Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 622 of 770
Found at i:195030852 original size:66 final size:69
Alignment explanation
Indices: 195030722--195030852 Score: 160
Period size: 66 Copynumber: 1.9 Consensus size: 69
195030712 GGGATGTATC
* * *
195030722 CCATGTAGACAAGAGAGCTACGAGAGAGGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTAC---AGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
195030787 AAGGACA
63 AAGGACA
* * *
195030794 CCATGTAGACAAGAGAGCTAC-GA-GATAAAT-TGGCTAGGTCACATGGGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACAGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
195030853 TTCACCATGT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
66 23 0.43
67 7 0.13
68 2 0.04
72 21 0.40
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.21
Consensus pattern (69 bp):
CCATGTAGACAAGAGAGCTACAGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTGAAG
GACA
Found at i:195032804 original size:45 final size:46
Alignment explanation
Indices: 195032718--195032931 Score: 181
Period size: 45 Copynumber: 4.6 Consensus size: 46
195032708 ATATCTGTGT
* * * *
195032718 CGATGCCATGTCCTAGACATGGTCTTACACTGAC-ACCTCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTCGTAGGC
*
195032764 CGATTCATGTCCCAGACATGTCTTACA-TGGCTTACATCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGTAGGC
* * * * * *
195032809 CGAAGCATATCCCAGACATGTCTTACACTAGCACTCATCTC-AATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGTAGGC
* * *
195032855 TGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAAT-GT-GGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGTAGGC
195032903 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
195032932 AGCCCACACA
Statistics
Matches: 137, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
43 3 0.02
44 9 0.07
45 45 0.33
46 29 0.21
47 28 0.20
48 22 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGTAGGC
Found at i:195034656 original size:7 final size:7
Alignment explanation
Indices: 195034641--195034787 Score: 111
Period size: 7 Copynumber: 20.6 Consensus size: 7
195034631 TACATAGGTT
*
195034641 TTTAGGG
1 TTTAAGG
195034648 TTTAAGG
1 TTTAAGG
*
195034655 TTTAAGAT
1 TTTAAG-G
*
195034663 TTTAGGG
1 TTTAAGG
*
195034670 TTTTAGG
1 TTTAAGG
*
195034677 TTTTAGG
1 TTTAAGG
195034684 TTTAAGG
1 TTTAAGG
*
195034691 TTTAGGG
1 TTTAAGG
195034698 TTTTAAGG
1 -TTTAAGG
*
195034706 TTTATGG
1 TTTAAGG
195034713 TTTATA-G
1 TTTA-AGG
*
195034720 TTTAGGG
1 TTTAAGG
*
195034727 TTTATGG
1 TTTAAGG
195034734 TTTATA-G
1 TTTA-AGG
*
195034741 TTTAGGG
1 TTTAAGG
195034748 TTTAAGG
1 TTTAAGG
195034755 TTTTAAGG
1 -TTTAAGG
195034763 TTT-AGG
1 TTTAAGG
*
195034769 TTTTAGGG
1 -TTTAAGG
*
195034777 TTTTAGG
1 TTTAAGG
195034784 TTTA
1 TTTA
195034788 GGAGTTTTTC
Statistics
Matches: 111, Mismatches: 20, Indels: 18
0.74 0.13 0.12
Matches are distributed among these distances:
6 3 0.03
7 88 0.79
8 20 0.18
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.50
Consensus pattern (7 bp):
TTTAAGG
Found at i:195034684 original size:29 final size:27
Alignment explanation
Indices: 195034635--195034786 Score: 122
Period size: 29 Copynumber: 5.6 Consensus size: 27
195034625 ATGGCTTACA
* *
195034635 TAGGTTTTTAGGGTTTAAGGTTTAAGATTT
1 TAGGGTTTTA-GGTTTTAGGTTTAAG--TT
195034665 TAGGGTTTTAGGTTTTAGGTTTAAGGTT
1 TAGGGTTTTAGGTTTTAGGTTTAA-GTT
195034693 TAGGGTTTTAAGG-TTTATGGTTTATAGTT
1 TAGGGTTTT-AGGTTTTA-GGTTTA-AGTT
195034722 TAGGG-TTTA-----T-GGTTTATAGTT
1 TAGGGTTTTAGGTTTTAGGTTTA-AGTT
* *
195034743 TAGGGTTTAAGGTTTTAAGGTTTAGGTTT
1 TAGGGTTTTAGGTTTT-AGGTTTAAG-TT
195034772 TAGGGTTTTAGGTTT
1 TAGGGTTTTAGGTTT
195034787 AGGAGTTTTT
Statistics
Matches: 104, Mismatches: 5, Indels: 27
0.76 0.04 0.20
Matches are distributed among these distances:
21 16 0.15
22 3 0.03
23 1 0.01
27 2 0.02
28 19 0.18
29 52 0.50
30 11 0.11
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.51
Consensus pattern (27 bp):
TAGGGTTTTAGGTTTTAGGTTTAAGTT
Found at i:195038225 original size:22 final size:22
Alignment explanation
Indices: 195038191--195038242 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
195038181 AACCTGTAGT
* *
195038191 ACGGGCATGTCCCTTAGACCAC
1 ACGGGCGTATCCCTTAGACCAC
* *
195038213 ACGGGCGTATCCCTTGGACCTC
1 ACGGGCGTATCCCTTAGACCAC
195038235 ACGGGCGT
1 ACGGGCGT
195038243 GTGAGCCTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.17, C:0.35, G:0.29, T:0.19
Consensus pattern (22 bp):
ACGGGCGTATCCCTTAGACCAC
Found at i:195040548 original size:8 final size:8
Alignment explanation
Indices: 195040535--195040559 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
195040525 TAAAGTGTCA
195040535 AAAATGTG
1 AAAATGTG
195040543 AAAATGTG
1 AAAATGTG
195040551 AAAATGTG
1 AAAATGTG
195040559 A
1 A
195040560 TGGTTAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:195046703 original size:40 final size:40
Alignment explanation
Indices: 195046658--195046825 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
195046648 CGGAATATAA
195046658 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
195046698 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
195046738 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
195046778 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
195046818 CCGGATAT
1 CCGGATAT
195046826 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:195054742 original size:29 final size:29
Alignment explanation
Indices: 195054708--195054839 Score: 137
Period size: 29 Copynumber: 4.6 Consensus size: 29
195054698 TAATCGATCA
*
195054708 CGCACACTTAGTGCCAT-GTGATTT-AAGCT
1 CGCACACTTAGTGCCATACT--TTTCAAGCT
* * **
195054737 CGCACACATAGTGCCGTATA-ATTT-AAATT
1 CGCACACTTAGTGCC--ATACTTTTCAAGCT
195054766 CGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
195054795 TGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
195054824 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
195054840 ATCTTGTCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
27 3 0.03
28 3 0.03
29 81 0.91
31 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACTTTTCAAGCT
Found at i:195062694 original size:29 final size:28
Alignment explanation
Indices: 195062660--195062762 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
195062650 TAATCGATCA
*
195062660 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* * **
195062689 CGCACACATAGTGCCGTATAATTTAAATT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
195062718 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
195062747 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
195062763 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:195067131 original size:79 final size:81
Alignment explanation
Indices: 195067028--195067212 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
195067018 GCTACTCGTT
* *
195067028 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-ACC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCACACAAATGCCTTC-GGATCTTAGACC
* *
195067090 CGATTTAGTAAC-TCGCA
64 CGATATAGTAACTTAGCA
* * *
195067107 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAATGCCTTCGGATCTTAGACCCG
*
195067172 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
195067188 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
195067213 CATCATTCGA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
78 3 0.03
79 49 0.53
80 32 0.35
81 8 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAATGCCTTCGGATCTTAGACCCG
ATATAGTAACTTAGCA
Found at i:195067212 original size:40 final size:40
Alignment explanation
Indices: 195067028--195067212 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
195067018 GCTACTCGTT
* * *
195067028 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
195067068 CAAATGCCTTCGGGACTTAACCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
195067107 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* *
195067147 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
*
195067188 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
195067213 CATCATTCGA
Statistics
Matches: 128, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
39 40 0.31
40 78 0.61
41 10 0.08
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:195073098 original size:48 final size:48
Alignment explanation
Indices: 195073027--195073126 Score: 173
Period size: 48 Copynumber: 2.1 Consensus size: 48
195073017 GTAATAGCCT
*
195073027 TATATCTCGGAAGTCCCGGGTGACCCTAAGGAGTGCTTAGGATTTGGA
1 TATATCTCGGAAGTCCCGGGTGACCCTAAGGAGTGCTTAGGATTCGGA
* *
195073075 TATATCTCGGAAGTCCTGGGTGACCCTAAGGAGTGTTTAGGATTCGGA
1 TATATCTCGGAAGTCCCGGGTGACCCTAAGGAGTGCTTAGGATTCGGA
195073123 TATA
1 TATA
195073127 ATTACACCAC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (48 bp):
TATATCTCGGAAGTCCCGGGTGACCCTAAGGAGTGCTTAGGATTCGGA
Found at i:195073325 original size:42 final size:42
Alignment explanation
Indices: 195073273--195073362 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
195073263 TCGGCCTCGG
* *
195073273 TATGTGATTTCATGTAAGACCATATCCGGGATATGGCATTGA
1 TATGAGATTTCATGTAAGACCATATCCGGGACATGGCATTGA
* * *
195073315 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGA
1 TATGAGATTTCATGTAAGACCATATCCGGGACATGGCATTGA
*
195073357 TGTGAG
1 TATGAG
