTAA * * 193630472 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATTTGGTAAAGCCGAATGGCTAATGT 65 AGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT 193630537 GAAATATGTAGGAG 130 GAAATATGTAGGAG 193630551 AT 1 AT 193630553 GTGTGTATAT Statistics Matches: 135, Mismatches: 8, Indels: 4 0.92 0.05 0.03 Matches are distributed among these distances: 142 21 0.16 143 86 0.64 144 28 0.21 ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32 Consensus pattern (143 bp): ATATATATATGTGGTAAAGCCAATGGCTAGTGTGAAATATGTATGAGATATATATATGTGGTAAA GCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG AAATATGTAGGAG Found at i:193630585 original size:143 final size:142 Alignment explanation
Indices: 193630295--193630587 Score: 401 Period size: 143 Copynumber: 2.0 Consensus size: 142 193630285 CAATGGCTAG * 193630295 TGTGAAATATGTATGAGATATATATATGTGGTAAAGCCGTATGGCTAAGGTGAAATATATATGAG 1 TGTGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAAGGTGAAATATATATGAG * * * 193630360 ATATGTATATGTGGTAAAGCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAA 66 ATATGTATATGTGGTAAAGCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATATGGT-AA * * * * 193630425 GCTGAATGGCTAG 130 GCCGAATGCCAAA * * 193630438 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AGTGTGAAATATGTATGA 1 TGTGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAAG-GTGAAATATATATGA * * * * 193630502 GATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATGTGTGTATATTGT- 65 GATATGTATATGTGGTAAAG-CGAATGGCTAATGTGAAATATGTAGGAGATATGTATATATGGTA * 193630566 GGCCGAATGACCAAA 129 AGCCGAATG-CCAAA 193630581 TGTGAAA 1 TGTGAAA 193630588 GGTGTGTATT Statistics Matches: 132, Mismatches: 15, Indels: 6 0.86 0.10 0.04 Matches are distributed among these distances: 142 9 0.07 143 86 0.65 144 37 0.28 ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32 Consensus pattern (142 bp): TGTGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAAGGTGAAATATATATGAG ATATGTATATGTGGTAAAGCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATATGGTAAG CCGAATGCCAAA Found at i:193630743 original size:37 final size:37 Alignment explanation
Indices: 193630693--193630780 Score: 142 Period size: 37 Copynumber: 2.4 Consensus size: 37 193630683 GGAAATATAT 193630693 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * 193630730 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG 1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG * * 193630767 TTC-GGTGAGACCCG 1 TCCGGGTAAGACCCG 193630781 CTAAATACGA Statistics Matches: 48, Mismatches: 3, Indels: 1 0.92 0.06 0.02 Matches are distributed among these distances: 36 10 0.21 37 38 0.79 ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25 Consensus pattern (37 bp): TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG Found at i:193632124 original size:40 final size:40 Alignment explanation
Indices: 193632069--193632338 Score: 364 Period size: 40 Copynumber: 6.8 Consensus size: 40 193632059 GAGAATTGAG * * 193632069 AGTGATATATCCGGGCTAAGTACCGAAGAGCATTCCTGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT * * 193632109 AGTGATATATCCGGGCTAAGTTCCGAAGAACATTCGTGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT 193632149 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT * 193632189 AGTGATATATCCGGCCTAAGTCCCGAAGAGCATTCGTGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT * * * * 193632229 AGTGATATACCCGAGCTAAGTCTCAAAGAGCATTCGTGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT * * * * 193632269 AGAGTTATA-CC-AGTTAAGTCCCGAAGAGCATTCGTGCT 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT * * ** * 193632307 GGTGTTATATCTAGGCTAGGTCCCGAAGAGCA 1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA 193632339 ATCAAGCTGG Statistics Matches: 206, Mismatches: 22, Indels: 4 0.89 0.09 0.02 Matches are distributed among these distances: 38 31 0.15 39 3 0.01 40 172 0.83 ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26 Consensus pattern (40 bp): AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT Found at i:193632564 original size:25 final size:25 Alignment explanation
Indices: 193632514--193632564 Score: 59 Period size: 25 Copynumber: 2.0 Consensus size: 25 193632504 TGTGTAACAA * * 193632514 CAAATGAATAGGGGCACTATGTGTG 1 CAAATGAATAGAGGCACTATGAGTG * 193632539 CAAATGATTAGAGGCACTGA-GAGTG 1 CAAATGAATAGAGGCACT-ATGAGTG 193632564 C 1 C 193632565 GAGTTCTTCA Statistics Matches: 22, Mismatches: 3, Indels: 2 0.81 0.11 0.07 Matches are distributed among these distances: 25 21 0.95 26 1 0.05 ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22 Consensus pattern (25 bp): CAAATGAATAGAGGCACTATGAGTG Found at i:193635335 original size:17 final size:19 Alignment explanation
Indices: 193635312--193635357 Score: 53 Period size: 17 Copynumber: 2.5 Consensus size: 19 193635302 AAGAAGCATG 193635312 AATCATGCTCAAGAATG-C 1 AATCATGCTCAAGAATGAC * 193635330 -ATCATGGC-CAAGTATGAC 1 AATCAT-GCTCAAGAATGAC 193635348 AATCATGCTC 1 AATCATGCTC 193635358 CTTTTCAACT Statistics Matches: 23, Mismatches: 1, Indels: 7 0.74 0.03 0.23 Matches are distributed among these distances: 17 12 0.52 18 5 0.22 19 6 0.26 ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24 Consensus pattern (19 bp): AATCATGCTCAAGAATGAC Found at i:193642373 original size:40 final size:40 Alignment explanation
Indices: 193642328--193642494 Score: 185 Period size: 40 Copynumber: 4.2 Consensus size: 40 193642318 CGGAATATAA 193642328 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC * * * * * 193642368 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC * * * 193642408 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC ** * * * * 193642448 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC 193642487 CCGGATAT 1 CCGGATAT 193642495 CATTCAATTT Statistics Matches: 107, Mismatches: 19, Indels: 3 0.83 0.15 0.02 Matches are distributed among these distances: 39 14 0.13 40 93 0.87 ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26 Consensus pattern (40 bp): CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC Found at i:193642478 original size:80 final size:79 Alignment explanation
Indices: 193642328--193642494 Score: 205 Period size: 80 Copynumber: 2.1 Consensus size: 79 193642318 CGGAATATAA * * 193642328 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG 1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG 193642393 CCTTCGGGCCTTAGC 66 CCTTCGGG-CTTAGC * * ** * 193642408 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA 1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA * 193642470 TTGTCTTCGGGCTTAGC 64 -TGCCTTCGGGCTTAGC 193642487 CCGGATAT 1 CCGGATAT 193642495 CATTCAATTT Statistics Matches: 76, Mismatches: 8, Indels: 7 0.84 0.09 0.08 Matches are distributed among these distances: 79 18 0.24 80 58 0.76 ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26 Consensus pattern (79 bp): CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG CCTTCGGGCTTAGC Found at i:193643340 original size:17 final size:19 Alignment explanation
Indices: 193643317--193643362 Score: 53 Period size: 17 Copynumber: 2.5 Consensus size: 19 193643307 AAGAAGCATG 193643317 AATCATGCTCAAGAATG-C 1 AATCATGCTCAAGAATGAC * 193643335 -ATCATGGC-CAAGTATGAC 1 AATCAT-GCTCAAGAATGAC 193643353 AATCATGCTC 1 AATCATGCTC 193643363 CTTTTCAACT Statistics Matches: 23, Mismatches: 1, Indels: 7 0.74 0.03 0.23 Matches are distributed among these distances: 17 12 0.52 18 5 0.22 19 6 0.26 ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24 Consensus pattern (19 bp): AATCATGCTCAAGAATGAC Found at i:193654223 original size:23 final size:23 Alignment explanation
Indices: 193654197--193654241 Score: 56 Period size: 23 Copynumber: 2.0 Consensus size: 23 193654187 TGGGTATGTG * 193654197 ATGACGTTATCTT-ATAAATATGC 1 ATGAAGTTATCTTGA-AAATATGC * 193654220 ATGAATTTATCTTGAAAATATG 1 ATGAAGTTATCTTGAAAATATG 193654242 TTGAATTGGT Statistics Matches: 19, Mismatches: 2, Indels: 2 0.83 0.09 0.09 Matches are distributed among these distances: 23 18 0.95 24 1 0.05 ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40 Consensus pattern (23 bp): ATGAAGTTATCTTGAAAATATGC Found at i:193655047 original size:15 final size:15 Alignment explanation
Indices: 193655027--193655123 Score: 141 Period size: 15 Copynumber: 6.8 Consensus size: 15 193655017 AACAATGTAA 193655027 AACTGTGTATTCTAC 1 AACTGTGTATTCTAC 193655042 AACTGTGTATTCTAC 1 AACTGTGTATTCTAC 193655057 AACTGTGTATTCTAC 1 AACTGTGTATTCTAC ** 193655072 AACAATGTA----A- 1 AACTGTGTATTCTAC 193655082 AACTGTGTATTCTAC 1 AACTGTGTATTCTAC 193655097 AACTGTGTATTCTAC 1 AACTGTGTATTCTAC 193655112 AACTGTGTATTC 1 AACTGTGTATTC 193655124 CAAATAGGCA Statistics Matches: 73, Mismatches: 4, Indels: 10 0.84 0.05 0.11 Matches are distributed among these distances: 10 7 0.10 11 1 0.01 14 1 0.01 15 64 0.88 ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38 Consensus pattern (15 bp): AACTGTGTATTCTAC Found at i:193655099 original size:55 final size:55 Alignment explanation
