Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 623 of 770
Found at i:195348349 original size:40 final size:38
Alignment explanation
Indices: 195348300--195348407 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
195348290 ATCACGATTT
*
195348300 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
195348340 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
195348380 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
195348408 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:195354787 original size:40 final size:40
Alignment explanation
Indices: 195354729--195354823 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
195354719 CGGATGTAAC
*
195354729 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
195354769 AACCCGCATGAATTCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
195354809 AACCCGCACGAATGC
1 AACCCGCACGAATGC
195354824 TATGCACATA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:195368837 original size:29 final size:29
Alignment explanation
Indices: 195368805--195368877 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
195368795 CTTCGAGCTC
*
195368805 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
195368834 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
195368863 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
195368878 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:195373721 original size:40 final size:40
Alignment explanation
Indices: 195373664--195373764 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
195373654 TGAATGATAC
* * * * *
195373664 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATGT
1 CCGGGCTAAGACCCGAAGGCATTCATACGAGTTG-TTATAT
* *
195373704 CTGGGCTAAGACCCGAAGGCATTCGTACGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATACGAGTTGTTATAT
195373744 CCGGGCTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
195373765 ATTGTGCAAG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 50 0.96
41 2 0.04
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCATACGAGTTGTTATAT
Found at i:195373786 original size:40 final size:40
Alignment explanation
Indices: 195373706--195373811 Score: 133
Period size: 40 Copynumber: 2.6 Consensus size: 40
195373696 GATTATGTCT
* * *** *
195373706 GGGCTAAGACCCGAAGGC-ATTCGTACGAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCAATT-GTGCAAGTTACCAAATCC
195373746 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCC
1 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCC
*
195373786 GGGTTAAGACCCGAAGGCAATTGTGC
1 GGGCTAAGACCCGAAGGCAATTGTGC
195373812 TTGTGGTTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 55 0.95
41 3 0.05
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCC
Found at i:195375554 original size:27 final size:28
Alignment explanation
Indices: 195375497--195375566 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
195375487 AAACTTGTAC
*
195375497 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
195375525 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
195375552 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
195375567 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:195375577 original size:27 final size:27
Alignment explanation
Indices: 195375497--195375578 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
195375487 AAACTTGTAC
* * *
195375497 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
195375525 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
195375552 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
195375579 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:195383492 original size:27 final size:28
Alignment explanation
Indices: 195383435--195383504 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
195383425 AAACTTGTAC
*
195383435 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
195383463 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
195383490 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
195383505 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:195383515 original size:27 final size:27
Alignment explanation
Indices: 195383435--195383516 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
195383425 AAACTTGTAC
* * *
195383435 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
195383463 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
195383490 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
195383517 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:195387637 original size:29 final size:29
Alignment explanation
Indices: 195387605--195387677 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
195387595 TGAAAAGTAT
* * *
195387605 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
195387634 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
195387663 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
195387678 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:195402052 original size:41 final size:41
Alignment explanation
Indices: 195402007--195402124 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
195401997 TGAAAGATAA
195402007 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
195402048 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
195402078 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
195402119 ATGTAG
1 ATGTAG
195402125 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:195402063 original size:71 final size:71
Alignment explanation
Indices: 195401975--195402138 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
195401965 GAGATGTATC
195401975 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
195402040 AGGACA
66 AGGACA
195402046 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
195402111 AGGACA
66 AGGACA
195402117 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
195402139 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:195404671 original size:46 final size:46
Alignment explanation
Indices: 195404621--195404796 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
195404611 TGGTTGAGCA
195404621 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
195404667 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
195404712 CATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
195404760 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
195404797 GCCGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:195404777 original size:93 final size:93
Alignment explanation
Indices: 195404618--195404789 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
195404608 GGATGGTTGA
* *
195404618 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
195404683 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
195404711 GCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
195404776 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
195404790 CTTATGGGCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:195409872 original size:29 final size:28
Alignment explanation
Indices: 195409839--195409936 Score: 117
Period size: 29 Copynumber: 3.5 Consensus size: 28
195409829 GACGAGAATG
*
195409839 GCACTAAGTGTGCAAGCTGGAAATATATG
1 GCACTAAGTGTGCAAGCT-GAAATATATA
*
195409868 GCACTAAGTGTGCAAGCTCAAATTATATA
1 GCACTAAGTGTGCAAGCTGAAA-TATATA
* * * *
195409897 GCACTATGTGTGCGAGCTG-ATTTTATA
1 GCACTAAGTGTGCAAGCTGAAATATATA
195409924 GCACTAAGTGTGC
1 GCACTAAGTGTGC
195409937 GGATTCACTA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 17 0.28
28 4 0.07
29 39 0.65
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGCTGAAATATATA
Found at i:195416002 original size:46 final size:46
Alignment explanation
Indices: 195415952--195416127 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
195415942 TGGTTGAGCA
195415952 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
195415998 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
195416043 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
195416091 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
195416128 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:195416108 original size:93 final size:93
Alignment explanation
Indices: 195415949--195416120 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
195415939 GGATGGTTGA
* *
195415949 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
195416014 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
195416042 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
195416107 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
195416121 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:195422600 original size:30 final size:29
Alignment explanation
Indices: 195422564--195422623 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 29
195422554 TTCCCGAGCC
195422564 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATT-TGCAAAAGTT