195073363 GTCCTGTGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (42 bp):
TATGAGATTTCATGTAAGACCATATCCGGGACATGGCATTGA
Found at i:195073372 original size:42 final size:42
Alignment explanation
Indices: 195073285--195073483 Score: 150
Period size: 42 Copynumber: 4.6 Consensus size: 42
195073275 TGTGATTTCA
* * * *
195073285 TGTAAGACCATATCCGGGATATGGCATTGATATGAGATTTCG
1 TGTAAGACCATGTCTGGGACATGGCATTGATATGAGATCTCG
* *
195073327 TGTAAGACCATGTCTGGGACATGGCATTGATGTGAGGTC-CTG
1 TGTAAGACCATGTCTGGGACATGGCATTGATATGAGATCTC-G
* * * *
195073369 TGTAAGACCATGTGTGGGACATCGCATTTGCACCGATGTGAGATTTCG
1 TGTAAGACCATGTCTGGGACATGGCA-TT-----GATATGAGATCTCG
* * ** * * * *
195073417 TATAAGACCATATCTGGGATTTGGCATCGATATGTA-AGCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGATATG-AGATCTCG
195073459 TGTAAGACCATGTCTGGGACATGGC
1 TGTAAGACCATGTCTGGGACATGGC
195073484 TTTGGAATAC
Statistics
Matches: 122, Mismatches: 26, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
41 1 0.01
42 86 0.70
43 3 0.02
47 1 0.01
48 30 0.25
49 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATGGCATTGATATGAGATCTCG
Found at i:195073393 original size:132 final size:132
Alignment explanation
Indices: 195073236--195073483 Score: 302
Period size: 132 Copynumber: 1.9 Consensus size: 132
195073226 ATGTGTGTTA
* * * * *
195073236 GTGTAAGACCATATCTGGGATATCGCCTCGGC-CTCGGTATGTGATTTCATGTAAGACCATATCC
1 GTGTAAGACCATATCTGGGACATCGCATCGGCAC-CGATATGAGATTTCATATAAGACCATATCC
* *** *
195073300 GGGATATGGCATTGATATG-AGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGATGTGAGG
65 GGGATATGGCATCGATATGTA-AGCCCATGTAAGACCATGTCTGGGACATGGCATTGATGTGAGG
195073364 TCCT
129 TCCT
* * ** * * *
195073368 GTGTAAGACCATGTGTGGGACATCGCATTTGCACCGATGTGAGATTTCGTATAAGACCATATCTG
1 GTGTAAGACCATATCTGGGACATCGCATCGGCACCGATATGAGATTTCATATAAGACCATATCCG
*
195073433 GGATTTGGCATCGATATGTAAGCCCATGTAAGACCATGTCTGGGACATGGC
66 GGATATGGCATCGATATGTAAGCCCATGTAAGACCATGTCTGGGACATGGC
195073484 TTTGGAATAC
Statistics
Matches: 96, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
132 94 0.98
133 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (132 bp):
GTGTAAGACCATATCTGGGACATCGCATCGGCACCGATATGAGATTTCATATAAGACCATATCCG
GGATATGGCATCGATATGTAAGCCCATGTAAGACCATGTCTGGGACATGGCATTGATGTGAGGTC
CT
Found at i:195073411 original size:90 final size:90
Alignment explanation
Indices: 195073317--195073480 Score: 222
Period size: 90 Copynumber: 1.8 Consensus size: 90
195073307 GGCATTGATA
* * * * * **
195073317 TGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGATGTG-AGGTCCTGTGTAAGACCATG
1 TGAGATTTCGTATAAGACCATATCTGGGACATGGCATCGATATGTAAG-CCCATGTAAGACCATG
*
195073381 TGTGGGACATCGCATTTGCACCGATG
65 TCTGGGACATCGCATTTGCACCGATG
**
195073407 TGAGATTTCGTATAAGACCATATCTGGGATTTGGCATCGATATGTAAGCCCATGTAAGACCATGT
1 TGAGATTTCGTATAAGACCATATCTGGGACATGGCATCGATATGTAAGCCCATGTAAGACCATGT
195073472 CTGGGACAT
66 CTGGGACAT
195073481 GGCTTTGGAA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
90 61 0.97
91 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (90 bp):
TGAGATTTCGTATAAGACCATATCTGGGACATGGCATCGATATGTAAGCCCATGTAAGACCATGT
CTGGGACATCGCATTTGCACCGATG
Found at i:195076064 original size:39 final size:39
Alignment explanation
Indices: 195076010--195076153 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
195076000 GAATGTTCGA
195076010 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
195076049 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
195076088 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
195076127 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
195076154 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:195076100 original size:78 final size:79
Alignment explanation
Indices: 195076011--195076193 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
195076001 AATGTTCGAG
195076011 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
195076075 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
195076089 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
195076154 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
195076168 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
195076194 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:195084076 original size:38 final size:39
Alignment explanation
Indices: 195084024--195084166 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
195084014 GAATGTTCGA
195084024 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
195084063 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
195084101 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
195084140 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
195084167 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:195084112 original size:77 final size:79
Alignment explanation
Indices: 195084025--195084206 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
195084015 AATGTTCGAG
195084025 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
195084088 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
195084102 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
195084167 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
195084181 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
195084207 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:195091112 original size:40 final size:39
Alignment explanation
Indices: 195090947--195091130 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
195090937 AAATTGAATG
* * *
195090947 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
195090987 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
195091027 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
195091067 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
195091106 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
195091131 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:195091155 original size:80 final size:81
Alignment explanation
Indices: 195090987--195091175 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
195090977 GCTGGAAATT
* * * *
195090987 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
195091052 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
195091068 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
195091131 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
195091147 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
195091176 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:195096119 original size:16 final size:18
Alignment explanation
Indices: 195096089--195096124 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
195096079 TTTTCAACCT
195096089 AAATTAAACTAAAATTAA
1 AAATTAAACTAAAATTAA
195096107 AAATTAAA-T-AAATTAA
1 AAATTAAACTAAAATTAA
195096123 AA
1 AA
195096125 TAAGTATGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 1 0.06
18 8 0.44
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATTAAACTAAAATTAA
Found at i:195105685 original size:32 final size:32
Alignment explanation
Indices: 195105644--195105707 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
195105634 CAAGAAGTCA
195105644 GATTTTTGGGTCATATTGTTTCAGGTGAAGGC
1 GATTTTTGGGTCATATTGTTTCAGGTGAAGGC
195105676 GATTTTTGGGTCATATTGTTTCAGGTGAAGGC
1 GATTTTTGGGTCATATTGTTTCAGGTGAAGGC
195105708 ATCCGAGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.19, C:0.09, G:0.31, T:0.41
Consensus pattern (32 bp):
GATTTTTGGGTCATATTGTTTCAGGTGAAGGC
Found at i:195111137 original size:71 final size:71
Alignment explanation
Indices: 195111053--195111216 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
195111043 CGATTTGTCT
195111053 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
195111118 CTTTCA
66 CTTTCA
* *
195111124 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
195111189 CTTTCA
66 CTTTCA
195111195 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
195111217 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:195111254 original size:71 final size:70
Alignment explanation
Indices: 195111053--195111250 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
195111043 CGATTTGTCT
* * * * *
195111053 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
195111118 CTTTCA
65 CTTTCA
* * * *
195111124 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
195111189 CTTTCA
65 CTTTCA
* *
195111195 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
195111251 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:195118676 original size:71 final size:71
Alignment explanation
Indices: 195118590--195118753 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
195118580 CGATTTGTCT
195118590 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
195118655 CTTTCA
66 CTTTCA
195118661 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
195118726 CTTTCA
66 CTTTCA
195118732 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
195118754 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:195118791 original size:71 final size:70
Alignment explanation
Indices: 195118590--195118787 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
195118580 CGATTTGTCT
* * * *
195118590 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
195118655 CTTTCA
65 CTTTCA
* * * *
195118661 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