Indices: 193655015--193655123 Score: 218 Period size: 55 Copynumber: 2.0 Consensus size: 55 193655005 CCTTTCAATA 193655015 ACAACAATGTAAAACTGTGTATTCTACAACTGTGTATTCTACAACTGTGTATTCT 1 ACAACAATGTAAAACTGTGTATTCTACAACTGTGTATTCTACAACTGTGTATTCT 193655070 ACAACAATGTAAAACTGTGTATTCTACAACTGTGTATTCTACAACTGTGTATTC 1 ACAACAATGTAAAACTGTGTATTCTACAACTGTGTATTCTACAACTGTGTATTC 193655124 CAAATAGGCA Statistics Matches: 54, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 55 54 1.00 ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36 Consensus pattern (55 bp): ACAACAATGTAAAACTGTGTATTCTACAACTGTGTATTCTACAACTGTGTATTCT Found at i:193658304 original size:23 final size:22 Alignment explanation
Indices: 193658253--193658304 Score: 52 Period size: 23 Copynumber: 2.3 Consensus size: 22 193658243 ACAAGGTCAA * * 193658253 AATT-AAATTGTAATTTTTACG 1 AATTAAAAATGTAATTTTTAAG * 193658274 ATAATAAAAATGTAATTTTTAAAG 1 A-ATTAAAAATGTAATTTTT-AAG 193658298 AATTAAA 1 AATTAAA 193658305 TCAAAATTTT Statistics Matches: 24, Mismatches: 4, Indels: 4 0.75 0.12 0.12 Matches are distributed among these distances: 21 1 0.04 22 2 0.08 23 18 0.75 24 3 0.12 ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40 Consensus pattern (22 bp): AATTAAAAATGTAATTTTTAAG Found at i:193660159 original size:27 final size:28 Alignment explanation
Indices: 193660102--193660171 Score: 106 Period size: 27 Copynumber: 2.5 Consensus size: 28 193660092 AAATTTGTAC ** 193660102 AGCACTAAGTGTGCGAATTTGATTATAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT * 193660130 AGCACTATGTGTGCG-AGCTGATTATAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT 193660157 AGCACTAAGTGTGCG 1 AGCACTAAGTGTGCG 193660172 GACTTATTAT Statistics Matches: 38, Mismatches: 4, Indels: 1 0.88 0.09 0.02 Matches are distributed among these distances: 27 24 0.63 28 14 0.37 ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31 Consensus pattern (28 bp): AGCACTAAGTGTGCGAAGCTGATTATAT Found at i:193660180 original size:27 final size:27 Alignment explanation
Indices: 193660102--193660183 Score: 103 Period size: 27 Copynumber: 3.0 Consensus size: 27 193660092 AAATTTGTAC * * 193660102 AGCACTAAGTGTGCGAATTTGATTATAT 1 AGCACTAAGTGTGCGGACTT-ATTATAT * * 193660130 AGCACTATGTGTGC-GAGCTGATTATAT 1 AGCACTAAGTGTGCGGA-CTTATTATAT 193660157 AGCACTAAGTGTGCGGACTTATTATAT 1 AGCACTAAGTGTGCGGACTTATTATAT 193660184 GCTTTTGCAT Statistics Matches: 46, Mismatches: 6, Indels: 5 0.81 0.11 0.09 Matches are distributed among these distances: 27 30 0.65 28 16 0.35 ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34 Consensus pattern (27 bp): AGCACTAAGTGTGCGGACTTATTATAT Found at i:193669768 original size:22 final size:22 Alignment explanation
Indices: 193669743--193669784 Score: 57 Period size: 22 Copynumber: 1.9 Consensus size: 22 193669733 TTTATTCTAA * 193669743 TCTTAATCTTATTTCTTTTTGC 1 TCTTAATCTTATTTATTTTTGC * * 193669765 TCTTATTCTTTTTTATTTTT 1 TCTTAATCTTATTTATTTTT 193669785 CCCAAAAGCT Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 22 17 1.00 ACGTcount: A:0.12, C:0.14, G:0.02, T:0.71 Consensus pattern (22 bp): TCTTAATCTTATTTATTTTTGC Found at i:193671016 original size:28 final size:28 Alignment explanation
Indices: 193670983--193671038 Score: 103 Period size: 28 Copynumber: 2.0 Consensus size: 28 193670973 TAGATCACAG 193670983 AATTACCCCTAAAGAGCAAAATTACCGA 1 AATTACCCCTAAAGAGCAAAATTACCGA * 193671011 AATTACCCCTAAAGAGCATAATTACCGA 1 AATTACCCCTAAAGAGCAAAATTACCGA 193671039 TATACCCTAG Statistics Matches: 27, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 28 27 1.00 ACGTcount: A:0.45, C:0.25, G:0.11, T:0.20 Consensus pattern (28 bp): AATTACCCCTAAAGAGCAAAATTACCGA Found at i:193674018 original size:46 final size:46 Alignment explanation
Indices: 193673951--193674126 Score: 201 Period size: 46 Copynumber: 3.8 Consensus size: 46 193673941 TGTAACTCGC * * * 193673951 CCATAAGTGAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT * * 193673997 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCCTAG-TT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTAGCAT * *** * * * * 193674043 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGACATTTGCAT 1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT * 193674090 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA 193674127 TGCTCAACCA Statistics Matches: 107, Mismatches: 20, Indels: 6 0.80 0.15 0.05 Matches are distributed among these distances: 46 72 0.67 47 35 0.33 ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22 Consensus pattern (46 bp): CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT Found at i:193674586 original size:30 final size:30 Alignment explanation
Indices: 193674552--193674611 Score: 93 Period size: 30 Copynumber: 2.0 Consensus size: 30 193674542 ATTTAATATG 193674552 AACTTTGGAAAAATTACACTTTTGCCCCTA 1 AACTTTGGAAAAATTACACTTTTGCCCCTA * * * 193674582 AACTTTTGCATAATTACACTTTTGCCCCTA 1 AACTTTGGAAAAATTACACTTTTGCCCCTA 193674612 GGCTCGGGAA Statistics Matches: 27, Mismatches: 3, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 30 27 1.00 ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37 Consensus pattern (30 bp): AACTTTGGAAAAATTACACTTTTGCCCCTA Found at i:193678451 original size:9 final size:9 Alignment explanation
Indices: 193678439--193678495 Score: 51 Period size: 9 Copynumber: 5.9 Consensus size: 9 193678429 TTTGATAAAC 193678439 ATGATATGT 1 ATGATATGT * 193678448 ATGATATGCAC 1 ATGATATG--T * 193678459 ATGACATGT 1 ATGATATGT * 193678468 ATGATATGCAC 1 ATGATATG--T 193678479 ATGATATGT 1 ATGATATGT 193678488 ATGATATG 1 ATGATATG 193678496 CACATGAGAT Statistics Matches: 38, Mismatches: 6, Indels: 8 0.73 0.12 0.15 Matches are distributed among these distances: 9 23 0.61 11 15 0.39 ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35 Consensus pattern (9 bp): ATGATATGT Found at i:193678462 original size:20 final size:20 Alignment explanation
Indices: 193678437--193678507 Score: 124 Period size: 20 Copynumber: 3.5 Consensus size: 20 193678427 ATTTTGATAA 193678437 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC * 193678457 ACATGACATGTATGATATGC 1 ACATGATATGTATGATATGC 193678477 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC * 193678497 ACATGAGATGT 1 ACATGATATGT 193678508 TCATAAATGC Statistics Matches: 48, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 20 48 1.00 ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32 Consensus pattern (20 bp): ACATGATATGTATGATATGC Found at i:193678484 original size:11 final size:11 Alignment explanation
Indices: 193678448--193678502 Score: 55 Period size: 11 Copynumber: 5.4 Consensus size: 11 193678438 CATGATATGT 193678448 ATGATATGCAC 1 ATGATATGCAC * * 193678459 ATGACATG--T 1 ATGATATGCAC 193678468 ATGATATGCAC 1 ATGATATGCAC * 193678479 ATGATATG--T 1 ATGATATGCAC 193678488 ATGATATGCAC 1 ATGATATGCAC 193678499 ATGA 1 ATGA 193678503 GATGTTCATA Statistics Matches: 34, Mismatches: 6, Indels: 8 0.71 0.12 0.17 Matches are distributed among these distances: 9 15 0.44 11 19 0.56 ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31 Consensus pattern (11 bp): ATGATATGCAC Found at i:193678584 original size:23 final size:23 Alignment explanation
Indices: 193678554--193678696 Score: 225 Period size: 23 Copynumber: 6.1 Consensus size: 23 193678544 AAGAAGTGCA 193678554 AAAGGGCTTATGCCCCAGTTATT 1 AAAGGGCTTATGCCCCAGTTATT * 193678577 AAAGGGCTTATGCCCCAGTTATCA 1 AAAGGGCTTATGCCCCAGTTAT-T 193678601 AAAGGGCTTATGCCCCAGTTATT 1 AAAGGGCTTATGCCCCAGTTATT * 193678624 AAAGGGCTTATGCCCCAGTTATCA 1 AAAGGGCTTATGCCCCAGTTAT-T 193678648 AAAGGG-TTATGCCCCAGTTATT 1 AAAGGGCTTATGCCCCAGTTATT * 193678670 AAAAGGGCTTTTGCCCCAGTTATT 1 -AAAGGGCTTATGCCCCAGTTATT 193678694 AAA 1 AAA 193678697 AGAGGCTAGG Statistics Matches: 111, Mismatches: 5, Indels: 8 0.90 0.04 0.06 Matches are distributed among these distances: 23 68 0.61 24 43 0.39 ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29 Consensus pattern (23 bp): AAAGGGCTTATGCCCCAGTTATT Found at i:193678621 original size:47 final size:47 Alignment explanation
Indices: 193678552--193678717 Score: 264 Period size: 47 Copynumber: 3.5 Consensus size: 47 193678542 GGAAGAAGTG 193678552 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT 193678599 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT * 193678646 CAAAAGGG-TTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTAT 1 CAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTAT * * 193678693 TAAAAGAGGC-TAGGCCTCCAGTTAT 1 CAAAAG-GGCTTATGCC-CCAGTTAT 193678718 ATGATAAAGC Statistics Matches: 112, Mismatches: 3, Indels: 6 0.93 0.02 0.05 Matches are distributed among these distances: 46 16 0.14 47 81 0.72 48 7 0.06 49 8 0.07 ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28 Consensus pattern (47 bp): CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT Found at i:193678667 original size:70 final size:70 Alignment explanation