*
195422594 TAGGGGCAAAATGGTAATTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTTGCAAAAGTT
195422623 T
1 T
195422624 GTATTAAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 10 0.36
30 17 0.61
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (29 bp):
TAGGGGCAAAATGGTAATTTGCAAAAGTT
Found at i:195423347 original size:49 final size:49
Alignment explanation
Indices: 195423275--195423459 Score: 268
Period size: 49 Copynumber: 3.8 Consensus size: 49
195423265 TGAGGTCACG
*
195423275 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * *
195423324 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACT--TCGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCG--CA
* *
195423373 CGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
*
195423421 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
195423460 GCTTCGGCTA
Statistics
Matches: 120, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
47 3 0.03
48 39 0.32
49 75 0.62
50 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:195423443 original size:97 final size:98
Alignment explanation
Indices: 195423276--195423465 Score: 355
Period size: 97 Copynumber: 1.9 Consensus size: 98
195423266 GAGGTCACGT
195423276 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
*
195423341 AGGCTACTATGCGTACCTGATAACTTCGATCAC
66 AGGCTACTATGCGTACCAGATAACTTCGATCAC
195423374 GTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GATAATTGGTCGCATGTGTAGTACTAAGTGC
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
*
195423438 AGGCTACTATGCGTACCAGATAGCTTCG
66 AGGCTACTATGCGTACCAGATAACTTCG
195423466 GCTACAAGTG
Statistics
Matches: 90, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
97 57 0.63
98 33 0.37
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (98 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
AGGCTACTATGCGTACCAGATAACTTCGATCAC
Found at i:195425542 original size:25 final size:26
Alignment explanation
Indices: 195425493--195425543 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
195425483 AACATTCCTA
*
195425493 TATATAAAATTTTAATAAATGAAATT
1 TATATAAAATTTTAAAAAATGAAATT
195425519 TATAT-AAATTATTAAAAAAT-AAATT
1 TATATAAAATT-TTAAAAAATGAAATT
195425544 AAAATAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (26 bp):
TATATAAAATTTTAAAAAATGAAATT
Found at i:195425550 original size:25 final size:25
Alignment explanation
Indices: 195425499--195425550 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
195425489 CCTATATATA
* * *
195425499 AAATTTTAATAAATGAAATTTATAT
1 AAATTTTAAAAAATGAAATTAAAAT
195425524 AAATTATTAAAAAAT-AAATTAAAAT
1 AAATT-TTAAAAAATGAAATTAAAAT
195425549 AA
1 AA
195425551 TATAAATGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (25 bp):
AAATTTTAAAAAATGAAATTAAAAT
Found at i:195430937 original size:20 final size:20
Alignment explanation
Indices: 195430912--195430954 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
195430902 ATTTTGATAA
195430912 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
195430932 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
195430952 ACA
1 ACA
195430955 CGAGATGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:195430962 original size:20 final size:20
Alignment explanation
Indices: 195430919--195430962 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
195430909 TAAACATGAT
* *
195430919 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACACGAG
195430939 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
195430959 ATGT
1 ATGT
195430963 TCATAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:195431065 original size:24 final size:24
Alignment explanation
Indices: 195431009--195431198 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
195430999 GAGGAAGTGA
195431009 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
195431032 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
195431056 AAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATC
195431080 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
195431104 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
195431127 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
195431151 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
195431175 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
195431199 ATGATAAAGC
Statistics
Matches: 153, Mismatches: 10, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
23 44 0.29
24 98 0.64
25 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:195431132 original size:71 final size:71
Alignment explanation
Indices: 195431008--195431198 Score: 278
Period size: 71 Copynumber: 2.7 Consensus size: 71
195430998 GGAGGAAGTG
*
195431008 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
195431073 AATTAT
66 AATTAT
* *
195431079 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCC
*
195431143 CAGTTAT
65 CAATTAT
* *
195431150 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
195431199 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
71 75 0.69
72 34 0.31
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (71 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
AATTAT
Found at i:195431155 original size:47 final size:47
Alignment explanation
Indices: 195431008--195431199 Score: 287
Period size: 47 Copynumber: 4.0 Consensus size: 47
195430998 GGAGGAAGTG
195431008 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
195431055 CAAAAGGGCTTATGCCCCAATTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
*
195431103 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
195431150 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTATGCC-CCAGTTAT
195431199 A
1 A
195431200 TGATAAAGCA
Statistics
Matches: 133, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
47 67 0.50
48 54 0.41
49 12 0.09
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:195431430 original size:31 final size:31
Alignment explanation
Indices: 195431392--195431452 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
195431382 CGTTTACAGT
*
195431392 AAAGGCTTCGTCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
195431423 AAAGGCTTCGGCCCAGTATTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
195431453 TAATATGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:195438369 original size:25 final size:25
Alignment explanation
Indices: 195438311--195438425 Score: 80
Period size: 25 Copynumber: 4.6 Consensus size: 25
195438301 ACAAACCACA
**
195438311 CTCAGCTCGTATGAGCTTACCAATT
1 CTCAGCTCGTATGAGCTTACTGATT
*
195438336 -TGCAACTCGTGA-GAGCTTACTGATT
1 CT-CAGCTCGT-ATGAGCTTACTGATT
* *
195438361 CTCAGCTCGTATAAGCTTATTGATT
1 CTCAGCTCGTATGAGCTTACTGATT
*
195438386 -TGCAGCT-G-ATGAGAGCATACTGATT
1 CT-CAGCTCGTAT--GAGCTTACTGATT
195438411 CAT-AGCTCGTATGAG
1 C-TCAGCTCGTATGAG
195438426 TGTACAGGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 22
0.69 0.09 0.22
Matches are distributed among these distances:
23 2 0.03
24 4 0.06
25 58 0.83
26 3 0.04
27 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (25 bp):
CTCAGCTCGTATGAGCTTACTGATT
Found at i:195438387 original size:50 final size:50
Alignment explanation
Indices: 195438311--195438422 Score: 138
Period size: 50 Copynumber: 2.2 Consensus size: 50
195438301 ACAAACCACA
* *
195438311 CTCAGCTCGTATGAGCTTACCAATTTGCAACTCG-TGAGAGCTTACTGATT
1 CTCAGCTCGTATAAGCTTACCAATTTGCAACT-GATGAGAGCATACTGATT
*** *
195438361 CTCAGCTCGTATAAGCTTATTGATTTGCAGCTGATGAGAGCATACTGATT
1 CTCAGCTCGTATAAGCTTACCAATTTGCAACTGATGAGAGCATACTGATT
195438411 CAT-AGCTCGTAT
1 C-TCAGCTCGTAT
195438423 GAGTGTACAG
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
49 1 0.02
50 52 0.96
51 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (50 bp):
CTCAGCTCGTATAAGCTTACCAATTTGCAACTGATGAGAGCATACTGATT
Found at i:195444758 original size:43 final size:42
Alignment explanation
Indices: 195444711--195444829 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 42
195444701 AATGCCAACA
* *
195444711 TCCTAGACGTGGTCTTACATGTAATCACATATCGATG-CCACTG
1 TCCTAGACATGGTCTTACACG-AATCACATATCGATGTCCA-TG
* * *
195444754 TCCTAGACAAGGTCATACACGAATCACATATACGATGTCGATG
1 TCCTAGACATGGTCTTACACGAATCACATAT-CGATGTCCATG
195444797 TCCTAGACATGGTCTTACACGCAATCACATATC
1 TCCTAGACATGGTCTTACACG-AATCACATATC
195444830 ATAAATCCTA
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
42 10 0.15
43 44 0.67
44 12 0.18
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
TCCTAGACATGGTCTTACACGAATCACATATCGATGTCCATG
Found at i:195445730 original size:17 final size:18
Alignment explanation
Indices: 195445708--195445743 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
195445698 TTTAATGTTT
195445708 TATTATATTA-TAAATTA
1 TATTATATTATTAAATTA
*
195445725 TATTATTTTATTAAATTA
1 TATTATATTATTAAATTA
195445743 T
1 T
195445744 CTAAATAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTATATTATTAAATTA
Found at i:195447314 original size:25 final size:25
Alignment explanation
Indices: 195447286--195447333 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
195447276 CATTAAACAC
* *
195447286 TTAGGGGTATTTCGGTCATTTTTTT
1 TTAGGGGCATTTCGGTAATTTTTTT
195447311 TTAGGGGCATTTCGGTAATTTTT
1 TTAGGGGCATTTCGGTAATTTTT
195447334 CCTTTTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.15, C:0.08, G:0.25, T:0.52
Consensus pattern (25 bp):
TTAGGGGCATTTCGGTAATTTTTTT
Found at i:195447678 original size:29 final size:29
Alignment explanation
Indices: 195447620--195447706 Score: 140
Period size: 29 Copynumber: 3.0 Consensus size: 29
195447610 CATACTGTAG
*
195447620 ATGGCCCACTAGGCCC-AATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
195447648 ATGGCCCATTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
* *
195447677 ATGGCCCATCAGGCCCAATTCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
195447706 A
1 A
195447707 GTCATCCTCA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 15 0.27
29 40 0.73
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTTAT
Found at i:195458644 original size:29 final size:28
Alignment explanation
Indices: 195458612--195458713 Score: 114
Period size: 29 Copynumber: 3.5 Consensus size: 28
195458602 GTGACGAGAT
* *
195458612 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
195458641 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
195458670 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
195458699 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
195458714 TTTATTGAGT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:195465519 original size:29 final size:29
Alignment explanation
Indices: 195465486--195465559 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
195465476 GTGACGAGAT
195465486 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
195465515 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
195465544 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
195465560 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:195465575 original size:29 final size:29
Alignment explanation
Indices: 195465543--195465618 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
195465533 CTGGAAATAT
* *
195465543 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
195465572 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
195465601 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
195465619 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:195465586 original size:58 final size:58
Alignment explanation
Indices: 195465486--195465618 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
195465476 GTGACGAGAT
* * * * * *
195465486 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
195465544 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
195465602 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
195465619 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:195472208 original size:12 final size:12
Alignment explanation
Indices: 195472191--195472215 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
195472181 TTATGTAGAA
195472191 AAAAAAAAAATG
1 AAAAAAAAAATG
195472203 AAAAAAAAAATG
1 AAAAAAAAAATG
195472215 A
1 A
195472216 GCATGGATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAAAAAAAATG
Found at i:195473392 original size:29 final size:29
Alignment explanation
Indices: 195473359--195473432 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
195473349 GTGACGAGAT
195473359 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
195473388 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
195473417 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
195473433 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:195473448 original size:29 final size:28
Alignment explanation
Indices: 195473416--195473490 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
195473406 CTGGAAATAT
* *
195473416 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
195473445 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
195473473 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
195473491 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:195473459 original size:58 final size:57
Alignment explanation
Indices: 195473359--195473490 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
195473349 GTGACGAGAT
* * * * * *
195473359 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
195473417 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
195473474 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
195473491 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:195476392 original size:29 final size:28
Alignment explanation
Indices: 195476358--195476460 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
195476348 TACTCAATCA
*
195476358 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
195476387 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
195476416 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
195476445 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
195476461 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:195482793 original size:27 final size:27
Alignment explanation
Indices: 195482763--195482949 Score: 214
Period size: 27 Copynumber: 6.9 Consensus size: 27
195482753 TGCCCTCGAC
*
195482763 TTGTAAAATCACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
195482790 TTGTAAAATTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
** *
195482817 TTACAAAATTACCAAAATACCTCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
195482844 TTGTAAAATTACTAAAATACCCTTTGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
195482871 TTATAAAATTACCAAAATACCCATGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
195482898 TTGCAAAATTACTAAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTGGT
** *
195482924 AGGGTAAAATTACCGAAATACCCCTG
1 -TTGTAAAATTACCAAAATACCCCTG
195482950 TAGGGTAGAA
Statistics
Matches: 131, Mismatches: 27, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
26 2 0.02
27 129 0.98
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGGT
Found at i:195482825 original size:54 final size:54
Alignment explanation
Indices: 195482767--195482919 Score: 252
Period size: 54 Copynumber: 2.8 Consensus size: 54
195482757 CTCGACTTGT
*
195482767 AAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTAC
* * *
195482821 AAAATTACCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTAT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTAC
* *
195482875 AAAATTACCAAAATACCCATGGTTTGCAAAATTACTAAAATACCC
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
195482920 CTGTAGGGTA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTAC
Found at i:195482975 original size:27 final size:27
Alignment explanation
Indices: 195482902--195482964 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
195482892 CATGGTTTGC
**
195482902 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
195482929 AAAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
*
195482956 AGAATTACC
1 AAAATTACC
195482965 ATTTTGCCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.24
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Found at i:195483616 original size:28 final size:28
Alignment explanation
Indices: 195483584--195483642 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
195483574 GCGTAGATCA
195483584 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
195483612 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
195483640 CGA
1 CGA
195483643 TATACCTAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:195487467 original size:29 final size:28
Alignment explanation
Indices: 195487433--195487535 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
195487423 TACTCAATCA
*
195487433 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
195487462 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
195487491 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
195487520 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
195487536 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:195495455 original size:29 final size:28
Alignment explanation
Indices: 195495422--195495525 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 28
195495412 TGTGTAGAGT
195495422 TCGCACACTTAGTGCCATATGATTCAAGC
1 TCGCACACTTAGTGCCATAT-ATTCAAGC
* * * *
195495451 CCGCACACATAGTGCCATATAGTCCAAAC
1 TCGCACACTTAGTGCCATATA-TTCAAGC
* *
195495480 TCGCACACTTAGTGCCGTACATTACAAGC
1 TCGCACACTTAGTGCCATATATT-CAAGC
*
195495509 TCGCACACTCAGTGCCA
1 TCGCACACTTAGTGCCA
195495526 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATATATTCAAGC
Found at i:195505108 original size:39 final size:39
Alignment explanation
Indices: 195505078--195505162 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 39