195118726 CTTTCA
65 CTTTCA
* *
195118732 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
195118788 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:195129759 original size:40 final size:40
Alignment explanation
Indices: 195129692--195129836 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
195129682 AAATTGAATG
* ** * *
195129692 ATATCCGGGCTAAGCCCCGAAAACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
195129732 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ** *
195129772 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
* *
195129812 CTATCCGGGCTAGGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
195129837 TTTGTGCACG
Statistics
Matches: 86, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:195129837 original size:40 final size:39
Alignment explanation
Indices: 195129731--195129859 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
195129721 TGCTGGAAAT
* * *
195129731 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
195129771 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* * *
195129811 TCTATCCGGGCTAGGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
195129851 TATATCCGG
1 TATATCCGG
195129860 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:195134379 original size:17 final size:18
Alignment explanation
Indices: 195134338--195134380 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
195134328 TGTATTTACT
195134338 TATTATATAAGTAAATAA
1 TATTATATAAGTAAATAA
* *
195134356 TAATATA-AAGTAAATTA
1 TATTATATAAGTAAATAA
195134373 TATTATAT
1 TATTATAT
195134381 TATATAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
TATTATATAAGTAAATAA
Found at i:195134391 original size:18 final size:17
Alignment explanation
Indices: 195134368--195134404 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
195134358 ATATAAAGTA
*
195134368 AATTATATTATATTATAT
1 AATTATAATATATTA-AT
195134386 AATTATAATATATTAAT
1 AATTATAATATATTAAT
195134403 AA
1 AA
195134405 AATAAAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTATAATATATTAAT
Found at i:195134449 original size:15 final size:15
Alignment explanation
Indices: 195134429--195134462 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
195134419 AAAGAAAATA
* *
195134429 AAAGAAATAAAACAT
1 AAAGAAAAAAAACAG
195134444 AAAGAAAAAAAACAG
1 AAAGAAAAAAAACAG
195134459 AAAG
1 AAAG
195134463 GAACGAATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.76, C:0.06, G:0.12, T:0.06
Consensus pattern (15 bp):
AAAGAAAAAAAACAG
Found at i:195135366 original size:6 final size:6
Alignment explanation
Indices: 195135357--195135382 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
195135347 CCTGACTATG
195135357 ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT AC
195135383 CTACGGTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ACTGTT
Found at i:195140367 original size:30 final size:30
Alignment explanation
Indices: 195140323--195140411 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
195140313 CAAAGATAAC
195140323 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
195140352 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
195140382 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
195140412 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:195140371 original size:15 final size:15
Alignment explanation
Indices: 195140323--195140402 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
195140313 CAAAGATAAC
*
195140323 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
195140337 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
195140352 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
195140367 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
195140382 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
195140397 AAGAAA
1 AAGAAA
195140403 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:195140411 original size:15 final size:15
Alignment explanation
Indices: 195140334--195140411 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
195140324 AGAAAACCGA
195140334 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
195140349 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
195140363 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
195140378 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
195140394 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
195140409 ATA
1 ATA
195140412 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:195143461 original size:93 final size:93
Alignment explanation
Indices: 195143349--195143520 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
195143339 GCCCATAAGT
* *
195143349 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
195143414 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
195143442 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
195143507 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
195143521 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:195143516 original size:46 final size:46
Alignment explanation
Indices: 195143341--195143516 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
195143331 TGTAACCCGC
* * *
195143341 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
195143387 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
195143437 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
195143480 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
195143517 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:195146560 original size:27 final size:28
Alignment explanation
Indices: 195146504--195146573 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
195146494 AAATTTGTAC
195146504 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
195146532 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
195146559 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
195146574 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:195146584 original size:27 final size:27
Alignment explanation
Indices: 195146504--195146585 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
195146494 AAATTTGTAC
* *
195146504 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
195146532 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
195146559 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
195146586 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:195163193 original size:12 final size:12
Alignment explanation
Indices: 195163176--195163201 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
195163166 AAAACAGGGC
195163176 TTTAGCGGCGTT
1 TTTAGCGGCGTT
195163188 TTTAGCGGCGTT
1 TTTAGCGGCGTT
195163200 TT
1 TT
195163202 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:195163283 original size:41 final size:41
Alignment explanation
Indices: 195163238--195163431 Score: 309
Period size: 41 Copynumber: 4.7 Consensus size: 41
195163228 AACATAGAGT
* *
195163238 AATAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCGGAGC
1 AATAGCGGCGCTTTTGGTAAAACGCCGCTAGAAACCGGAGC
***
195163279 AATAGCGGCG-TTTTACCAAAAACGCCGCTAGAAACCGGAGC
1 AATAGCGGCGCTTTT-GGTAAAACGCCGCTAGAAACCGGAGC
195163320 AATAGCGGCGCTTTTGGTAAAACGCCGCTAGAAACCGGAGC
1 AATAGCGGCGCTTTTGGTAAAACGCCGCTAGAAACCGGAGC
*
195163361 ATTAGCGGCGCTTTTGGTAAAACGCCGCTAGAAACCGGAGC
1 AATAGCGGCGCTTTTGGTAAAACGCCGCTAGAAACCGGAGC
*
195163402 ATTAGCGGCGCTTTTGGTAAAACGCCGCTA
1 AATAGCGGCGCTTTTGGTAAAACGCCGCTA
195163432 AAAGTCATAT
Statistics
Matches: 143, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
40 4 0.03
41 135 0.94
42 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.19
Consensus pattern (41 bp):
AATAGCGGCGCTTTTGGTAAAACGCCGCTAGAAACCGGAGC
Found at i:195163523 original size:23 final size:22
Alignment explanation
Indices: 195163476--195163523 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
195163466 AAAAAATCAT
* *
195163476 AAACACTAATCTATAATCCTTA
1 AAACACTAAACTATAAACCTTA
*
195163498 AAACACTAAACTCCTAAACCTTA
1 AAACACTAAACT-ATAAACCTTA
195163521 AAA
1 AAA
195163524 AATCTTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (22 bp):
AAACACTAAACTATAAACCTTA
Found at i:195163723 original size:22 final size:22
Alignment explanation
Indices: 195163698--195163740 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
195163688 GAGTTATTAT
195163698 TTTAAGGTTTATGGA-TTATGGG
1 TTTAAGGTTTAT-GATTTATGGG
*
195163720 TTTAGGGTTTATGATTTATGG
1 TTTAAGGTTTATGATTTATGG
195163741 TTATGTAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
TTTAAGGTTTATGATTTATGGG
Found at i:195164137 original size:15 final size:14
Alignment explanation
Indices: 195164117--195164165 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 14
195164107 TAATTCTTCA
195164117 AAAAATTGAAAAATT
1 AAAAATT-AAAAATT
195164132 AAAAATTAAAAATT
1 AAAAATTAAAAATT
195164146 AAAAACTTAAAAACTT
1 AAAAA-TTAAAAA-TT
195164162 AAAA
1 AAAA
195164166 TTTTAATATT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
14 12 0.38
15 14 0.44
16 6 0.19
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (14 bp):
AAAAATTAAAAATT
Found at i:195164142 original size:6 final size:7
Alignment explanation
Indices: 195164117--195164165 Score: 71
Period size: 8 Copynumber: 6.6 Consensus size: 7
195164107 TAATTCTTCA
