Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 621 of 770
Found at i:194623936 original size:94 final size:95
Alignment explanation
Indices: 194623772--194623943 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 95
194623762 TTATGAGAGC
* * * *
194623772 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGATATTTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCT
194623837 AGGACAT-GCATCAGCTACGAGATGATAGT
66 AGGACATGGCATCAGCTACGAGATGATAGT
* * *
194623866 CAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGGGATGTGAGCCAGTGTAAGACCATGTC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGA-CATGTC
*
194623930 TGGGACATGGCATC
65 TAGGACATGGCATC
194623944 GGCACCTTCC
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
93 19 0.28
94 44 0.65
95 5 0.07
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (95 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCT
AGGACATGGCATCAGCTACGAGATGATAGT
Found at i:194623939 original size:47 final size:47
Alignment explanation
Indices: 194623768--194623944 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 47
194623758 CACATTATGA
* * *
194623768 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGATGT
* * * * *
194623816 GAGCTAGTGTAAGA-TATTTCTAGGACAT-GCATC-AGCTACGAGATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CT-TGAGATG-T
* *
194623863 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGGGATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGT
194623909 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
194623945 GCACCTTCCC
Statistics
Matches: 106, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 23 0.22
47 61 0.58
48 20 0.19
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGT
Found at i:194625115 original size:21 final size:20
Alignment explanation
Indices: 194625086--194625124 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
194625076 TCGAGTTGGT
*
194625086 CACACGAGCGTGTTGCCCTTC
1 CACACGAGCGCG-TGCCCTTC
*
194625107 CACATGAGCGCGTGCCCT
1 CACACGAGCGCGTGCCCT
194625125 GTTTTAAGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.15, C:0.38, G:0.26, T:0.21
Consensus pattern (20 bp):
CACACGAGCGCGTGCCCTTC
Found at i:194631585 original size:40 final size:40
Alignment explanation
Indices: 194631483--194631666 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
194631473 AAATTGAATG
* * * * *
194631483 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
194631523 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
194631563 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
194631603 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
194631643 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
194631667 CTTGATGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:194646674 original size:37 final size:38
Alignment explanation
Indices: 194646629--194646734 Score: 187
Period size: 37 Copynumber: 2.8 Consensus size: 38
194646619 TCAATCATGC
* *
194646629 ACTGGGCCGTAGCCCTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
194646667 ACT-GGCCGAAGCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
194646704 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
194646735 ACTGGGCCGA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 35 0.54
38 30 0.46
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:194646726 original size:31 final size:31
Alignment explanation
Indices: 194646688--194646751 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
194646678 CCTTTTCATA
194646688 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
194646719 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
194646750 TT
1 TT
194646752 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:194646988 original size:24 final size:24
Alignment explanation
Indices: 194646942--194647013 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
194646932 GCTTTATCAT
*
194646942 ATAACTGGAGGCC-TAGCCTCTTTTA
1 ATAACTGG-GGCCAAAGCC-CTTTTA
*
194646967 ATAACTGGGGCCAAAGCCCTTTCA
1 ATAACTGGGGCCAAAGCCCTTTTA
194646991 ATAACTGGGG-CATAAGCCCTTTT
1 ATAACTGGGGCCA-AAGCCCTTTT
194647014 TCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 2 0.05
24 28 0.67
25 12 0.29
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCCAAAGCCCTTTTA
Found at i:194647089 original size:20 final size:20
Alignment explanation
Indices: 194647064--194647123 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
194647054 TATGATTACC
194647064 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
194647084 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
194647104 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
194647124 CCGTATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:194647198 original size:25 final size:25
Alignment explanation
Indices: 194647166--194647213 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
194647156 ATATATAAAC
* * *
194647166 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
194647191 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
194647214 CATGGTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:194650037 original size:16 final size:16
Alignment explanation
Indices: 194650016--194650046 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
194650006 TGGTGACCGT
194650016 GAATTACAAGTTAAAC
1 GAATTACAAGTTAAAC
194650032 GAATTACAAGTTAAA
1 GAATTACAAGTTAAA
194650047 AGCTAAATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.10, G:0.13, T:0.26
Consensus pattern (16 bp):
GAATTACAAGTTAAAC
Found at i:194651649 original size:32 final size:32
Alignment explanation
Indices: 194651608--194651675 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
194651598 ATAGATTTTG
194651608 AATGATGCCATTATTGAATGCTTGGTTGTTTA
1 AATGATGCCATTATTGAATGCTTGGTTGTTTA
* *
194651640 AATGATGCCATTGTTGAATGGTTGGTTGTTTA
1 AATGATGCCATTATTGAATGCTTGGTTGTTTA
194651672 AATG
1 AATG
194651676 TTTAATGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.25, C:0.07, G:0.25, T:0.43
Consensus pattern (32 bp):
AATGATGCCATTATTGAATGCTTGGTTGTTTA
Found at i:194652393 original size:22 final size:22
Alignment explanation
Indices: 194652368--194652418 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
194652358 TGGCTCATTG
194652368 GAACTTATTGTTCAGCTCGATA
1 GAACTTATTGTTCAGCTCGATA
*
194652390 GAACTTATTGTTTAGCTCGATA
1 GAACTTATTGTTCAGCTCGATA
*
194652412 GAGCTTA
1 GAACTTA
194652419 CCATTTCAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (22 bp):
GAACTTATTGTTCAGCTCGATA
Found at i:194652479 original size:25 final size:25
Alignment explanation
Indices: 194652424--194652488 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
194652414 GCTTACCATT
*
194652424 TCAGCTCAATAGAGCTTACTGTCCA
1 TCAGCTCAAGAGAGCTTACTGTCCA
194652449 TCAGCTCAAGAGGAGCTTACTGAT-CA
1 TCAGCTCAAGA-GAGCTTACTG-TCCA
*
194652475 T-AGCTCAAAAGAGC
1 TCAGCTCAAGAGAGC
194652489 GTATATGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
24 4 0.11
25 18 0.50
26 13 0.36
27 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (25 bp):
TCAGCTCAAGAGAGCTTACTGTCCA
Found at i:194656822 original size:40 final size:40
Alignment explanation
Indices: 194656673--194656856 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
194656663 TCGAATGATG
* * *
194656673 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
194656713 TCCGGACTAAGAT-CCGAAGGCATTCGTGTGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
194656753 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
194656793 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
194656834 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
194656857 AGAACGAGTA
Statistics
Matches: 126, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.93
41 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:194656865 original size:80 final size:79
Alignment explanation
Indices: 194656726--194656881 Score: 176
Period size: 80 Copynumber: 2.0 Consensus size: 79
194656716 GGACTAAGAT
* * **
194656726 CCGAAGGCATTCGTGTGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTAGAACGAG-TAGCT
194656790 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* *
194656806 CCGAAGGCA-TCTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTAGAACGAGTAG
1 CCGAAGGCATTC-GTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTAGAACGAGTAG
*
194656868 CTATATCCGGTTAA
63 CTAAATCCGGTTAA
194656882 ACTCCGAAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
79 11 0.17
80 52 0.80
81 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTAGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:194658504 original size:25 final size:25
Alignment explanation
Indices: 194658476--194658533 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
194658466 ATATTCTGTA
*
194658476 AAGCTTTTGTAAAGAACTCTTTGTG
1 AAGCCTTTGTAAAGAACTCTTTGTG
**
194658501 AAGCCTTTGTGGAGAACTCTTTGTG
1 AAGCCTTTGTAAAGAACTCTTTGTG
*
194658526 GAGCCTTT
1 AAGCCTTT
194658534 ATGGTGAACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.38
Consensus pattern (25 bp):
AAGCCTTTGTAAAGAACTCTTTGTG
Found at i:194658524 original size:14 final size:14
