Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 619 of 770
Found at i:193879283 original size:15 final size:15
Alignment explanation
Indices: 193879244--193879322 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
193879234 GTATCTTGGG
*
193879244 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
193879259 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
193879274 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
193879288 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
193879303 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
193879317 TTTCTT
1 TTTCTT
193879323 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:193879307 original size:29 final size:29
Alignment explanation
Indices: 193879235--193879321 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
193879225 CATAGTATCG
* * * *
193879235 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
193879265 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
193879294 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
193879322 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:193881753 original size:46 final size:46
Alignment explanation
Indices: 193881698--193881878 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
193881688 TAGGATGGTT
193881698 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
193881744 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
193881790 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
193881837 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
193881879 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:193881859 original size:93 final size:93
Alignment explanation
Indices: 193881700--193881870 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
193881690 GGATGGTTGA
* *
193881700 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
193881765 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
193881793 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
193881858 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
193881871 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:193885441 original size:38 final size:40
Alignment explanation
Indices: 193885329--193885512 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
193885319 TCGAATGATG
* *
193885329 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
193885369 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
193885409 TCTGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
193885447 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
193885488 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
193885513 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 23 0.19
39 18 0.15
40 70 0.58
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:193885494 original size:78 final size:80
Alignment explanation
Indices: 193885330--193885509 Score: 215
Period size: 78 Copynumber: 2.3 Consensus size: 80
193885320 CGAATGATGT
* * *
193885330 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCTGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
*
193885395 TGCGAGTTACTAATT
66 TGCGAGTTACTAATA
* * * * **
193885410 CTGGGCTAAG-CCCGAAGGCATGGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
193885472 GTGCGAGTTACT-ATAA
65 GTGCGAGTTACTAAT-A
*
193885488 CCGGGCTATGTCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCAT
193885510 TTGAACGAGT
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
77 3 0.04
78 48 0.56
79 25 0.29
80 9 0.11
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAATA
Found at i:193890797 original size:40 final size:40
Alignment explanation
Indices: 193890742--193890859 Score: 200
Period size: 40 Copynumber: 3.0 Consensus size: 40
193890732 GGAAAAAAAA
193890742 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
193890782 TATAACTGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
193890822 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
193890860 GTTACATCCG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:193894754 original size:23 final size:23
Alignment explanation
Indices: 193894728--193894787 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
193894718 ATCGTAGCGT
* *
193894728 AGCTGCTAATAGTAACGCAGTAA
1 AGCTACTAATAGTAACGCAGCAA
193894751 AGCTACTAATAGTAACGCAGCAA
1 AGCTACTAATAGTAACGCAGCAA
*
193894774 AGCTCCTAATAGTA
1 AGCTACTAATAGTA
193894788 GTAAACGTGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (23 bp):
AGCTACTAATAGTAACGCAGCAA
Found at i:193899898 original size:27 final size:26
Alignment explanation
Indices: 193899854--193899905 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
193899844 CTCACTACAA
*
193899854 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
193899881 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
193899906 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:193904015 original size:29 final size:29
Alignment explanation
Indices: 193903982--193904055 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
193903972 GTGACGAGAT
193903982 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
193904011 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
193904040 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
193904056 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:193904071 original size:29 final size:29
Alignment explanation
Indices: 193904039--193904114 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
193904029 CTGGAAATAT
* *
193904039 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
193904068 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
193904097 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
193904115 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:193904082 original size:58 final size:58
Alignment explanation
Indices: 193903982--193904114 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
193903972 GTGACGAGAT
* * * * * *
193903982 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
193904040 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
193904098 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
193904115 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:193914494 original size:40 final size:40
Alignment explanation
Indices: 193914428--193914578 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
193914418 AAATTGAATG
* * *
193914428 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
193914467 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
193914507 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
193914547 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
193914579 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:193914592 original size:40 final size:40
Alignment explanation
Indices: 193914465--193914594 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
193914455 ATGCTGGAAA
* * *
193914465 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
193914505 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
193914545 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
193914585 TTATATCCGG
1 TTATATCCGG
193914595 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:193922533 original size:40 final size:40
Alignment explanation
Indices: 193922448--193922598 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
193922438 AATTGAATGA
* * * **
193922448 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
193922488 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
193922529 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
193922568 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
193922599 ACTGGTTATA
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:193925110 original size:16 final size:16
Alignment explanation
Indices: 193925089--193925119 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
193925079 CTATGCATGC
*
193925089 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
193925105 AAAATACAAAAGACA
1 AAAATACAAAAGACA
193925120 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:193926852 original size:49 final size:48
Alignment explanation
Indices: 193926796--193926975 Score: 170
Period size: 49 Copynumber: 3.7 Consensus size: 48
193926786 ATGTGTGTGT
193926796 CAGTGTAAGACCTGTCTAAGACATGGCATCGACACAGATAACTGAGAGA
1 CAGTGTAAGACCTGTCTAAGACATGGCATCGACACAGATAA-TGAGAGA
* * * * *
193926845 CAGTGTAAGACCTATCTAAAACATGGTATCGGCCTCAAGAT-ATGCA-AG-
1 CAGTGTAAGACCTGTCTAAGACATGGCATC-GACAC-AGATAATG-AGAGA
* ** * *
193926893 CTAGTGCAAGACCTGTCTGGGACATGGCATTGACACAGATAAGTAAGA-A
1 C-AGTGTAAGACCTGTCTAAGACATGGCATCGACACAGATAA-TGAGAGA
*
193926942 CCAGTGTAAGACCTGTCTAGGACATGGCATCGAC
1 -CAGTGTAAGACCTGTCTAAGACATGGCATCGAC
193926976 TAAGATGTAA
Statistics
Matches: 104, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
47 4 0.04
48 6 0.06
49 84 0.81
50 6 0.06
51 4 0.04
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTAAGACATGGCATCGACACAGATAATGAGAGA
Found at i:193935992 original size:19 final size:19
Alignment explanation
Indices: 193935968--193936008 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
193935958 AAAAAAAAGT
193935968 AGTCTTAAAATAGAATAAA
1 AGTCTTAAAATAGAATAAA
193935987 AGTCTTAAAATAGAATAAA
1 AGTCTTAAAATAGAATAAA
193936006 AGT
1 AGT
193936009 AAAAACATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.56, C:0.05, G:0.12, T:0.27
Consensus pattern (19 bp):
AGTCTTAAAATAGAATAAA
Found at i:193940498 original size:29 final size:28
Alignment explanation
Indices: 193940456--193940553 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
193940446 GACAAGATTG
* *
193940456 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-AATTATACA
* *
193940485 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
193940513 GCACTAAGTGTGCGAGCTGAA-TATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
193940540 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
193940554 GACTCACTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 20 0.32
28 24 0.39
29 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:193940524 original size:28 final size:28
Alignment explanation
Indices: 193940456--193940553 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
193940446 GACAAGATTG
* * * *
193940456 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
193940485 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
193940513 GCACTAAGTGTGCGAG-CTGAATATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
193940540 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
193940554 GACTCACTAA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
29 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:193947669 original size:46 final size:46
Alignment explanation
Indices: 193947514--193947681 Score: 207
Period size: 46 Copynumber: 3.6 Consensus size: 46
193947504 NNNNNNNNNN
* * *
193947514 CGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACT
1 CGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACT
* * * *
193947560 CGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-CGAACT
1 CGGACTCAACTCAACGAGTTCGGACG-CTCG---CATCCATAAGTGAACT
193947607 CGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACT
1 CGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACT
*
193947653 CGGACTCAACTCAACGAGTTCGGATGCTC
1 CGGACTCAACTCAACGAGTTCGGACGCTC
193947682 AACCATCCAG
Statistics
Matches: 103, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 59 0.57
47 32 0.31
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACT
Found at i:193950095 original size:29 final size:29
Alignment explanation
Indices: 193950056--193950143 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
193950046 CAAAGATAAC
*
193950056 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
193950085 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
193950114 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
193950144 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:193950114 original size:15 final size:15
Alignment explanation
Indices: 193950056--193950134 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