195164117 AAAAATT
1 AAAAATT
195164124 GAAAAATT
1 -AAAAATT
195164132 AAAAATT
1 AAAAATT
195164139 AAAAATT
1 AAAAATT
195164146 AAAAACTT
1 AAAAA-TT
195164154 AAAAACTT
1 AAAAA-TT
195164162 AAAA
1 AAAA
195164166 TTTTAATATT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
7 19 0.47
8 21 0.52
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (7 bp):
AAAAATT
Found at i:195164167 original size:22 final size:22
Alignment explanation
Indices: 195164117--195164165 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
195164107 TAATTCTTCA
195164117 AAAAATTGAAAAATTAAAAATT
1 AAAAATTGAAAAATTAAAAATT
195164139 AAAAATT-AAAAACTTAAAAACTT
1 AAAAATTGAAAAA-TTAAAAA-TT
195164162 AAAA
1 AAAA
195164166 TTTTAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 5 0.20
22 14 0.56
23 6 0.24
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (22 bp):
AAAAATTGAAAAATTAAAAATT
Found at i:195166867 original size:17 final size:18
Alignment explanation
Indices: 195166845--195166882 Score: 69
Period size: 17 Copynumber: 2.2 Consensus size: 18
195166835 CTTGATCCTC
195166845 TGTTAAATGTAATTAA-A
1 TGTTAAATGTAATTAATA
195166862 TGTTAAATGTAATTAATA
1 TGTTAAATGTAATTAATA
195166880 TGT
1 TGT
195166883 ATTACAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (18 bp):
TGTTAAATGTAATTAATA
Found at i:195166893 original size:16 final size:15
Alignment explanation
Indices: 195166872--195166901 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
195166862 TGTTAAATGT
195166872 AATTAATATGTATTAC
1 AATTAATATG-ATTAC
195166888 AATTAATATGATTA
1 AATTAATATGATTA
195166902 ACTTAATCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (15 bp):
AATTAATATGATTAC
Found at i:195169621 original size:43 final size:43
Alignment explanation
Indices: 195169565--195169668 Score: 181
Period size: 43 Copynumber: 2.4 Consensus size: 43
195169555 TAAATTTTTA
195169565 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCC
1 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCC
* * *
195169608 TGACCTTTCGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCT
1 TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCC
195169651 TGACCTTTAGCGGCGTTT
1 TGACCTTTAGCGGCGTTT
195169669 TTTCAAATAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.28
Consensus pattern (43 bp):
TGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCC
Found at i:195171723 original size:19 final size:19
Alignment explanation
Indices: 195171699--195171738 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
195171689 TTGGCCGAAA
195171699 TGGGCCAAAATGGGCT-GTG
1 TGGGCC-AAATGGGCTCGTG
*
195171718 TGGGCCCAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
195171737 TG
1 TG
195171739 CCCAAACGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.15, C:0.20, G:0.42, T:0.23
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:195172002 original size:27 final size:27
Alignment explanation
Indices: 195171957--195172196 Score: 180
Period size: 27 Copynumber: 8.9 Consensus size: 27
195171947 AAGACCCTCG
*
195171957 ATTTGTAAAATT-TTCGAAATACCCCCA
1 ATTTGTAAAATTACT-GAAATACCCCCA
** **
195171984 GGTTGTAAAATTACTGAAATACCCTTA
1 ATTTGTAAAATTACTGAAATACCCCCA
* * * *
195172011 ATTTGTGAGATTATTGAAATACCCTCA
1 ATTTGTAAAATTACTGAAATACCCCCA
*
195172038 ATTTGTGAAATTACTGAAATACCCCCA
1 ATTTGTAAAATTACTGAAATACCCCCA
** * * *
195172065 GGTTATAAAATTACTGAAATAACCCTA
1 ATTTGTAAAATTACTGAAATACCCCCA
* * *
195172092 ATTTTTAAAATTACTGAAATACCCTCG
1 ATTTGTAAAATTACTGAAATACCCCCA
** * **
195172119 ATTTGTGTAATTA-TCAAAATACCCCTG
1 ATTTGTAAAATTACT-GAAATACCCCCA
* * * *
195172146 ACTTGTAAGATCACTGAAATA-TCCCA
1 ATTTGTAAAATTACTGAAATACCCCCA
* *
195172172 ATTTATAAAATTACTAAAATACCCC
1 ATTTGTAAAATTACTGAAATACCCC
195172197 TGTGGGGTAG
Statistics
Matches: 161, Mismatches: 48, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
26 19 0.12
27 140 0.87
28 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
ATTTGTAAAATTACTGAAATACCCCCA
Found at i:195172085 original size:81 final size:82
Alignment explanation
Indices: 195171950--195172195 Score: 270
Period size: 81 Copynumber: 3.0 Consensus size: 82
195171940 GGTCGTTAAG
* * *
195171950 ACCCTCGATTTGTAAAATT-TTCGAAATACCCCCAGGTTGTAAAATTACTGAAAT-ACCCTTAAT
1 ACCCTCGATTTGTGAAATTACTCGAAATACCCCCAGGTTATAAAATTACTGAAATAACCC-TAAT
* * *
195172013 TTGTGAGATTATTGAAAT
65 TTGTAAAATTACTGAAAT
*
195172031 ACCCTCAATTTGTGAAATTACT-GAAATACCCCCAGGTTATAAAATTACTGAAATAACCCTAATT
1 ACCCTCGATTTGTGAAATTACTCGAAATACCCCCAGGTTATAAAATTACTGAAATAACCCTAATT
*
195172095 TTTAAAATTACTGAAAT
66 TGTAAAATTACTGAAAT
* * * * * * * *
195172112 ACCCTCGATTTGTGTAATTA-TCAAAATA-CCCCTGACTTGTAAGATCACTGAAATATCCC-AAT
1 ACCCTCGATTTGTGAAATTACTCGAAATACCCCCAG-GTTATAAAATTACTGAAATAACCCTAAT
* *
195172174 TTATAAAATTACTAAAAT
65 TTGTAAAATTACTGAAAT
195172192 ACCC
1 ACCC
195172196 CTGTGGGGTA
Statistics
Matches: 142, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
80 29 0.20
81 108 0.76
82 5 0.04
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.33
Consensus pattern (82 bp):
ACCCTCGATTTGTGAAATTACTCGAAATACCCCCAGGTTATAAAATTACTGAAATAACCCTAATT
TGTAAAATTACTGAAAT
Found at i:195172295 original size:27 final size:27
Alignment explanation
Indices: 195172188--195172286 Score: 144
Period size: 27 Copynumber: 3.7 Consensus size: 27
195172178 AAAATTACTA
*
195172188 AAATACCCCTGTGGGGTAGGATTACCG
1 AAATACCCCTGTAGGGTAGGATTACCG
* *
195172215 AAATACCCCTGTAGGATAGGATTATCG
1 AAATACCCCTGTAGGGTAGGATTACCG
* *
195172242 AAATACCCTTGTAGTGTAGGATTACCG
1 AAATACCCCTGTAGGGTAGGATTACCG
*
195172269 AAATACCCTTGTAGGGTA
1 AAATACCCCTGTAGGGTA
195172287 AAATAACCGT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGGATTACCG
Found at i:195174797 original size:2 final size:2
Alignment explanation
Indices: 195174790--195174825 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
195174780 AAATACATGC
195174790 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
195174826 GAGCTTACAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:195178446 original size:46 final size:45
Alignment explanation
Indices: 195178379--195178548 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 45
195178369 CCGCCCCTAT
* *
195178379 GTGAACTCGGACTCAACTCAATGAGCTCGGACGTTCGCATCCATAA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT-CATAA
* * * *
195178425 GTGAACTCGGACTGAACTCAATGAGTTCGGATGCCTAGTT-ACATC-TCA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCATCATAA
* * *
195178473 -CGAATTCGGACTCAACTCAACGAGTTCGGACATTCGCATACATAA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT-CATAA
195178518 GTGAACTCGGACTCAACTCAACGAGTTCGGA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGA
195178549 TGCCCAAATA
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 57 0.56
47 26 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (45 bp):
GTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCATAA
Found at i:195182858 original size:93 final size:93
Alignment explanation
Indices: 195182751--195182922 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
195182741 GCCCCTAAGT
* * *
195182751 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTGAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
195182816 TGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
195182844 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
195182909 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
195182923 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:195182918 original size:46 final size:46
Alignment explanation
Indices: 195182746--195182918 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
195182736 AACCCGCCCC
* * *
195182746 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * * *
195182792 TAAGTGAACTCGGACTGAACTCAATGAGTTTGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
195182840 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
195182885 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
195182919 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.56
47 26 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:195187147 original size:40 final size:40
Alignment explanation
Indices: 195187092--195187300 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
195187082 AACATTGGAA
195187092 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
195187132 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
195187172 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
195187211 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
195187250 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
195187291 CTATATCCGG
1 ATATATCCGG
195187301 TTAAATCCCG
Statistics
Matches: 149, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 41 0.28
40 108 0.72
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:195187224 original size:79 final size:79
Alignment explanation
Indices: 195187092--195187300 Score: 294
Period size: 79 Copynumber: 2.6 Consensus size: 79
195187082 AACATTGGAA
195187092 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* *
195187157 CATTCGTGCGAGTTG
66 CATTCGTGCAAG-TC
195187172 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* *
195187236 CCTTTGTGCAAGTC
66 CATTCGTGCAAGTC
* * * * * * *
