Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 624 of 770
Found at i:195776685 original size:40 final size:39
Alignment explanation
Indices: 195776640--195776805 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
195776630 CGGAATATAA
195776640 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
195776680 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
195776719 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
195776759 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
195776798 CCGGATAT
1 CCGGATAT
195776806 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:195776762 original size:79 final size:79
Alignment explanation
Indices: 195776656--195776805 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
195776646 ATAATCACGT
*
195776656 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
195776719 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
195776735 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
195776800 GGATAT
66 GGATAT
195776806 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:195780788 original size:13 final size:13
Alignment explanation
Indices: 195780770--195780804 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
195780760 GGTGTGTGAA
195780770 GGACACGGGCCAT
1 GGACACGGGCCAT
195780783 GGACACGGGCCAT
1 GGACACGGGCCAT
195780796 GGACACGGG
1 GGACACGGG
195780805 TGTGTGTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.23, C:0.29, G:0.43, T:0.06
Consensus pattern (13 bp):
GGACACGGGCCAT
Found at i:195782548 original size:37 final size:39
Alignment explanation
Indices: 195782461--195782557 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 39
195782451 CACACCAGAA
*
195782461 TGACGGCCAACGCCTCATCGGATAGTTCAAAGCAAATAAG
1 TGACGACCAACGCCTCATCGGATAGTTCAAAGC-AATAAG
* *
195782501 TGACGACCAACGTCTCATCGGCTAAG-TCAAAGC-A-AAG
1 TGACGACCAACGCCTCATCGGAT-AGTTCAAAGCAATAAG
*
195782538 TGGCGACCAACGCCTCATCG
1 TGACGACCAACGCCTCATCG
195782558 AATCTATCCG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
37 21 0.41
38 1 0.02
40 27 0.53
41 2 0.04
ACGTcount: A:0.32, C:0.29, G:0.23, T:0.16
Consensus pattern (39 bp):
TGACGACCAACGCCTCATCGGATAGTTCAAAGCAATAAG
Found at i:195783498 original size:26 final size:25
Alignment explanation
Indices: 195783464--195783517 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
195783454 ATTTCTCCTT
*
195783464 TTTCTTTTC-TTTTCTTCTTTCTTTC
1 TTTCTTTTCATTTT-TTCTCTCTTTC
*
195783489 TTTCTATTTCATTTTTTCTCTGTTTC
1 TTTCT-TTTCATTTTTTCTCTCTTTC
195783515 TTT
1 TTT
195783518 TTCTTGTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.20
26 16 0.64
27 4 0.16
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (25 bp):
TTTCTTTTCATTTTTTCTCTCTTTC
Found at i:195783674 original size:3 final size:3
Alignment explanation
Indices: 195783668--195783695 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
195783658 CAATTATTTG
195783668 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
195783696 GTAAATATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:195785044 original size:13 final size:13
Alignment explanation
Indices: 195785023--195785056 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
195785013 AACCCAACCT
195785023 AACCCAATTACCC
1 AACCCAATTACCC
*
195785036 AACCTAATTACCC
1 AACCCAATTACCC
195785049 AACCCAAT
1 AACCCAAT
195785057 AATAAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.18
Consensus pattern (13 bp):
AACCCAATTACCC
Found at i:195791532 original size:17 final size:17
Alignment explanation
Indices: 195791512--195791572 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
195791502 ATTTTAATAC
*
195791512 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTAAA
* **
195791529 TTATGTAGTGATTCAAAGA
1 TTATGTAATG-TTTTAA-A
195791548 CTTATGTAATGTTTTAAA
1 -TTATGTAATGTTTTAAA
195791566 TTATGTA
1 TTATGTA
195791573 GTGATTCAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
17 16 0.47
18 4 0.12
19 5 0.15
20 9 0.26
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.49
Consensus pattern (17 bp):
TTATGTAATGTTTTAAA