195505068 CGGAATACAA
* **
195505078 CCGGATATAACCACGTGCACGAATGCCTTCGGTCTTAGC
1 CCGGATAGAACCACGTGCACGAATGCCTTCGGTAATAGC
* * **
195505117 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCACGTGCACGAATGCCTTC-GGTAATAGC
195505157 CCGGAT
1 CCGGAT
195505163 GTAGCCGCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 27 0.64
40 15 0.36
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CCGGATAGAACCACGTGCACGAATGCCTTCGGTAATAGC
Found at i:195505184 original size:40 final size:41
Alignment explanation
Indices: 195505094--195505202 Score: 138
Period size: 40 Copynumber: 2.7 Consensus size: 41
195505084 ATAACCACGT
*
195505094 GCACGAATGCCTTC-GGTCTTAGCCCGGA-TAGAACGACTT
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
*
195505133 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-CCG-CTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTA
*
195505173 GCAC-AATTGCCTTCGGGTCTTAACCCGGAT
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT
195505203 ATAATTTCCA
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
39 16 0.25
40 42 0.67
41 2 0.03
42 3 0.05
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (41 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
Found at i:195509467 original size:47 final size:46
Alignment explanation
Indices: 195509407--195509537 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 46
195509397 GTGCAAATAA
* * *
195509407 TACCTTGATTTGGCAATGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTATGGG-CATGGTATAGGTATTTTGAGAGAAGT
* * * *
195509454 TACCTTGATTTGGCTATGGAGCATGGTATAGGTACTCTGGGATAAGT
1 TACCTTGATTTGGCTATGG-GCATGGTATAGGTATTTTGAGAGAAGT
*
195509501 TACCTTGATTTGGCTACGGGTCATGGTATAGGTATTT
1 TACCTTGATTTGGCTATGGG-CATGGTATAGGTATTT
195509538 ATCGATTGTG
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
46 1 0.01
47 70 0.97
48 1 0.01
ACGTcount: A:0.23, C:0.12, G:0.29, T:0.36
Consensus pattern (46 bp):
TACCTTGATTTGGCTATGGGCATGGTATAGGTATTTTGAGAGAAGT
Found at i:195513851 original size:22 final size:22
Alignment explanation
Indices: 195513826--195513867 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
195513816 ACATAAGCAT
195513826 TCAATTATATTAGCACAATAAA
1 TCAATTATATTAGCACAATAAA
* *
195513848 TCAATTATATTGGCATAATA
1 TCAATTATATTAGCACAATA
195513868 CATCTATGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (22 bp):
TCAATTATATTAGCACAATAAA
Found at i:195515402 original size:47 final size:47
Alignment explanation
Indices: 195515335--195515648 Score: 200
Period size: 47 Copynumber: 6.6 Consensus size: 47
195515325 GACGAGGGCT
*
195515335 AGTGTAAGACATGT-TCGGGACATGCATCAGCCAC-ATTATGATCA-CC
1 AGTGTAAGACATGTCT-GGGACATGCATCAGCCACTATAATGAT-AGCC
* *
195515381 AGTGTAAGACCATGTCTGGGACATGGCATCAG-C-GTAGAGATGAGT-GCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACTATA-ATGA-TAGCC
* * * ** * * *
195515429 AGCGTAAGACATGTCTGGAACATGCCTTGGCCTCAATGATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACTATAATGATAGCC
* * * * *
195515476 AGTGTAAGACGTGTCTGGGACATGCATC-G--ACTA-AGTGCTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACTATAATGAT-AGCC
* * * *
195515520 AGTGTAAGACATGTTTGGGACATGTATCAG-CACTTATATATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-TATA-ATGATAGCC
* * * * *
195515568 AGTGTAAGACCATGTCTGGGATATAGAATCGGCCTCGATAATGATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACTATAATGATAGCC
*
195515617 AGTGTAAGACCATGTTTGGGACATGGCATCAG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAG
195515649 TAACTTAGCC
Statistics
Matches: 205, Mismatches: 44, Indels: 35
0.72 0.15 0.12
Matches are distributed among these distances:
43 3 0.01
44 29 0.14
45 1 0.00
46 17 0.08
47 60 0.29
48 36 0.18
49 49 0.24
50 8 0.04
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACTATAATGATAGCC
Found at i:195515452 original size:94 final size:93
Alignment explanation
Indices: 195515287--195515588 Score: 296
Period size: 94 Copynumber: 3.2 Consensus size: 93
195515277 TGTGAGAGCT
* * * *
195515287 AGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGACATGTTCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TAGAGATGAGTGCTAGTGTAAGACATGTT-G
195515352 GGACATGCATCAGCCAC-ATTATGATCA-CC
64 GGACATGCATCAGCCACTATTATGAT-AGCC
* *
195515381 AGTGTAAGACCATGTCTGGGACATGGCATC-AGCGTAGAGATGAGTGCCAGCGTAAGACATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TAGAGATGAGTGCTAGTGTAAGACATGT-T
* * ** * * *
195515445 GGAACATGCCTTGGCCTCAATGATGATAGCC
63 GGGACATGCATCAGCCACTATTATGATAGCC
* *
195515476 AGTGTAAGA-CGTGTCTGGGACAT-GCATCGACTA-AG-TGCTGTGCTAGTGTAAGACATGTTTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTAGAGATG-AGTGCTAGTGTAAGACATG-TTG
* * *
195515537 GGACATGTATCAG-CACTTATATATGAGAGCT
64 GGACATGCATCAGCCAC-TAT-TATGATAGCC
195515568 AGTGTAAGACCATGTCTGGGA
1 AGTGTAAGACCATGTCTGGGA
195515589 TATAGAATCG
Statistics
Matches: 170, Mismatches: 28, Indels: 21
0.78 0.13 0.10
Matches are distributed among these distances:
90 4 0.02
91 30 0.18
92 19 0.11
93 17 0.10
94 81 0.48
95 19 0.11
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (93 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTAGAGATGAGTGCTAGTGTAAGACATGTTGGG
ACATGCATCAGCCACTATTATGATAGCC
Found at i:195515573 original size:48 final size:48
Alignment explanation
Indices: 195515517--195515641 Score: 146
Period size: 49 Copynumber: 2.6 Consensus size: 48
195515507 TAAGTGCTGT
* *
195515517 GCTAGTGTAAGA-CATGTTTGGGACATGTATCAGCACT-TATATATGAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGAATCAGC-CTCGATA-ATGAGA
* * * *
195515565 GCTAGTGTAAGACCATGTCTGGGATATAGAATCGGCCTCGATAATGATA
1 GCTAGTGTAAGACCATGTTTGGGACAT-GAATCAGCCTCGATAATGAGA
*
195515614 GCCAGTGTAAGACCATGTTTGGGACATG
1 GCTAGTGTAAGACCATGTTTGGGACATG
195515642 GCATCAGTAA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
48 13 0.20
49 43 0.66
50 9 0.14
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTTTGGGACATGAATCAGCCTCGATAATGAGA
Found at i:195522857 original size:47 final size:45
Alignment explanation
Indices: 195522780--195523146 Score: 211
Period size: 47 Copynumber: 7.8 Consensus size: 45
195522770 GGGTTATGTA
* * * *
195522780 AGAGCTAATGTAAGACCATGTTTAGGACATGGCATCGGCATTAAGACG
1 AGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTAAGATG
* * * **
195522828 AGGGCTAGTGTAAGAAATGTCTGGGACATGCATCAGCTATATTATG
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCT-TAAGATG
** * * * *
195522874 ATCGCTAGTGTAAGACATGTTTGTGACATGGCATTGGCGTAGAGATG
1 AGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCTTA-AGATG
* * * * * *
195522921 AGTGCCAGTGTAAGACATGTTTGGGACATGCCTCGGCCTCGATGATG
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CT-TAAGATG
* * * * * *
195522968 ATAGCCAGCGTAAGACGTTTCTGGGACATGCATCAGC-TAAGCACT-
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTAAG-A-TG
* * * *
195523013 -GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACTTATATACG
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCATC-G-GCTTA-AGATG
* *
195523060 AGAGCTACTGTAAGACCATGTCTGGGACATGGCATCGGC-CACGATGATG
1 AGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTA--A-GATG
* *
195523109 ATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
195523147 TAACTTAGCA
Statistics
Matches: 244, Mismatches: 58, Indels: 33
0.73 0.17 0.10
Matches are distributed among these distances:
44 29 0.12
45 2 0.01
46 45 0.18
47 82 0.34
48 29 0.12
49 52 0.21
50 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
AGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTAAGATG
Found at i:195526379 original size:40 final size:39
Alignment explanation
Indices: 195526214--195526381 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 39
195526204 CAATTGAATG
* * **
195526214 ATATCCGGGCTAAGTCCCGAAGACATTTATGC--TGGAAACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG--A-T
* *
195526254 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGGAT
* *
195526294 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGGAT
* *
195526334 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGGAT
195526374 ATATCCGG
1 ATATCCGG
195526382 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
39 4 0.04
40 97 0.91
41 3 0.03
43 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGGAT
Found at i:195534139 original size:40 final size:40
Alignment explanation
Indices: 195534073--195534239 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
195534063 AAATTGAATG
* * *
195534073 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
195534112 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
195534152 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
195534192 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
195534232 ATATCCGG
1 ATATCCGG
195534240 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:195542122 original size:40 final size:40
Alignment explanation