Indices: 193678554--193678718 Score: 244 Period size: 70 Copynumber: 2.3 Consensus size: 70 193678544 AAGAAGTGCA * 193678554 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG 1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG 193678619 TTATT 66 TTATT * * 193678624 AAAGGGCTTATGCCCCAGTTATCAAAAGGG-TTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCA 1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA 193678688 GTTATT 65 GTTATT * 193678694 AAAAGAGGC-TAGGCCTCCAGTTATA 1 -AAAG-GGCTTATGCC-CCAGTTATA 193678719 TGATAAAGCA Statistics Matches: 87, Mismatches: 4, Indels: 7 0.89 0.04 0.07 Matches are distributed among these distances: 70 60 0.69 71 16 0.18 72 11 0.13 ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28 Consensus pattern (70 bp): AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG TTATT Found at i:193680185 original size:24 final size:24 Alignment explanation
Indices: 193680158--193680212 Score: 83 Period size: 24 Copynumber: 2.3 Consensus size: 24 193680148 AAACTTATCA ** 193680158 ACTCACATTGCTTTACTAGTCAAT 1 ACTCACATTAATTTACTAGTCAAT * 193680182 ACTCACTTTAATTTACTAGTCAAT 1 ACTCACATTAATTTACTAGTCAAT 193680206 ACTCACA 1 ACTCACA 193680213 ATATATATAT Statistics Matches: 27, Mismatches: 4, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 24 27 1.00 ACGTcount: A:0.33, C:0.25, G:0.05, T:0.36 Consensus pattern (24 bp): ACTCACATTAATTTACTAGTCAAT Found at i:193686222 original size:40 final size:40 Alignment explanation
Indices: 193686161--193686304 Score: 162 Period size: 42 Copynumber: 3.5 Consensus size: 40 193686151 CGATATCTCA * * * 193686161 CACACTAAGTGTCGTACATAGCCGAAGCTATCTCAAATCG 1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCG * * * 193686201 CACACTAAGTGCCATATATAGCCGAAGCTATGTGAAATCTCA 1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAA--TCG * ** 193686243 CACACTAAGGGCCATATATAGCCGAAGCTATCTCGATCTCG 1 CACACTAAGTGCCATATATAGCCGAAGCTATCTC-AAATCG * * 193686284 CACACTAAGTGCTACATATAG 1 CACACTAAGTGCCATATATAG 193686305 TTGATTCACC Statistics Matches: 86, Mismatches: 15, Indels: 5 0.81 0.14 0.05 Matches are distributed among these distances: 40 32 0.37 41 20 0.23 42 33 0.38 43 1 0.01 ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23 Consensus pattern (40 bp): CACACTAAGTGCCATATATAGCCGAAGCTATCTCAAATCG Found at i:193686260 original size:42 final size:42 Alignment explanation
Indices: 193686155--193686304 Score: 180 Period size: 40 Copynumber: 3.6 Consensus size: 42 193686145 CATAATCGAT * * * 193686155 ATCTCACACACTAAGTGTCGTACATAGCCGAAGCTATCTCAA 1 ATCTCACACACTAAGTGCCATATATAGCCGAAGCTATCTCAA * * * 193686197 A--TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTGAA 1 ATCTCACACACTAAGTGCCATATATAGCCGAAGCTATCTCAA * * 193686237 ATCTCACACACTAAGGGCCATATATAGCCGAAGCTATCTC-G 1 ATCTCACACACTAAGTGCCATATATAGCCGAAGCTATCTCAA * * * 193686278 ATCTCGCACACTAAGTGCTACATATAG 1 ATCTCACACACTAAGTGCCATATATAG 193686305 TTGATTCACC Statistics Matches: 91, Mismatches: 15, Indels: 5 0.82 0.14 0.05 Matches are distributed among these distances: 40 34 0.37 41 23 0.25 42 34 0.37 ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23 Consensus pattern (42 bp): ATCTCACACACTAAGTGCCATATATAGCCGAAGCTATCTCAA Found at i:193690844 original size:40 final size:39 Alignment explanation
Indices: 193690679--193690862 Score: 138 Period size: 40 Copynumber: 4.6 Consensus size: 39 193690669 AAATTGAATG * * * 193690679 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T 1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT * * * * * * 193690719 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T * * * * * 193690759 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT * 193690799 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT * * * 193690838 GATATCCGGGTTAAGTCCCGTAGGC 1 -ATATCCGGGCTAAGACCCGAAGGC 193690863 CTTGGTGCGG Statistics Matches: 113, Mismatches: 26, Indels: 10 0.76 0.17 0.07 Matches are distributed among these distances: 37 4 0.04 38 2 0.02 39 3 0.03 40 104 0.92 ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22 Consensus pattern (39 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT Found at i:193690887 original size:80 final size:81 Alignment explanation
Indices: 193690719--193690907 Score: 186 Period size: 80 Copynumber: 2.4 Consensus size: 81 193690709 GCTGGAAATT * * * * 193690719 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA 1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA * 193690784 TTCGTGCGAGTCATTC 66 TTCGTGCGAGTCATCC * * * * * * 193690800 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC 1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC * * * * 193690863 CTTGGTGCGGGTTA-CC 65 ATTCGTGCGAGTCATCC * * * 193690879 ATAACCGGGCTATGTCCCGAAGGCGATTG 1 ATAACCGGGCTAAGACCCGAAGGCAATTG 193690908 ATCGAGTAGC Statistics Matches: 86, Mismatches: 20, Indels: 5 0.77 0.18 0.05 Matches are distributed among these distances: 79 2 0.02 80 84 0.98 ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23 Consensus pattern (81 bp): ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA TTCGTGCGAGTCATCC Found at i:193698960 original size:40 final size:39 Alignment explanation
Indices: 193698795--193698978 Score: 138 Period size: 40 Copynumber: 4.6 Consensus size: 39 193698785 AAATTGAATG * * * 193698795 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T 1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT * * * * * * 193698835 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T * * * * * 193698875 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT * 193698915 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT * * * 193698954 GATATCCGGGTTAAGTCCCGTAGGC 1 -ATATCCGGGCTAAGACCCGAAGGC 193698979 CTTGGTGCGG Statistics Matches: 113, Mismatches: 26, Indels: 10 0.76 0.17 0.07 Matches are distributed among these distances: 37 4 0.04 38 2 0.02 39 3 0.03 40 104 0.92 ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22 Consensus pattern (39 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT Found at i:193699003 original size:80 final size:81 Alignment explanation
Indices: 193698835--193699023 Score: 186 Period size: 80 Copynumber: 2.4 Consensus size: 81 193698825 GCTGGAAATT * * * * 193698835 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA 1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA * 193698900 TTCGTGCGAGTCATTC 66 TTCGTGCGAGTCATCC * * * * * * 193698916 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC 1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC * * * * 193698979 CTTGGTGCGGGTTA-CC 65 ATTCGTGCGAGTCATCC * * * 193698995 ATAACCGGGCTATGTCCCGAAGGCGATTG 1 ATAACCGGGCTAAGACCCGAAGGCAATTG 193699024 ATCGAGTAGC Statistics Matches: 86, Mismatches: 20, Indels: 5 0.77 0.18 0.05 Matches are distributed among these distances: 79 2 0.02 80 84 0.98 ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23 Consensus pattern (81 bp): ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA TTCGTGCGAGTCATCC Found at i:193708349 original size:78 final size:78 Alignment explanation
Indices: 193708241--193708536 Score: 452 Period size: 78 Copynumber: 3.8 Consensus size: 78 193708231 CGAAGAAACA * * 193708241 GATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA 1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA 193708306 GCAGATCCAAGAT 66 GCAGATCCAAGAT * * * * * 193708319 GATTTGGCATTTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTTATTGAA 1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA 193708384 GCAGATCCAAGAT 66 GCAGATCCAAGAT * * 193708397 GATTTGGCATCTCTATATTAGACTGG-GAGTAGATAGAAGACATAACAGAT-TGGACCTTCATTG 1 GATTTGGCATCTCTATATTAGAC-GGAGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTG 193708460 AAGCAGATCCAAGAT 64 AAGCAGATCCAAGAT * * * 193708475 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATT 1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATT 193708537 TGTTTACATC Statistics Matches: 196, Mismatches: 18, Indels: 8 0.88 0.08 0.04 Matches are distributed among these distances: 77 3 0.02 78 190 0.97 79 3 0.02 ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26 Consensus pattern (78 bp): GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA GCAGATCCAAGAT Found at i:193708697 original size:89 final size:89 Alignment explanation
Indices: 193708568--193708734 Score: 262 Period size: 89 Copynumber: 1.9 Consensus size: 89 193708558 AAGATGACAT * * 193708568 ATTTGGCATCTCTGTATTAGACGAGGAGCAAATTGGAGATAACAGATTTGGCATCTCTGTATTAG 1 ATTTGGCATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG 193708633 ACGGGGAGCAGATTGAAAAAGCAG 66 ACGGGGAGCAGATTGAAAAAGCAG * * * * ** 193708657 ATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAACAGATTTGGTGTCTCTGTATTAG 1 ATTTGGCATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG 193708722 ACGGGGAGCAGAT 66 ACGGGGAGCAGAT 193708735 CAAAGATAGC Statistics Matches: 70, Mismatches: 8, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 89 70 1.00 ACGTcount: A:0.29, C:0.13, G:0.30, T:0.28 Consensus pattern (89 bp): ATTTGGCATCTCTGTATTAGACGAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTAG ACGGGGAGCAGATTGAAAAAGCAG Found at i:193708735 original size:45 final size:45 Alignment explanation