Alignment explanation
Indices: 194658488--194658528 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
194658478 GCTTTTGTAA
194658488 AGAACTCTTTGT-G
1 AGAACTCTTTGTGG
*
194658501 A-AGC-CTTTGTGG
1 AGAACTCTTTGTGG
194658513 AGAACTCTTTGTGG
1 AGAACTCTTTGTGG
194658527 AG
1 AG
194658529 CCTTTATGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
11 6 0.26
12 4 0.17
13 3 0.13
14 10 0.43
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (14 bp):
AGAACTCTTTGTGG
Found at i:194658542 original size:25 final size:25
Alignment explanation
Indices: 194658488--194658563 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 25
194658478 GCTTTTGTAA
*
194658488 AGAACTCTTTGTGAAGCCTTTGTGG
1 AGAACTCTTTGTGAAGCCTTTATGG
*
194658513 AGAACTCTTTGTGGAGCCTTTATGG
1 AGAACTCTTTGTGAAGCCTTTATGG
* * * * *
194658538 TGAACTCTCTATGAAGTCTTTGTGG
1 AGAACTCTTTGTGAAGCCTTTATGG
194658563 A
1 A
194658564 AAATTCCTTG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (25 bp):
AGAACTCTTTGTGAAGCCTTTATGG
Found at i:194663056 original size:40 final size:40
Alignment explanation
Indices: 194663001--194663200 Score: 248
Period size: 40 Copynumber: 5.1 Consensus size: 40
194662991 TGAATGATAC
* * * *
194663001 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
194663041 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
194663081 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
194663121 CCGGGCTAAGACCC-AAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
194663159 CC-CGTTAAGA-CCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
194663197 CCGG
1 CCGG
194663201 CTAAATTCCG
Statistics
Matches: 140, Mismatches: 16, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
36 2 0.01
37 25 0.18
38 4 0.03
39 23 0.16
40 84 0.60
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:194671153 original size:40 final size:40
Alignment explanation
Indices: 194671098--194671303 Score: 279
Period size: 40 Copynumber: 5.1 Consensus size: 40
194671088 TGAATGATAC
* * * *
194671098 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
194671138 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-T-TATAT
194671180 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
194671220 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
194671260 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
194671300 CCGG
1 CCGG
194671304 CTAAATTCCG
Statistics
Matches: 149, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
40 106 0.71
41 4 0.03
42 39 0.26
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:194671235 original size:82 final size:80
Alignment explanation
Indices: 194671094--194671307 Score: 306
Period size: 82 Copynumber: 2.7 Consensus size: 80
194671084 CAATTGAATG
* * * *
194671094 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
194671158 ATTTGTGCGAGTTGCTAT
65 ATTTGTGCGAGTTGC--T
* *
194671176 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
194671241 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
194671256 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
194671308 ATTCCGAAGA
Statistics
Matches: 120, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
79 6 0.05
80 42 0.35
82 70 0.58
83 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:194677326 original size:40 final size:41
Alignment explanation
Indices: 194677281--194677447 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
194677271 CGGAATATAA
*
194677281 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
194677321 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
194677361 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
194677401 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
194677440 CCGGATAT
1 CCGGATAT
194677448 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:194678291 original size:17 final size:19
Alignment explanation
Indices: 194678268--194678313 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
194678258 AAGAAGCATG
194678268 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
194678286 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
194678304 AATCATGCTC
1 AATCATGCTC
194678314 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:194685331 original size:40 final size:40
Alignment explanation
Indices: 194685286--194685452 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
194685276 CGGAATATAA
194685286 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
194685326 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
194685366 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
194685406 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
194685445 CCGGATAT
1 CCGGATAT
194685453 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:194686297 original size:17 final size:19
Alignment explanation
Indices: 194686274--194686319 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
194686264 AAGAAGCATG
194686274 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
194686292 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
194686310 AATCATGCTC
1 AATCATGCTC
194686320 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:194692744 original size:40 final size:39
Alignment explanation
Indices: 194692633--194692784 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
194692623 ATAAGCATGT
* ** *
194692633 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
194692673 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
194692713 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
194692753 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
194692785 CATTCAATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 93 0.98
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:194692767 original size:80 final size:80
Alignment explanation
Indices: 194692633--194692784 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
194692623 ATAAGCATGT
* *
194692633 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
194692698 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
194692713 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
194692776 CCCGGATAT
64 CCCGGATAT
194692785 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:194719759 original size:48 final size:47
Alignment explanation
Indices: 194719687--194719969 Score: 211
Period size: 48 Copynumber: 6.0 Consensus size: 47
194719677 GACATTTGGG
* * * *
194719687 TGATATGTGCGCTAGTGTAGGACCATGTCTGGGACATGGCATCGGCCA
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGG-CA
* *
194719735 TGATATGAGAGCCT-GTGTAAGACCATGTTTGGAACATGGCATCGGTA
1 TGATATGAGAG-CTAGTGTAAGACCATGTCTGGAACATGGCATCGGCA
* * * *
194719782 AGGTAATGAGAGGC-AGTGTAAGACCATGTCAGGAACATGGCATCTGCA
1 TGAT-ATGAGA-GCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCA
* * *
194719830 TTGATATGTGCA-CTAGTGTAAGACCATGTCT-GAGACAT-GCATTGGCCT
1 -TGATATGAG-AGCTAGTGTAAGACCATGTCTGGA-ACATGGCATCGG-CA
* * * * * * *
194719878 TAAGACGAGAGCTAGTGTAAG-TCATGTCTGGGATATGGCATCAGTC-
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATC-GGCA
* * * *
194719924 TCGACAAGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGG
1 T-GATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGG
194719970 TAATTCACCC
Statistics
Matches: 183, Mismatches: 37, Indels: 31
0.73 0.15 0.12
Matches are distributed among these distances:
46 12 0.07
47 49 0.27
48 116 0.63
49 6 0.03
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (47 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCA
Found at i:194733441 original size:40 final size:40
Alignment explanation
Indices: 194733354--194733503 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 40
194733344 ATTGAATTGA
* * * **
194733354 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
194733394 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
194733435 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
194733474 TATCCGGGCTAAGA-CCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
194733504 AAATCGTGAT
Statistics
Matches: 89, Mismatches: 13, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
38 1 0.01
39 17 0.19
40 71 0.80
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:194733517 original size:39 final size:40
Alignment explanation
Indices: 194733435--194733535 Score: 114
Period size: 39 Copynumber: 2.5 Consensus size: 40
194733425 TAGTGGCTAC
* * **
194733435 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* *
194733475 ATCCGGGCTAAGA-CCGAAGGCATTTGTGCAAATCGTGAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* * *
194733514 ATCCGGGTTAAGTCCCGTAGGC
1 ATCCGGGCTAAGACCCGAAGGC
194733536 CTTGGTGCGG
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 31 0.61
40 20 0.39
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
Found at i:194741498 original size:123 final size:121
Alignment explanation
Indices: 194741281--194741500 Score: 289
Period size: 123 Copynumber: 1.8 Consensus size: 121
194741271 AATTATGTGG
* * * *
194741281 AATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTGAATGATACCCGGGCTA
1 AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTGAATGATACCCGGGCTA
* * * * **
194741346 AGTCCCGAAGGCGATTATGTTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGAA
66 AGCCCCGAAGACGAATATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGAA
* *
194741402 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGGG
1 AATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTGAATGATACCCGGG
*
194741467 CTAAGCCCCGAAGAC-AATATGCTGGAAATTATAA
63 CTAAGCCCCGAAGACGAATATGCTAGAAATTATAA
194741501 CCGGGTTAAG
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
121 15 0.18
123 39 0.47
124 29 0.35
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (121 bp):
AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTGAATGATACCCGGGCTA
AGCCCCGAAGACGAATATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGAA
Found at i:194741548 original size:37 final size:40
Alignment explanation
Indices: 194741501--194741600 Score: 152
Period size: 40 Copynumber: 2.6 Consensus size: 40
194741491 GAAATTATAA
* *
194741501 CCGGGTTAAGACCCGAAGGCATT-GTGCTAGTC-TAC-AT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATACTAT
*
194741538 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATACTAT
194741578 CCGGGCTAAGACCCGAAGGCATT
1 CCGGGCTAAGACCCGAAGGCATT
194741601 TGGCAAATCG
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
37 22 0.39
38 8 0.14
39 2 0.04
40 25 0.44
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATACTAT
Found at i:194743380 original size:30 final size:31
Alignment explanation
Indices: 194743344--194743406 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
194743334 CCTTTTCATA
194743344 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
194743374 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
194743405 TT
1 TT
194743407 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:194743640 original size:23 final size:23
Alignment explanation
Indices: 194743616--194743733 Score: 211
Period size: 23 Copynumber: 5.1 Consensus size: 23
194743606 CCTAGCCTCT
194743616 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
194743638 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
194743661 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
194743684 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
194743708 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
194743731 TTT
1 TTT
194743734 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
22 16 0.17
23 54 0.59
24 22 0.24
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:194743704 original size:47 final size:47
Alignment explanation
Indices: 194743616--194743735 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
194743606 CCTAGCCTCT
*
194743616 TTTAATAACTGGGGCA-AAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
194743661 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
194743708 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
194743736 CACTTCCTCC
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
45 16 0.22
46 6 0.08
47 50 0.69
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:194743807 original size:20 final size:20
Alignment explanation
Indices: 194743782--194743848 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
194743772 ATTTATGAAC
194743782 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
194743802 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
194743822 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
194743842 ACCATGT
1 ATCATGT
194743849 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:194743813 original size:11 final size:11
Alignment explanation
Indices: 194743782--194743837 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
194743772 ATTTATGAAC
194743782 ATCATGTGCAT
1 ATCATGTGCAT
*
194743793 ATCA--TACAT
1 ATCATGTGCAT
194743802 ATCATGTGCAT
1 ATCATGTGCAT
*
194743813 ATCA--TACAT
1 ATCATGTGCAT
*
194743822 GTCATGTGCAT
1 ATCATGTGCAT
194743833 ATCAT
1 ATCAT
194743838 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:194743910 original size:25 final size:25
Alignment explanation
Indices: 194743882--194743929 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
194743872 TCATATAAAC
* * *
194743882 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
194743907 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
194743930 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:194751681 original size:24 final size:24
Alignment explanation
Indices: 194751645--194751772 Score: 215
Period size: 24 Copynumber: 5.4 Consensus size: 24
194751635 CTGGAGGCCT
*
194751645 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
194751670 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
194751694 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
194751717 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
194751741 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
194751764 AGCCCTTTT
1 AGCCCTTTT
194751773 GCACTTCCTC
Statistics
Matches: 98, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
23 45 0.46
24 49 0.50
25 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:194751706 original size:23 final size:23
Alignment explanation
Indices: 194751652--194751771 Score: 204
Period size: 23 Copynumber: 5.1 Consensus size: 23
194751642 CCTAGCCTCT
*
194751652 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
194751675 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
194751699 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
194751722 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
194751746 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
194751769 TTT
1 TTT
194751772 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
23 48 0.52
24 44 0.48
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:194751773 original size:47 final size:47
Alignment explanation
Indices: 194751652--194751773 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
194751642 CCTAGCCTCT
* *
194751652 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
194751699 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
194751746 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
194751774 CACTTCCTCC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:194751846 original size:20 final size:20
Alignment explanation
Indices: 194751818--194751888 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
194751808 GCATTTATGA
*
194751818 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
194751838 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
194751858 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
194751878 ACATACCATGT
1 ACATATCATGT
194751889 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:194751853 original size:11 final size:11
Alignment explanation
Indices: 194751823--194751877 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
194751813 TATGAACATC
194751823 TCATGTGCATA
1 TCATGTGCATA
*
194751834 TCA--TACATA
1 TCATGTGCATA
194751843 TCATGTGCATA
1 TCATGTGCATA
* *
194751854 TCA--TACATG
1 TCATGTGCATA
194751863 TCATGTGCATA
1 TCATGTGCATA
194751874 TCAT
1 TCAT
194751878 ACATACCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:194762842 original size:49 final size:49
Alignment explanation
Indices: 194762784--194762972 Score: 346
Period size: 49 Copynumber: 3.9 Consensus size: 49
194762774 GTATGAGATG
194762784 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
194762833 TATATATGTGATAAGGCCTAATGGCCGATGTGTTGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
194762880 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
194762929 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
194762973 CATATGTGTG
Statistics
Matches: 135, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
47 46 0.34
49 89 0.66
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:194762946 original size:96 final size:96
Alignment explanation
Indices: 194762782--194762972 Score: 364
Period size: 96 Copynumber: 2.0 Consensus size: 96
194762772 ATGTATGAGA
194762782 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
* *
194762847 GGCCTAATGGCCGATGTGTTGAATGTGAAAG
66 GGCCTAATGGCCGATGTGATGAATATGAAAG
194762878 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
194762943 GGCCTAATGGCCGATGTGATGAATATGAAA
66 GGCCTAATGGCCGATGTGATGAATATGAAA
194762973 CATATGTGTG
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.31
Consensus pattern (96 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATATGAAAG
Found at i:194763113 original size:37 final size:37
Alignment explanation
Indices: 194763065--194763149 Score: 134
Period size: 37 Copynumber: 2.3 Consensus size: 37
194763055 GAAATATGTT
* *
194763065 CCGGGTGAGACCAGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCAGATGACTACGTGTGGAGATTATGC
* *
194763102 CTGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
1 CCGGGTAAGACCAGATGACTACGTGTGGAGATTATGC
194763139 CCGGGTAAGAC
1 CCGGGTAAGAC
194763150 TTCGTAATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCAGATGACTACGTGTGGAGATTATGC
Found at i:194765130 original size:40 final size:40
Alignment explanation
Indices: 194765058--194765211 Score: 229