Indices: 195542056--195542222 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
195542046 AAATTGAATG
* * *
195542056 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
195542095 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
195542135 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
195542175 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
195542215 ATATCCGG
1 ATATCCGG
195542223 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:195548615 original size:33 final size:34
Alignment explanation
Indices: 195548570--195548643 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
195548560 GTGACAGTCT
*
195548570 AGTATCAATGT-GGCCTTAGCCTATTACAATAAC
1 AGTATCAATGTGGGCCTTAGCCCATTACAATAAC
* *
195548603 AGTATCAGTGTGGGCCTTAGCCCATTACAATAAT
1 AGTATCAATGTGGGCCTTAGCCCATTACAATAAC
195548637 AGTATCA
1 AGTATCA
195548644 TAAGTGCAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 10 0.27
34 27 0.73
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (34 bp):
AGTATCAATGTGGGCCTTAGCCCATTACAATAAC
Found at i:195551496 original size:27 final size:26
Alignment explanation
Indices: 195551456--195551567 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
195551446 CAGCATGGCT
* *
195551456 ACCAGAACAGATATTGTGACAGAGTC
1 ACCAGAACAGATATTGTGGCAGAGCC
*
195551482 ACCAGATATAGATATTGTGGCAGAGCC
1 ACCAGA-ACAGATATTGTGGCAGAGCC
195551509 ACCAGAACAGATATTTGTGGC-GTAGCC
1 ACCAGAACAGATA-TTGTGGCAG-AGCC
* *
195551536 ACCAGAAATAGATATTTGTGGCATAGCC
1 ACCAG-AACAGATA-TTGTGGCAGAGCC
195551564 ACCA
1 ACCA
195551568 AAACGCTTCC
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 13 0.17
27 39 0.52
28 23 0.31
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGGCAGAGCC
Found at i:195551547 original size:54 final size:54
Alignment explanation
Indices: 195551456--195551567 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
195551446 CAGCATGGCT
* *
195551456 ACCAGAACAGATATTGTGACAGAGTCACCAGATATAGATA-TTGTGGCAGAGCC
1 ACCAGAACAGATATTGTGACAGAGCCACCAGAAATAGATATTTGTGGCAGAGCC
* *
195551509 ACCAGAACAGATATTTGTGGC-GTAGCCACCAGAAATAGATATTTGTGGCATAGCC
1 ACCAGAACAGATA-TTGTGACAG-AGCCACCAGAAATAGATATTTGTGGCAGAGCC
195551564 ACCA
1 ACCA
195551568 AAACGCTTCC
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
53 14 0.27
54 22 0.42
55 16 0.31
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (54 bp):
ACCAGAACAGATATTGTGACAGAGCCACCAGAAATAGATATTTGTGGCAGAGCC
Found at i:195551556 original size:28 final size:28
Alignment explanation
Indices: 195551481--195551567 Score: 117
Period size: 28 Copynumber: 3.2 Consensus size: 28
195551471 GTGACAGAGT
*
195551481 CACCAGATATAGATA-TTGTGGCAG-AGC
1 CACCAGAAATAGATATTTGTGGC-GTAGC
*
195551508 CACCAG-AACAGATATTTGTGGCGTAGC
1 CACCAGAAATAGATATTTGTGGCGTAGC
*
195551535 CACCAGAAATAGATATTTGTGGCATAGC
1 CACCAGAAATAGATATTTGTGGCGTAGC
195551563 CACCA
1 CACCA
195551568 AAACGCTTCC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
26 7 0.13
27 22 0.42
28 24 0.45
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (28 bp):
CACCAGAAATAGATATTTGTGGCGTAGC
Found at i:195555853 original size:40 final size:39
Alignment explanation
Indices: 195555689--195555871 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
195555679 AAATTGAATG
* *
195555689 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
195555728 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
195555768 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
195555808 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
195555847 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
195555872 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 15 0.13
40 92 0.81
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:195555896 original size:80 final size:81
Alignment explanation
Indices: 195555728--195555916 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
195555718 GCTGGAAATT
* * * *
195555728 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
195555793 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
195555809 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
195555872 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
195555888 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
195555917 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:195563799 original size:39 final size:40
Alignment explanation
Indices: 195563714--195563862 Score: 123
Period size: 39 Copynumber: 3.8 Consensus size: 40
195563704 AATTGAATGA
* * **
195563714 TATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
195563753 TAACCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
195563793 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
195563832 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
195563863 AAATCGTGAT
Statistics
Matches: 88, Mismatches: 12, Indels: 19
0.74 0.10 0.16
Matches are distributed among these distances:
38 1 0.01
39 44 0.50
40 41 0.47
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:195563876 original size:40 final size:39
Alignment explanation
Indices: 195563713--195563894 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
195563703 AAATTGAATG
* *
195563713 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
195563752 ATAACCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
195563791 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
195563831 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
195563870 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
195563895 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 25, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
36 4 0.04
37 2 0.02
38 2 0.02
39 33 0.30
40 70 0.63
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:195571615 original size:40 final size:40
Alignment explanation
Indices: 195571556--195571763 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
195571546 CAATTGAATG
* * * *
195571556 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
195571596 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
195571636 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
195571676 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
195571716 GTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
195571756 ATATCCGG
1 ATATCCGG
195571764 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:195571694 original size:80 final size:80
Alignment explanation
Indices: 195571558--195571763 Score: 243
Period size: 80 Copynumber: 2.6 Consensus size: 80
195571548 ATTGAATGAT
* * ** * * *
195571558 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
195571623 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
195571638 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* **
195571703 TGTGCAAGTCGTTGT
66 TGTGCAAGTCGCTAC
* *
195571718 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
195571764 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 106 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:195577464 original size:93 final size:93
Alignment explanation
Indices: 195577305--195577476 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
195577295 CGCCCATAAG
* * * * *
195577305 CGAACTCGTACTCAACTCAATGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
195577370 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
195577398 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
195577463 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
195577477 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:195577466 original size:46 final size:46
Alignment explanation
Indices: 195577298--195577473 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
195577288 TGTAACCCGC
* * * * * *
195577298 CCATAAGCGAACTCGTACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
195577344 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
195577394 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
195577437 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
195577474 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:195577492 original size:46 final size:45
Alignment explanation
Indices: 195577349--195577492 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 45
195577339 CGCATCCATG
195577349 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * *
195577396 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
195577442 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
195577488 AGTGA
1 AGTGA
195577493 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 33 0.42
47 31 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:195583742 original size:48 final size:48
Alignment explanation
Indices: 195583690--195583910 Score: 298
Period size: 48 Copynumber: 4.6 Consensus size: 48
195583680 TATCGGTGCC
* * * * **