195187250 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCGCTATATCCGG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGG
195187301 TTAAATCCCG
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
78 2 0.02
79 68 0.59
80 46 0.40
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (79 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CATTCGTGCAAGTC
Found at i:195190969 original size:46 final size:48
Alignment explanation
Indices: 195190918--195191048 Score: 166
Period size: 46 Copynumber: 2.8 Consensus size: 48
195190908 ATGGTTGAGC
195190918 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACTAG
* * *
195190965 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTA-G
195191010 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
195191049 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 29 0.41
48 2 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTAG
Found at i:195194024 original size:15 final size:15
Alignment explanation
Indices: 195193985--195194063 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
195193975 GTATCTTGGG
*
195193985 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
195194000 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
195194015 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
195194029 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
195194044 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
195194058 TTTCTT
1 TTTCTT
195194064 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:195194048 original size:29 final size:29
Alignment explanation
Indices: 195193976--195194062 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
195193966 CATAGTATCG
* * * *
195193976 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
195194006 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
195194035 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
195194063 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:195199533 original size:15 final size:15
Alignment explanation
Indices: 195199494--195199572 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
195199484 GTATCTTGGG
*
195199494 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
195199509 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
195199524 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
195199538 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
195199553 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
195199567 TTTCTT
1 TTTCTT
195199573 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:195199557 original size:29 final size:29
Alignment explanation
Indices: 195199485--195199571 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
195199475 CATAGTATCG
* * * *
195199485 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
195199515 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
195199544 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
195199572 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:195205030 original size:15 final size:15
Alignment explanation
Indices: 195204991--195205069 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
195204981 GTATCTTGGG
*
195204991 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
195205006 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
195205021 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
195205035 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
195205050 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
195205064 TTTCTT
1 TTTCTT
195205070 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:195205054 original size:29 final size:29
Alignment explanation
Indices: 195204982--195205068 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
195204972 CATAGTATCG
* * * *
195204982 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
195205012 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
195205041 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
195205069 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:195207575 original size:46 final size:46
Alignment explanation
Indices: 195207412--195207584 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
195207402 GGTTGAGCAT
*
195207412 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
195207456 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
195207501 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
195207549 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
195207585 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:195210550 original size:15 final size:15
Alignment explanation
Indices: 195210530--195210598 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
195210520 GTATCTTGGG
195210530 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
195210545 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
195210560 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
195210575 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
195210590 TTTCTTTAT
1 TTTCTTTAT
195210599 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:195210599 original size:30 final size:30
Alignment explanation
Indices: 195210521--195210608 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
195210511 CATAGTATCG
* * * *
195210521 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
195210551 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
195210581 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
195210609 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:195213132 original size:46 final size:46
Alignment explanation
Indices: 195212969--195213141 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
195212959 GGTTGAGCAT
*
195212969 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
195213013 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
195213058 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
195213106 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
195213142 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:195216111 original size:15 final size:15
Alignment explanation
Indices: 195216091--195216159 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
195216081 GTATCTTGGG
195216091 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
195216106 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
195216121 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
195216136 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
195216151 TTTCTTTAT
1 TTTCTTTAT
195216160 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:195216160 original size:30 final size:30
Alignment explanation
Indices: 195216082--195216169 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
195216072 CATAGTATCG
* * * *
195216082 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
195216112 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
195216142 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
195216170 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:195218673 original size:46 final size:46
Alignment explanation
Indices: 195218510--195218682 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
195218500 TGGTTGGCAT
*
195218510 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
195218554 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
195218599 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
195218647 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
195218683 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:195219970 original size:34 final size:34
Alignment explanation
Indices: 195219927--195219995 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
195219917 TTTAATTAAT
195219927 GAATTAAGTCCGTTAACACCTCGTGTTCGACTCC
1 GAATTAAGTCCGTTAACACCTCGTGTTCGACTCC
195219961 GAATTAAGTCCGTTAACACCTCGTGTTCGACTCC
1 GAATTAAGTCCGTTAACACCTCGTGTTCGACTCC
195219995 G
1 G
195219996 GCAACGGTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (34 bp):
GAATTAAGTCCGTTAACACCTCGTGTTCGACTCC
Found at i:195225193 original size:40 final size:40
Alignment explanation
Indices: 195225131--195225383 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
195225121 AAGCCAAGTA
* * * *
195225131 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
195225170 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
195225210 CCTTCGGGACTTAGCCCGGATATAGTAACTCTCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
195225250 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
195225290 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
195225330 CCTTCGGGACTTAGCCC-GA-ACTAGTCACTAGC-CAAAT-
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
195225367 CCTTC-GGAC-TAGCCCGG
1 CCTTCGGGACTTAGCCCGG
195225384 TATCATCCAA
Statistics
Matches: 199, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
35 6 0.03
36 5 0.03
37 5 0.03
38 6 0.03
39 23 0.12
40 154 0.77
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:195233393 original size:40 final size:40
Alignment explanation
Indices: 195233356--195233547 Score: 296
Period size: 40 Copynumber: 4.8 Consensus size: 40
195233346 GGGTATAGCT
* * *
195233356 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
195233396 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