Found at i:195791551 original size:37 final size:37
Alignment explanation
Indices: 195791510--195791581 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
195791500 TAATTTTAAT
*
195791510 ACTTATGTAATGTTTTTAATTATGTAGTGATTCAAAG
1 ACTTATGTAATGTTTTAAATTATGTAGTGATTCAAAG
195791547 ACTTATGTAATGTTTTAAATTATGTAGTGATTCAA
1 ACTTATGTAATGTTTTAAATTATGTAGTGATTCAA
195791582 TTCGGCTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.46
Consensus pattern (37 bp):
ACTTATGTAATGTTTTAAATTATGTAGTGATTCAAAG
Found at i:195791554 original size:20 final size:18
Alignment explanation
Indices: 195791527--195791581 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 18
195791517 TAATGTTTTT
195791527 AATTATGTAGTGATTCAA
1 AATTATGTAGTGATTCAA
* **
195791545 AGACTTATGTAATG-TTTTA
1 A-A-TTATGTAGTGATTCAA
195791564 AATTATGTAGTGATTCAA
1 AATTATGTAGTGATTCAA
195791582 TTCGGCTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
17 9 0.32
18 5 0.18
19 5 0.18
20 9 0.32
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.42
Consensus pattern (18 bp):
AATTATGTAGTGATTCAA
Found at i:195791594 original size:9 final size:9
Alignment explanation
Indices: 195791580--195791613 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
195791570 GTAGTGATTC
*
195791580 AATTCGGCT
1 AATTCGGAT
*
195791589 AATTCGGTT
1 AATTCGGAT
195791598 AATTCGGAT
1 AATTCGGAT
195791607 AATTCGG
1 AATTCGG
195791614 TTATTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (9 bp):
AATTCGGAT
Found at i:195791603 original size:18 final size:18
Alignment explanation
Indices: 195791580--195791616 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
195791570 GTAGTGATTC
*
195791580 AATTCGGCTAATTCGGTT
1 AATTCGGATAATTCGGTT
195791598 AATTCGGATAATTCGGTT
1 AATTCGGATAATTCGGTT
195791616 A
1 A
195791617 TTTTTAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.38
Consensus pattern (18 bp):
AATTCGGATAATTCGGTT
Found at i:195792002 original size:17 final size:18
Alignment explanation
Indices: 195791975--195792013 Score: 71
Period size: 17 Copynumber: 2.2 Consensus size: 18
195791965 TTTTATTTCA
195791975 TTTACAAAAAATATAAGC
1 TTTACAAAAAATATAAGC
195791993 TTTA-AAAAAATATAAGC
1 TTTACAAAAAATATAAGC
195792010 TTTA
1 TTTA
195792014 TAAATCCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.33
Consensus pattern (18 bp):
TTTACAAAAAATATAAGC
Found at i:195792919 original size:19 final size:20
Alignment explanation
Indices: 195792895--195792932 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
195792885 TCTAGTTAAA
195792895 AATAATATAATAT-ATTATC
1 AATAATATAATATAATTATC
195792914 AATAATATAATATAATTAT
1 AATAATATAATATAATTAT
195792933 TTTAAAATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
AATAATATAATATAATTATC
Found at i:195796258 original size:17 final size:18
Alignment explanation
Indices: 195796236--195796269 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
195796226 AAAGTTATTA
*
195796236 TAAATAT-TATAAAATTT
1 TAAATATGTAAAAAATTT
195796253 TAAATATGTAAAAAATT
1 TAAATATGTAAAAAATT
195796270 ATTAGTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
TAAATATGTAAAAAATTT
Found at i:195796695 original size:29 final size:28
Alignment explanation
Indices: 195796663--195796723 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
195796653 CATATTTAAA
* *
195796663 TTTTTATAATATTTAGTAATTTTTAATAG
1 TTTTTACAATATTTA-AAATTTTTAATAG
* *
195796692 TTTTTACAATGTTTAAAATTTTTTATAG
1 TTTTTACAATATTTAAAATTTTTAATAG
195796720 TTTT
1 TTTT
195796724 GCACCCATCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 15 0.54
29 13 0.46
ACGTcount: A:0.31, C:0.02, G:0.07, T:0.61
Consensus pattern (28 bp):
TTTTTACAATATTTAAAATTTTTAATAG
Found at i:195798103 original size:2 final size:2
Alignment explanation
Indices: 195798096--195798121 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
195798086 CGGCTCTAGC
195798096 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
195798122 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:195798924 original size:40 final size:40
Alignment explanation