195583690 GATGCCATGTCCTAGACATAGTCTTACACTAGCACACATGTCATTACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACT
* *
195583738 GATGCCATGTCCCAGACATGGTCTTACATTGGCACACATATCAACACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACT
* * * * *
195583786 AATGCCATGTCCCAGACATGGTCTTATATTGGCATACATATCAACGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACT
* * *
195583834 AATGCCATGTCCTAGACATGGTCTTACACTGGCACATATATCAACACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACT
195583882 GATGCCATGTCCCAGACATGGTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
195583911 AGGCTCTCAT
Statistics
Matches: 152, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 152 1.00
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACACT
Found at i:195584113 original size:20 final size:20
Alignment explanation
Indices: 195584088--195584125 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
195584078 GTTTATTTGC
*
195584088 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
195584108 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
195584126 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:195585782 original size:28 final size:28
Alignment explanation
Indices: 195585750--195585818 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
195585740 GCGTAGATCA
195585750 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
195585778 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
195585806 CGATA-TACCCCTA
1 CGAAATTACCCCTA
195585819 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:195592117 original size:20 final size:20
Alignment explanation
Indices: 195592092--195592129 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
195592082 GTTTATTCGC
*
195592092 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
195592112 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
195592130 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:195593790 original size:28 final size:28
Alignment explanation
Indices: 195593758--195593826 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
195593748 GCGTAGATCA
195593758 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
195593786 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
195593814 CGATA-TACCCCTA
1 CGAAATTACCCCTA
195593827 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:195597513 original size:43 final size:43
Alignment explanation
Indices: 195597447--195597647 Score: 244
Period size: 43 Copynumber: 4.7 Consensus size: 43
195597437 CATGTGTGTG
* ** *
195597447 CGTGTAAGACCATGTCTCAGACGTTGGCATCGATATGTCATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
*
195597490 CGTGTAAGACCACGTCTGGGACGTTGGAATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
* * *
195597533 TGTGTAAGACCACGTCTGGGATGTTGGCATCGACATGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
* * * *
195597576 CATGTAAGACCATGTCTAGGA--TAGTGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTG-GCATCGATATGTGATTA
* * *
195597618 CATGTAAGACCACATCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
195597648 TGTATGATAT
Statistics
Matches: 136, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.01
42 34 0.25
43 98 0.72
44 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
Found at i:195605987 original size:48 final size:48
Alignment explanation
Indices: 195605931--195606053 Score: 165
Period size: 48 Copynumber: 2.6 Consensus size: 48
195605921 GTACGAAAAG
* *
195605931 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCCGGAA
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCCCCGAAA
* * *
195605979 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCTGAAA
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCCCCGAAA
* * * *
195606027 TACCAATACAATGGCTCGAAGCAAAAT
1 TACCTATACCATGGCCCGAAGCCAAAT
195606054 ATAGCTATAA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.20
Consensus pattern (48 bp):
TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTCATCCCCGAAA
Found at i:195609513 original size:44 final size:42
Alignment explanation
Indices: 195609456--195609570 Score: 144
Period size: 44 Copynumber: 2.7 Consensus size: 42
195609446 TTTAGATATG
* *
195609456 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCG-AAT
1 TGATTTTGTGTAAGACCACGTCTGGAACATTGGCATCGTAAT
* *
195609497 TGAGTTTTATGTGTAAGACCATGTCTGGAACATTGGCATCGTATT
1 TGA--TTT-TGTGTAAGACCACGTCTGGAACATTGGCATCGTAAT
195609542 TGATTTTGTGTAAGACC-CTGTCTGGAACA
1 TGATTTTGTGTAAGACCAC-GTCTGGAACA
195609571 GTGTAATGCT
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
41 3 0.05
42 21 0.33
43 6 0.09
44 29 0.45
45 5 0.08
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
TGATTTTGTGTAAGACCACGTCTGGAACATTGGCATCGTAAT
Found at i:195611688 original size:40 final size:40
Alignment explanation
Indices: 195611561--195611690 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
195611551 ATGCTGGAAA
* *
195611561 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
195611601 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
195611641 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
195611681 TTATATCCGG
1 TTATATCCGG
195611691 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:195618893 original size:40 final size:40
Alignment explanation
Indices: 195618766--195618895 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
195618756 TTGCTGGAAA
* * *
195618766 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
195618806 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
195618846 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
195618886 TTATATCCGG
1 TTATATCCGG
195618896 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:195621619 original size:92 final size:92
Alignment explanation
Indices: 195621508--195621678 Score: 306
Period size: 92 Copynumber: 1.9 Consensus size: 92
195621498 CGCCCATAAG
* *
195621508 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
195621573 ACGAGCTCGGATGCCTAGTTACATTCA
66 ACGAGCTCGGATGCCTAGTTACATTCA
*
195621600 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
195621665 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
195621679 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTCA
Found at i:195621675 original size:46 final size:46
Alignment explanation
Indices: 195621501--195621675 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
195621491 TGTAACCCGC
* *
195621501 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
195621547 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* * *
195621593 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
195621639 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
195621676 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 97 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:195621694 original size:46 final size:46
Alignment explanation
Indices: 195621509--195621694 Score: 136
Period size: 46 Copynumber: 4.0 Consensus size: 46
195621499 GCCCATAAGC
** * *
195621509 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCC-T-AGT
* *
195621555 GAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATTC-A-C
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATCCTAGT
* * * * *
195621601 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGCTCAACCATCCTAGT
*
195621647 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGT
195621693 GA
1 GA
195621695 CATGTCACTT
Statistics
Matches: 113, Mismatches: 13, Indels: 28
0.73 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 92 0.81
47 1 0.01
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCTAGT
Found at i:195629166 original size:46 final size:43
Alignment explanation
Indices: 195629027--195629159 Score: 126
Period size: 46 Copynumber: 2.9 Consensus size: 43
195629017 GCCCATAAGC
* *
195629027 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TCAGT
* * *
195629073 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCAGT
195629119 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATC
195629160 CTAGTGACAT
Statistics
Matches: 73, Mismatches: 9, Indels: 12
0.78 0.10 0.13
Matches are distributed among these distances:
44 9 0.12
45 2 0.03
46 57 0.78
48 4 0.05
49 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (43 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCAGT
Found at i:195632339 original size:26 final size:26
Alignment explanation
Indices: 195632309--195632412 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
195632299 ATGCCCATTC
*
195632309 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
195632335 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* * *
195632361 AGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
195632387 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
195632413 ATTTGTACCA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:195632382 original size:52 final size:52