195233436 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
195233476 ACTCGCACAAACGCCTTCGGGAGTTAGCCCGGA-ACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
*
195233516 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
195233548 TTATCATCCA
Statistics
Matches: 141, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 140 0.99
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.21
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:195241538 original size:28 final size:28
Alignment explanation
Indices: 195241492--195241560 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
195241482 TTTAAAACCC
*
195241492 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
195241519 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
195241547 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
195241561 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:195249544 original size:28 final size:28
Alignment explanation
Indices: 195249498--195249566 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
195249488 TTTAAAACCC
*
195249498 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
195249525 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
195249553 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
195249567 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:195252513 original size:26 final size:26
Alignment explanation
Indices: 195252484--195252535 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
195252474 CATATTCAGA
195252484 CATAACA-AATATAAATTCTAACATTT
1 CATAACAGAATATAAATT-TAACATTT
* * *
195252510 CATAGCAGCATATATATTTAACATTT
1 CATAACAGAATATAAATTTAACATTT
195252536 AACTACTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.37
Consensus pattern (26 bp):
CATAACAGAATATAAATTTAACATTT
Found at i:195259607 original size:19 final size:19
Alignment explanation
Indices: 195259583--195259697 Score: 184
Period size: 19 Copynumber: 6.2 Consensus size: 19
195259573 AATCTTTAAG
195259583 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
195259602 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
195259621 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
195259638 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
195259657 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
195259674 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
195259695 GAT
1 GAT
195259698 CTTGTAATCT
Statistics
Matches: 90, Mismatches: 0, Indels: 10
0.90 0.00 0.10
Matches are distributed among these distances:
17 34 0.38
19 47 0.52
21 9 0.10
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:195259613 original size:36 final size:34
Alignment explanation
Indices: 195259583--195259696 Score: 167
Period size: 36 Copynumber: 3.2 Consensus size: 34
195259573 AATCTTTAAG
195259583 GATATG-CAATCTTAGATATGATATGCAATCTTA
1 GATATGACAATCTTAGATATGATATGCAATCTTA
195259616 GATATGATACAATCTTAGATATGATATGCAATCTTA
1 GATATG--ACAATCTTAGATATGATATGCAATCTTA
195259652 GATATGATACAATCTTAGATATGATATGCAATCTTGAA
1 GATATG--ACAATCTTAGATATGATATGCAATCTT--A
195259690 GATATGA
1 GATATGA
195259697 TCTTGTAATC
Statistics
Matches: 76, Mismatches: 0, Indels: 7
0.92 0.00 0.08
Matches are distributed among these distances:
33 6 0.08
36 63 0.83
38 7 0.09
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (34 bp):
GATATGACAATCTTAGATATGATATGCAATCTTA
Found at i:195266779 original size:21 final size:21
Alignment explanation
Indices: 195266753--195266793 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
195266743 ATCTGCTCAA
*
195266753 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGTTGTGGAGTAC
195266774 ACTCCACCTGTTGTGGAGTA
1 ACTCCACCTGTTGTGGAGTA
195266794 TCGCTCGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGTTGTGGAGTAC
Found at i:195268359 original size:53 final size:53
Alignment explanation
Indices: 195268301--195268408 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
195268291 TCCGAGTGTA
195268301 TGAACGACCTCGGACTACTAAAGCTTCTGTATCTCTGATTGAGTTTTTCTGTT
1 TGAACGACCTCGGACTACTAAAGCTTCTGTATCTCTGATTGAGTTTTTCTGTT
195268354 TGAACGACCTCGGACTACTAAAGCTTCTGTATCTCTGATTGAGTTTTTCTGTT
1 TGAACGACCTCGGACTACTAAAGCTTCTGTATCTCTGATTGAGTTTTTCTGTT
195268407 TG
1 TG
195268409 TCCTTCTTTC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.40
Consensus pattern (53 bp):
TGAACGACCTCGGACTACTAAAGCTTCTGTATCTCTGATTGAGTTTTTCTGTT
Found at i:195273485 original size:17 final size:18
Alignment explanation
Indices: 195273463--195273496 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
195273453 GAACTATGAA
195273463 GGCATTCGATC-TTTCAT
1 GGCATTCGATCGTTTCAT
195273480 GGCATTCGATCGTTTCA
1 GGCATTCGATCGTTTCA
195273497 ATGAAAGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (18 bp):
GGCATTCGATCGTTTCAT
Found at i:195275241 original size:2 final size:2
Alignment explanation
Indices: 195275187--195275222 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
195275177 AAAGAAAATG
195275187 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
195275223 GACTCAGAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:195275933 original size:12 final size:12
Alignment explanation
Indices: 195275916--195275941 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
195275906 AAAATAGGGC
195275916 TTTAGCGGCGTT
1 TTTAGCGGCGTT
195275928 TTTAGCGGCGTT
1 TTTAGCGGCGTT
195275940 TT
1 TT
195275942 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:195276121 original size:81 final size:82
Alignment explanation
Indices: 195275965--195276255 Score: 394
Period size: 81 Copynumber: 3.6 Consensus size: 82
195275955 GTAAAAATTG
* * *
195275965 TAAAACACAGAGCAATAGCGGCG-TTTTAT-TAAAAACGCCACTAAAA-ACAGAGCAATAGCGGC
1 TAAAACACAGAGCAATAGCGGCGCTTTT-TGT-AAAACGCCGCTAAAAGGCAGAGCATTAGCGGC
* * * *
195276027 GTTTTTTATTAAAATGCCAC
64 GCTTTTT-GTAAAACGCCGC
* *
195276047 TAAAA-ACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGGCGGAGCATTAGCGGCGC
1 TAAAACACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGCTAAAAGGCAGAGCATTAGCGGCGC
195276111 TTTTTGTAAAACGCCGC
66 TTTTTGTAAAACGCCGC
195276128 TAAAA-ACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGCTAAAAGGCAGAGCATTAGCGGCGC
1 TAAAACACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGCTAAAAGGCAGAGCATTAGCGGCGC
*
195276192 TTATTGTAAAACGCCGC
66 TTTTTGTAAAACGCCGC
** * *
195276209 TAAAAGTCGGAGCATTAGCGGCGCTTTTTGTAAAACGCCGCTAAAAG
1 TAAAACACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGCTAAAAG
195276256 TCATATAACC
Statistics
Matches: 190, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
81 123 0.65
82 67 0.35
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.21
Consensus pattern (82 bp):
TAAAACACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGCTAAAAGGCAGAGCATTAGCGGCGC
TTTTTGTAAAACGCCGC
Found at i:195276187 original size:122 final size:122
Alignment explanation
Indices: 195275974--195276254 Score: 417
Period size: 122 Copynumber: 2.3 Consensus size: 122
195275964 GTAAAACACA
* * * *
195275974 GAGCAATAGCGGCG-TTTTAT-TAAAAACGCCACTAAAAACAGAGCAATAGCGGCGTTTTTTATT
1 GAGCATTAGCGGCGCTTTT-TGT-AAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTTAGT
*
195276037 AAAATGCCACTAAAAACAGAGCAATAGCGGCGCTT-TTGGTAAAACGCCGCTAAAAGGCG
64 AAAACGCCACTAAAAACAGAGCAATAGCGGCGCTTATT-GTAAAACGCCGCTAAAAGGCG
195276096 GAGCATTAGCGGCGCTTTTTGTAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTT-GTAA
1 GAGCATTAGCGGCGCTTTTTGTAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTTAGTAA
* * * *
195276160 AACGCCGCTAAAAGGCAGAGCATTAGCGGCGCTTATTGTAAAACGCCGCTAAAAGTCG
66 AACGCCACTAAAA-ACAGAGCAATAGCGGCGCTTATTGTAAAACGCCGCTAAAAGGCG
195276218 GAGCATTAGCGGCGCTTTTTGTAAAACGCCGCTAAAA
1 GAGCATTAGCGGCGCTTTTTGTAAAACGCCGCTAAAA
195276255 GTCATATAAC
Statistics
Matches: 146, Mismatches: 9, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
121 14 0.10
122 125 0.86
123 7 0.05
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (122 bp):
GAGCATTAGCGGCGCTTTTTGTAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTTTAGTAA
AACGCCACTAAAAACAGAGCAATAGCGGCGCTTATTGTAAAACGCCGCTAAAAGGCG
Found at i:195276257 original size:41 final size:41
Alignment explanation
Indices: 195275965--195276255 Score: 376
Period size: 41 Copynumber: 7.1 Consensus size: 41
195275955 GTAAAAATTG
* *
195275965 TAAAACACAGAGCAATAGCGGCG-TTTTAT-TAAAAACGCCAC
1 TAAAAGACAGAGCAATAGCGGCGCTTTT-TGT-AAAACGCCGC
* * * *
195276006 TAAAA-ACAGAGCAATAGCGGCGTTTTTTATTAAAATGCCAC
1 TAAAAGACAGAGCAATAGCGGCGCTTTTT-GTAAAACGCCGC
*
195276047 TAAAA-ACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAGACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGC
* * *
195276087 TAAAAGGCGGAGCATTAGCGGCGCTTTTTGTAAAACGCCGC
1 TAAAAGACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGC
195276128 TAAAA-ACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGC
1 TAAAAGACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGC
* * *
195276168 TAAAAGGCAGAGCATTAGCGGCGCTTATTGTAAAACGCCGC
1 TAAAAGACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGC
* * *
195276209 TAAAAGTCGGAGCATTAGCGGCGCTTTTTGTAAAACGCCGC
1 TAAAAGACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGC
195276250 TAAAAG
1 TAAAAG
195276256 TCATATAACC
Statistics
Matches: 226, Mismatches: 19, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