Indices: 195798826--195799004 Score: 195
Period size: 40 Copynumber: 4.5 Consensus size: 40
195798816 TTCGAATGGT
* * *
195798826 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
195798867 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
195798907 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
195798947 ATCCGGGCTAATTCCCGAAGGCAATTGT--GAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
195798986 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
195799005 ACAATCGAGC
Statistics
Matches: 119, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
38 23 0.19
39 2 0.02
40 67 0.56
41 27 0.23
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:195811836 original size:29 final size:29
Alignment explanation
Indices: 195811803--195811933 Score: 113
Period size: 29 Copynumber: 4.5 Consensus size: 29
195811793 GTGACGAGAT
*
195811803 TGGCACTAAGTGTGCCTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
195811832 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
195811861 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
195811890 TGGCACTATGTGTGCGGGCTTG-AATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
195811919 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
195811934 GAAATCGAGT
Statistics
Matches: 81, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
28 1 0.01
29 79 0.98
30 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:195822277 original size:44 final size:44
Alignment explanation
Indices: 195822229--195822836 Score: 649
Period size: 44 Copynumber: 13.8 Consensus size: 44
195822219 CCGATAGCCA
* * *
195822229 ATTTGGCGTCACTGTATTATCAGAGAGTAGATCGAAGATAATAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATAG
*
195822273 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGAT-ATCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAAT-AG
* *
195822317 ATTTGGTGTCTCTGTATTGAT-AGAGAGCACG-TCAAAGAT-ATCAG
1 ATTTGGCGTCTCTGTATTG-TCAGAGAGCA-GATCGAAGATAAT-AG
* * * * * *
195822361 ATTGGGTGTCTCCGTATTGAT-AGAGAGTAGATCAAAGATGATAG
1 ATTTGGCGTCTCTGTATTG-TCAGAGAGCAGATCGAAGATAATAG
* * *
195822405 ATTTGGCGTCTTTGTATTGTCAGAGAGCAGATCGAAGATAGTTG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATAG
***
195822449 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCGG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATAG
* * * * * *
195822493 ATTTGGTGTATCTATTTTGTCAGAGAGTAGATCGAAGATAGCT-G
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA-ATAG
* *
195822537 ATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGCT-G
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATA-ATAG
* * * ** *
195822581 ATTTGGCCTCTCTGTATTGTCAGAGAGCAGATCAAAAATAGCAA
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATAG
* *
195822625 ATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATAG
* **
195822669 ATTTGGCGTCTCTGTATTGTCAAAGAGCAGATTAAAGAT-ATCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAAT-AG
* * * *
195822713 ATTTGGCGTCTCTATATTGAT-AGAGAGCAGATTGAAGATGACAG
1 ATTTGGCGTCTCTGTATTG-TCAGAGAGCAGATCGAAGATAATAG
* ***
195822757 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAAATAGCGG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATAG
* *
195822801 ATTTGGCGTCTCCGTATTGTCAGAGAGCAAATCGAA
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
195822837 CATTTCGGTT
Statistics
Matches: 489, Mismatches: 63, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
43 6 0.01
44 477 0.98
45 6 0.01
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (44 bp):
ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAATAG
Found at i:195822487 original size:132 final size:132
Alignment explanation
Indices: 195822221--195822836 Score: 744
Period size: 132 Copynumber: 4.7 Consensus size: 132
195822211 GTAGATCACC
* * * *
195822221 GATAGCCA-ATTTGGCGTCACTGTATTATCAGAGAGTAGATCGAAGATAATAGATTTGGCATCTC
1 GATAG-CAGATTTGGTGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAATAGATTTGGCGTCTC
*
195822285 TGTATTGTCAGAGAGCAGATCGAAGATATCAGATTTGGTGTCTCTGTATTGATAGAGAGCACG-T