193950046 CAAAGATAAC
*
193950056 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
193950070 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
193950085 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
193950099 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
193950114 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
193950129 AAGAAA
1 AAGAAA
193950135 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:193950143 original size:15 final size:15
Alignment explanation
Indices: 193950067--193950143 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
193950057 AGAAAACCGA
193950067 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
193950082 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
193950096 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
193950110 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
193950126 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
193950141 ATA
1 ATA
193950144 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:193953204 original size:93 final size:93
Alignment explanation
Indices: 193953092--193953262 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
193953082 GCCCATAAGT
* *
193953092 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
193953157 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
193953185 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
193953250 CGAGTTCGGATGC
66 CGAGTTCGGATGC
193953263 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:193953278 original size:46 final size:46
Alignment explanation
Indices: 193953084--193953264 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
193953074 TGTAACCCGC
* * *
193953084 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
193953130 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
193953180 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
193953223 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
193953265 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:193960502 original size:78 final size:81
Alignment explanation
Indices: 193960383--193960564 Score: 239
Period size: 78 Copynumber: 2.3 Consensus size: 81
193960373 TACTCGTTCA
* *
193960383 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
193960446 ATTTAATAAC-TCGCAC
65 ATTTAATAACTTAGCAC
* **
193960462 CATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
193960525 TTTAGTCACTTAGCAC
66 TTTAATAACTTAGCAC
*
193960541 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
193960565 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.54
79 27 0.30
80 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAATAACTTAGCAC
Found at i:193960564 original size:40 final size:40
Alignment explanation
Indices: 193960381--193960564 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
193960371 GCTACTCGTT
*
193960381 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
193960421 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
193960461 C-CATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
193960499 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
193960540 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
193960565 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 25 0.20
39 19 0.15
40 68 0.54
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:193962811 original size:28 final size:28
Alignment explanation
Indices: 193962779--193962840 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
193962769 TAAGTCAGCG
193962779 CACTTAATGCT-TA-ATATTCAAACTCGCA
1 CACTTAATGCTATACA-ATT-AAACTCGCA
*
193962807 CACTTAGTGCTATACAATTAAACTCGCA
1 CACTTAATGCTATACAATTAAACTCGCA
193962835 CACTTA
1 CACTTA
193962841 GTGCCAATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 25 0.81
29 5 0.16
30 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (28 bp):
CACTTAATGCTATACAATTAAACTCGCA
Found at i:193969845 original size:28 final size:28
Alignment explanation
Indices: 193969813--193969882 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 28
193969803 ACAGTAAGTC
193969813 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATT-AAACT
193969841 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
193969869 CGCACACTTAGTGC
1 CGCACACTTAGTGC
193969883 CAATCTCATT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
28 34 0.85
29 5 0.12
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATTAAACT
Found at i:193976411 original size:55 final size:54
Alignment explanation
Indices: 193976324--193976578 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
193976314 ATTAGGGTTT
* *
193976324 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
193976379 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
193976434 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
193976487 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
193976536 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
193976579 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 67 0.39
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:193976530 original size:108 final size:110
Alignment explanation
Indices: 193976334--193976531 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
193976324 AAGGATACCG
*
193976334 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
193976399 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
193976444 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
193976506 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
193976532 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:193976790 original size:16 final size:16
Alignment explanation
Indices: 193976769--193976799 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
193976759 ATAAATTTGA
193976769 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
193976785 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
193976800 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:193983615 original size:40 final size:39
Alignment explanation
Indices: 193983570--193983777 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
193983560 CGGAATACAA
*
193983570 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
193983610 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
193983650 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
193983690 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
193983730 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
193983770 CCGGATAT
1 CCGGATAT
193983778 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:193983710 original size:80 final size:80
Alignment explanation
Indices: 193983570--193983776 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
193983560 CGGAATACAA
* * *
193983570 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
193983634 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
193983650 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
193983714 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
193983730 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
193983777 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:193991662 original size:40 final size:39
Alignment explanation
Indices: 193991617--193991824 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
193991607 CGGAATACAA
*
193991617 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
193991657 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
193991697 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
193991737 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
193991777 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
193991817 CCGGATAT
1 CCGGATAT
193991825 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:193991757 original size:80 final size:80
Alignment explanation
Indices: 193991617--193991823 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
193991607 CGGAATACAA
* * *
193991617 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
193991681 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
193991697 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
193991761 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
193991777 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
193991824 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:193994703 original size:40 final size:40
Alignment explanation
Indices: 193994654--193994765 Score: 170
Period size: 40 Copynumber: 2.8 Consensus size: 40
193994644 CCAGCATGAT
* * * *
193994654 TGCTCTTCGGGACCTAGCCCGGATACATCGCTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
193994694 TGCTCTTCGGAACTTAGTCCGTATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
193994734 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
193994766 CTCAATTCTC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:193996632 original size:36 final size:36
Alignment explanation
Indices: 193996585--193996670 Score: 138
Period size: 36 Copynumber: 2.3 Consensus size: 36
193996575 TACGAAGTCT
193996585 TACCCGGACATAATCTCCACACGTAGTCATC-GGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
193996620 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
193996657 TCACCCGGAACATA
1 T-ACCCGG-ACATA
193996671 TTTCTAAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
36 32 0.68
37 10 0.21
38 5 0.11
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:193996806 original size:49 final size:49
Alignment explanation
Indices: 193996739--193997098 Score: 569
Period size: 49 Copynumber: 7.1 Consensus size: 49
193996729 TTTACCACAT
* *
193996739 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
193996788 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
193996837 ATATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
193996885 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
193996934 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGG------C-C-----TTATCAC
193996995 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
193997044 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
193997093 ATATAT
1 ATATAT
193997099 TATTATGTAT
Statistics
Matches: 292, Mismatches: 6, Indels: 26
0.90 0.02 0.08
Matches are distributed among these distances:
48 48 0.16
49 194 0.66
54 1 0.00
55 2 0.01
56 1 0.00
61 46 0.16
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:193996996 original size:61 final size:60
Alignment explanation
Indices: 193996927--193997101 Score: 255
Period size: 61 Copynumber: 3.1 Consensus size: 60
193996917 CCATTAGGCC
193996927 TTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TTATCACATATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
193996988 TTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TTATCACATATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
193997049 -TAT-AC------AT---TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TTATCACATATATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
193997098 TTAT
1 TTAT
193997102 TATGTATAGA
Statistics
Matches: 112, Mismatches: 1, Indels: 13
0.89 0.01 0.10
Matches are distributed among these distances:
49 42 0.38
50 3 0.03
53 2 0.02
59 2 0.02
60 3 0.03
61 60 0.54
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (60 bp):
TTATCACATATATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
Found at i:193996999 original size:110 final size:110
Alignment explanation
Indices: 193996878--193997101 Score: 439
Period size: 110 Copynumber: 2.0 Consensus size: 110
193996868 CCATTAGGCC
193996878 TTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 TTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
193996943 CAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
66 CAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
193996988 TTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 TTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
*
193997053 CATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
66 CAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
193997098 TTAT
1 TTAT
193997102 TATGTATAGA
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 113 1.00