Indices: 193708475--193708748 Score: 252 Period size: 45 Copynumber: 6.1 Consensus size: 45 193708465 GATCCAAGAT * * * 193708475 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCAAAGACATAGCA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA * * * * * * * * 193708522 GATCTGACCTTCATTTGT-TTACATC--GAAGCAGATCCAAGATGACA 1 GATTTG-GCATC-TCTGTATTAGA-CGGGGAGCAGATCGAAGATAACA * * * * * 193708567 TATTTGGCATCTCTGTATTAGACGAGGAGCAAATTGGAGATAACA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA * 193708612 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAA-A-AAGCA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAA-CA * * 193708656 GATTTGGCGTCTCTGTATTAGACGGGGAGTAGATCGAAGATAACA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA ** * * 193708701 GATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA 1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA 193708746 GAT 1 GAT 193708749 ATCGCCTTCC Statistics Matches: 185, Mismatches: 33, Indels: 20 0.78 0.14 0.08 Matches are distributed among these distances: 43 7 0.04 44 45 0.24 45 103 0.56 46 2 0.01 47 16 0.09 48 7 0.04 49 5 0.03 ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27 Consensus pattern (45 bp): GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA Found at i:193709118 original size:14 final size:15 Alignment explanation
Indices: 193709099--193709154 Score: 60 Period size: 18 Copynumber: 3.5 Consensus size: 15 193709089 AATCTTCAAT 193709099 GATATG-CAATCTTA 1 GATATGACAATCTTA 193709113 GATATGATACAATCTTA 1 GATATG--ACAATCTTA 193709130 GATATGATTGCAATCTTA 1 GATATGA---CAATCTTA 193709148 GATATGA 1 GATATGA 193709155 TATGCAATCT Statistics Matches: 36, Mismatches: 0, Indels: 8 0.82 0.00 0.18 Matches are distributed among these distances: 14 6 0.17 15 1 0.03 17 14 0.39 18 15 0.42 ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36 Consensus pattern (15 bp): GATATGACAATCTTA Found at i:193709143 original size:35 final size:37 Alignment explanation
Indices: 193709097--193709175 Score: 121 Period size: 35 Copynumber: 2.2 Consensus size: 37 193709087 ATAATCTTCA 193709097 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT 1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT 193709133 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA- 1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT 193709169 A-GATATG 1 ATGATATG 193709176 ATTTTATAAT Statistics Matches: 40, Mismatches: 0, Indels: 6 0.87 0.00 0.13 Matches are distributed among these distances: 35 22 0.55 36 8 0.20 37 10 0.25 ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35 Consensus pattern (37 bp): ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT Found at i:193709175 original size:17 final size:19 Alignment explanation
Indices: 193709097--193709168 Score: 123 Period size: 19 Copynumber: 3.9 Consensus size: 19 193709087 ATAATCTTCA 193709097 ATGATATGCAATCTTAGAT 1 ATGATATGCAATCTTAGAT 193709116 ATGATA--CAATCTTAGAT 1 ATGATATGCAATCTTAGAT 193709133 ATGAT-TGCAATCTTAGAT 1 ATGATATGCAATCTTAGAT 193709151 ATGATATGCAATCTTAGA 1 ATGATATGCAATCTTAGA 193709169 AGATATGATT Statistics Matches: 50, Mismatches: 0, Indels: 6 0.89 0.00 0.11 Matches are distributed among these distances: 17 16 0.32 18 16 0.32 19 18 0.36 ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36 Consensus pattern (19 bp): ATGATATGCAATCTTAGAT Found at i:193709479 original size:16 final size:17 Alignment explanation
Indices: 193709458--193709490 Score: 50 Period size: 16 Copynumber: 2.0 Consensus size: 17 193709448 TGTTTCCCTG * 193709458 ATTTTTTTAT-ATTTTA 1 ATTTTTTAATAATTTTA 193709474 ATTTTTTAATAATTTTA 1 ATTTTTTAATAATTTTA 193709491 GTATCATATC Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 16 9 0.60 17 6 0.40 ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70 Consensus pattern (17 bp): ATTTTTTAATAATTTTA Found at i:193720782 original size:24 final size:24 Alignment explanation
Indices: 193720755--193720873 Score: 202 Period size: 24 Copynumber: 4.8 Consensus size: 24 193720745 GCTGGAAATA 193720755 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC 193720779 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC 193720803 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC 193720827 TATGGCACTATGTGTGCGATTCTATGC 1 TATGGCACTATGTGTGCGATT-TA--C 193720854 TATGGCGACTATGTGTGCGA 1 TATGGC-ACTATGTGTGCGA 193720874 ACATAATAAG Statistics Matches: 91, Mismatches: 0, Indels: 4 0.96 0.00 0.04 Matches are distributed among these distances: 24 69 0.76 25 2 0.02 27 7 0.08 28 13 0.14 ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36 Consensus pattern (24 bp): TATGGCACTATGTGTGCGATTTAC Found at i:193720887 original size:52 final size:48 Alignment explanation
Indices: 193720755--193720895 Score: 158 Period size: 48 Copynumber: 2.9 Consensus size: 48 193720745 GCTGGAAATA ** * * 193720755 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTTAC ** * * 193720803 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCTATGC 1 TATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATT-TA--C 193720854 TATGGCGACTATGTGTGCGAACATAATA-AGCACTATGTGTGC 1 TATGGC-ACTATGTGTGCG-ACATAATATAGCACTATGTGTGC 193720896 CACATTCGGT Statistics Matches: 84, Mismatches: 4, Indels: 6 0.89 0.04 0.06 Matches are distributed among these distances: 48 45 0.54 49 2 0.02 51 7 0.08 52 25 0.30 53 5 0.06 ACGTcount: A:0.23, C:0.17, G:0.26, T:0.35 Consensus pattern (48 bp): TATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTTAC Found at i:193728735 original size:22 final size:24 Alignment explanation
Indices: 193728639--193728751 Score: 212 Period size: 24 Copynumber: 4.8 Consensus size: 24 193728629 GCTGGAAATA 193728639 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC 193728663 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC 193728687 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC 193728711 TATGGCACTATGTGTGCGA-TT-C 1 TATGGCACTATGTGTGCGATTTAC 193728733 TATGGCACTATGTGTGCGA 1 TATGGCACTATGTGTGCGA 193728752 ACATAATAAG Statistics Matches: 89, Mismatches: 0, Indels: 2 0.98 0.00 0.02 Matches are distributed among these distances: 22 20 0.22 23 2 0.02 24 67 0.75 ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36 Consensus pattern (24 bp): TATGGCACTATGTGTGCGATTTAC Found at i:193736546 original size:24 final size:24 Alignment explanation
Indices: 193736519--193736609 Score: 164 Period size: 24 Copynumber: 3.8 Consensus size: 24 193736509 GCTGGAAATA 193736519 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC 193736543 TATGGCACTATGTGTGCGATTTAC 1 TATGGCACTATGTGTGCGATTTAC ** 193736567 TATGGCACTATGTGTGCGATTCGC 1 TATGGCACTATGTGTGCGATTTAC 193736591 TATGGCACTATGTGTGCGA 1 TATGGCACTATGTGTGCGA 193736610 ACATAATAAG Statistics Matches: 65, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 24 65 1.00 ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35 Consensus pattern (24 bp): TATGGCACTATGTGTGCGATTTAC Found at i:193736623 original size:48 final size:48 Alignment explanation
Indices: 193736518--193736631 Score: 149 Period size: 48 Copynumber: 2.4 Consensus size: 48 193736508 TGCTGGAAAT * * ** 193736518 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTA 1 ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATA * * * 193736566 CTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATA 1 ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATA 193736615 ATA-AGCACTATGTGTGC 1 ATATAGCACTATGTGTGC 193736632 CACATTCGGT Statistics Matches: 58, Mismatches: 7, Indels: 2 0.87 0.10 0.03 Matches are distributed among these distances: 48 53 0.91 49 5 0.09 ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33 Consensus pattern (48 bp): ATATAGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATA Found at i:193739424 original size:40 final size:40 Alignment explanation
Indices: 193739358--193739524 Score: 169 Period size: 40 Copynumber: 4.2 Consensus size: 40 193739348 AAATTGAATG * * * 193739358 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * * *** 193739397 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * 193739437 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT 1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT * * ** * 193739477 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT 193739517 ATATCCGG 1 ATATCCGG 193739525 TTATATTCCG Statistics Matches: 105, Mismatches: 18, Indels: 9 0.80 0.14 0.07 Matches are distributed among these distances: 39 16 0.15 40 87 0.83 41 2 0.02 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT Found at i:193747429 original size:40 final size:40 Alignment explanation
Indices: 193747363--193747529 Score: 169 Period size: 40 Copynumber: 4.2 Consensus size: 40 193747353 AAATTGAATG * * * 193747363 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * * *** 193747402 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT * 193747442 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT 1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT * * ** * 193747482 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT 1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT 193747522 ATATCCGG 1 ATATCCGG 193747530 TTATATTCCG Statistics Matches: 105, Mismatches: 18, Indels: 9 0.80 0.14 0.07 Matches are distributed among these distances: 39 16 0.15 40 87 0.83 41 2 0.02 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT Found at i:193756467 original size:46 final size:46 Alignment explanation