65 TGTATTGTCAGAGAGCAGATCGAAGATATCAGATTTGGCGTCTCTGTATTGATAGAGAGCA-GAT
195822349 CAAA
129 CAAA
* * * * * *
195822353 GATATCAGATTGGGTGTCTCCGTATTGAT-AGAGAGTAGATCAAAGATGATAGATTTGGCGTCTT
1 GATAGCAGATTTGGTGTCTCTGTATTG-TCAGAGAGTAGATCGAAGATAATAGATTTGGCGTCTC
*
195822417 TGTATTGTCAGAGAGCAGATCGAAGATAGT-TGATTTGGCGTCTCTGTATTG-TCAGAGAGCAGA
65 TGTATTGTCAGAGAGCAGATCGAAGATA-TCAGATTTGGCGTCTCTGTATTGAT-AGAGAGCAGA
*
195822480 TCGAA
128 TCAAA
* * * * *
195822485 GATAGCGGATTTGGTGTATCTATTTTGTCAGAGAGTAGATCGAAGATAGCT-GATTTGGCGTCTC
1 GATAGCAGATTTGGTGTCTCTGTATTGTCAGAGAGTAGATCGAAGATA-ATAGATTTGGCGTCTC
* * * *
195822549 TGTATTGTCAGAGAGTAGATCGAAGATAGCTGATTTGGCCTCTCTGTATTG-TCAGAGAGCAGAT
65 TGTATTGTCAGAGAGCAGATCGAAGATATCAGATTTGGCGTCTCTGTATTGAT-AGAGAGCAGAT
195822613 CAAA
129 CAAA
* * * *
195822617 AATAGCAAATTTGGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCT
1 GATAGCAGATTTGGTGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAATAGATTTGGCGTCTCT
* ** * **
195822682 GTATTGTCAAAGAGCAGATTAAAGATATCAGATTTGGCGTCTCTATATTGATAGAGAGCAGATTG
66 GTATTGTCAGAGAGCAGATCGAAGATATCAGATTTGGCGTCTCTGTATTGATAGAGAGCAGATCA
195822747 AA
131 AA
* * * ***
195822749 GAT-GACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAAATAGCGGATTTGGCGTCTC
1 GATAG-CAGATTTGGTGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAATAGATTTGGCGTCTC
* *
195822813 CGTATTGTCAGAGAGCAAATCGAA
65 TGTATTGTCAGAGAGCAGATCGAA
195822837 CATTTCGGTT
Statistics
Matches: 415, Mismatches: 58, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
131 6 0.01
132 405 0.98
133 4 0.01
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (132 bp):
GATAGCAGATTTGGTGTCTCTGTATTGTCAGAGAGTAGATCGAAGATAATAGATTTGGCGTCTCT
GTATTGTCAGAGAGCAGATCGAAGATATCAGATTTGGCGTCTCTGTATTGATAGAGAGCAGATCA
AA
Found at i:195824541 original size:19 final size:21
Alignment explanation
Indices: 195824513--195824556 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
195824503 TACATTTTAT
195824513 TTATAAATTTTA-T-TATATA
1 TTATAAATTTTACTATATATA
*
195824532 TTATATATTTTACTATATATA
1 TTATAAATTTTACTATATATA
195824553 TTAT
1 TTAT
195824557 TCTTTGCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.50
20 1 0.05
21 10 0.45
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (21 bp):
TTATAAATTTTACTATATATA
Found at i:195826583 original size:43 final size:43
Alignment explanation
Indices: 195826536--195826787 Score: 267
Period size: 43 Copynumber: 5.8 Consensus size: 43
195826526 AATGCCTATG
* * ** * *
195826536 TCCCAGATGTGATCTTACATGTAATCACATATTGATGCCACTA
1 TCCCAGACGTGGTCTTACACATAATTACATATCGATGCCACTA
* * ** * *
195826579 TCCCAGACATGGTCTTACACGTAATCCCATATCGATGCCAATG
1 TCCCAGACGTGGTCTTACACATAATTACATATCGATGCCACTA
* *
195826622 T-CAAGGGACGTGGTCTTAGACATAATTACATATCGATGCCAAC-A
1 TCCCA--GACGTGGTCTTACACATAATTACATATCGATGCC-ACTA
* * *
195826666 TCCCAGACGTGGTCTTACACATAATTACATATTGATGCCAATG
1 TCCCAGACGTGGTCTTACACATAATTACATATCGATGCCACTA
* *
195826709 TCCCAGATGTGGTTTTACACATAATTACATATCGATGCCAAC-A
1 TCCCAGACGTGGTCTTACACATAATTACATATCGATGCC-ACTA
*
195826752 TCCCAAACGTGGTCTTACACATAATTACATATCGAT
1 TCCCAGACGTGGTCTTACACATAATTACATATCGAT
195826788 ATCACATATA
Statistics
Matches: 174, Mismatches: 29, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
42 3 0.02
43 137 0.79
44 31 0.18
45 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACACATAATTACATATCGATGCCACTA
Found at i:195826762 original size:86 final size:86
Alignment explanation
Indices: 195826527--195826787 Score: 337
Period size: 86 Copynumber: 3.0 Consensus size: 86
195826517 ATATCGTACA
* * ** * * *
195826527 ATGCCTATGTCCCAGATGTGATCTTACATGTAATCACATATTGATGCC-ACTATCCCAGACATGG
1 ATGCCAATGTCCCAGATGTGGTCTTACACATAATTACATATCGATGCCAAC-ATCCCAGACGTGG
* **
195826591 TCTTACACGTAATCCCATATCG
65 TCTTACACATAATTACATATCG
* * *
195826613 ATGCCAATGT-CAAGGGACGTGGTCTTAGACATAATTACATATCGATGCCAACATCCCAGACGTG
1 ATGCCAATGTCCCA--GATGTGGTCTTACACATAATTACATATCGATGCCAACATCCCAGACGTG
*
195826677 GTCTTACACATAATTACATATTG
64 GTCTTACACATAATTACATATCG
* *
195826700 ATGCCAATGTCCCAGATGTGGTTTTACACATAATTACATATCGATGCCAACATCCCAAACGTGGT