Period size: 40 Copynumber: 3.9 Consensus size: 40
194765048 GAATGATACT
* * **
194765058 CGGGCTAAGTCCCGAAG-GCATTTATGCTAATGATATATC
1 CGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATATATC
194765097 CGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATATATC
1 CGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATATATC
*
194765137 CGGGCTAAATTCTGAAGAGCATTCGTGCTAATGATATATC
1 CGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATATATC
* * *
194765177 CGAGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 CGGGCTAAATTCCGAAGAGCATTCGTGCTAATGAT
194765212 GTAACACTCC
Statistics
Matches: 105, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 15 0.14
40 90 0.86
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (40 bp):
CGGGCTAAATTCCGAAGAGCATTCGTGCTAATGATATATC
Found at i:194766659 original size:40 final size:40
Alignment explanation
Indices: 194766576--194766783 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
194766566 CGGGATTTAA
* * * * * *
194766576 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
194766616 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
194766656 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
194766696 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
194766736 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
194766776 CCGGATAT
1 CCGGATAT
194766784 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:194766696 original size:80 final size:80
Alignment explanation
Indices: 194766602--194766783 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
194766592 GCTCGATTGT
* * *** * * * **
194766602 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
194766667 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
194766682 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
194766747 TACTAGCATAATTGC
66 AACTAGCACAAATGC
194766762 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
194766784 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:194774676 original size:40 final size:40
Alignment explanation
Indices: 194774593--194774798 Score: 175
Period size: 40 Copynumber: 5.2 Consensus size: 40
194774583 CGGGATTTAA
* * * * * *
194774593 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
194774633 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
194774673 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
194774713 CCGGATA-A-CAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
194774751 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
194774791 CCGGATAT
1 CCGGATAT
194774799 CATTCCAATG
Statistics
Matches: 136, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
38 34 0.25
39 3 0.02
40 99 0.73
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:194774746 original size:78 final size:78
Alignment explanation
Indices: 194774647--194774797 Score: 212
Period size: 78 Copynumber: 1.9 Consensus size: 78
194774637 TTATAGTGAT
* * ** * *
194774647 TCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAG
194774712 CCCGGATAACAAC
66 CCCGGATAACAAC
* * * *
194774725 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAATTGCCTTCGGGACTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAG
194774790 CCCGGATA
66 CCCGGATA
194774798 TCATTCCAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (78 bp):
TCGCACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAG
CCCGGATAACAAC
Found at i:194778179 original size:136 final size:136
Alignment explanation
Indices: 194777795--194778214 Score: 781
Period size: 136 Copynumber: 3.1 Consensus size: 136
194777785 TATTGGGCCT
** * *
194777795 AAGCCCATTCAGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
194777860 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
194777925 ATATGC
131 ATATGC
194777931 AAGCCCATTT-GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
194777995 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
194778060 ATATGC
131 ATATGC
194778066 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
194778131 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATC-ATAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
194778195 CATATGC
130 CATATGC
194778202 AAGCCCATTTGGG
1 AAGCCCATTTGGG
194778215 GAGACTACTC
Statistics
Matches: 279, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
135 135 0.48
136 144 0.52
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:194780031 original size:25 final size:26
Alignment explanation
Indices: 194779997--194780104 Score: 175
Period size: 25 Copynumber: 4.2 Consensus size: 26
194779987 CATGAAATTC
194779997 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
194780022 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
194780048 TTATCATGGAATATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
*
194780073 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
194780099 TTATCA
1 TTATCA
194780105 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
25 46 0.59
26 32 0.41
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:194780073 original size:51 final size:51
Alignment explanation
Indices: 194779997--194780104 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 51
194779987 CATGAAATTC
194779997 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
* * *
194780048 TTATCATGGAATATTTACCTAACCATTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
194780099 TTATCA
1 TTATCA
194780105 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (51 bp):
TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
Found at i:194783959 original size:64 final size:64
Alignment explanation
Indices: 194783886--194784102 Score: 154
Period size: 64 Copynumber: 3.3 Consensus size: 64
194783876 CTAGGCTAGA
* *
194783886 GCCCTTTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
***** * ** *
194783950 GCCCATTTCAAAATAC-ATGCAACATCAATAACATATGCAAGCCC--ATTTGGGTAACAGTGGTA
1 GCCCATTTCAAAATACAAT--AA-A-CTGGGCCTTA-GC---CCCTTATTCAGATAACA---GTA
* *
194784012 CTGGGCCAGA-
55 -TGGCCCATAG
* * *
194784022 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
194784086 GCCCATTTCAAAATACA
1 GCCCATTTCAAAATACA
194784103 TGCAACATCA
Statistics
Matches: 107, Mismatches: 30, Indels: 32
0.63 0.18 0.19
Matches are distributed among these distances:
63 9 0.08
64 31 0.29
65 5 0.05
66 1 0.01
67 13 0.12
68 4 0.04
69 13 0.12
70 1 0.01
71 5 0.05
72 16 0.15
73 9 0.08
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:194784096 original size:136 final size:136
Alignment explanation
Indices: 194783852--194784273 Score: 754
Period size: 136 Copynumber: 3.1 Consensus size: 136
194783842 TATTGGGCCT
** * * * *
194783852 AAGCCCATTCAGGTAATAGTGGTACTAGGCTAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
194783917 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
194783982 ATATGC
131 ATATGC
194783988 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
194784053 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
194784118 ATATGC
131 ATATGC
194784124 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
** *
194784189 AAACCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
194784254 CATATGC
130 CATATGC
194784261 AAGCCCATTTGGG
1 AAGCCCATTTGGG
194784274 GAGACTACTC
Statistics
Matches: 276, Mismatches: 9, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
136 254 0.92
137 22 0.08
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:194786087 original size:26 final size:26
Alignment explanation
Indices: 194786051--194786160 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
194786041 CATGAAATTC
*
194786051 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAACCCA
194786077 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
194786103 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
194786129 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
194786155 TTATCA
1 TTATCA
194786161 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:194789116 original size:26 final size:26
Alignment explanation
Indices: 194789079--194789188 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
194789069 TGATACAAAT
*
194789079 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
194789105 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
194789131 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
194789157 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
194789183 TGATAA
1 TGATAA
194789189 GAATATCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:194794871 original size:17 final size:19
Alignment explanation
Indices: 194794835--194794872 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
194794825 ATATTAAGAA
194794835 TATTGTTTAAAATTTAAAAT
1 TATTGTTTAAAA-TTAAAAT
194794855 TATTG-TTAAAA-TAAAAT
1 TATTGTTTAAAATTAAAAT
194794872 T
1 T
194794873 GTAATATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
19 6 0.33
20 5 0.28
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (19 bp):
TATTGTTTAAAATTAAAAT
Found at i:194795642 original size:23 final size:23
Alignment explanation
Indices: 194795616--194795659 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