Indices: 193756415--193756542 Score: 175 Period size: 46 Copynumber: 2.8 Consensus size: 46 193756405 GGTTGAGCAT * * * 193756415 CCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGT 1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC * * 193756461 CTGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC 1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC * * * * 193756507 CCGAGCTCATTGAGTTGAGTCTGAGTTCGCTTATGG 1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 193756543 GCGGGTTACA Statistics Matches: 71, Mismatches: 11, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 46 71 1.00 ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31 Consensus pattern (46 bp): CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC Found at i:193762523 original size:40 final size:39 Alignment explanation
Indices: 193762429--193762536 Score: 121 Period size: 40 Copynumber: 2.7 Consensus size: 39 193762419 ATAATCAAGT * * 193762429 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA * * 193762469 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAG-AACAACTA * 193762509 GCACAATTGTCTTCGGG-CTTAGCCCGGA 1 GCACAA-TGCCTTCGGGTCTTAGCCCGGA 193762537 CATCATTCAA Statistics Matches: 60, Mismatches: 6, Indels: 5 0.85 0.08 0.07 Matches are distributed among these distances: 39 14 0.23 40 46 0.77 ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23 Consensus pattern (39 bp): GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA Found at i:193763384 original size:17 final size:19 Alignment explanation
Indices: 193763361--193763406 Score: 53 Period size: 17 Copynumber: 2.5 Consensus size: 19 193763351 AAGAAGCATG 193763361 AATCATGCTCAAGAATG-C 1 AATCATGCTCAAGAATGAC * 193763379 -ATCATGGC-CAAGTATGAC 1 AATCAT-GCTCAAGAATGAC 193763397 AATCATGCTC 1 AATCATGCTC 193763407 CTTTTCAACT Statistics Matches: 23, Mismatches: 1, Indels: 7 0.74 0.03 0.23 Matches are distributed among these distances: 17 12 0.52 18 5 0.22 19 6 0.26 ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24 Consensus pattern (19 bp): AATCATGCTCAAGAATGAC Found at i:193770417 original size:40 final size:40 Alignment explanation
Indices: 193770372--193770498 Score: 150 Period size: 40 Copynumber: 3.2 Consensus size: 40 193770362 CGGAATATAA 193770372 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC * * * * 193770412 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC * ** * * 193770452 CCGGATGTAGCCACTAGCACAATTGTCTTCGGG-CTTAGC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC 193770491 CCGGATAT 1 CCGGATAT 193770499 CATTCAATTT Statistics Matches: 73, Mismatches: 13, Indels: 3 0.82 0.15 0.03 Matches are distributed among these distances: 39 14 0.19 40 59 0.81 ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24 Consensus pattern (40 bp): CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC Found at i:193771343 original size:17 final size:19 Alignment explanation
Indices: 193771320--193771365 Score: 53 Period size: 17 Copynumber: 2.5 Consensus size: 19 193771310 AAGAAGCATG 193771320 AATCATGCTCAAGAATG-C 1 AATCATGCTCAAGAATGAC * 193771338 -ATCATGGC-CAAGTATGAC 1 AATCAT-GCTCAAGAATGAC 193771356 AATCATGCTC 1 AATCATGCTC 193771366 CTTTTCAACT Statistics Matches: 23, Mismatches: 1, Indels: 7 0.74 0.03 0.23 Matches are distributed among these distances: 17 12 0.52 18 5 0.22 19 6 0.26 ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24 Consensus pattern (19 bp): AATCATGCTCAAGAATGAC Found at i:193781194 original size:21 final size:22 Alignment explanation
Indices: 193781154--193781199 Score: 76 Period size: 21 Copynumber: 2.1 Consensus size: 22 193781144 TACACAGCCG 193781154 TGTGCCTCCTCTCACATGGGCA 1 TGTGCCTCCTCTCACATGGGCA * 193781176 TGTGCCTCCT-TCACTTGGGCA 1 TGTGCCTCCTCTCACATGGGCA 193781197 TGT 1 TGT 193781200 TTCGGAATTA Statistics Matches: 23, Mismatches: 1, Indels: 1 0.92 0.04 0.04 Matches are distributed among these distances: 21 13 0.57 22 10 0.43 ACGTcount: A:0.11, C:0.33, G:0.24, T:0.33 Consensus pattern (22 bp): TGTGCCTCCTCTCACATGGGCA Found at i:193782613 original size:10 final size:10 Alignment explanation
Indices: 193782598--193782626 Score: 58 Period size: 10 Copynumber: 2.9 Consensus size: 10 193782588 AAATCTAGAG 193782598 TTTTCTTCAA 1 TTTTCTTCAA 193782608 TTTTCTTCAA 1 TTTTCTTCAA 193782618 TTTTCTTCA 1 TTTTCTTCA 193782627 TCTTCTCCAG Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 19 1.00 ACGTcount: A:0.17, C:0.21, G:0.00, T:0.62 Consensus pattern (10 bp): TTTTCTTCAA Found at i:193783512 original size:52 final size:52 Alignment explanation
Indices: 193783434--193783633 Score: 182 Period size: 52 Copynumber: 3.9 Consensus size: 52 193783424 GACGGAAAAG * * * * 193783434 ATGTGATATATGATTCGGTATAAGACCATAGCCGGGCTATGGCATCGGTACA 1 ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGTACA * * *** 193783486 ATGTGAT-TCGTG-TTCCCGTATAAGACCATAGCTAGGTTATGGCATCGGTGTG 1 ATGTGATAT-GTGATT-CCGTATAAGACCATAGCTGGGATATGGCATCGGTACA * 193783538 ATGTGATAATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCGGT--- 1 ATGTGAT-ATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGTACA * * * * * 193783588 A--TGATATGTGA-TCCGTGTAAGACCATGGCAGGGCTATGGCTTCGGT 1 ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGT 193783634 GTGTGATGTG Statistics Matches: 126, Mismatches: 17, Indels: 16 0.79 0.11 0.10 Matches are distributed among these distances: 46 29 0.23 47 6 0.05 48 4 0.03 50 1 0.01 51 3 0.02 52 46 0.37 53 34 0.27 54 3 0.02 ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30 Consensus pattern (52 bp): ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGTACA Found at i:193783580 original size:53 final size:52 Alignment explanation
Indices: 193783433--193783592 Score: 189 Period size: 52 Copynumber: 3.1 Consensus size: 52 193783423 TGACGGAAAA * * * * * 193783433 GATGTGATATATGATTCGGTATAAGACCATAGCCGGGCTATGGCATCGGTAC 1 GATGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGTAT * * * * 193783485 AATGTGAT-TCGTG-TTCCCGTATAAGACCATAGCTAGGTTATGGCATCGGTGT 1 GATGTGATAT-GTGATT-CCGTATAAGACCATAGCTGGGATATGGCATCGGTAT * 193783537 GATGTGATAATGTGATTCCGTATAAGACCATATCTGGGATATGGCATCGGTAT 1 GATGTGAT-ATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGTAT 193783590 GAT 1 GAT 193783593 ATGTGATCCG Statistics Matches: 90, Mismatches: 13, Indels: 9 0.80 0.12 0.08 Matches are distributed among these distances: 51 3 0.03 52 46 0.51 53 38 0.42 54 3 0.03 ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31 Consensus pattern (52 bp): GATGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGTAT Found at i:193789978 original size:10 final size:10 Alignment explanation
Indices: 193789963--193789991 Score: 58 Period size: 10 Copynumber: 2.9 Consensus size: 10 193789953 AAATCTAGAG 193789963 TTTTCTTCAA 1 TTTTCTTCAA 193789973 TTTTCTTCAA 1 TTTTCTTCAA 193789983 TTTTCTTCA 1 TTTTCTTCA 193789992 TCTTCTCCAG Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 19 1.00 ACGTcount: A:0.17, C:0.21, G:0.00, T:0.62 Consensus pattern (10 bp): TTTTCTTCAA Found at i:193790909 original size:52 final size:52 Alignment explanation
Indices: 193790801--193790953 Score: 157 Period size: 52 Copynumber: 2.9 Consensus size: 52 193790791 GACGAAAAAG * * ** * * 193790801 ATGTGATATATGATTCGGTATAAGACCATAGCCAGGCTATGGCATCGGTACA 1 ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGCACA * *** 193790853 ATGTGAT-TCGTG-TTCCCGTATAAGACCATAGCTGGGTTATGGCATCGGCGTG 1 ATGTGATAT-GTGATT-CCGTATAAGACCATAGCTGGGATATGGCATCGGCACA * * 193790905 ATGTGATAATGTGATTCTGTATAAGACCATATCTGGGATATGGCATCGG 1 ATGTGAT-ATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGG 193790954 TATGTGATCC Statistics Matches: 84, Mismatches: 12, Indels: 9 0.80 0.11 0.09 Matches are distributed among these distances: 51 3 0.04 52 45 0.54 53 33 0.39 54 3 0.04 ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30 Consensus pattern (52 bp): ATGTGATATGTGATTCCGTATAAGACCATAGCTGGGATATGGCATCGGCACA Found at i:193791771 original size:20 final size:20 Alignment explanation
Indices: 193791746--193791798 Score: 88 Period size: 20 Copynumber: 2.6 Consensus size: 20 193791736 TGCACATGGG 193791746 CAGGCCACACGGGCATGTTC 1 CAGGCCACACGGGCATGTTC * * 193791766 CAGGCCACACGGACGTGTTC 1 CAGGCCACACGGGCATGTTC 193791786 CAGGCCACACGGG 1 CAGGCCACACGGG 193791799 TGTAATATCC Statistics Matches: 30, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 20 30 1.00 ACGTcount: A:0.21, C:0.36, G:0.32, T:0.11 Consensus pattern (20 bp): CAGGCCACACGGGCATGTTC Found at i:193792768 original size:46 final size:46 Alignment explanation
Indices: 193792622--193792791 Score: 204 Period size: 46 Copynumber: 3.7 Consensus size: 46 193792612 GGTTGAGCAT * * 193792622 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATGT 1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC * * * * * * 193792667 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTA-AC-TAGGC 1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGCGAACGC 193792711 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC 1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC * 193792759 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA 1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA 193792792 GGGGCGGGTT Statistics Matches: 104, Mismatches: 14, Indels: 13 0.79 0.11 0.10 Matches are distributed among these distances: 44 2 0.02 45 29 0.28 46 68 0.65 47 2 0.02 48 3 0.03 ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28 Consensus pattern (46 bp): CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC Found at i:193792786 original size:92 final size:91 Alignment explanation