1 ATGCCAATGTCCCAGATGTGGTCTTACACATAATTACATATCGATGCCAACATCCCAGACGTGGT
195826765 CTTACACATAATTACATATCG
66 CTTACACATAATTACATATCG
195826786 AT
1 AT
195826788 ATCACATATA
Statistics
Matches: 151, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
85 2 0.01
86 78 0.52
87 67 0.44
88 4 0.03
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (86 bp):
ATGCCAATGTCCCAGATGTGGTCTTACACATAATTACATATCGATGCCAACATCCCAGACGTGGT
CTTACACATAATTACATATCG
Found at i:195830306 original size:46 final size:46
Alignment explanation
Indices: 195830253--195830428 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
195830243 TATTTGGGCA
195830253 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
195830299 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
195830346 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
195830392 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
195830429 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:195830408 original size:93 final size:93
Alignment explanation
Indices: 195830249--195830420 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
195830239 GGGATATTTG
* *
195830249 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
195830314 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
195830342 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
195830407 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
195830421 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:195833414 original size:15 final size:15
Alignment explanation
Indices: 195833375--195833454 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
195833365 GTATCTTGGG
*
195833375 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
195833390 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
195833405 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
195833420 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
195833435 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
195833449 TTTCTT
1 TTTCTT
195833455 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:195833444 original size:30 final size:30
Alignment explanation
Indices: 195833366--195833453 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
195833356 CATAGTATCG
* * *
195833366 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
195833396 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
195833426 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
195833454 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:195835879 original size:46 final size:46
Alignment explanation
Indices: 195835826--195836000 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
195835816 TATTTGGGCA
195835826 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
195835872 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
195835919 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
195835965 CCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
195836001 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
43 4 0.04
45 34 0.30
46 35 0.31
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:195835988 original size:45 final size:46
Alignment explanation
Indices: 195835827--195836000 Score: 223
Period size: 45 Copynumber: 3.8 Consensus size: 46
195835817 ATTTGGGCAT
* *
195835827 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
195835873 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
195835918 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
195835966 CCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
195836001 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 8, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 35 0.32
46 31 0.28
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:195844569 original size:17 final size:18
Alignment explanation
Indices: 195844527--195844575 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
195844517 AGTTGAAAAG
195844527 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
195844546 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