194795606 ATTTATTAAA
194795616 TTAT-TTAAATAAAAGTATTCAAG
1 TTATCTTAAATAAAA-TATTCAAG
**
194795639 TTATCTTATTTAAAATATTCA
1 TTATCTTAAATAAAATATTCA
194795660 TATTTGTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 10 0.56
24 8 0.44
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (23 bp):
TTATCTTAAATAAAATATTCAAG
Found at i:194797108 original size:1 final size:1
Alignment explanation
Indices: 194797072--194797100 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
194797062 AAGCTGCTCC
194797072 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
194797101 CACTTTTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:194800419 original size:68 final size:64
Alignment explanation
Indices: 194800302--194800468 Score: 160
Period size: 68 Copynumber: 2.5 Consensus size: 64
194800292 ATACAGGTAG
* * * * *
194800302 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACAAGACAT
1 TATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGTGTACAAGAGAGCTAC--GACA-
194800367 TA
63 TA
* * * **
194800369 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGT-GTACAAGAGAGCTACGACAT
194800433 A
64 A
194800434 TATGTAGCTAGGTCGCAT-G-TGCAGTACTAAGTGCA
1 TATGTAGCTAGGTCGCATGGATG-A-TACTAAGTGCA
194800469 GGCTACTATG
Statistics
Matches: 84, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
62 2 0.02
63 2 0.02
64 26 0.31
65 3 0.04
66 2 0.02
67 1 0.01
68 47 0.56
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGTGTACAAGAGAGCTACGACATA
Found at i:194800574 original size:49 final size:50
Alignment explanation
Indices: 194800444--194800589 Score: 186
Period size: 49 Copynumber: 2.9 Consensus size: 50
194800434 TATGTAGCTA
* *
194800444 GGTCGCATGTGCAGTACTAAGTGCAGGCTACTATGCGTACCCAATAACTTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAATAAC-TT
* * * * **
194800495 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAATAACTT
* *
194800544 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAAATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAATA
194800590 GTTTGGCTAC
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
49 41 0.51
51 39 0.49
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (50 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAATAACTT
Found at i:194803753 original size:93 final size:93
Alignment explanation
Indices: 194803641--194803812 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
194803631 GCCCATAAGT
* *
194803641 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
194803706 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
194803734 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
194803799 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
194803813 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:194803808 original size:46 final size:46
Alignment explanation
Indices: 194803633--194803808 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
194803623 TGTAACCCGC
* * *
194803633 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
194803679 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
194803729 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
194803772 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
194803809 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:194806227 original size:30 final size:30
Alignment explanation
Indices: 194806183--194806271 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
194806173 CAAAGATAAC
*
194806183 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
194806212 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
194806242 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
194806272 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:194806231 original size:15 final size:14
Alignment explanation
Indices: 194806183--194806265 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
194806173 CAAAGATAAC
*
194806183 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
194806197 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
194806212 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
194806227 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
194806242 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
194806257 AAGAAACCC
1 AAGAAACCC
194806266 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:194806271 original size:15 final size:15
Alignment explanation
Indices: 194806194--194806271 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
194806184 AGAAAACCGA
194806194 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
194806209 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
194806223 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
194806238 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
194806254 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
194806269 ATA
1 ATA
194806272 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:194809324 original size:93 final size:93
Alignment explanation
Indices: 194809212--194809382 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
194809202 GCCCATAAGT
* *
194809212 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
194809277 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
194809305 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
194809370 CGAGTTCGGATGC
66 CGAGTTCGGATGC
194809383 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:194809379 original size:46 final size:46
Alignment explanation
Indices: 194809204--194809379 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
194809194 TGTAACCCGC
* * *
194809204 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
194809250 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
194809300 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
194809343 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
194809380 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:194817028 original size:27 final size:28
Alignment explanation
Indices: 194816998--194817067 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
194816988 ATAATAAGTC
*
194816998 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
194817025 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
194817053 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
194817068 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:194825088 original size:27 final size:28
Alignment explanation
Indices: 194825058--194825127 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
194825048 ATAATAAGTC
*
194825058 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
194825085 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
194825113 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
194825128 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:194827446 original size:40 final size:40
Alignment explanation
Indices: 194827280--194827447 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
194827270 CATTTGAATG
* * *
194827280 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
194827320 ATGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
194827360 ATATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
194827400 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
194827440 GTATCCGG
1 ATATCCGG
194827448 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.93
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:194835343 original size:40 final size:40
Alignment explanation
Indices: 194835259--194835368 Score: 130
Period size: 40 Copynumber: 2.8 Consensus size: 40
194835249 TTTGAATGAT
* * *** *
194835259 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAT
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGCAAGTTACCAA
*
194835299 ATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAA
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGCAAGTTACCAA
* * *
194835339 ATCCGGGTTAAGACCTGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGC
194835369 TTGTGGTTGT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATCGTGCAAGTTACCAA
Found at i:194843369 original size:40 final size:40
Alignment explanation
Indices: 194843203--194843370 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
194843193 CATTTGAATG
* * *
194843203 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
194843243 ATGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
194843283 ATATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
194843323 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
194843363 GTATCCGG
1 ATATCCGG
194843371 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.93
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:194851149 original size:40 final size:40
Alignment explanation
Indices: 194851090--194851297 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
194851080 CAATTGAATG
* * * *
194851090 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
194851130 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
194851170 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
194851210 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