Indices: 193792618--193792786 Score: 302 Period size: 92 Copynumber: 1.8 Consensus size: 91 193792608 GGATGGTTGA * * 193792618 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT 193792683 GAGTCCGAGTTCGTGAATGTAACTAG 66 GAGTCCGAGTTCGTGAATGTAACTAG * 193792709 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT 1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCGTTGAGT 193792774 TGAGTCCGAGTTC 65 TGAGTCCGAGTTC 193792787 ACTTAGGGGC Statistics Matches: 74, Mismatches: 3, Indels: 1 0.95 0.04 0.01 Matches are distributed among these distances: 91 34 0.46 92 40 0.54 ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28 Consensus pattern (91 bp): GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT GAGTCCGAGTTCGTGAATGTAACTAG Found at i:193800632 original size:37 final size:37 Alignment explanation
Indices: 193800573--193800681 Score: 191 Period size: 37 Copynumber: 2.9 Consensus size: 37 193800563 AGCTCAGATG * * 193800573 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA 193800610 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA * 193800647 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA 193800682 ATATATTTCC Statistics Matches: 69, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 37 69 1.00 ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23 Consensus pattern (37 bp): AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA Found at i:193800886 original size:48 final size:48 Alignment explanation
Indices: 193800822--193801649 Score: 1390 Period size: 48 Copynumber: 17.0 Consensus size: 48 193800812 ATATACACAC * * 193800822 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT * * * 193800870 ATCTCATGCATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT * * 193800918 ATCTCATATATATATTTCACATTAACCATTCGGCTTTACCACATATACAT 1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT * 193800968 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCATATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 193801016 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT * 193801064 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT * 193801114 ATCTCAT--ATATTTCACATTAACCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 193801160 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT * 193801208 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT * 193801258 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT * 193801306 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 193801356 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT * 193801404 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT * 193801454 ATCTCATACATATTTCACATTAACCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 193801502 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT * 193801550 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 193801600 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT 193801648 AT 1 AT 193801650 ATTTATCTTG Statistics Matches: 739, Mismatches: 27, Indels: 28 0.93 0.03 0.04 Matches are distributed among these distances: 46 45 0.06 48 417 0.56 50 277 0.37 ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36 Consensus pattern (48 bp): ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT Found at i:193800983 original size:146 final size:146 Alignment explanation
Indices: 193800822--193801649 Score: 1425 Period size: 146 Copynumber: 5.7 Consensus size: 146 193800812 ATATACACAC * * * * 193800822 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATGCATGTTTCA 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA * * 193800887 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGC 66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC 193800952 TTTACCACATATACAT 131 TTTACCACATATACAT * 193800968 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCATATATACATATCTCATACATATTTCA 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA 193801033 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC 66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC 193801098 TTTACCACATATACAT 131 TTTACCACATATACAT * 193801114 ATCTCAT--ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCA 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA 193801177 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC 66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC 193801242 TTTACCACATATACAT 131 TTTACCACATATACAT * * 193801258 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATATATATATTT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT * 193801323 CACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCG 64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG 193801386 GCTTTACCACATATACAT 129 GCTTTACCACATATACAT * 193801404 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT 1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT * * 193801469 CACATTAACCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCG 64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG 193801532 GCTTTACCACATATACAT 129 GCTTTACCACATATACAT * 193801550 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT 1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT 193801615 CACATTAGCCATTCGGCTTTACCACATATACATAT 64 CACATTAGCCATTCGGCTTTACCACATATACATAT 193801650 ATTTATCTTG Statistics Matches: 658, Mismatches: 18, Indels: 12 0.96 0.03 0.02 Matches are distributed among these distances: 144 142 0.22 146 423 0.64 148 93 0.14 ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36 Consensus pattern (146 bp): ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA CATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC TTTACCACATATACAT Found at i:193800984 original size:98 final size:96 Alignment explanation
Indices: 193800822--193801649 Score: 1390 Period size: 98 Copynumber: 8.5 Consensus size: 96 193800812 ATATACACAC * * * * * 193800822 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATGCATGTTTCA 1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA * 193800887 CACTAGCCATTCGGCTTTACCACATATACAT 66 CATTAGCCATTCGGCTTTACCACATATACAT * 193800918 ATCTCATATATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTT 1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT * 193800983 CACATTAGCCATTCGGCTTTACCATATATACAT 64 CACATTAGCCATTCGGCTTTACCACATATACAT * * 193801016 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT 1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT 193801081 CACATTAGCCATTCGGCTTTACCACATATACAT 64 CACATTAGCCATTCGGCTTTACCACATATACAT * 193801114 ATCTC--ATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCA 1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA 193801177 CATTAGCCATTCGGCTTTACCACATATACAT 66 CATTAGCCATTCGGCTTTACCACATATACAT 193801208 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT 1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT * 193801273 CACATTAGCCATTCAGCTTTACCACATATACAT 64 CACATTAGCCATTCGGCTTTACCACATATACAT 193801306 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT 1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT 193801371 CACATTAGCCATTCGGCTTTACCACATATACAT 64 CACATTAGCCATTCGGCTTTACCACATATACAT 193801404 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT 1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT * 193801469 CACATTAACCATTCGGCTTTACCACATATACAT 64 CACATTAGCCATTCGGCTTTACCACATATACAT * * 193801502 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT 1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT 193801567 CACATTAGCCATTCGGCTTTACCACATATACAT 64 CACATTAGCCATTCGGCTTTACCACATATACAT * 193801600 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT 1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT 193801650 ATTTATCTTG Statistics Matches: 700, Mismatches: 22, Indels: 18 0.95 0.03 0.02 Matches are distributed among these distances: 94 47 0.07 96 142 0.20 98 511 0.73 ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36 Consensus pattern (96 bp): ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA CATTAGCCATTCGGCTTTACCACATATACAT Found at i:193834529 original size:93 final size:93 Alignment explanation
Indices: 193834370--193834541 Score: 272 Period size: 93 Copynumber: 1.8 Consensus size: 93 193834360 CGCCCATAAG * * * * * * 193834370 CGAACTCAGACTCAACTCAAGGAGCTCGGGCGTTTGCATCCATAGGTGAACTCGGACTCAACTCA 1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 193834435 ACGAGTTCGGATGCCTAGTTACATTTCA 66 ACGAGTTCGGATGCCTAGTTACATTTCA * * 193834463 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA 193834528 ACGAGTTCGGATGC 66 ACGAGTTCGGATGC 193834542 TCAACCATCC Statistics Matches: 71, Mismatches: 8, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 93 71 1.00 ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22 Consensus pattern (93 bp): CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA ACGAGTTCGGATGCCTAGTTACATTTCA Found at i:193834531 original size:46 final size:45 Alignment explanation