40 69 0.31
41 156 0.69
42 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.21
Consensus pattern (41 bp):
TAAAAGACAGAGCAATAGCGGCGCTTTTTGTAAAACGCCGC
Found at i:195276542 original size:15 final size:15
Alignment explanation
Indices: 195276503--195276553 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
195276493 CGGTTTAATA
*
195276503 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* * *
195276517 TCTATGATTTAGGGT
1 TTTATGGTTTAAGGT
195276532 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
195276547 TTAATGG
1 TTTATGG
195276554 CTATGGGTAT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 10 0.36
15 18 0.64
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:195279749 original size:137 final size:137
Alignment explanation
Indices: 195279503--195279789 Score: 511
Period size: 137 Copynumber: 2.1 Consensus size: 137
195279493 CATTGGGCCT
* **
195279503 AAGCCCATTTAGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAAATTACAATAAATTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAAATTACAATAAACCGGGCCTT
* *
195279568 AGCCCCTTATTCAGATAATAGTATGGCCCATAGGCCCATTTCAAAATACGTGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
195279633 CATATGC
131 CATATGC
* *
195279640 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACCGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAAATTACAATAAACCGGGCCTT
195279705 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
195279770 CATATGC
131 CATATGC
195279777 AAGCCCATTTGGG
1 AAGCCCATTTGGG
195279790 GAGACTACTC
Statistics
Matches: 143, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 143 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAAATTACAATAAACCGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:195280074 original size:25 final size:27
Alignment explanation
Indices: 195280037--195280089 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
195280027 TCAAACATGC
195280037 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
195280063 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
195280089 A
1 A
195280090 AAATTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:195281612 original size:26 final size:26
Alignment explanation
Indices: 195281576--195281633 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 26
195281566 CATGAAATTC
195281576 TTATCATGAAACATTTACCTAACAC-A
1 TTATCATGAAACATTTACCTAAC-CTA
195281602 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
195281628 TTATCA
1 TTATCA
195281634 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 1 0.03
26 30 0.97
ACGTcount: A:0.40, C:0.22, G:0.03, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:195285194 original size:43 final size:43
Alignment explanation
Indices: 195285156--195285393 Score: 248
Period size: 43 Copynumber: 5.5 Consensus size: 43
195285146 TGCTAAAAAC
195285156 CATGACCTTTAGCGGCGTTTTTAGAAAAAGCGCCGCTAAAGGT
1 CATGACCTTTAGCGGCGTTTTTAGAAAAAGCGCCGCTAAAGGT
** * * * *
195285199 CATGGTCTTTAGCGGCGTTTTCAGGAAAAGCTCTGCTAAAGGT
1 CATGACCTTTAGCGGCGTTTTTAGAAAAAGCGCCGCTAAAGGT
* * * *
195285242 CATGACCTTTTAGCGGCATTTGTAGGAAAAGCGTCGCTAAAGGT
1 CATGACC-TTTAGCGGCGTTTTTAGAAAAAGCGCCGCTAAAGGT
* * **
195285286 CATGACCTTTAGCAGCGCTTTTCCT-G-AAAA-CGCCACTAAAGAC
1 CATGACCTTTAGCGGCG-TTTT--TAGAAAAAGCGCCGCTAAAGGT
* * * * *
195285329 CATGACCTTTAGCGGCATTTGTGGTAAAAGCGCCGCTAAAAGT
1 CATGACCTTTAGCGGCGTTTTTAGAAAAAGCGCCGCTAAAGGT
195285372 CATGACCTTTAGCGGCGTTTTT
1 CATGACCTTTAGCGGCGTTTTT
195285394 TAAAATAAAC
Statistics
Matches: 158, Mismatches: 30, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 7 0.04
43 103 0.65
44 44 0.28
45 1 0.01
46 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGTTTTTAGAAAAAGCGCCGCTAAAGGT
Found at i:195285296 original size:87 final size:85
Alignment explanation
Indices: 195285148--195285392 Score: 305
Period size: 86 Copynumber: 2.8 Consensus size: 85
195285138 TAAAGTGCTG
* * * * **
195285148 CTAAAAACCATGACCTTTAGCGGCGTTTTTAGAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
1 CTAAAGACCATGACCTTTAGCGGCATTTGTAGGAAAAGCGCCGCTAAAGGTCATGACCTTTAGCG
*
195285213 GCGTTTTCAGGAAAA-GCTCTG
66 GCGTTTTCAGGAAAACGC-C-A
** *
195285234 CTAAAGGTCATGACCTTTTAGCGGCATTTGTAGGAAAAGCGTCGCTAAAGGTCATGACCTTTAGC
1 CTAAAGACCATGACC-TTTAGCGGCATTTGTAGGAAAAGCGCCGCTAAAGGTCATGACCTTTAGC
* **
195285299 AGCGCTTTTCCTGAAAACGCCA
65 GGCG-TTTTCAGGAAAACGCCA
*
195285321 CTAAAGACCATGACCTTTAGCGGCATTTGT-GGTAAAAGCGCCGCTAAAAGTCATGACCTTTAGC
1 CTAAAGACCATGACCTTTAGCGGCATTTGTAGG-AAAAGCGCCGCTAAAGGTCATGACCTTTAGC
195285385 GGCGTTTT
65 GGCGTTTT
195285393 TTAAAATAAA
Statistics
Matches: 137, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
85 6 0.04
86 59 0.43
87 59 0.43
88 11 0.08
89 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (85 bp):
CTAAAGACCATGACCTTTAGCGGCATTTGTAGGAAAAGCGCCGCTAAAGGTCATGACCTTTAGCG
GCGTTTTCAGGAAAACGCCA
Found at i:195286002 original size:2 final size:2
Alignment explanation
Indices: 195285956--195285983 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
195285946 AAAGAAAATG
195285956 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
195285984 GACTCAGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:195289114 original size:22 final size:22
Alignment explanation
Indices: 195289083--195289139 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
195289073 CATACTATTT
* *
195289083 TTTTTCATTTG-TAACCATACTA
1 TTTTTAATTTGCT-ACCACACTA
**
195289105 TTTTTAATTTGCTTTCACACTA
1 TTTTTAATTTGCTACCACACTA
195289127 TTTTTAATTTGCT
1 TTTTTAATTTGCT
195289140 TTCAACATTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 29 0.97
23 1 0.03
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.56
Consensus pattern (22 bp):
TTTTTAATTTGCTACCACACTA
Found at i:195289140 original size:22 final size:22
Alignment explanation
Indices: 195289101--195289143 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
195289091 TTGTAACCAT
195289101 ACTATTTTTAATTTGCTTTCAC
1 ACTATTTTTAATTTGCTTTCAC
195289123 ACTATTTTTAATTTGCTTTCA
1 ACTATTTTTAATTTGCTTTCA
195289144 ACATTGTGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.56
Consensus pattern (22 bp):
ACTATTTTTAATTTGCTTTCAC
Found at i:195291102 original size:19 final size:19
Alignment explanation
Indices: 195291078--195291156 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
195291068 AATCTTTAAG
195291078 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
195291097 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
195291116 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
195291133 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
195291154 GAT
1 GAT
195291157 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:195291108 original size:36 final size:36
Alignment explanation
Indices: 195291068--195291155 Score: 119
Period size: 36 Copynumber: 2.4 Consensus size: 36
195291058 ATGGAAATAT
195291068 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGACAATCTTAGATATGATATGC
195291104 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG--ACAATCTTAGATATGATATGC
*
195291140 AATCTTGAAGATATGA
1 AATCTTTAAGATATGA
195291156 TCTTGTAATC
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 29 0.63
37 1 0.02
38 7 0.15
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (36 bp):
AATCTTTAAGATATGACAATCTTAGATATGATATGC
Found at i:195300587 original size:39 final size:40
Alignment explanation
Indices: 195300438--195300690 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
195300428 AAGCCAAGTA
* * *
195300438 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
195300476 CCTT-GGGACATAGCCCGGATATAGTAACTCACAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
195300514 CCTT-GGGACTTAGCCCGGATACAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
195300553 CCTTCGGGACTTAGCCCGGATATAGTAACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
195300592 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
195300632 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
195300672 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
195300691 TTATCATCCA
Statistics
Matches: 195, Mismatches: 14, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
37 7 0.04
38 54 0.28
39 48 0.25
40 86 0.44
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:195300632 original size:79 final size:79
Alignment explanation
Indices: 195300438--195300690 Score: 349
Period size: 79 Copynumber: 3.2 Consensus size: 79
195300428 AAGCCAAGTA
* * * *
195300438 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATGCCTT-GGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
195300499 GTAACT-CACACAATG
65 GTAACTGCACA-AATG
* *
195300514 CCTT-GGGACTTAGCCCGGATACAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
195300578 TAACTGCACAAATG
66 TAACTGCACAAATG
195300592 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
* *
195300656 GTCACTAGCGCAAATG
65 GTAACT-GCACAAATG
195300672 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
195300691 TTATCATCCA
Statistics
Matches: 159, Mismatches: 10, Indels: 12
0.88 0.06 0.07
Matches are distributed among these distances:
75 7 0.04
76 20 0.13
77 8 0.05
78 33 0.21
79 64 0.40
80 27 0.17
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTGCACAAATG
Found at i:195303673 original size:93 final size:93
Alignment explanation
Indices: 195303547--195303717 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
195303537 GCCCCTAAGT
* *
195303547 GAACTCGGACTCAACTCAATGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
195303612 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
* * *
195303640 GAACTTGGACTCAACTCAACGAGTTC-GAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAG-ACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
195303704 ACGAGTTCGAATGC
65 ACGAGTTCGAATGC
195303718 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:195303714 original size:46 final size:46
Alignment explanation
Indices: 195303540--195303713 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
195303530 GTAACCCGCC
* * *
195303540 CCTAAGTGAACTCGGACTCAACTCAATGAGCTC-AGGCATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
* *
195303585 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA-GAC-A-TTCGCAT
* * *
195303635 -CTCA-CGAACTTGGACTCAACTCAACGAGTTCGA-ACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
195303678 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGA
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGA
195303714 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 12, Indels: 19
0.78 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 58 0.54
47 25 0.23
48 3 0.03
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
Found at i:195303733 original size:46 final size:46
Alignment explanation
Indices: 195303540--195303733 Score: 143
Period size: 46 Copynumber: 4.2 Consensus size: 46
195303530 GTAACCCGCC
* * * *
195303540 CCTAAGTGAACTCGGACTCAACTCAATGAGCTC--AGGCATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGC--TCAACAT
*
195303585 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCTC-A---ACAT
* * * *** *
195303635 -CTCA-CGAACTTGGACTCAACTCAACGAGTTCGAACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCTCAACAT
195303678 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCTCAA-CAT
195303726 CCT-AGTGA
1 CCTAAGTGA
195303734 CATGTCACTT
Statistics
Matches: 116, Mismatches: 19, Indels: 27
0.72 0.12 0.17
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 5 0.04
46 64 0.55
47 28 0.24
48 11 0.09
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCTCAACAT
Found at i:195305447 original size:46 final size:45
Alignment explanation
Indices: 195305267--195305446 Score: 164
Period size: 46 Copynumber: 3.9 Consensus size: 45
195305257 TTTGTGTGCT
* * **
195305267 AGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTA-AAGATGAGAGCC
* ** * *
195305313 AGTGTAAAACCATGTCTGGGACATGGCATCAACATTAAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TAAAGATGAGAGCC
* * **
195305361 AGTGTAAGAAATGTCTGGGACAAGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTAAAGATG-AGAGCC
*
195305407 AGTGTAAGATATGTCTGGGACATGCATCGGCTAAGAGATG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTAA-AGATG
195305447 TGTCAATTTA
Statistics
Matches: 107, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 2 0.02
46 55 0.51
47 27 0.25
48 23 0.21
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTAAAGATGAGAGCC
Found at i:195308583 original size:14 final size:14
Alignment explanation
Indices: 195308564--195308590 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
195308554 ATTGTTCCAA
195308564 TGATCCAACGCTTT
1 TGATCCAACGCTTT
195308578 TGATCCAACGCTT
1 TGATCCAACGCTT
195308591 AAGAAGACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (14 bp):
TGATCCAACGCTTT
Found at i:195310093 original size:45 final size:45
Alignment explanation
Indices: 195310027--195310119 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
195310017 GGACTTGTTA
*
195310027 ATGTTATGAATATGTCTTAATAAAGAGTGTTTAATCACTAAAATG
1 ATGTTATGAATATGTCCTAATAAAGAGTGTTTAATCACTAAAATG
195310072 ATGTTATGAATATGTCCTAATAAAGAGTGTTTAATCACTAAAATG
1 ATGTTATGAATATGTCCTAATAAAGAGTGTTTAATCACTAAAATG
195310117 ATG
1 ATG
195310120 CCATGAATTG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.37
Consensus pattern (45 bp):
ATGTTATGAATATGTCCTAATAAAGAGTGTTTAATCACTAAAATG
Found at i:195310112 original size:21 final size:21
Alignment explanation
Indices: 195310044--195310112 Score: 54
Period size: 21 Copynumber: 3.1 Consensus size: 21
195310034 GAATATGTCT
195310044 TAATAAAGAGTGTTTAATCAC
1 TAATAAAGAGTGTTTAATCAC
*
195310065 TAA-AATGA-TGTTATGAAT-ATGTCC
1 TAATAAAGAGTGTT-T-AATCA----C
195310089 TAATAAAGAGTGTTTAATCAC
1 TAATAAAGAGTGTTTAATCAC
195310110 TAA
1 TAA
195310113 AATGATGCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 18
0.65 0.04 0.32
Matches are distributed among these distances:
19 4 0.11
20 6 0.16
21 10 0.27
24 7 0.19
25 6 0.16
26 4 0.11
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (21 bp):
TAATAAAGAGTGTTTAATCAC
Found at i:195311976 original size:25 final size:24
Alignment explanation
Indices: 195311908--195311977 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 24
195311898 ACTTAGGGAA
*
195311908 ATTTTAAATTTTTTTCTTTTTAGTT
1 ATTTT-AATTTTTTTTTTTTTAGTT
*
195311933 ATTTT-CTTTTCTTTGTTTTTTAG-T
1 ATTTTAATTTT-TTT-TTTTTTAGTT
*
195311957 AGTTTTAATTTTTTTATTTTT
1 A-TTTTAATTTTTTTTTTTTT
195311978 CTTTGCATGC
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
23 4 0.11
24 10 0.27
25 19 0.51
26 4 0.11
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (24 bp):
ATTTTAATTTTTTTTTTTTTAGTT
Found at i:195315005 original size:40 final size:40
Alignment explanation
Indices: 195314939--195315089 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
195314929 AAATTGAATG
* * *
195314939 ATATCCGGGCTAA-ATCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
195314978 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
195315018 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
195315058 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
195315090 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:195315103 original size:40 final size:40
Alignment explanation
Indices: 195314976--195315105 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
195314966 ATGCTGGAAA
* * * *
195314976 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
195315016 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
195315056 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
195315096 TTATATCCGG
1 TTATATCCGG
195315106 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:195322983 original size:40 final size:40
Alignment explanation
Indices: 195322898--195323048 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
195322888 AATTGAATGA
* * *
195322898 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
195322938 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
195322979 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
195323018 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
195323049 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:195323062 original size:40 final size:40
Alignment explanation
Indices: 195322935--195323064 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
195322925 ATGCTGGAAA
* * * *
195322935 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
195322975 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
195323015 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
195323055 TTATATCCGG
1 TTATATCCGG
195323065 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:195324468 original size:19 final size:19
Alignment explanation
Indices: 195324444--195324481 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
195324434 TTAGGACTAG
195324444 GATTAGATTAATTTTCTTT
1 GATTAGATTAATTTTCTTT
195324463 GATTAGATTAATTTTCTTT
1 GATTAGATTAATTTTCTTT
195324482 CGGCTTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.58
Consensus pattern (19 bp):
GATTAGATTAATTTTCTTT
Found at i:195340602 original size:80 final size:80
Alignment explanation
Indices: 195340518--195340666 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
195340508 TATGGTAACC
* * * *
195340518 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
195340582 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
195340598 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
195340663 CCGG
66 CCGG
195340667 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:195340608 original size:40 final size:38
Alignment explanation
Indices: 195340559--195340666 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
195340549 ATCACGATTT
*
195340559 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
195340599 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
195340639 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
195340667 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:195348343 original size:80 final size:80
Alignment explanation
Indices: 195348259--195348407 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
195348249 TATGGTAACC
* * * *
195348259 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
195348323 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
195348339 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
195348404 CCGG
66 CCGG
195348408 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Done.