Alignment explanation
Indices: 195632310--195632413 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
195632300 TGCCCATTCT
195632310 GGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCAA
1 GGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCAA
* *
195632362 GGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCAA
1 GGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCAA
195632414 TTTGTACCAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.31
Consensus pattern (52 bp):
GGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCAA
Found at i:195637167 original size:46 final size:46
Alignment explanation
Indices: 195637116--195637297 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
195637106 AGTTAAATAT
195637116 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
195637162 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
195637208 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
195637254 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
195637298 AGATGTATAT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:195637355 original size:47 final size:47
Alignment explanation
Indices: 195637301--195637411 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
195637291 ATGTATGAGA
* * *
195637301 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
195637348 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
195637395 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
195637412 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:195640078 original size:40 final size:40
Alignment explanation
Indices: 195639971--195640233 Score: 429
Period size: 40 Copynumber: 6.6 Consensus size: 40
195639961 CTCGACGATG
*
195639971 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
195640011 ATCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
195640050 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* **
195640090 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGACGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
195640130 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
195640170 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
* *
195640210 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTTCCGAAGAGCA
195640234 ATCATGCTGG
Statistics
Matches: 212, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 38 0.18
40 174 0.82
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:195643721 original size:46 final size:46
Alignment explanation
Indices: 195643670--195643851 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
195643660 AGTTAAATAT
195643670 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
195643716 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
*
195643762 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
* *
195643808 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
195643852 AGATGTATAT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
Found at i:195643909 original size:47 final size:47
Alignment explanation
Indices: 195643855--195643965 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
195643845 ATGTATGAGA
* * *
195643855 TGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
195643902 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
195643949 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
195643966 TCCCGAGGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:195658948 original size:28 final size:27
Alignment explanation
Indices: 195658885--195658954 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
195658875 ATAGTGAGTC
195658885 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
195658912 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
195658940 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
195658955 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:195661446 original size:29 final size:29
Alignment explanation
Indices: 195661384--195661486 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
195661374 GTGACGAGAT
* * *
195661384 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
195661413 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
195661442 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
195661471 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
195661487 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:195674027 original size:40 final size:40
Alignment explanation
Indices: 195673925--195674108 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
195673915 AAATTGAATG
* * * * * *
195673925 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
195673965 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
195674005 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
195674045 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
195674085 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
195674109 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:195674133 original size:80 final size:80
Alignment explanation
Indices: 195673965--195674153 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
195673955 GCTGGAAATT
* * *
195673965 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
195674030 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
195674045 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
195674108 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
195674125 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
195674154 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:195676007 original size:40 final size:40
Alignment explanation
Indices: 195675839--195675988 Score: 246
Period size: 40 Copynumber: 3.8 Consensus size: 40
195675829 ATTGAATGAT
195675839 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAA
195675879 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAA
* * * * **
195675919 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAA
195675959 ATCCGGGCTAAGACCCGAAGGCATTCGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGC
195675989 ATGTGGTTAA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:195692946 original size:21 final size:22
Alignment explanation
Indices: 195692920--195692964 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
195692910 CTTCTCAAGG
* *
195692920 TTTGGATCGA-AGGCTTGGATC
1 TTTGGAGCGACAGACTTGGATC
195692941 TTTGGAGCGATCAGACTTGGATC
1 TTTGGAGCGA-CAGACTTGGATC
195692964 T
1 T
195692965 AGCCATCGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
23 11 0.55
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (22 bp):
TTTGGAGCGACAGACTTGGATC
Found at i:195693305 original size:28 final size:28
Alignment explanation
Indices: 195693265--195693329 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
195693255 ATTTGCTAGA
*
195693265 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
195693293 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
*
195693321 ATGCCCCTA
1 ATACCCCTA
195693330 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:195693536 original size:29 final size:28
Alignment explanation
Indices: 195693435--195693525 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
195693425 AGGAAGCGTC
*
195693435 CTGGTGGCTA-TGCTACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
195693463 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
* *
195693491 CTGGTGGCACTGCCACAAAATATCTTTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
195693520 CTGGTG
1 CTGGTG
195693526 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
28 49 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:195694004 original size:18 final size:18
Alignment explanation
Indices: 195693965--195694005 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
195693955 TAATAAGGCC
* *
195693965 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
195693983 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
195694001 TTTTA
1 TTTTA
195694006 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:195694623 original size:11 final size:10
Alignment explanation
Indices: 195694595--195694632 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
195694585 AGCCTGCAAG
195694595 TATTCTGAAT
1 TATTCTGAAT
*
195694605 TTTTCTGAAT
1 TATTCTGAAT
195694615 ATATTCTGAAT
1 -TATTCTGAAT
195694626 TA-TCTGA
1 TATTCTGA
195694633 GTGTACTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 5 0.20
10 11 0.44
11 9 0.36
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.50
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:195701134 original size:28 final size:28
Alignment explanation
Indices: 195701102--195701166 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
195701092 ATTTACTAGA
*
195701102 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
195701130 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
195701158 ATACCCCTA