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.36
Consensus pattern (110 bp):
TTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
CAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
Found at i:193997006 original size:10 final size:12
Alignment explanation
Indices: 193996976--193997000 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
193996966 CCATTAGGCC
193996976 TTATCACATATA
1 TTATCACATATA
193996988 TTATCACATATA
1 TTATCACATATA
193997000 T
1 T
193997001 ATACATTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (12 bp):
TTATCACATATA
Found at i:193999476 original size:41 final size:40
Alignment explanation
Indices: 193999298--193999477 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
193999288 GCTCGATTGT
* * * *
193999298 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
* ** *
193999338 CTTCGGGAATTAGCCCGGATTTAAAAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
193999378 CTTCGGGACTTAACTCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
193999418 CTTCGGGAGTT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
193999459 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
193999478 CACCATTCAA
Statistics
Matches: 111, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
40 82 0.74
41 28 0.25
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:194000287 original size:40 final size:40
Alignment explanation
Indices: 194000222--194000373 Score: 241
Period size: 40 Copynumber: 3.8 Consensus size: 40
194000212 CCAGCATGAT
* * * *
194000222 TGCTCTTCGGGACCTAGCCCGGATACATCGCTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
194000262 TGCTCTTCGAAACTTAGTCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
194000302 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
194000342 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
194000374 CTCAATTCTC
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:194003486 original size:31 final size:31
Alignment explanation
Indices: 194003442--194003551 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
194003432 TTTAAAGGTT
* *
194003442 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
194003473 ACTGGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
*
194003504 ACTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
*
194003535 ACTGGGCCGAAGCCTTT
1 ACTGGGCCAAAGCCTTT
194003552 ACTGTAAACG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (31 bp):
ACTGGGCCAAAGCCTTTTCATAAATCATATC
Found at i:194003622 original size:42 final size:42
Alignment explanation
Indices: 194003575--194003666 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
194003565 TGGCCCATAG
* ** *
194003575 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
194003617 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
194003659 GCCCATTT
1 GCCCATTT
194003667 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:194003840 original size:25 final size:26
Alignment explanation
Indices: 194003812--194003902 Score: 150
Period size: 25 Copynumber: 3.6 Consensus size: 26
194003802 CTCTTTTAAT
194003812 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
194003837 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
194003862 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
194003888 AACTGGGGCATAAGC
1 AACTGGGGCATAAGC
194003903 TGTAACACCC
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 33 0.54
26 28 0.46
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:194003882 original size:51 final size:50
Alignment explanation
Indices: 194003799--194003902 Score: 167
Period size: 51 Copynumber: 2.1 Consensus size: 50
194003789 CTGGAGGCCT
194003799 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATA
194003848 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATA
194003900 AGC
1 AGC
194003903 TGTAACACCC
Statistics
Matches: 51, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
48 5 0.10
49 7 0.14
50 10 0.20
51 25 0.49
52 4 0.08
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (50 bp):
AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATA
Found at i:194003883 original size:26 final size:25
Alignment explanation
Indices: 194003799--194003902 Score: 131
Period size: 25 Copynumber: 4.1 Consensus size: 25
194003789 CTGGAGGCCT
194003799 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
**
194003823 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
194003848 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
**
194003874 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
194003900 AGC
1 AGC
194003903 TGTAACACCC
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
23 5 0.07
24 5 0.07
25 33 0.46
26 28 0.39
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:194005312 original size:40 final size:40
Alignment explanation
Indices: 194005267--194005440 Score: 174
Period size: 40 Copynumber: 4.3 Consensus size: 40
194005257 CGGAATATAA
194005267 CCGGATATATTCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATATTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
194005307 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATTCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
194005347 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATATTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
194005387 CCGGATATAATTTC-C-AGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATAT-A-TTCACTAGCACAAATGCCTTCGGGTCTTAGC
194005427 CCGGATATCATTCA
1 CCGGATAT-ATTCA
194005441 ATTTGTCATG
Statistics
Matches: 111, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 4 0.04
40 104 0.94
41 2 0.02
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATATTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:194005417 original size:80 final size:80
Alignment explanation
Indices: 194005283--194005434 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
194005273 ATATTCACGT
* *
194005283 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
194005348 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
194005363 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGGCTTAG
194005426 CCCGGATAT
64 CCCGGATAT
194005435 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:194008013 original size:40 final size:41
Alignment explanation
Indices: 194007923--194008028 Score: 103
Period size: 40 Copynumber: 2.6 Consensus size: 41
194007913 AGAAATTGAA
* * *
194007923 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT
1 TGATATCCGGGCTAAGACCCGAAGGCAATTATGCTGCAAAT
*
194007964 T-ATAACCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAAT
1 TGATATCCGGGCTAAGACCCGAAGGCAATTATGCTGCAAAT
* * *
194008001 CGTGATATCCGGGTTAAGTCCCGTAGGC
1 --TGATATCCGGGCTAAGACCCGAAGGC
194008029 CTTGGTGCGG
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
37 6 0.11
38 2 0.04
39 4 0.07
40 41 0.76
41 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (41 bp):
TGATATCCGGGCTAAGACCCGAAGGCAATTATGCTGCAAAT
Found at i:194018359 original size:41 final size:41
Alignment explanation
Indices: 194018314--194018430 Score: 96
Period size: 41 Copynumber: 3.1 Consensus size: 41
194018304 AAAGATAAAT
194018314 TGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCA
1 TGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCA
* * * * *
194018355 TGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-AA
1 TGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCA
194018385 TGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCA
1 TGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCA
194018426 TGTAG
1 TGTAG
194018431 ACAAGAGAGC
Statistics
Matches: 53, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 13 0.25
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
TGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCA
Found at i:194018394 original size:71 final size:71
Alignment explanation
Indices: 194018215--194018444 Score: 393
Period size: 71 Copynumber: 3.3 Consensus size: 71
194018205 GAGATGTATC
194018215 CCATGTAGACAAGAGAGC-ACGTGAAAGAT--ATGTAGC-AGGTCGCATGCGTGATTCCAA-TGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
194018275 A-GACA
66 AGGACA
194018280 CCATAGTAGACAAG-GAGCTACGTGAAAGATAAATTGTAGCTAGGTCGCATGCGTGATTCCAAGT
1 CCAT-GTAGACAAGAGAGCTACGTGAAAGATAAA-TGTAGCTAGGTCGCATGCGTGATTCCAAGT
194018344 GAAGGACA
64 GAAGGACA
194018352 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
194018417 AGGACA
66 AGGACA
194018423 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
194018445 AGACAAATCG
Statistics
Matches: 156, Mismatches: 0, Indels: 12
0.93 0.00 0.07
Matches are distributed among these distances:
65 8 0.05
66 20 0.13
68 1 0.01
69 6 0.04
70 21 0.13
71 73 0.47
72 27 0.17
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:194025918 original size:41 final size:41
Alignment explanation
Indices: 194025873--194026061 Score: 102
Period size: 41 Copynumber: 5.1 Consensus size: 41
194025863 TGAAAGATAA
194025873 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
194025914 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
194025944 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
194025985 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
194026015 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
194026056 ATGTAG
1 ATGTAG
194026062 ACAAGAGAGC
Statistics
Matches: 102, Mismatches: 20, Indels: 52
0.59 0.11 0.30
Matches are distributed among these distances:
29 2 0.02
30 16 0.16
31 18 0.18
32 2 0.02
33 6 0.06
34 2 0.02
35 2 0.02
36 2 0.02
37 2 0.02
38 6 0.06
39 2 0.02
40 18 0.18
41 22 0.22
42 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:194025929 original size:71 final size:71
Alignment explanation
Indices: 194025841--194026075 Score: 470
Period size: 71 Copynumber: 3.3 Consensus size: 71
194025831 GAGATGTATC
194025841 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
194025906 AGGACA
66 AGGACA
194025912 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
194025977 AGGACA
66 AGGACA
194025983 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
194026048 AGGACA
66 AGGACA
194026054 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
194026076 AGACAAATCG
Statistics
Matches: 164, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 164 1.00
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:194037497 original size:29 final size:29
Alignment explanation
Indices: 194037407--194037566 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
194037397 ACTCGATTTC
* * **
194037407 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
194037436 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
194037464 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
194037494 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
194037523 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
194037552 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
194037567 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:194045548 original size:29 final size:29
Alignment explanation
Indices: 194045458--194045617 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
194045448 ACTCGATTTC
* * **
194045458 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
194045487 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
194045515 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
194045545 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
194045574 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
194045603 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
194045618 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:194053266 original size:29 final size:29
Alignment explanation
Indices: 194053233--194053360 Score: 174
Period size: 29 Copynumber: 4.6 Consensus size: 29
194053223 GTGACGAGAT
194053233 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
194053262 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
194053291 TGGCACTAAGTGTGCGTGCTGG--A-A-A
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
194053316 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