194851250 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
194851290 ATATCCGG
1 ATATCCGG
194851298 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:194851228 original size:80 final size:80
Alignment explanation
Indices: 194851091--194851297 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
194851081 AATTGAATGA
* * ** * * *
194851091 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
194851156 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
194851169 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
194851234 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
194851251 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
194851298 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:194853564 original size:28 final size:27
Alignment explanation
Indices: 194853532--194853620 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 27
194853522 CACATACCTA
194853532 TATATGGCCCACTAGGCCCAATCATATT
1 TATATGGCCCA-TAGGCCCAATCATATT
* ** *
194853560 TATATGGCCCGTTAGGCCCAAAAATGTT
1 TATATGGCCC-ATAGGCCCAATCATATT
*
194853588 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCAT-AGGCCCAA-TCATATT
194853617 TATA
1 TATA
194853621 GTCATGCTCA
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 1 0.02
28 41 0.84
29 7 0.14
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (27 bp):
TATATGGCCCATAGGCCCAATCATATT
Found at i:194854009 original size:14 final size:14
Alignment explanation
Indices: 194853990--194854016 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
194853980 ATTCAACATT
194853990 ATATTCCATTAATC
1 ATATTCCATTAATC
194854004 ATATTCCATTAAT
1 ATATTCCATTAAT
194854017 TCAAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (14 bp):
ATATTCCATTAATC
Found at i:194860180 original size:12 final size:12
Alignment explanation
Indices: 194860163--194860188 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
194860153 AACATCACTA
194860163 AAATAAATGTCC
1 AAATAAATGTCC
194860175 AAATAAATGTCC
1 AAATAAATGTCC
194860187 AA
1 AA
194860189 TGTCCATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (12 bp):
AAATAAATGTCC
Found at i:194872909 original size:40 final size:40
Alignment explanation
Indices: 194872850--194872991 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
194872840 AAATTGAATG
* * *
194872850 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
194872890 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
194872930 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
194872970 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
194872992 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:194872992 original size:40 final size:39
Alignment explanation
Indices: 194872889--194873017 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
194872879 TGCTGGAAAT
* * *
194872889 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
194872929 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
194872969 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
194873009 TATATCCGG
1 TATATCCGG
194873018 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:194881895 original size:27 final size:29
Alignment explanation
Indices: 194881865--194881983 Score: 125
Period size: 29 Copynumber: 4.1 Consensus size: 29
194881855 ATGCAAGAGC
*
194881865 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
194881892 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
194881921 ATATAATTTTCAGCTCGCACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* **
194881951 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
194881980 ATAT
1 ATAT
194881984 TTTTCGCACA
Statistics
Matches: 85, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
27 5 0.06
28 3 0.04
29 48 0.56
30 29 0.34
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:194881932 original size:30 final size:29
Alignment explanation
Indices: 194881877--194881988 Score: 208
Period size: 29 Copynumber: 3.9 Consensus size: 29
194881867 ATAGTGAATC
194881877 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
194881906 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
194881936 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
194881965 CGCACACTTAGTGCTATAT-TTTTC
1 CGCACACTTAGTGCTATATATTTTC
194881989 GCACACTTAG
Statistics
Matches: 82, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
28 5 0.06
29 48 0.59
30 29 0.35
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:194881994 original size:23 final size:24
Alignment explanation
Indices: 194881877--194882002 Score: 101
Period size: 29 Copynumber: 4.6 Consensus size: 24
194881867 ATAGTGAATC
194881877 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGC--TATATTTT---CT
194881906 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGC--TAT-ATTTT---CT
194881936 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGC--TATATTTT---CT
194881965 CGCACACTTAGTGCTATATTTT-T
1 CGCACACTTAGTGCTATATTTTCT
194881988 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
194882003 GTACAATTTT
Statistics
Matches: 96, Mismatches: 0, Indels: 8
0.92 0.00 0.08
Matches are distributed among these distances:
23 16 0.17
27 8 0.08
29 43 0.45
30 29 0.30
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (24 bp):
CGCACACTTAGTGCTATATTTTCT
Found at i:194888068 original size:40 final size:40
Alignment explanation
Indices: 194888002--194888168 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
194887992 AAATTGAATG
* * *
194888002 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
194888041 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
194888081 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
194888121 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
194888161 ATATCCGG
1 ATATCCGG
194888169 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:194896030 original size:40 final size:40
Alignment explanation
Indices: 194895964--194896130 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
194895954 AAATTGAATG
* * *
194895964 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
194896003 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
194896043 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
194896083 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
194896123 ATATCCGG
1 ATATCCGG
194896131 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:194900955 original size:29 final size:29
Alignment explanation
Indices: 194900923--194901054 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
194900913 ATAGTGAATC
194900923 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
194900952 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
194900982 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
194901011 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
194901040 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
194901055 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:194901064 original size:59 final size:59
Alignment explanation
Indices: 194900923--194901054 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
194900913 ATAGTGAATC
194900923 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
194900982 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
194901040 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
194901055 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:194904054 original size:40 final size:40
Alignment explanation
Indices: 194903988--194904154 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
194903978 AAATTGAATG
* * * *
194903988 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
194904027 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
194904067 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
194904107 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
194904147 ATATCCGG
1 ATATCCGG
194904155 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 15 0.15
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:194912001 original size:40 final size:40
Alignment explanation
Indices: 194911935--194912101 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
194911925 AAATTGAATG
* * *
194911935 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
194911974 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
194912014 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
194912054 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
194912094 ATATCCGG
1 ATATCCGG
194912102 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:194915818 original size:40 final size:40
Alignment explanation
Indices: 194915733--194915883 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
194915723 AATTGAATGA
* * *
194915733 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
194915773 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
194915814 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
194915853 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
194915884 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:194915897 original size:40 final size:40
Alignment explanation