Indices: 193834363--193834535 Score: 145 Period size: 46 Copynumber: 3.8 Consensus size: 45 193834353 TGTAACCCGC * * * * * * 193834363 CCATAAGCGAACTCAGACTCAACTCAAGGAGCTCGGGCGTTTGCAT 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGAC-ATTGCAT * * * * 193834409 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GAC-A-TTGCAT * * 193834459 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATT-GCAT * 193834502 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC 1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC 193834536 GGATGCTCAA Statistics Matches: 100, Mismatches: 19, Indels: 16 0.74 0.14 0.12 Matches are distributed among these distances: 42 2 0.02 43 4 0.04 44 2 0.02 45 3 0.03 46 55 0.55 47 26 0.26 48 1 0.01 49 2 0.02 50 5 0.05 ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22 Consensus pattern (45 bp): CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTGCAT Found at i:193834557 original size:46 final size:44 Alignment explanation
Indices: 193834415--193834557 Score: 121 Period size: 46 Copynumber: 3.1 Consensus size: 44 193834405 GCATCCATAG * 193834415 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTTCA 1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-A * * * * * 193834463 -CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT-AA 1 GTGAACTCGGACTCAACTCAACGAGTTC-G-GATGC-CAACCATCTA 193834508 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTA 1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTA 193834554 GTGA 1 GTGA 193834558 CATGTCACTT Statistics Matches: 77, Mismatches: 11, Indels: 16 0.74 0.11 0.15 Matches are distributed among these distances: 44 9 0.12 45 2 0.03 46 31 0.40 47 29 0.38 48 1 0.01 49 4 0.05 50 1 0.01 ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23 Consensus pattern (44 bp): GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTA Found at i:193836979 original size:15 final size:15 Alignment explanation
Indices: 193836924--193837001 Score: 74 Period size: 15 Copynumber: 5.4 Consensus size: 15 193836914 CAAAGATAAC * 193836924 AAGAAAACC-GAATA 1 AAGAAATCCAGAATA 193836938 AAGAAATCCA-AGAT- 1 AAGAAATCCAGA-ATA * * 193836952 -AGAAAACCCGAATA 1 AAGAAATCCAGAATA 193836966 AAGAAATCCAGAATA 1 AAGAAATCCAGAATA * * 193836981 AAGAGATCCAGGATA 1 AAGAAATCCAGAATA 193836996 AAGAAA 1 AAGAAA 193837002 CCCAAGATAC Statistics Matches: 51, Mismatches: 8, Indels: 9 0.75 0.12 0.13 Matches are distributed among these distances: 13 9 0.18 14 10 0.20 15 32 0.63 ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10 Consensus pattern (15 bp): AAGAAATCCAGAATA Found at i:193837010 original size:15 final size:15 Alignment explanation
Indices: 193836935--193837010 Score: 68 Period size: 15 Copynumber: 5.2 Consensus size: 15 193836925 AGAAAACCGA 193836935 ATAAAGAAATCCAAG 1 ATAAAGAAATCCAAG * * * 193836950 ATAGA-AAACCCGA- 1 ATAAAGAAATCCAAG 193836963 ATAAAGAAATCC-AG 1 ATAAAGAAATCCAAG * * 193836977 AATAAAGAGATCCAGG 1 -ATAAAGAAATCCAAG * 193836993 ATAAAGAAACCCAAG 1 ATAAAGAAATCCAAG 193837008 ATA 1 ATA 193837011 CGATACTATG Statistics Matches: 47, Mismatches: 10, Indels: 8 0.72 0.15 0.12 Matches are distributed among these distances: 13 5 0.11 14 11 0.23 15 30 0.64 16 1 0.02 ACGTcount: A:0.57, C:0.16, G:0.16, T:0.12 Consensus pattern (15 bp): ATAAAGAAATCCAAG Found at i:193839972 original size:44 final size:46 Alignment explanation
Indices: 193839908--193840034 Score: 213 Period size: 44 Copynumber: 2.8 Consensus size: 46 193839898 TGTAACCCGC * * * 193839908 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTT-GCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 193839953 CCAT-AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT 193839998 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 193840035 TGCTCAACCA Statistics Matches: 77, Mismatches: 3, Indels: 3 0.93 0.04 0.04 Matches are distributed among these distances: 44 33 0.43 45 12 0.16 46 32 0.42 ACGTcount: A:0.29, C:0.28, G:0.22, T:0.20 Consensus pattern (46 bp): CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT Found at i:193840053 original size:46 final size:46 Alignment explanation
Indices: 193839913--193840053 Score: 150 Period size: 44 Copynumber: 3.1 Consensus size: 46 193839903 CCCGCCCATA * * 193839913 AGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGT--TGCATCCAT 1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TCATCCATCC-T * * * 193839957 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A 1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCATCCATCCT * 193840003 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT 1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCCATCCT 193840049 AGTGA 1 AGTGA 193840054 CATGTCACTT Statistics Matches: 80, Mismatches: 9, Indels: 14 0.78 0.09 0.14 Matches are distributed among these distances: 44 39 0.49 46 36 0.45 48 1 0.01 49 4 0.05 ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21 Consensus pattern (46 bp): AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCCATCCT Found at i:193845830 original size:49 final size:49 Alignment explanation
Indices: 193845770--193846119 Score: 527 Period size: 49 Copynumber: 7.3 Consensus size: 49 193845760 GTATGAGATA 193845770 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG 1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG * 193845819 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTA 1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG 193845866 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG 1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG 193845915 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG 1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG * * * 193845964 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTGTA 1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG * 193846013 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTG 1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG * * * * * * * 193846060 --TATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--GTG 1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG * 193846105 TATAAATGTGATAAG 1 TATATATGTGATAAG 193846120 TCCCGAAGGG Statistics Matches: 280, Mismatches: 17, Indels: 10 0.91 0.06 0.03 Matches are distributed among these distances: 45 39 0.14 47 59 0.21 49 182 0.65 ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29 Consensus pattern (49 bp): TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG Found at i:193845874 original size:96 final size:96 Alignment explanation
Indices: 193845768--193846119 Score: 532 Period size: 96 Copynumber: 3.7 Consensus size: 96 193845758 ATGTATGAGA 193845768 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA 1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA 193845833 GGCCTAATGGCCGATGTGATGAATGTGAAAG 66 GGCCTAATGGCCGATGTGATGAATGTGAAAG 193845864 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA 1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA 193845929 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG 66 GGCCTAATGGCCGATGTGATGAATGTGAAA--G * * * * 193845962 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTGTATATATATGTGATAA 1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA * 193846027 GGCCTAATGGCCAATGTGATGAATGTGAAAG 66 GGCCTAATGGCCGATGTGATGAATGTGAAAG * * * * * * * * * 193846058 --TGTATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--GTGTATAAATGTGATAA 1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA 193846119 G 66 G 193846120 TCCCGAAGGG Statistics Matches: 237, Mismatches: 17, Indels: 8 0.90 0.06 0.03 Matches are distributed among these distances: 92 16 0.07 94 34 0.14 96 96 0.41 98 91 0.38 ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30 Consensus pattern (96 bp): TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA GGCCTAATGGCCGATGTGATGAATGTGAAAG Found at i:193846016 original size:145 final size:144 Alignment explanation
Indices: 193845770--193846119 Score: 530 Period size: 145 Copynumber: 2.4 Consensus size: 144 193845760 GTATGAGATA 193845770 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG 1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG * * 193845835 CCTAATGGCCGATGTGATGAATGTGAAAGT-ATATATATGTGATAAGGCCTAATGGCCGATGTGA 66 CCTAATGGCCGATGTGATGAATGAGAAAGTAATATATATGTGATAAGGCCTAATGGCCAATGTGA 193845899 TGAATGTGAAAGTGTG 131 TGAATGTGAAA--GTG 193845915 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG 1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG * * 193845980 CCTAATGGCCGATGTGATGAATGAGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGTG 66 CCTAATGGCCGATGTGATGAATGAGAAAGT-AATATATATGTGATAAGGCCTAATGGCCAATGTG 193846045 ATGAATGTGAAAGTG 130 ATGAATGTGAAAGTG * * * * * * * * 193846060 --TATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--GTGTATAAATGTGATAAG 1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAG 193846120 TCCCGAAGGG Statistics Matches: 192, Mismatches: 11, Indels: 8 0.91 0.05 0.04 Matches are distributed among these distances: 141 17 0.09 143 35 0.18 145 96 0.50 147 44 0.23 ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29 Consensus pattern (144 bp): TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG CCTAATGGCCGATGTGATGAATGAGAAAGTAATATATATGTGATAAGGCCTAATGGCCAATGTGA TGAATGTGAAAGTG Found at i:193854857 original size:40 final size:40 Alignment explanation