194053345 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
194053361 AGTTCGGAGG
Statistics
Matches: 89, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
25 21 0.24
26 1 0.01
27 2 0.02
28 1 0.01
29 64 0.72
ACGTcount: A:0.27, C:0.16, G:0.34, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:194053350 original size:54 final size:57
Alignment explanation
Indices: 194053234--194053360 Score: 170
Period size: 54 Copynumber: 2.3 Consensus size: 57
194053224 TGACGAGATT
** * *
194053234 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGG-AATATATGGCACTAAGTGTGCAAGCTGGAAAAATAC
194053292 GGCACTAAGTGTGCGTGCTGG-A-A-ATGGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAATATATGGCACTAAGTGTGCAAGCTGGAAAAATAC
**
194053346 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
194053361 AGTTCGGAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
54 40 0.63
55 1 0.02
56 1 0.02
58 21 0.33
ACGTcount: A:0.27, C:0.16, G:0.34, T:0.24
Consensus pattern (57 bp):
GGCACTAAGTGTGCGTGCTGGAATATATGGCACTAAGTGTGCAAGCTGGAAAAATAC
Found at i:194061236 original size:29 final size:29
Alignment explanation
Indices: 194061203--194061305 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
194061193 GTGACGAGAT
194061203 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
194061232 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
194061261 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
194061290 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
194061306 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:194074037 original size:40 final size:40
Alignment explanation
Indices: 194073971--194074137 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
194073961 AAATTGAATG
* * *
194073971 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
194074010 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
194074050 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
194074090 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
194074130 ATATCCGG
1 ATATCCGG
194074138 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:194079522 original size:19 final size:19
Alignment explanation
Indices: 194079498--194079537 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
194079488 GATATGATAC
*
194079498 TAAAATTATTTAAAA-AAAT
1 TAAAA-TATATAAAAGAAAT
194079517 TAAAATATATAAAAGAAAT
1 TAAAATATATAAAAGAAAT
194079536 TA
1 TA
194079538 GGGAAACATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
TAAAATATATAAAAGAAAT
Found at i:194079824 original size:22 final size:21
Alignment explanation
Indices: 194079789--194079864 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
194079779 AAAAGGTATC
* *
194079789 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
194079810 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
194079833 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
194079852 TGC-AATCATATCT
1 TACAAATCATATCT
194079865 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:194079849 original size:19 final size:19
Alignment explanation
Indices: 194079825--194079915 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
194079815 AATCATATCT
194079825 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
194079844 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
194079862 TCTAAGATTG--TATTATA
1 TCTAAGATTGCATATCATA
194079879 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
194079898 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
194079916 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 16 0.24
19 36 0.54
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:194079885 original size:35 final size:37
Alignment explanation
Indices: 194079818--194079915 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
194079808 ATTACAAAAT
194079818 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
*
194079854 CA-ATCATATCTAAGATTG-TATTATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
194079889 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
194079916 TGAAGATTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
35 21 0.38
36 19 0.35
37 10 0.18
38 5 0.09
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:194080072 original size:21 final size:20
Alignment explanation
Indices: 194080033--194080073 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
194080023 CTTGGACTTC
**
194080033 ATTTTTTTTTTGGGTTTATT
1 ATTTTTTTTTTGGACTTATT
194080053 ATTTTTGTTTTTGGACTTATT
1 ATTTTT-TTTTTGGACTTATT
194080074 TCTGGGCCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.02, G:0.15, T:0.71
Consensus pattern (20 bp):
ATTTTTTTTTTGGACTTATT
Found at i:194080828 original size:16 final size:16
Alignment explanation
Indices: 194080807--194080837 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
194080797 TCTTCCTCTC
194080807 CTGAATAGTTGATCCG
1 CTGAATAGTTGATCCG
194080823 CTGAATAGTTGATCC
1 CTGAATAGTTGATCC
194080838 ACTAAGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (16 bp):
CTGAATAGTTGATCCG
Found at i:194082895 original size:18 final size:18
Alignment explanation
Indices: 194082868--194082903 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
194082858 TAGCAATATC
194082868 CACAAAAAATCATTAAAA
1 CACAAAAAATCATTAAAA
*
194082886 CACAAGAAATCATTAAAA
1 CACAAAAAATCATTAAAA
194082904 AACTTTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.64, C:0.17, G:0.03, T:0.17
Consensus pattern (18 bp):
CACAAAAAATCATTAAAA
Found at i:194088742 original size:210 final size:209
Alignment explanation
Indices: 194088307--194089108 Score: 1054
Period size: 210 Copynumber: 3.9 Consensus size: 209
194088297 AAATCTGCTT
* *
194088307 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * * ** * **
194088372 GTGAAAACTAAATTAGCTATGTCTTCGATTTGCTCCTTG-TAAGCATA-AG-GATGCCAA-A---
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCT--GAATACAGAGA-GATAAGATCT
* * * * * * *
194088430 -TCATCTTGGATCTTGTTTCAGTC-TAATCGTCTGAAGGTCAAATCTGCTATGTATCTGCTCTCT
128 GTCATCTTGGATC-TGCTTCAG-CGTAAACATCTGAAGGTGAAATCTGCTATGTGTCTCCT-TCA
** * * *
194088493 ATTGAAGTAGAGATGTCAGA
190 ATCAAAGTGGAAATGCCAGA
*
194088513 CTTCGATTTGTTCTCTGACAATACTGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
194088578 GTGAAAGTCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCTGAATACAGAGAGATAAGATCTGTC
*
194088643 ATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTGAAATCTGCTATGTGTCTACCTTCAATCAA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAAATCTGCTATGTGTCT-CCTTCAATCAA
194088708 AGTGGAAATGCCAGA
195 AGTGGAAATGCCAGA
* * * *
194088723 CTTCGATTTGTTCTCTGACAATACAGAGAGGATAAATTATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * *
194088788 --AAAAGCCAAATCAGCTATTTCTTCGATCTACTCCCCGCTGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCTGAATACAGAGAGATAAGATCTGTC
* *
194088851 ATCTTGGATCTACTTCAGCGTAAACATCTGAAGGT-AAGATCTGCTATGTGTCTGCCTTCCATCA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAA-ATCTGCTATGTGTCT-CCTTCAATCA
*
194088915 AAGTGGAAATGCCAAA
194 AAGTGGAAATGCCAGA
*
194088931 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
194088996 GTGAAAGCCAAATCAGCTATATCATT-GATCTGCTCCCCGCTGAATACAGAGAGATAAGATCTGT
66 GTGAAAGCCAAATCAGCTATATC-TTCGATCTGCTCCCCGCTGAATACAGAGAGATAAGATCTGT
* *
194089060 CATCTTCGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATG
130 CATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAAATCTGCTATG
194089109 CTGCGGCTTA
Statistics
Matches: 529, Mismatches: 52, Indels: 26
0.87 0.09 0.04
Matches are distributed among these distances:
205 4 0.01
206 98 0.19
207 5 0.01
208 191 0.36
209 1 0.00
210 213 0.40
211 17 0.03
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (209 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCTGAATACAGAGAGATAAGATCTGTC
ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAAATCTGCTATGTGTCTCCTTCAATCAAA
GTGGAAATGCCAGA
Found at i:194089087 original size:418 final size:413
Alignment explanation
Indices: 194088307--194089108 Score: 1107
Period size: 418 Copynumber: 1.9 Consensus size: 413
194088297 AAATCTGCTT
* *
194088307 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGAGGACAAATTATCTTAGATTTGCTTCATCGTAAACAC
* * * * ** * *
194088372 GTGAAAACTAAATTAGCTATGTCTTCGATTTGCTCCTTGTAAGCATAAGGATGCCAAATCATCTT
66 --GAAAACCAAATCAGCTATGTCTTCGATCTACTCCCCGT-AGAATAAGGATGACAAATCATCTT
** * * * **
194088437 GGATCTTGTTTCAGTCTAATCGTCTGAAGGTCAAATCTGCTATGTATCTGCTCTCTATTGAAGTA
128 GGATCTTACTTCAGTCTAAACATCTGAAGGTCAAATCTGCTATGTATCTGCTCTCCATCAAAGTA
* * * * *
194088502 GAGATGTCAGACTTCGATTTGTTCTCTGACAATACTGAGATGACAAATCATCTTAGATTTGCTTC
193 GAAATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTC
*
194088567 ATCGTAAACACGTGAAAGTCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGA
258 ATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGA
*
194088632 TAAGATCTGTCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTGAAATCTGCTATGTGTCTA
323 TAAGATCTGTCATCTTCGATCTGCTTCAGCATAAACATCTGAAGGTGAAATCTGCTATGTGTCTA
194088697 CCTTCAATCAAAGTGGAAATGCCAGA
388 CCTTCAATCAAAGTGGAAATGCCAGA
* *
194088723 CTTCGATTTGTTCTCTGACAATACAGAGAGGATAAATTATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGAGGACAAATTATCTTAGATTTGCTTCATCGTAAACAC
* *
194088788 -AAAAGCCAAATCAGCTATTTCTTCGATCTACTCCCCGCT-GAATACAGAGA-GATAAGATCTGT
66 GAAAA-CCAAATCAGCTATGTCTTCGATCTACTCCCCG-TAGAATA-AG-GATGACAA-A----T
*
194088850 CATCTTGGATC-TACTTCAG-CGTAAACATCTGAAGGT-AAGATCTGCTATGTGTCTGC-CTTCC
122 CATCTTGGATCTTACTTCAGTC-TAAACATCTGAAGGTCAA-ATCTGCTATGTATCTGCTC-TCC
*
194088911 ATCAAAGTGGAAATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAG
184 ATCAAAGTAGAAATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAG
*
194088976 ATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCATT-GATCTGCTCCCCGCTGAA
249 ATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATC-TTCGATCTGCTCCCCGCCGAA
* *
194089040 TACAGAGAGATAAGATCTGTCATCTTCGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGC
313 TACAGAGAGATAAGATCTGTCATCTTCGATCTGCTTCAGCATAAACATCTGAAGGTGAAATCTGC
194089105 TATG
378 TATG
194089109 CTGCGGCTTA
Statistics
Matches: 340, Mismatches: 33, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
413 8 0.02
414 30 0.09
415 4 0.01
416 61 0.18
417 4 0.01
418 219 0.64
419 14 0.04
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (413 bp):
CTTCGATTTGTTCTCTGACAATACAGAGAGGACAAATTATCTTAGATTTGCTTCATCGTAAACAC
GAAAACCAAATCAGCTATGTCTTCGATCTACTCCCCGTAGAATAAGGATGACAAATCATCTTGGA
TCTTACTTCAGTCTAAACATCTGAAGGTCAAATCTGCTATGTATCTGCTCTCCATCAAAGTAGAA
ATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
GTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAA
GATCTGTCATCTTCGATCTGCTTCAGCATAAACATCTGAAGGTGAAATCTGCTATGTGTCTACCT
TCAATCAAAGTGGAAATGCCAGA
Found at i:194100703 original size:45 final size:45
Alignment explanation
Indices: 194100654--194100758 Score: 201
Period size: 45 Copynumber: 2.3 Consensus size: 45
194100644 TTAACAATAT
*
194100654 ACATACAAAGATATATATAGCATGTATTGAGAATGAATAAACAAA
1 ACATACAAACATATATATAGCATGTATTGAGAATGAATAAACAAA
194100699 ACATACAAACATATATATAGCATGTATTGAGAATGAATAAACAAA
1 ACATACAAACATATATATAGCATGTATTGAGAATGAATAAACAAA
194100744 ACATACAAACATATA
1 ACATACAAACATATA
194100759 AAGTAATACA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.54, C:0.11, G:0.10, T:0.24
Consensus pattern (45 bp):
ACATACAAACATATATATAGCATGTATTGAGAATGAATAAACAAA
Found at i:194106585 original size:26 final size:26
Alignment explanation
Indices: 194106546--194106598 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
194106536 TGCAAAGGTT
*
194106546 TGTAATAATGCTCGAAAACTATTCTG
1 TGTAATAATACTCGAAAACTATTCTG
194106572 TGTAATAATACTCGAAAACTATTCTG
1 TGTAATAATACTCGAAAACTATTCTG
194106598 T
1 T
194106599 CTTTTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (26 bp):
TGTAATAATACTCGAAAACTATTCTG
Found at i:194111329 original size:3 final size:3
Alignment explanation
Indices: 194111321--194111379 Score: 72
Period size: 3 Copynumber: 20.7 Consensus size: 3
194111311 GTAAAATATT
*
194111321 ATA ATA ATA ATA ATA ATA ATA ATA ATTA CTA A-A AT- ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA
194111365 AT- ATA AT- ATA ATA AT
1 ATA ATA ATA ATA ATA AT
194111380 TAAAGTAAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
2 8 0.16
3 39 0.80
4 2 0.04
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:194111344 original size:26 final size:25
Alignment explanation
Indices: 194111315--194111379 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 25
194111305 ATTTAAGTAA
194111315 AATATTATAATAATAATAATAATAAT
1 AATATTATAATAAT-ATAATAATAAT
194111341 AATAATTACTAA-AATATAATAATAAT
1 AAT-ATTA-TAATAATATAATAATAAT
*
194111367 -ATAATATAATAAT
1 AATATTATAATAAT
194111380 TAAAGTAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
23 3 0.09
24 6 0.17
25 2 0.06
26 14 0.40
27 7 0.20
28 3 0.09
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (25 bp):
AATATTATAATAATATAATAATAAT
Found at i:194111390 original size:29 final size:32
Alignment explanation
Indices: 194111324--194111391 Score: 88
Period size: 30 Copynumber: 2.2 Consensus size: 32
194111314 AAATATTATA
*
194111324 ATAATAATAATAATAATAATAATTACTAAAAT
1 ATAATAATAATAATAATAATAATAACTAAAAT
* *
194111356 ATAATAATAAT-ATAAT-ATAATAATTAAAGT
1 ATAATAATAATAATAATAATAATAACTAAAAT
194111386 A-AATAA
1 ATAATAA
194111392 AAGAAATAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 5 0.15
30 12 0.36
31 5 0.15
32 11 0.33
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (32 bp):
ATAATAATAATAATAATAATAATAACTAAAAT
Found at i:194111465 original size:20 final size:21
Alignment explanation
Indices: 194111431--194111488 Score: 73
Period size: 20 Copynumber: 2.6 Consensus size: 21
194111421 AAAGAGGGAC
194111431 AAAGAAAATAGGGAAAGAAAG
1 AAAGAAAATAGGGAAAGAAAG
194111452 AAAGAAAA-AGGGAAAGAAAAAG
1 AAAGAAAATAGGGAAAG--AAAG
194111474 AAAGGAAAAATAGGG
1 AAA-G-AAAATAGGG
194111489 TTTTGAGGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
20 8 0.25
21 8 0.25
22 7 0.22
23 1 0.03
24 4 0.12
25 4 0.12
ACGTcount: A:0.67, C:0.00, G:0.29, T:0.03
Consensus pattern (21 bp):
AAAGAAAATAGGGAAAGAAAG
Found at i:194112292 original size:6 final size:6
Alignment explanation
Indices: 194112281--194112317 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
194112271 TTGTGTGCCA
*
194112281 TACTGT TACTGT TACTGT TACTGT TACTGT TATTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT T
194112318 CCAGATTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.16, C:0.14, G:0.16, T:0.54
Consensus pattern (6 bp):
TACTGT
Found at i:194113449 original size:17 final size:18
Alignment explanation
Indices: 194113407--194113455 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
194113397 AGTTGAAAAG
194113407 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
194113426 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
194113443 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
194113456 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:194114344 original size:40 final size:40
Alignment explanation
Indices: 194114278--194114444 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
194114268 AAATTGAATG
* * *
194114278 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
194114317 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
194114357 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
194114397 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
194114437 ATATCCGG
1 ATATCCGG
194114445 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:194125941 original size:40 final size:40
Alignment explanation
Indices: 194125814--194125943 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
194125804 ATGCTGGAAA
* *
194125814 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
194125854 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
194125894 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
194125934 TTATATCCGG
1 TTATATCCGG
194125944 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:194131260 original size:123 final size:123
Alignment explanation
Indices: 194131041--194131379 Score: 588
Period size: 123 Copynumber: 2.8 Consensus size: 123
194131031 GAATTATGTG
194131041 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
194131106 GCTAAGTCCCGAAGGCAATCATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
194131164 AAATGAAATATGGATGTGTAATGATTATTGATATATGTATGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
194131229 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
194131287 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
194131352 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
194131380 AATTATATCC
Statistics
Matches: 205, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 205 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:194131403 original size:40 final size:40
Alignment explanation
Indices: 194131348--194131591 Score: 292
Period size: 40 Copynumber: 6.1 Consensus size: 40
194131338 TGAATGATAC
* * * * **
194131348 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
194131388 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
194131428 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
194131468 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * *
194131508 CCGGGCTAATACCCAAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
194131548 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
194131588 CCGG
1 CCGG
194131592 TTGTATTCCG
Statistics
Matches: 180, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
40 178 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:194138106 original size:28 final size:28
Alignment explanation
Indices: 194138061--194138129 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
194138051 ATTTAAACCC
*
194138061 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
194138088 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
194138116 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
194138130 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:194142748 original size:19 final size:20
Alignment explanation
Indices: 194142706--194142750 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
194142696 CATTATTTTG
*
194142706 AAATAAGAAAATAATTAGTA
1 AAATAAGAAAATAATGAGTA
194142726 AAATAAGAAAA-AGATGA-TA
1 AAATAAGAAAATA-ATGAGTA
194142745 AAATAA
1 AAATAA
194142751 TGGGTGTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20
Consensus pattern (20 bp):
AAATAAGAAAATAATGAGTA
Found at i:194145405 original size:40 final size:40
Alignment explanation
Indices: 194145293--194145445 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
194145283 GGATATAGCG
* * * * ***
194145293 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
194145333 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
194145373 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
194145413 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
194145446 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:194165627 original size:17 final size:17
Alignment explanation
Indices: 194165606--194165639 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
194165596 AGAGCATCTT
*
194165606 AAAAAAAAAAGAGAAAAG
1 AAAAGAAAAA-AGAAAAG
194165624 AAAAGAAAAAAGAAAA
1 AAAAGAAAAAAGAAAA
194165640 AGAGAGAGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAAGAAAAG
Found at i:194166688 original size:14 final size:13
Alignment explanation
Indices: 194166657--194166687 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
194166647 CGCCGAGGTA
194166657 TTTTTAATTTCTG
1 TTTTTAATTTCTG
*
194166670 CTTTTAATTTCTG
1 TTTTTAATTTCTG
194166683 TTTTT
1 TTTTT
194166688 TCAAAAATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:194166724 original size:87 final size:87
Alignment explanation
Indices: 194166513--194166899 Score: 386
Period size: 87 Copynumber: 4.3 Consensus size: 87
194166503 TATCTTTCAA
* **
194166513 AAAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GGCACGCTGAGGTATTTTCAATT
194166578 TCCAT-TTTTTCAATTTATGCTTTTC
64 T-C-TGTTTTTCAATTTATGCTTTTC
* * *
194166603 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTC
* * *
194166668 TGCTTTT-AATTTCTGTTTTTTC
66 TGTTTTTCAATTTATG-CTTTTC
* *
194166690 AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTC
194166755 TGTTTTTCAATTT-TGCCTTACAAATTCTGC
66 TGTTTTTCAATTTATG-C-T-----TT-T-C
** * * *
194166785 TTTTCAAATCAACGCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAT
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAAT
* * * *
194166850 TTTTATTTTTTTAATTTATG-TTTCTAA
63 TTCT-GTTTTTCAATTTATGCTTT-T-C
194166877 AAAAATCAACTCATATTGCGAGA
1 AAAAATCAACTCATATTGCGAGA
194166900 AGTTGAGGTA
Statistics
Matches: 251, Mismatches: 30, Indels: 33
0.80 0.10 0.11
Matches are distributed among these distances:
86 8 0.03
87 78 0.31
88 26 0.10
89 22 0.09
90 36 0.14
92 4 0.02
93 2 0.01
94 1 0.00
95 1 0.00
97 1 0.00
98 60 0.24
99 10 0.04
100 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTC
TGTTTTTCAATTTATGCTTTTC
Found at i:194166994 original size:75 final size:74
Alignment explanation
Indices: 194166903--194167291 Score: 466
Period size: 75 Copynumber: 5.3 Consensus size: 74
194166893 TGCGAGAAGT
* * *
194166903 TGAGGTATTTTGAATTTCTGTTTTTTAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCT
1 TGAGGTATTTTCAATTTCTGTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
*
194166968 CAGGACATGC
66 CAAGACA-GC
* * * * * * *
194166978 TGAGGTAATTTCAATTTTTG-TTTGT-CAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCT
1 TGAGGTATTTTCAATTTCTGTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
*
194167041 CAAGACACGT
66 CAAGACA-GC
* * * * *
194167051 TGTGGTATTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAAGTGAGTTGAACCT
1 TGAGGTATTTTCAATTTCTGTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
*
194167116 CAAGACACGT
66 CAAGACA-GC
* * *
194167126 TGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAAGTGAGTTGAACCT
1 TGAGGTATTTTCAATTTCTGTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
194167191 CAAGAC-GC
66 CAAGACAGC
* * * *
194167199 TGAGGTAATTTCAATTTTTG-TTTGT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
1 TGAGGTATTTTCAATTTCTGTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
194167262 CAAGAC-GC
66 CAAGACAGC
* *
194167270 TGAGGTGTTTTCCATTTCTGTT
1 TGAGGTATTTTCAATTTCTGTT
194167292 CTTCAATTTC
Statistics
Matches: 271, Mismatches: 40, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
71 59 0.22
72 4 0.01
73 77 0.28
74 6 0.02
75 125 0.46
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (74 bp):
TGAGGTATTTTCAATTTCTGTTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
CAAGACAGC
Found at i:194167107 original size:148 final size:144
Alignment explanation
Indices: 194166901--194168289 Score: 583
Period size: 148 Copynumber: 8.7 Consensus size: 144
194166891 ATTGCGAGAA
* * *
194166901 GTTGAGGTATTTTGAATTTCTGTTTTTTAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGC
1 GTTGAGGTATTTTCAATTTCTG--TTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
* * * * *
194166966 CTCAGGACATGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAAATTAACTCATATTGTGAGAGGT
64 CTCAAGACA-GCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAAGT
*
194167030 GAGTTGAGCCTCAAGACAC
128 GAGTTGAACCTCAAG--AC
* * *
194167049 GTTGTGGTATTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAAGTGAGTTGAAC
1 GTTGAGGTATTTTCAATTTCTGT-TTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
* * * *
194167114 CTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAAG
64 CTCAAGACA-GCTGAGGTAATTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAAG
194167179 TGAGTTGAACCTCAAGAC
127 TGAGTTGAACCTCAAGAC
* * * *
194167197 GCTGAGGTAATTTCAATTTTTGTTTGT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC
1 GTTGAGGTATTTTCAATTTCTGTTT-TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC
* *
194167261 TCAAGAC-GCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTT-TCAAAAAAATCAGCTC
65 TCAAGACAGCTGA-G-G---T--A------AT-TTCAATTTCTGT-TTGTC-AAAAAATCAACTC
* * * *
194167324 ATATTGCGAG-TGATGAGTTGAGCCTTGACTCACAC
114 ATATTGCGAGAAG-TGAGTTGAACC-T--C-AAGAC
* * *
194167359 GCTGAGGTATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCCAAAAACACAACTCATATTGCGA
1 GTTGAGGTATTTTCAATTTCTG-TTTT--AA------------AAAAA-TCAACTCATATTGCGA
* * * * *
194167424 GAGGTGAGTTGAGCCTC-GGCTCACGTGCTGAGGTATTTTCAATTTCTACTTT-TCAAAAGAATC
50 GAGGTGAGTTGAACCTCAAG---AC-AGCTGAGGTAATTTCAATTTCT-GTTTGTCAAAA-AATC
* * *
194167487 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
109 AACTCATATTGCGAGAAGTGAGTTGAACCTCA--AGAC
* * * *
194167525 GCTGAGGTAATTTT-AATTTCTATTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAG
1 GTTGAGGT-ATTTTCAATTTCT-GTTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
* *
194167589 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTT-TCAAAAAAAAATCAAAAAAATCAAATC
63 CCTCAAGACA-GCTGAGGTAATTTCAATTTCTGT-TTGTC---AAAAAATC-----AA-C---TC
* * *
194167653 ATATTGCGAGAGGTAAGTTGAGCCTCAAGAC
114 ATATTGCGAGAAGTGAGTTGAACCTCAAGAC
* ** * **
194167684 GCTGAGGTATTTTTTCCGTTTTTCAATTTATTTTTCAAAAATCCAACTCATATTGCGAGAGGTGA
1 GTTGAGGTA--TTTT-C-AATTTC----TGTTTTAAAAAAAT-CAACTCATATTGCGAGAGGTGA
* ** * * * *
194167749 GTTGAGCCTCGACTCACGTGCTAAGGTATTTTCAATTTCTGCTTTTTAATTTCTACTTTTCAAAA
57 GTTGAACCTC-A-AGAC-AGCTGAGGTAATTTCAATTTCTG------------T--TTGTCAAAA
* * * *
194167814 GAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACAC
105 -AATCAACTCATATTGCGAGAAGTGAGTTGAACCTCA--AGAC
* * *
194167857 GCTGAGGTAATTTT-AATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAG
1 GTTGAGGT-ATTTTCAATTTCTG-TTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
* * *
194167921 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAAATCAACT
63 CCTCAAGACA-GCTGAGGTAATTTCAATTTCTG--TTT----------GTC--AAAAAATCAACT
* * *
194167986 CATATTGTGAGAGGTGAGTTGAGCCTCAAGAC
113 CATATTGCGAGAAGTGAGTTGAACCTCAAGAC
* *
194168018 GCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTCAAAAATCCAACTCATATTGCGAGAG
1 GTTGAGGTATTTTCAATTT-C---TGT---TTTA-----AAAAAAT-CAACTCATATTGCGAGAG
* * * * * * *
194168083 CTGAGTTGAGCCTC-GGCTCACGTGCTAAGGTATTTTCAATTTCTACTTT-TCAAAAGAATCAAC
53 GTGAGTTGAACCTCAAG---AC-AGCTGAGGTAATTTCAATTTCT-GTTTGTCAAAA-AATCAAC
* * *
194168146 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
112 TCATATTGCGAGAAGTGAGTTGAACCTCA--AGAC
* *
194168181 GCTGAGGTAATTTT-AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 GTTGAGGT-ATTTTCAATTTCTG-TTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
* *
194168245 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTT-TCAAAAAA
63 CCTCAAGACA-GCTGAGGTAATTTCAATTTCTGT-TTGTCAAAAAA
194168290 AAAATAAAAA
Statistics
Matches: 999, Mismatches: 99, Indels: 285
0.72 0.07 0.21
Matches are distributed among these distances:
144 4 0.00
145 1 0.00
146 43 0.04
147 5 0.01
148 107 0.11
149 5 0.01
150 91 0.09
151 1 0.00
152 68 0.07
153 17 0.02
154 3 0.00
157 8 0.01
158 49 0.05
159 16 0.02
160 14 0.01
161 80 0.08
162 29 0.03
163 57 0.06
164 32 0.03
165 13 0.01
166 93 0.09
167 21 0.02
168 65 0.07
169 8 0.01
171 34 0.03
172 34 0.03
173 14 0.01
174 23 0.02
175 3 0.00
177 7 0.01
178 31 0.03
179 4 0.00
180 8 0.01
181 4 0.00
182 7 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (144 bp):
GTTGAGGTATTTTCAATTTCTGTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
CAAGACAGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAAGTGAG
TTGAACCTCAAGAC
Found at i:194167404 original size:15 final size:14
Alignment explanation
Indices: 194167368--194167400 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
194167358 CGCTGAGGTA
194167368 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
194167382 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
194167396 TTTTC
1 TTTTC
194167401 CAAAAACACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:194167406 original size:91 final size:92
Alignment explanation
Indices: 194167231--194167480 Score: 280
Period size: 91 Copynumber: 2.8 Consensus size: 92
194167221 TGTCAAAAAT
* * * * *
194167231 CAACTCATATTGCGAGAGGTGAGTTGAACCTC-A---AGACGCTGAGGTGTTTTCCATTTCTGTT
1 CAACTCATATTGCGAGAGATGAGTTGAGCCTCGACTCACACGCTGAGGTATTTTCAATTTCTGTT
*
194167292 CTTC-AATTTCTGTGTTTCAAAAAA-A
66 TTTCAAATTTCTGTGTTTCAAAAAACA
* * * *
194167317 TCAGCTCATATTGCGAGTGATGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGT
1 -CAACTCATATTGCGAGAGATGAGTTGAGCCTCGACTCACACGCTGAGGTATTTTCAATTTCTGT
* *
194167382 TTTTCAAATTT-TGTTTTTCCAAAAACA
65 TTTTCAAATTTCTGTGTTTCAAAAAACA
* * ** **
194167409 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAATTTCTACT
1 CAACTCATATTGCGAGAGATGAGTTGAGCCTCGACTCACACGCTGAGGTATTTTCAATTTCTGTT
194167474 TTTCAAA
66 TTTCAAA
194167481 AGAATCAACT
Statistics
Matches: 135, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
87 27 0.20
88 1 0.01
91 101 0.75
92 6 0.04
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36
Consensus pattern (92 bp):
CAACTCATATTGCGAGAGATGAGTTGAGCCTCGACTCACACGCTGAGGTATTTTCAATTTCTGTT
TTTCAAATTTCTGTGTTTCAAAAAACA
Found at i:194167563 original size:75 final size:75
Alignment explanation
Indices: 194167382--194168290 Score: 435
Period size: 75 Copynumber: 11.3 Consensus size: 75
194167372 CAAATTCTGT
* *
194167382 TTTTCAAATTT-TGTTTTTCCAAAAACA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGC
1 TTTTC-AATTTCTATTTTT-CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-
*
194167444 TCACGTGCTGAGGTA
63 ACAC--GCTGAGGTA
* *
194167459 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
194167524 CGCTGAGGTAA
66 CGCTGAGGT-A
* *
194167535 TTTT-AATTTCTATTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
194167599 CGTTGAGGTA
66 CGCTGAGGTA
* * *
194167609 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAAAAAAATCAAATCATATTGCGAGAGGTAAGTTGA
1 TTTTCAATTTCTAT-TTT----------TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
194167674 GCCTCA--AGACGCTGAGGTA
55 GCCTCAGGACACGCTGAGGTA
**
194167693 TTTTTTCCGTTTTTCAATTTATTTTTC--AAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGC
1 --TTTT-C-AATTTC----TATTTTTCAAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGC
*
194167756 CTC--GACTCACGTGCTAAGGTA
57 CTCAGGA--CAC--GCTGAGGTA
* * * * **
194167777 TTTTCAATTTCTGCTTTTT-AATTTCTACTTTTCAAAA-GAA-TCA-ACT-C-ATATTGCAAGAG
1 TTTTCAATTTCT-ATTTTTCAA-----A------AAAATCAACTCATATTGCGAGA--G-GTGAG
* * * ** * *
194167836 GTGAG-TTGAGCCTCAGGAC--ACGCTGA
51 TTGAGCCTCAG-GACACG-CTGA-GGT-A
* * * * *
194167862 GGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAA
1 --T-TTTC-AATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
194167927 GACACGTTGAGGTA
62 GACACGCTGAGGTA
* * * * *
194167941 TTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAAATCAACTCATAT-TGTGAGAGGTGAGT
1 TTTTCAATTTCTATTTTTC---AAAAAAATC-----AACTC-A-T-AT-TGCGAGA--GGTGAGT
*
194168005 TGAGCCTCA--AGACGCTGAGGTA
52 TGAGCCTCAGGACACGCTGAGGTA
*** *
194168027 TTTTCAATTTCCGTTTGTCAATTTATTTTTCAAAAATCCAACTCATATTGCGAGAGCTGAGTTGA
1 TTTTCAATTT-C-----T--A-TT-TTTCAAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGA
* *
194168092 GCCTC-GGCTCACGTGCTAAGGTA
55 GCCTCAGG-ACAC--GCTGAGGTA
* *
194168115 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
194168180 CGCTGAGGTAA
66 CGCTGAGGT-A
* *
194168191 TTTT-AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
194168255 CGTTGAGGTA
66 CGCTGAGGTA
* *
194168265 TTTTCAATTTCTGTCTTTCAAAAAAA
1 TTTTCAATTTCTATTTTTCAAAAAAA
194168291 AAATAAAAAA
Statistics
Matches: 643, Mismatches: 89, Indels: 202
0.69 0.10 0.22
Matches are distributed among these distances:
74 10 0.02
75 184 0.29
76 27 0.04
77 85 0.13
78 25 0.04
79 10 0.02
80 51 0.08
81 9 0.01
82 8 0.01
83 10 0.02
84 39 0.06
85 8 0.01
86 89 0.14
87 8 0.01
88 46 0.07
89 17 0.03
91 3 0.00
92 3 0.00
93 6 0.01
94 1 0.00
95 1 0.00
96 3 0.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (75 bp):
TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTA
Found at i:194167799 original size:14 final size:14
Alignment explanation
Indices: 194167777--194167811 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
194167767 TGCTAAGGTA
*
194167777 TTTTCAATTTCTGC
1 TTTTCAATTTCTAC
*
194167791 TTTTTAATTTCTAC
1 TTTTCAATTTCTAC
194167805 TTTTCAA
1 TTTTCAA
194167812 AAGAATCAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.03, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:194167828 original size:332 final size:334
Alignment explanation
Indices: 194167133--194168582 Score: 1900
Period size: 332 Copynumber: 4.4 Consensus size: 334
194167123 CGTTGAGGTA
** * * * * *
194167133 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAAGTGAGTTGAACCTCA--AGA
1 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * * * * *
194167196 CGCTGAGGTAATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
66 CGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAG
* * * ******** *
194167259 CCTCAAG--ACGCTGAGGTGTTTTCCATTTCTGT-TCTTCAATTTCTGTGTTTCAAAAAAATCAG
131 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCT-TTCAA--AAAAAAAATCAAAAAAATCAA
* * * * * * *
194167321 CTCATATTGCGAGTGATGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGTTTTT
193 CTCATATTGCGAGAGGTGAGTTGAGCC-T--C-AAGACGCTGAGGTATTTT--ATTTCCGTTTGT
* * *
194167386 CAAATTTTGTTTTTCCAAAAA-CACAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGT
252 C-AA-TTTATTTTT-CAAAAATC-CAACTCATATTGCGAGAGATGAGTTGAGCCTCGACTCACGT
*
194167450 GCTGAGG----T--A-------
313 GCTAAGGTATTTCAATTTCTGC
194167459 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
194167524 CGCTGAGGTAATTTTAATTTCTATTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAG
66 CGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAG
*
194167589 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTC-AAAAAAAAATCAAAAAAATCAAATC
131 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAATCAACTC
* *
194167653 ATATTGCGAGAGGTAAGTTGAGCCTCAAGACGCTGAGGTA-TTT-TTTCCGTTTTTCAATTTATT
196 ATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTATTTCCGTTTGTCAATTTATT
*
194167716 TTTCAAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACGTGCTAAGGTATTTT
261 TTTCAAAAATCCAACTCATATTGCGAGAGATGAGTTGAGCCTCGACTCACGTGCTAAGGTA-TTT
194167781 CAATTTCTGC
325 CAATTTCTGC
* *
194167791 TTTTTAATTTCTACTTTTCAAAAGAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
194167856 CGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAG
66 CGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAG
194167921 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAAATCAACT
131 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATC-AAAAAAATCAACT
*
194167986 CATATTGTGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTT
195 CATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTT--ATTTCCGTTTGTCAATTT
* *
194168051 ATTTTTCAAAAATCCAACTCATATTGCGAGAGCTGAGTTGAGCCTCGGCTCACGTGCTAAGG---
258 ATTTTTCAAAAATCCAACTCATATTGCGAGAGATGAGTTGAGCCTCGACTCACGTGCTAAGGTAT
194168113 -T--A-------
323 TTCAATTTCTGC
194168115 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
194168180 CGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
66 CGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAG
*
194168245 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATAAAAAAAAAATCAAC
131 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAAT--CAAAAAAATCAAC
194168310 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATT
194 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTT--ATTTCCGTTTGTCAATT
*
194168375 TATTTTTCAAAAATCCAACTCATATTGCGAGAGATGAGTTGAGCCTC-AGCTCACGTGCTGAGGT
257 TATTTTTCAAAAATCCAACTCATATTGCGAGAGATGAGTTGAGCCTCGA-CTCACGTGCTAAGGT
194168439 ACTTTCAATTTCTGC
321 A-TTTCAATTTCTGC
194168454 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * * *
194168519 CGTTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACTCGTATTACGAA-AGGTGAGTTGA
66 CGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTAC-AAGAGGTGAGTTGA
194168582 G
130 G
194168583 TCTCGGGCCA
Statistics
Matches: 1017, Mismatches: 61, Indels: 80
0.88 0.05 0.07
Matches are distributed among these distances:
318 52 0.05
319 9 0.01
320 2 0.00
321 10 0.01
323 1 0.00
324 180 0.18
325 148 0.15
326 55 0.05
328 28 0.03
329 35 0.03
330 40 0.04
331 2 0.00
332 190 0.19
333 13 0.01
334 51 0.05
335 3 0.00
338 111 0.11
339 87 0.09