Indices: 194915770--194915899 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
194915760 ATGCTGGAAA
* * * *
194915770 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
194915810 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
194915850 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
194915890 TTATATCCGG
1 TTATATCCGG
194915900 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:194923775 original size:40 final size:40
Alignment explanation
Indices: 194923690--194923840 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
194923680 AATTGAATGA
* * *
194923690 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
194923730 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
194923771 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
194923810 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
194923841 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:194923854 original size:40 final size:40
Alignment explanation
Indices: 194923727--194923856 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
194923717 ATGCTGGAAA
* * * *
194923727 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
194923767 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
194923807 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
194923847 TTATATCCGG
1 TTATATCCGG
194923857 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:194925891 original size:80 final size:80
Alignment explanation
Indices: 194925807--194925955 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
194925797 TATGGTAACC
* * * *
194925807 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
194925871 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
194925887 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
194925952 CCGG
66 CCGG
194925956 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:194925897 original size:40 final size:38
Alignment explanation
Indices: 194925848--194925955 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
194925838 ATCACGATTT
*
194925848 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
194925888 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
194925928 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
194925956 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:194931450 original size:13 final size:12
Alignment explanation
Indices: 194931434--194931502 Score: 68
Period size: 13 Copynumber: 5.4 Consensus size: 12
194931424 TTGACATTTT
194931434 CATTTCAAGTATC
1 CATTTCAA-TATC
*
194931447 CATTCCAATATC
1 CATTTCAATATC
194931459 CATTTCATATATC
1 CATTTCA-ATATC
194931472 CATTTCATATAAT-
1 CATTTCA-AT-ATC
194931485 CATTTCATATATC
1 CATTTCA-ATATC
*
194931498 TATTT
1 CATTT
194931503 TCACCCGATA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
12 12 0.24
13 36 0.72
14 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (12 bp):
CATTTCAATATC
Found at i:194931492 original size:26 final size:24
Alignment explanation
Indices: 194931433--194931502 Score: 79
Period size: 26 Copynumber: 2.8 Consensus size: 24
194931423 TTTGACATTT
*
194931433 TCATTTCA-AGTATCCATTCCAATA
1 TCATTTCATA-TATCCATTTCAATA
194931457 TCCATTTCATATATCCATTTCATATAA
1 T-CATTTCATATATCCATTTCA-AT-A
*
194931484 TCATTTCATATATCTATTT
1 TCATTTCATATATCCATTT
194931503 TCACCCGATA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
24 1 0.03
25 17 0.43
26 20 0.50
27 2 0.05
ACGTcount: A:0.31, C:0.21, G:0.01, T:0.46
Consensus pattern (24 bp):
TCATTTCATATATCCATTTCAATA
Found at i:194931610 original size:25 final size:25
Alignment explanation
Indices: 194931547--194931614 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
194931537 ACGTAGGAAC
* *
194931547 AATGCTCACACAAGCTGTGACGGTA
1 AATGCTCACACGAGCTGTAACGGTA
* ** * *
194931572 AATGCTAAGGCGAGTTGTAATGGTA
1 AATGCTCACACGAGCTGTAACGGTA
194931597 AATGCTCACACGAGCTGT
1 AATGCTCACACGAGCTGT
194931615 GGGTCGGGAT
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (25 bp):
AATGCTCACACGAGCTGTAACGGTA
Found at i:194932008 original size:27 final size:27
Alignment explanation
Indices: 194931978--194932030 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
194931968 AAGAACAGAA
194931978 AGAAATTATTTCAATCAATATACAAAG
1 AGAAATTATTTCAATCAATATACAAAG
194932005 AGAAATTATTTCAATCAATATACAAA
1 AGAAATTATTTCAATCAATATACAAA
194932031 TTTACCTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.30
Consensus pattern (27 bp):
AGAAATTATTTCAATCAATATACAAAG
Found at i:194937184 original size:45 final size:45
Alignment explanation
Indices: 194937128--194937218 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
194937118 GAACTATGTG
*
194937128 ATCTGAACTCATTAAGTTGTGGTCTCAGTTCATGATATATGTGAC
1 ATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATATATGTGAC
* * *
194937173 ATCTGAACTCATTGAGTTGTGGTTTAAGTTCATGATGTATGTGAC
1 ATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATATATGTGAC
194937218 A
1 A
194937219 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATATATGTGAC
Found at i:194942528 original size:40 final size:40
Alignment explanation
Indices: 194942472--194942637 Score: 166
Period size: 40 Copynumber: 4.2 Consensus size: 40
194942462 CAATTGAATG
*
194942472 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGACTT
194942513 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG--TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AG-TGACTT
* * * *
194942552 AAATCCGGGCTAATACCCGAAGGCATTTGTGCA-AGACGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGAC-TT
*
194942592 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTG-GTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCA-GTGACTT
194942632 ATATCC
1 ATATCC
194942638 AGTTGTATTC
Statistics
Matches: 104, Mismatches: 11, Indels: 21
0.76 0.08 0.15
Matches are distributed among these distances:
37 1 0.01
39 8 0.08
40 90 0.87
41 4 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGACTT
Found at i:194942607 original size:80 final size:80
Alignment explanation
Indices: 194942474--194942624 Score: 234
Period size: 80 Copynumber: 1.9 Consensus size: 80
194942464 ATTGAATGAT
* *
194942474 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
194942539 CGTGCAAGTTGTTAA
66 CGTGCAAGTTGTTAA
* *
194942554 ATCCGGGCTAATACCCGAAGGCATTTGTGC-A-AGACGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGAC-TT-TATCCGGGCTAAGACCCGAAGGCA
194942617 TTCGTGCA
64 TTCGTGCA
194942625 TGTGGTTATA
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
78 3 0.05
79 3 0.05
80 59 0.91
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGTTAA
Found at i:194950837 original size:40 final size:40
Alignment explanation
Indices: 194950782--194950991 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
194950772 AACATTGGAA
194950782 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
194950822 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
194950862 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
194950902 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
194950941 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
194950982 CTATATCCGG
1 ATATATCCGG
194950992 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:194958867 original size:40 final size:40
Alignment explanation
Indices: 194958812--194959021 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
194958802 AACATTGGAA
194958812 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
194958852 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
194958892 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
194958932 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
194958971 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
194959012 CTATATCCGG
1 ATATATCCGG
194959022 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:194963253 original size:40 final size:40
Alignment explanation
Indices: 194963195--194963427 Score: 185
Period size: 40 Copynumber: 5.8 Consensus size: 40
194963185 GGATATAGCG
* * * *
194963195 ACTCGCTCGATTGTCTTCGGGACATT-GCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGGTT-TAGTA
*
194963235 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAGTA
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGG-TTTAGTA
* *
194963275 ACTCGCACGAA-TGCCTTCGGGAC-TTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATTAGCCCGG-TTTAGTA
* * * *
194963315 ACTCGCACAAATGCCTTCGGGAC-TTAACCCGATTTTGGTA
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCG-GTTTAGTA
* * *
194963355 ACTAGCACAAATGCCTTCGGGA-ATT-GACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATTAG-CCCGG-TTTAGTA
* **
194963395 ACTTAGCACAAAAGCCTTCGGGAC-TTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATTAGCCCGG
194963428 ACACCATTCG
Statistics
Matches: 165, Mismatches: 16, Indels: 23
0.81 0.08 0.11
Matches are distributed among these distances:
39 5 0.03
40 129 0.78
41 30 0.18
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
ACTCGCACAATTGCCTTCGGGACATTAGCCCGGTTTAGTA
Found at i:194963307 original size:80 final size:79
Alignment explanation
Indices: 194963195--194963428 Score: 238
Period size: 80 Copynumber: 2.9 Consensus size: 79