1 ATACCCCTA
195701167 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:195701373 original size:29 final size:28
Alignment explanation
Indices: 195701272--195701362 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
195701262 AGGAAGCGTC
195701272 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
195701300 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
195701328 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
195701357 CTGGTG
1 CTGGTG
195701363 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:195701387 original size:56 final size:55
Alignment explanation
Indices: 195701272--195701387 Score: 137
Period size: 56 Copynumber: 2.1 Consensus size: 55
195701262 AGGAAGCGTC
* *
195701272 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * *
195701328 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
195701384 CTGG
1 CTGG
195701388 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
55 9 0.17
56 29 0.56
57 14 0.27
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:195709138 original size:40 final size:40
Alignment explanation
Indices: 195709079--195709222 Score: 272
Period size: 40 Copynumber: 3.6 Consensus size: 40
195709069 GGATTGATAA
195709079 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
195709118 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
195709158 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
195709198 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
195709223 AGCAAGTAGT
Statistics
Matches: 103, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
39 10 0.10
40 93 0.90
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:195709237 original size:80 final size:80
Alignment explanation
Indices: 195709079--195709254 Score: 268
Period size: 80 Copynumber: 2.2 Consensus size: 80
195709069 GGATTGATAA
*
195709079 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
* *
195709143 TGCGAGTTACTATAT
66 AGCAAGTTACTATAT
195709158 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
*
195709223 AGCAAG-TAGTTATAT
66 AGCAAGTTA-CTATAT
* *
195709238 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
195709255 ATGCTTGGGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
79 26 0.29
80 63 0.71
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
AGCAAGTTACTATAT
Found at i:195709522 original size:22 final size:21
Alignment explanation
Indices: 195709481--195709524 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
195709471 GAATGTGCAT
195709481 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
195709503 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
195709525 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:195726822 original size:40 final size:39
Alignment explanation
Indices: 195726657--195726840 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
195726647 AAATTGAATG
* * *
195726657 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
195726697 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
195726737 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
195726777 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
195726816 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
195726841 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:195726865 original size:80 final size:81
Alignment explanation
Indices: 195726697--195726885 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
195726687 GCTGGAAATT
* * * *
195726697 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
195726762 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
195726778 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
195726841 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
195726857 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
195726886 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:195734899 original size:40 final size:39
Alignment explanation
Indices: 195734734--195734917 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
195734724 AAATTGAATG
* * *
195734734 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
195734774 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
195734814 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
195734854 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
195734893 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
195734918 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:195734942 original size:80 final size:81
Alignment explanation
Indices: 195734774--195734962 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
195734764 GCTGGAAATT
* * * *
195734774 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
195734839 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
195734855 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
195734918 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
195734934 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
195734963 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:195740184 original size:41 final size:40
Alignment explanation
Indices: 195740057--195740201 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
195740047 CTCGCACAAG
* * * *
195740057 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
195740097 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
195740137 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
195740178 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
195740202 CATTCGAGTA
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.03
40 60 0.65
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:195748179 original size:41 final size:40
Alignment explanation
Indices: 195748017--195748196 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 40
195748007 AATCAAGCAT
* ** *
195748017 CTTCGGG-TTTAG-CCGGATATAACCACTAGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
195748054 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
195748094 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
195748134 CTTC-GGATCTTAGTCCGGATGTAGTCTCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
195748175 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
195748197 CGTTCGAGTA
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
37 7 0.06
38 4 0.03
39 19 0.16
40 61 0.50
41 27 0.22
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:195748187 original size:81 final size:79
Alignment explanation
Indices: 195748017--195748196 Score: 220
Period size: 81 Copynumber: 2.3 Consensus size: 79
195748007 AATCAAGCAT
* * *
195748017 CTTCGGG-TTTAG-CCGGATATAACCACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTC
* *
195748080 ACTAGCATAAATGC
66 ACTAGCACAAAAGC
** * * * *
195748094 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGTCCGGATGTAGT
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCAC-AAGGCCTTCGGATCTTAGCCCGGATATAGT
*
195748159 CTCTTAGCACAAAAGC
65 CAC-TAGCACAAAAGC
195748175 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
195748197 CGTTCGAGTA
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
77 7 0.08
78 4 0.05
79 17 0.20
80 27 0.31
81 32 0.37
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTC
ACTAGCACAAAAGC
Found at i:195751179 original size:42 final size:42
Alignment explanation
Indices: 195751094--195751183 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
195751084 AAACGCCCAG
*
195751094 GACACATGCCCGTGCATGAGGCCATGTCATCCACACGATTGA
1 GACACATGCCCGTGCATGAGGCCATGTCATCCACACGACTGA
** * * * * *
195751136 GACACATGCTTGTGCCTGAGGCCGTGTCATCCATATGGCTGA
1 GACACATGCCCGTGCATGAGGCCATGTCATCCACACGACTGA
195751178 GACACA
1 GACACA
195751184 CGCTCGTGTC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (42 bp):
GACACATGCCCGTGCATGAGGCCATGTCATCCACACGACTGA
Found at i:195760714 original size:40 final size:40
Alignment explanation
Indices: 195760669--195760835 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
195760659 CGGAATATAA
195760669 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
195760709 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
195760749 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
195760789 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
195760828 CCGGATAT
1 CCGGATAT
195760836 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:195768719 original size:40 final size:40
Alignment explanation
Indices: 195768674--195768840 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
195768664 CGGAATATAA
195768674 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
195768714 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
195768754 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
195768794 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
195768833 CCGGATAT
1 CCGGATAT
195768841 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Done.