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (334 bp):
TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAG
CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAATCAACTC
ATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTATTTCCGTTTGTCAATTTATT
TTTCAAAAATCCAACTCATATTGCGAGAGATGAGTTGAGCCTCGACTCACGTGCTAAGGTATTTC
AATTTCTGC
Found at i:194168160 original size:249 final size:237
Alignment explanation
Indices: 194167058--194168275 Score: 813
Period size: 249 Copynumber: 5.0 Consensus size: 237
194167048 CGTTGTGGTA
* * * * * * *
194167058 TTTTCAATTTCT-GTCTTTAAAAAAAATCAGCTCATATTGCGAGAAG-TGAGTTGAACCTCAAGA
1 TTTTCAATTTCTACT-TTTCAAAAGAATCAACTCATATTGCAAG-AGCTGAGTTGAGCCTCAGGA
* * ** * * *
194167121 CACGTTGAGGT-ATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAAGTGAGTT
64 CACGCTAAGGTAATTTT-AATTTCTACTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTT
* * * *
194167185 GAACCTCAAG--ACGCTGAGGTAATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGA
128 GAGCCTCAAGACACGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGA
* * * *
194167246 GAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCTG-
193 GAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGC
* * * * * * * *
194167290 TTCTTCAATTTCT-GTGTTTCAAAAAAATCAGCTCATATTGCGAGTGATGAGTTGAGCCTTGACT
1 TT-TTCAATTTCTACT-TTTCAAAAGAATCAACTCATATTGCAAGAGCTGAGTTGAGCC-TCA-G
* * * ** *
194167354 CACACGCTGAGGT-ATTTTCAAATTCTGTTTTTCAAATTTTGTTTTTCCAAAAACACAACTCATA
62 GACACGCTAAGGTAATTTT-AATTTCTACTTTTC-AA------------AAAAA-TCAACTCATA
* * * **
194167418 TTGCGAGAGGTGAGTTGAGCCTC-GGCTCACGTGCTGAGGT-ATTTTCAATTTCTACTTTTCAAA
112 TTACGAGAGGTGAGTTGAGCCTCAAG-ACAC--GCTGAGGTAATTTT-AATTTCTGTTTTTCAAA
* *
194167481 AGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG-----T-AA-----
173 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--AGACGCTGAGGTATTTTCAATTTCC
194167535 --
236 GC
* * * *
194167535 TTTT-AATTTCTATTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCAAGAGCTGAGTTGAGCCTCAGGACA
* * * * *
194167599 CGTTGAGGT-ATTTTCAATTTCTGTCTTTCAAAAAAAAATCAAAAAAATCAAATCATATTGCGAG
66 CGCTAAGGTAATTTT-AATTTCT-ACTTT----------TCAAAAAAATCAACTCATATTACGAG
* * ** *
194167663 AGGTAAGTTGAGCCTCAAG--ACGCTGAGGTATTTTTTCCGTTTTTCAATTTATTTTTC--AAAA
119 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTA-ATTTT---AATTTC----TGTTTTTCAAAAAA
** * *
194167724 ATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACGTGCTAAGGTATTTTCAATTTCT
176 AT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTC-A-AGAC--GCTGAGGTATTTTCAATTTCC
194167789 GC
236 GC
* *
194167791 TTTTTAATTTCTACTTTTCAAAAGAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCAAGAGCTGAGTTGAGCCTCAGGACA
* **
194167856 CGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAG
66 CGCTAAGGTAATTTTAATTTCTACTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAG
*
194167921 CCTCAAGACACGTTGAGGT-ATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAAATCAAC
131 CCTCAAGACACGCTGAGGTAATTTT-AATTTCTGT-TTT-----------TC-AAAAAAATCAAC
*
194167985 TCATATTGTGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCG-
182 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGC
* *
194168040 TTTGTCAA-TT-TATTTTTC-AAA-AATCCAACTCATATTGCGAGAGCTGAGTTGAGCCTC-GGC
1 TTT-TCAATTTCTACTTTTCAAAAGAAT-CAACTCATATTGCAAGAGCTGAGTTGAGCCTCAGG-
* * *
194168100 TCACGTGCTAAGGT-ATTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGA
63 ACAC--GCTAAGGTAATTTT-AATTTCTACTTTTCAAAAAAATCAACTCATATTACGAGAGGTGA
*
194168164 GTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTG
125 GTTGAGCCTCAAGACACGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTG
*
194168229 CGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
190 CGAGAGGTGAGTTGAGCCTCAAG--ACGCTGAGGTATTTTCAATTTC
194168276 TGTCTTTCAA
Statistics
Matches: 810, Mismatches: 82, Indels: 182
0.75 0.08 0.17
Matches are distributed among these distances:
232 3 0.00
233 49 0.06
234 10 0.01
235 30 0.04
236 50 0.06
237 2 0.00
238 55 0.07
239 6 0.01
240 7 0.01
241 61 0.08
242 13 0.02
243 51 0.06
244 7 0.01
245 2 0.00
246 51 0.06
247 36 0.04
248 31 0.04
249 115 0.14
250 28 0.03
251 5 0.01
252 11 0.01
253 19 0.02
254 31 0.04
255 43 0.05
256 7 0.01
257 82 0.10
258 5 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (237 bp):
TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCAAGAGCTGAGTTGAGCCTCAGGACA
CGCTAAGGTAATTTTAATTTCTACTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAG
CCTCAAGACACGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAG
GTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGC
Found at i:194168209 original size:324 final size:323
Alignment explanation
Indices: 194167079--194168582 Score: 1982
Period size: 324 Copynumber: 4.6 Consensus size: 323
194167069 TGTCTTTAAA
* * * * *
194167079 AAAAAT-CAGCTCATATTGCGAGAAGTGAGTTGAACCTCAAG-ACACGT--TGAGGTATTTTCAA
1 AAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACGTGCTGAGGTATTTTCAA
** * * * * *
194167140 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAAGTGAGTTGAACCTCA--AGACGCTGAG
65 TTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * * *
194167203 GTAATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG
130 GTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
* * * ******** *
194167266 --ACGCTGAGGTGTTTTCCATTTCTGT-TCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATAT
195 ACACGTTGAGGTATTTTCAATTTCTGTCT-TTCAA--AAAAAAAATCAAAAAAATCAACTCATAT
* * * * * * *
194167328 TGCGAGTGATGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAATTCTGTTTTTCAAATTT
257 TGCGAGAGGTGAGTTGAGCC-T--C-AAGACGCTGAGGTATTTTCAATTTCCGTTTGTC-AA-TT
*
194167393 TGTTTTTCC
316 TATTTTT-C
194167402 AAAAA-CACAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAA
1 AAAAATC-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAA
194167466 TTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
65 TTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* *
194167531 GTAATTTTAATTTCTATTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAG
130 GTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
*
194167596 ACACGTTGAGGTATTTTCAATTTCTGTCTTTC-AAAAAAAAATCAAAAAAATCAAATCATATTGC
195 ACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAATCAACTCATATTGC
* *
194167660 GAGAGGTAAGTTGAGCCTCAAGACGCTGAGGTA-TTT---TTTCCGTTTTTCAATTTATTTTTC
260 GAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
* *
194167720 AAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACGTGCTAAGGTATTTTCAAT
1 AAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGG-----T--AT
*
194167785 TTCTGCTTTTTAATTTCTACTTTTCAAAAGAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC
59 TT-T-C-----AATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
194167850 AGGACACGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTACGAGAGGTGA
117 AGGACACGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
194167915 GTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAAA
182 GTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATC-AAAAAAA
*
194167980 TCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGT
246 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGT
194168045 CAATTTATTTTTC
311 CAATTTATTTTTC
* *
194168058 AAAAATCCAACTCATATTGCGAGAGCTGAGTTGAGCCTCGGCTCACGTGCTAAGGTATTTTCAAT
1 AAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAAT
194168123 TTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
66 TTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
194168188 TAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
131 TAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
*
194168253 CACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATAAAAAAAAAATCAACTCATATTG
196 CACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAAT--CAAAAAAATCAACTCATATTG
194168318 CGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
259 CGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
* *
194168383 AAAAATCCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGCTCACGTGCTGAGGTACTTTCAAT
1 AAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGG-----T--A-
194168448 TTCTGCTTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
58 ------TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * * * * *
194168513 AGGACACGTTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACTCGTATTACGAAAGGTGA
117 AGGACACGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
194168577 GTTGAG
182 GTTGAG
194168583 TCTCGGGCCA
Statistics
Matches: 1068, Mismatches: 64, Indels: 83
0.88 0.05 0.07
Matches are distributed among these distances:
318 52 0.05
319 9 0.01
320 2 0.00
321 10 0.01
323 7 0.01
324 210 0.20
325 152 0.14
326 63 0.06
327 1 0.00
328 28 0.03
329 36 0.03
330 41 0.04
331 5 0.00
332 186 0.17
333 13 0.01
334 51 0.05
335 3 0.00
338 113 0.11
339 86 0.08
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (323 bp):
AAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATTTTCAAT
TTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
CACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
Found at i:194168460 original size:14 final size:14
Alignment explanation
Indices: 194168441--194168474 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
194168431 GCTGAGGTAC
*
194168441 TTTCAATTTCTGCT
1 TTTCAATTTCTACT
194168455 TTTCAATTTCTACT
1 TTTCAATTTCTACT
194168469 TTTCAA
1 TTTCAA
194168475 AAGAATCAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.03, T:0.56
Consensus pattern (14 bp):
TTTCAATTTCTACT
Found at i:194168506 original size:175 final size:172
Alignment explanation
Indices: 194168211--194168548 Score: 430
Period size: 175 Copynumber: 1.9 Consensus size: 172
194168201 TGTTTTTCAA
* *
194168211 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTACTTTCAATTTC
194168276 TGTCTTTCAAAAAAAAAATAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A
66 TGTCTTTCAAAAAAAAAATAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA
* *
194168340 GACGCTGAGGTATTTTCAATTTCCGTTTGTCAATTTATTTTTC
131 CACGCTGAGGTAATTTCAATTTCCG-TTGTCAATTTATTTTTC
*
194168383 AAAAATCCAACTCATATTGCGAGAGATGAGTTGAGCCTC-AGCTCACGTGCTGAGGTACTTTCAA
1 AAAAAT-CAACTCATATTGCGAGAGATGAGTTGAGCCTCAAG-ACACGT--TGAGGTACTTTCAA
***** ** *** *
194168447 TTTCTG-CTTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
62 TTTCTGTC-TTTCAAAAAAAAAATAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
194168511 TCAGGACACGTTGAGGTAATTTCAATTTCTGTTGTCAA
126 TCA-GACACGCTGAGGTAATTTCAATTTCCGTTGTCAA
194168549 AAAAATCAAC
Statistics
Matches: 141, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
172 8 0.06
173 36 0.26
174 1 0.01
175 67 0.48
176 7 0.05
177 22 0.16
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (172 bp):
AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTACTTTCAATTTC
TGTCTTTCAAAAAAAAAATAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA
CACGCTGAGGTAATTTCAATTTCCGTTGTCAATTTATTTTTC
Found at i:194168653 original size:14 final size:15
Alignment explanation
Indices: 194168618--194168650 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
194168608 TCAAATTCCG
*
194168618 TTTTCAATTTCTGCT
1 TTTTCAATTTATGCT
194168633 TTTTCAATTTATGCT
1 TTTTCAATTTATGCT
194168648 TTT
1 TTT
194168651 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.15, G:0.06, T:0.64
Consensus pattern (15 bp):
TTTTCAATTTATGCT
Found at i:194169620 original size:16 final size:17
Alignment explanation
Indices: 194169588--194169624 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
194169578 TATATATGTA
194169588 TATT-TTTTATACATAT
1 TATTATTTTATACATAT
*
194169604 TATTATTTTATA-TTAT
1 TATTATTTTATACATAT
194169620 TATTA
1 TATTA
194169625 CCAAATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (17 bp):
TATTATTTTATACATAT
Found at i:194170138 original size:18 final size:18
Alignment explanation
Indices: 194170117--194170161 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
194170107 AAAATTCAGG
194170117 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
194170135 TTTC-AAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
194170152 TTT-AAAAATT
1 TTTCAAAAATT