Indices: 193854767--193854985 Score: 227 Period size: 40 Copynumber: 5.5 Consensus size: 40 193854757 CTCAAGTAAT * * * * 193854767 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC 1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC * * * 193854805 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGC 1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC * 193854845 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC 1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC * * * 193854885 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC 1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC * * * 193854925 CTTC--GATCTTAG-TCGGTTATAGTCACCTAGCACAAAAGC 1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC 193854964 CTTCGGGACTTAGCCCGGATAT 1 CTTCGGGACTTAGCCCGGATAT 193854986 CATTCGAATA Statistics Matches: 148, Mismatches: 23, Indels: 17 0.79 0.12 0.09 Matches are distributed among these distances: 38 21 0.14 39 36 0.24 40 83 0.56 41 8 0.05 ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25 Consensus pattern (40 bp): CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC Found at i:193854977 original size:119 final size:118 Alignment explanation
Indices: 193854767--193854985 Score: 291 Period size: 119 Copynumber: 1.8 Consensus size: 118 193854757 CTCAAGTAAT * * * * 193854767 CTTCGGGATTTAGCCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTCA 1 CTTCGGGATTTAGCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCA * * 193854832 CTAGCACAGATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC 66 CTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC * * * * 193854885 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTC-GATCTTAG-TCGGTTATAG 1 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCAC-AAGGCCTTCGGATCTTAGCCCGGATATAG 193854947 TCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT 63 TCA-CTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT 193854986 CATTCGAATA Statistics Matches: 87, Mismatches: 10, Indels: 7 0.84 0.10 0.07 Matches are distributed among these distances: 117 1 0.01 118 21 0.24 119 57 0.66 120 8 0.09 ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25 Consensus pattern (118 bp): CTTCGGGATTTAGCCGGATATAACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCA CTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC Found at i:193854980 original size:79 final size:79 Alignment explanation
Indices: 193854803--193854985 Score: 230 Period size: 79 Copynumber: 2.3 Consensus size: 79 193854793 CTTGCACAAG * 193854803 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGCCTTCGGGACTTAGCCCGGATATA 1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAGATGCCTTC-GGACTTAGCCCGGATATA * * 193854868 GTCGCTAGCACAAAT 65 GTCCCTAGCACAAAA * * * 193854883 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCAC-GAATGCCTTC-GATCTTAG-TCGGTTA 1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAG-ATGCCTTCGGA-CTTAGCCCGGATA 193854944 TAGTCACCTAGCACAAAA 63 TAGTC-CCTAGCACAAAA * 193854962 GCCTTCGGGACTTAGCCCGGATAT 1 GCCTTCGGGTCTTAGCCCGGATAT 193854986 CATTCGAATA Statistics Matches: 92, Mismatches: 7, Indels: 9 0.85 0.06 0.08 Matches are distributed among these distances: 78 12 0.13 79 40 0.43 80 40 0.43 ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25 Consensus pattern (79 bp): GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAGATGCCTTCGGACTTAGCCCGGATATAG TCCCTAGCACAAAA Found at i:193855704 original size:2 final size:2 Alignment explanation
Indices: 193855697--193855722 Score: 52 Period size: 2 Copynumber: 13.0 Consensus size: 2 193855687 ATGTGCAAAC 193855697 AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT 193855723 GTGCAAGAGC Statistics Matches: 24, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 24 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:193858430 original size:29 final size:29 Alignment explanation
Indices: 193858396--193858498 Score: 154 Period size: 29 Copynumber: 3.6 Consensus size: 29 193858386 TAATCAGCCG ** * 193858396 CGCACACTTAGTGCCATATACTTT-AAACT 1 CGCACACTTAGTGCCATGCA-TTTCAAGCT 193858425 CGCACACTTAGTGCCATGCATTTCAAGCT 1 CGCACACTTAGTGCCATGCATTTCAAGCT 193858454 CGCACACTTAGTGCCATGCATTTCAAGCT 1 CGCACACTTAGTGCCATGCATTTCAAGCT * 193858483 CGCACACTCAGTGCCA 1 CGCACACTTAGTGCCA 193858499 ATCTCTCAAC Statistics Matches: 69, Mismatches: 4, Indels: 2 0.92 0.05 0.03 Matches are distributed among these distances: 28 3 0.04 29 66 0.96 ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26 Consensus pattern (29 bp): CGCACACTTAGTGCCATGCATTTCAAGCT Found at i:193865239 original size:79 final size:82 Alignment explanation
Indices: 193865099--193865283 Score: 229 Period size: 79 Copynumber: 2.3 Consensus size: 82 193865089 TCGAATGATG * * * 193865099 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT * 193865163 CGTGCGAGTTAATA-AA 66 CGTGCGAGTCAATATAA * ** 193865179 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT * 193865241 TCGTGCGAGTCACTATAA 65 TCGTGCGAGTCAATATAA ** 193865259 -CCGGGCTTCGTCCCGAAGGCATTTG 1 TCCGGGCTAAGTCCCGAAGGCATTTG 193865284 AGCGAGTCGT Statistics Matches: 91, Mismatches: 10, Indels: 8 0.83 0.09 0.07 Matches are distributed among these distances: 78 1 0.01 79 56 0.62 80 34 0.37 ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24 Consensus pattern (82 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT CGTGCGAGTCAATATAA Found at i:193865291 original size:40 final size:40 Alignment explanation
Indices: 193865100--193865291 Score: 151 Period size: 40 Copynumber: 4.8 Consensus size: 40 193865090 CGAATGATGT * * * * * 193865100 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT 1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC ** * * * * * 193865140 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT 1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC * * * 193865180 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC 1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC * 193865219 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA- 1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC * * 193865259 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC 1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC 193865292 GTTATATCCG Statistics Matches: 126, Mismatches: 20, Indels: 12 0.80 0.13 0.08 Matches are distributed among these distances: 39 33 0.26 40 82 0.65 41 11 0.09 ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23 Consensus pattern (40 bp): CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC Found at i:193865314 original size:79 final size:79 Alignment explanation
Indices: 193865099--193865316 Score: 183 Period size: 79 Copynumber: 2.7 Consensus size: 79 193865089 TCGAATGATG * * * * ** * 193865099 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT 1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT * 193865162 TCGTGCGAGTTAATAAA 63 TCGTGCGAGTCAATAAA * * * * 193865179 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG 1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG * 193865244 TGCGAGTCACTATAA 66 TGCGAGTCAATA-AA ** * ** * * 193865259 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG 1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG 193865317 TACGTGATTC Statistics Matches: 113, Mismatches: 21, Indels: 9 0.79 0.15 0.06 Matches are distributed among these distances: 79 69 0.61 80 44 0.39 ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24 Consensus pattern (79 bp): TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG TGCGAGTCAATAAA Found at i:193875155 original size:29 final size:29 Alignment explanation
Indices: 193875123--193875200 Score: 93 Period size: 29 Copynumber: 2.7 Consensus size: 29 193875113 ATACCCTTCG * * * 193875123 AGCACGCACACCCAGTGCCGTATTTTTCC 1 AGCATGCACACCCAGTGCCATATATTTCC ** 193875152 AGCATGCACACTTAGTGCCATATATTTCC 1 AGCATGCACACCCAGTGCCATATATTTCC ** 193875181 AGCATGCACACTTAGTGCCA 1 AGCATGCACACCCAGTGCCA 193875201 ATCTCGTCAC Statistics Matches: 44, Mismatches: 5, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 29 44 1.00 ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26 Consensus pattern (29 bp): AGCATGCACACCCAGTGCCATATATTTCC Found at i:193876413 original size:24 final size:24 Alignment explanation
Indices: 193876372--193876427 Score: 69 Period size: 24 Copynumber: 2.3 Consensus size: 24 193876362 TTTTTTTCCT 193876372 TTTCTTTGTTTTTCTTCATATTCTC 1 TTTCTTTGTTTTTCTTCAT-TTCTC * * 193876397 TTTCTTT-TTTTTTTTCATTTCTT 1 TTTCTTTGTTTTTCTTCATTTCTC 193876420 TATTCTTT 1 T-TTCTTT 193876428 CTACATAATC Statistics Matches: 28, Mismatches: 2, Indels: 3 0.85 0.06 0.09 Matches are distributed among these distances: 23 5 0.18 24 16 0.57 25 7 0.25 ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75 Consensus pattern (24 bp): TTTCTTTGTTTTTCTTCATTTCTC Done.