194963185 GGATATAGCG
* * * * * * *
194963195 ACTCGCTCGATTGTCTTCGGGACATTGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGAC-TTACCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGACTT
194963260 AGCCCGGA-TTTAGTA
64 AGCCCGGATTTTAGTA
* *
194963275 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGGACTT-ACCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTT
* *
194963340 AACCC-GATTTTGGTA
64 AGCCCGGATTTTAGTA
* * * * * *
194963355 ACTAGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACT
1 ACTCGCACGAATGCCTTCGGGACTT-ACCCGG-TTTAGT-AATTCGCACAAATGCCTTCGGGACT
194963420 TAGCCCGGA
63 TAGCCCGGA
194963429 CACCATTCGA
Statistics
Matches: 127, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
79 4 0.03
80 93 0.73
81 28 0.22
82 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (79 bp):
ACTCGCACGAATGCCTTCGGGACTTACCCGGTTTAGTAATTCGCACAAATGCCTTCGGGACTTAG
CCCGGATTTTAGTA
Found at i:194965400 original size:40 final size:40
Alignment explanation
Indices: 194965351--194965518 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
194965341 TCTTCGGAAT
* * *
194965351 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
194965390 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
*
194965430 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
194965470 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
194965510 TTAGCCCGG
1 TTAGCCCGG
194965519 GTATCATTCA
Statistics
Matches: 109, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 3 0.03
40 105 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:194973295 original size:40 final size:40
Alignment explanation
Indices: 194973246--194973413 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
194973236 TCTTCGGAAT
* * *
194973246 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
194973285 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
194973325 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
194973365 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
194973405 TTAGCCCGG
1 TTAGCCCGG
194973414 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:194981161 original size:40 final size:40
Alignment explanation
Indices: 194981113--194981279 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
194981103 TTCTTCGAAT
* * *
194981113 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *** *
194981152 TTAACCCGGAT-TGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
194981191 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
194981231 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
194981271 TTAGCCCGG
1 TTAGCCCGG
194981280 GTATCATTCA
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 34 0.32
40 72 0.67
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:194989420 original size:39 final size:40
Alignment explanation
Indices: 194989244--194989424 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
194989234 CCGCACCAAG
* * * * * * * *
194989244 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
194989284 GCCTTCGGGTCTTAGCCCGG--ATAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
194989322 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
194989362 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
194989401 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
194989425 CATTCAATTT
Statistics
Matches: 120, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
38 32 0.27
39 33 0.28
40 55 0.46
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:194997761 original size:40 final size:40
Alignment explanation
Indices: 194997717--194997826 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
194997707 TTCACAATTT
* *
194997717 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
194997757 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
194997797 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
194997827 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:195004799 original size:49 final size:50
Alignment explanation
Indices: 195004709--195004954 Score: 264
Period size: 49 Copynumber: 4.9 Consensus size: 50
195004699 ATCTATTGTG
* * *
195004709 AGGTCACGTGTGTAGTACTAAGTGCAGGCGACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
195004759 -GGTCGCATGTGTATTACTAAGTGCAAGCTACTATGCGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-TT
* * * * * **
195004809 CGATCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** *
195004859 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGGTAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
195004909 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
195004955 GCTTTGGCTA
Statistics
Matches: 159, Mismatches: 33, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
49 76 0.48
50 50 0.31
51 33 0.21
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:195004953 original size:99 final size:100
Alignment explanation
Indices: 195004712--195004954 Score: 267
Period size: 100 Copynumber: 2.4 Consensus size: 100
195004702 TATTGTGAGG
* * * * *
195004712 TCACGTGTGTAGTACTAAGTGCAGGCGACTACGTGTACCGGATAATTGGTCGCATGTGTATTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
*
195004777 AAGTGCAAGCTACTATGCGTACCCAATAACTTCGA
66 AAGTGCAAGCTACTACGCGTACCCAATAACTTCGA
* * * ** **
195004812 TCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* * * *
195004877 TAAGTGCAGGCTACTACGTGTA-CCAGGTAA-TT-GG
65 TAAGTGCAAGCTACTACGCGTACCCA-ATAACTTCGA
* * *
195004911 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
195004955 GCTTTGGCTA
Statistics
Matches: 119, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
99 38 0.32
100 46 0.39
101 35 0.29
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAAGCTACTACGCGTACCCAATAACTTCGA
Found at i:195006915 original size:30 final size:30
Alignment explanation
Indices: 195006881--195006941 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
195006871 TTCTCAAGCC
195006881 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
195006911 TAGGGGCAAAATTGTAATTGTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
195006941 T
1 T
195006942 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:195007555 original size:64 final size:64
Alignment explanation
Indices: 195007475--195007658 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
195007465 AGACATTATG
* * *
195007475 ATGTAGCTAGGTCGCATGGGTGATACTATGTTTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTTTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * ***
195007539 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TTTACACCATGTAGACAAGAGAGCTACGAGAT
195007604 AA
63 AA
* *
195007606 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTT-CACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGT-TTACACCATGTAG-ACAAGAGAGC
195007659 CAAAATTATG
Statistics
Matches: 97, Mismatches: 17, Indels: 13
0.76 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 25 0.26
66 21 0.22
67 30 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTTTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:195010522 original size:93 final size:93
Alignment explanation
Indices: 195010411--195010581 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
195010401 GCCCATAAGT
* * * *
195010411 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAATTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
195010476 CGAGCTCGGATGCATAGTTACATCTCTC
66 CGAGCTCGGATGCATAGTTACATCTCTC
* *
195010504 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
195010569 CGAGTTCGGATGC
66 CGAGCTCGGATGC
195010582 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCATAGTTACATCTCTC
Found at i:195010578 original size:46 final size:46
Alignment explanation
Indices: 195010403--195010578 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
195010393 TGTAACCCGC
* * *
195010403 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
195010449 CCATAATTGAACTCAGACTCAACTCAACGAGCTCGGATGCA-TAG-TT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA--CATTCGCAT
* *** *
195010495 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
195010542 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
195010579 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 69 0.64
47 35 0.33
48 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:195016088 original size:47 final size:44
Alignment explanation
Indices: 195015925--195016093 Score: 153
Period size: 47 Copynumber: 3.7 Consensus size: 44
195015915 TGTAACCCGC
* *
195015925 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC--GCATTCGCAT
* * * *
195015971 CCATAAG-GAACTCAGACTCAACTCAACGAGCTCGGATGCGTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGCATTCGCA--T
* *** *
195016016 ACATCTCTCG-ACTCGGACTCAACTCAACGAGTATCGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAG-CTCG--CATTCGCAT
195016063 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
195016094 TTCGGATGCT
Statistics
Matches: 96, Mismatches: 19, Indels: 15
0.74 0.15 0.12
Matches are distributed among these distances:
43 5 0.05
45 28 0.29
46 28 0.29
47 30 0.31
49 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGCATTCGCAT
Done.