194170162 CTCATTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:194171544 original size:12 final size:12
Alignment explanation
Indices: 194171527--194171562 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
194171517 ATTCATTTGA
194171527 CATTCATGCATT
1 CATTCATGCATT
*
194171539 CATTCATGCATC
1 CATTCATGCATT
*
194171551 CATTCATTCATT
1 CATTCATGCATT
194171563 GCATAACCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:194171556 original size:16 final size:17
Alignment explanation
Indices: 194171535--194171566 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
194171525 GACATTCATG
194171535 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
194171551 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
194171567 AACCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:194180481 original size:39 final size:40
Alignment explanation
Indices: 194180381--194180562 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
194180371 TCGAATGATG
* * *
194180381 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
194180421 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
194180461 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
194180499 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
194180540 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
194180563 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:194180526 original size:78 final size:80
Alignment explanation
Indices: 194180381--194180562 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
194180371 TCGAATGATG
* * * *
194180381 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
194180446 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
194180461 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
194180523 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
194180540 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
194180563 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:194188497 original size:39 final size:40
Alignment explanation
Indices: 194188397--194188578 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
194188387 TCGAATGATG
* * *
194188397 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
194188437 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
194188477 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
194188515 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
194188556 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
194188579 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:194188542 original size:78 final size:80
Alignment explanation
Indices: 194188397--194188578 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
194188387 TCGAATGATG
* * * *
194188397 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
194188462 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
194188477 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
194188539 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
194188556 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
194188579 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:194190457 original size:79 final size:79
Alignment explanation
Indices: 194190323--194190484 Score: 193
Period size: 79 Copynumber: 2.1 Consensus size: 79
194190313 TTGAATGATA
* * * **
194190323 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCGAAGGC-ATTCG
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCATATCCGGGCTAAGACCGAAGGCAATT-G
*
194190387 TGCGAGTTGTTATAT
65 TGCGAGTGGTTATAT
* * *
194190402 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCA-ATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCATATCCGGGCTAAGA-CCGAAGGCAATTG
**
194190466 TGCTTGTGGTTATAT
65 TGCGAGTGGTTATAT
194190481 CCGG
1 CCGG
194190485 TTAAATCCCG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
78 12 0.17
79 55 0.79
80 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCAAGTGACCATATCCGGGCTAAGACCGAAGGCAATTGT
GCGAGTGGTTATAT
Found at i:194190488 original size:39 final size:40
Alignment explanation
Indices: 194190323--194190484 Score: 179
Period size: 39 Copynumber: 4.1 Consensus size: 40
194190313 TTGAATGATA
* * *
194190323 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
194190363 CCGGGCTAAGA-CCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * **
194190402 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCA-AT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
194190441 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
194190481 CCGG
1 CCGG
194190485 TTAAATCCCG
Statistics
Matches: 101, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 63 0.62
40 33 0.33
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:194198493 original size:39 final size:40
Alignment explanation
Indices: 194198412--194198515 Score: 142
Period size: 39 Copynumber: 2.6 Consensus size: 40
194198402 CATTTGAATG
* *
194198412 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCTAGTGATT
*
194198452 ATATCCGGGCTAAGACCC-AAGGCATTCGTG-TGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCT-AG-TGATT
194198491 ATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
194198516 ATTGTGCAAG
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
38 1 0.02
39 32 0.55
40 25 0.43
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCATGCTAGTGATT
Found at i:194198577 original size:40 final size:40
Alignment explanation
Indices: 194198412--194198578 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
194198402 CATTTGAATG
* * * *
194198412 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTT
*
194198452 ATATCCGGGCTAAGACCC-AAGGC-ATTCGTG-TGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCT-AGTGGTT
* ****
194198491 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGGTT
* *
194198532 A-ATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTT
194198571 ATATCCGG
1 ATATCCGG
194198579 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 32 0.31
40 63 0.61
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTT
Found at i:194205883 original size:21 final size:21
Alignment explanation
Indices: 194205859--194205899 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
194205849 TAAAACAATT
*
194205859 TTATTTAACAACTAACTTTAA
1 TTATCTAACAACTAACTTTAA
* *
194205880 TTATCTATCAATTAACTTTA
1 TTATCTAACAACTAACTTTA
194205900 TAAACTCGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (21 bp):
TTATCTAACAACTAACTTTAA
Found at i:194206769 original size:543 final size:543
Alignment explanation
Indices: 194205742--194206830 Score: 2106
Period size: 543 Copynumber: 2.0 Consensus size: 543
194205732 CAGTTCTACT
194205742 AGGGGACTTGAATAGCCCATAATTACCAATAGTTCACATTAAAACAAATGAATTTTACACTTTCA
1 AGGGGACTTGAATAGCCCATAATTACCAATAGTTCACATTAAAACAAATGAATTTTACACTTTCA
194205807 ACAATTTAATCCTTAATCCAAAATTCATCAAAAATCACTTAATAAAACAATTTTATTTAACAACT
66 ACAATTTAATCCTTAATCCAAAATTCATCAAAAATCACTTAATAAAACAATTTTATTTAACAACT
*
194205872 AACTTTAATTATCTATCAATTAACTTTATAAACTCGTCAATTTAATTCATAAGATATCCCTCAAC
131 AACTTTAATTATCTATCAATTAACTTTATAAACTCATCAATTTAATTCATAAGATATCCCTCAAC
194205937 CTTTAGCAGTTTTGGAAATTAATCCTCGGGCTAAGTAGTTTAAGCTAAAACGAGCTTAAAAAAAT
196 CTTTAGCAGTTTTGGAAATTAATCCTCGGGCTAAGTAGTTTAAGCTAAAACGAGCTTAAAAAAAT
*
194206002 AAAAATCAATAAAAATAAGGCTAAAATACATACCATACATAAGGAAAAGTTCAAAACCAAAGCTT
261 AAAAATCAATAAAAATAAGGCTAAAATACATACCATACATAAGGAAAAATTCAAAACCAAAGCTT
*
194206067 TCTCCCCTCCTTCAATGGCTATTCGGTTTTGGGATGGAAAAATTAGAAAGATGATTACACTTTTA
326 TCTCCCCTCCTTCAATGGCTATTCAGTTTTGGGATGGAAAAATTAGAAAGATGATTACACTTTTA
*
194206132 CTGTAACACCCCTTACCCGTATCCGACGCCATTATAGGATTCGAGGCGTTACCAAACTTAAACTC
391 CTGTAACACCCCTTACCCGTATCCCACGCCATTATAGGATTCGAGGCGTTACCAAACTTAAACTC
*
194206197 ACTCAAATATACAAAATTGAGACATGAATTTCTGTACAAATTTAAAGCTTTTCATTTACAAGCAA
456 ACTCAAATATACAAAATCGAGACATGAATTTCTGTACAAATTTAAAGCTTTTCATTTACAAGCAA
194206262 AACGTCCCTTATATGGACCAACG
521 AACGTCCCTTATATGGACCAACG
*
194206285 AGGGGACTTGAATAGTCCATAATTACCAATAGTTCACATTAAAACAAATGAATTTTACACTTTCA
1 AGGGGACTTGAATAGCCCATAATTACCAATAGTTCACATTAAAACAAATGAATTTTACACTTTCA
*
194206350 ACAATTTAATCCTTAATCCAAAATTCATCAAAAATCACTTAATAAAATAATTTTATTTAACAACT
66 ACAATTTAATCCTTAATCCAAAATTCATCAAAAATCACTTAATAAAACAATTTTATTTAACAACT
194206415 AACTTTAATTATCTATCAATTAACTTTATAAACTCATCAATTTAATTCATAAGATATCCCTCAAC
131 AACTTTAATTATCTATCAATTAACTTTATAAACTCATCAATTTAATTCATAAGATATCCCTCAAC
194206480 CTTTAGCAGTTTTGGAAATTAATCCTCGGGCTAAGTAGTTTAAGCTAAAACGAGCTTAAAAAAAT
196 CTTTAGCAGTTTTGGAAATTAATCCTCGGGCTAAGTAGTTTAAGCTAAAACGAGCTTAAAAAAAT
194206545 AAAAATCAATAAAAATAAGGCTAAAATACATACCATACATAAGGAAAAATTCAAAACCAAAGCTT
261 AAAAATCAATAAAAATAAGGCTAAAATACATACCATACATAAGGAAAAATTCAAAACCAAAGCTT
194206610 TCTCCCCTCCTTCAATGGCTATTCAGTTTTGGGATGGAAAAATTAGAAAGATGATTACACTTTTA
326 TCTCCCCTCCTTCAATGGCTATTCAGTTTTGGGATGGAAAAATTAGAAAGATGATTACACTTTTA
194206675 CTGTAACACCCCTTACCCGTATCCCACGCCATTATAGGATTCGAGGCGTTACCAAACTTAAACTC
391 CTGTAACACCCCTTACCCGTATCCCACGCCATTATAGGATTCGAGGCGTTACCAAACTTAAACTC
194206740 ACTCAAATATACAAAATCGAGACATGAATTTCTGTACAAATTTAAAGCTTTTCATTTACAAGCAA
456 ACTCAAATATACAAAATCGAGACATGAATTTCTGTACAAATTTAAAGCTTTTCATTTACAAGCAA
*
194206805 AACGTCCCTTATATGGGCCAACG
521 AACGTCCCTTATATGGACCAACG
194206828 AGG
1 AGG
194206831 CCCAAAATGC
Statistics
Matches: 538, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
543 538 1.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (543 bp):
AGGGGACTTGAATAGCCCATAATTACCAATAGTTCACATTAAAACAAATGAATTTTACACTTTCA
ACAATTTAATCCTTAATCCAAAATTCATCAAAAATCACTTAATAAAACAATTTTATTTAACAACT
AACTTTAATTATCTATCAATTAACTTTATAAACTCATCAATTTAATTCATAAGATATCCCTCAAC
CTTTAGCAGTTTTGGAAATTAATCCTCGGGCTAAGTAGTTTAAGCTAAAACGAGCTTAAAAAAAT
AAAAATCAATAAAAATAAGGCTAAAATACATACCATACATAAGGAAAAATTCAAAACCAAAGCTT
TCTCCCCTCCTTCAATGGCTATTCAGTTTTGGGATGGAAAAATTAGAAAGATGATTACACTTTTA
CTGTAACACCCCTTACCCGTATCCCACGCCATTATAGGATTCGAGGCGTTACCAAACTTAAACTC
ACTCAAATATACAAAATCGAGACATGAATTTCTGTACAAATTTAAAGCTTTTCATTTACAAGCAA
AACGTCCCTTATATGGACCAACG
Found at i:194219484 original size:40 final size:40
Alignment explanation
Indices: 194219439--194219605 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
194219429 CGGAATATAA
194219439 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
194219479 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
194219519 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
194219559 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
194219598 CCGGATAT
1 CCGGATAT
194219606 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:194219589 original size:80 final size:79
Alignment explanation
Indices: 194219439--194219605 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
194219429 CGGAATATAA
* *
194219439 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
194219504 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
194219519 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
194219581 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
194219598 CCGGATAT
1 CCGGATAT
194219606 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:194220450 original size:17 final size:19
Alignment explanation
Indices: 194220427--194220472 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
194220417 AAGAAGCATG
194220427 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
194220445 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
194220463 AATCATGCTC
1 AATCATGCTC
194220473 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:194226196 original size:40 final size:39
Alignment explanation
Indices: 194226105--194226252 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 39
194226095 ATAAGCATGT
* *
194226105 GCACAAATGCCTTCGGGTCTTAGCCTGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
194226145 GCACGAATGCCTTCAGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
194226185 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
194226225 GCATAATTGTCTTCGGGGCTTAGCCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
194226253 GTATCATTCA
Statistics
Matches: 87, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
39 4 0.05
40 81 0.93
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Done.