195844563 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
195844576 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:195845456 original size:40 final size:40
Alignment explanation
Indices: 195845390--195845540 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
195845380 AAATTGAATG
* * *
195845390 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
195845429 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
195845469 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
195845509 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
195845541 ACTGATTATA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:195848503 original size:18 final size:18
Alignment explanation
Indices: 195848480--195848521 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
195848470 AATCGTAGTC
195848480 TCACTACAGTTTTCAGTT
1 TCACTACAGTTTTCAGTT
*
195848498 TCACTATAGTTTTCAGTT
1 TCACTACAGTTTTCAGTT
195848516 TACACT
1 T-CACT
195848522 CCCTAGAGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.45
Consensus pattern (18 bp):
TCACTACAGTTTTCAGTT
Found at i:195851410 original size:46 final size:45
Alignment explanation
Indices: 195851247--195851416 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 45
195851237 GGTTGAGCAT
* * *
195851247 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAACGC
* * *
195851291 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAC---GC
195851336 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-AACGC
*
195851384 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
195851417 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
41 6 0.06
43 2 0.02
44 27 0.25
46 32 0.30
47 27 0.25
48 4 0.04
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAACGC
Found at i:195852316 original size:20 final size:20
Alignment explanation
Indices: 195852279--195852321 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
195852269 CTGTTCTGAC
*
195852279 TTTAAAAATTCATAATAA-T
1 TTTAAAAATTAATAATAAGT
*
195852298 TTTAAAAATATAATTATAAGT
1 TTTAAAAAT-TAATAATAAGT
195852319 TTT
1 TTT
195852322 TATTTATATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
20 7 0.35
21 4 0.20
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (20 bp):
TTTAAAAATTAATAATAAGT
Found at i:195858188 original size:47 final size:47
Alignment explanation
Indices: 195858070--195858242 Score: 198
Period size: 45 Copynumber: 3.7 Consensus size: 47
195858060 GGATGGTTGA
* *
195858070 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAG
* *
195858118 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--AG
* *
195858163 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAAG
*
195858210 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
195858243 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 9, Indels: 17
0.81 0.07 0.13
Matches are distributed among these distances:
43 6 0.06
45 34 0.31
46 29 0.27
47 32 0.29
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAAG
Found at i:195868163 original size:19 final size:19
Alignment explanation
Indices: 195868141--195868183 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
195868131 GGGACACGCT
195868141 CGTGTGTTTTCAACACGAC
1 CGTGTGTTTTCAACACGAC
*
195868160 CGTGTGTTTTCAACACGTC
1 CGTGTGTTTTCAACACGAC
195868179 CGTGT
1 CGTGT
195868184 CCTCATGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.35
Consensus pattern (19 bp):
CGTGTGTTTTCAACACGAC
Found at i:195869825 original size:50 final size:50
Alignment explanation
Indices: 195869760--195870153 Score: 373
Period size: 50 Copynumber: 7.9 Consensus size: 50
195869750 ACTAAAGCTC
* * *
195869760 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
** * * *
195869810 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
** * * *** *
195869860 TCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATAGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * * * *
195869912 -CGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGATCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* ** * * *
195869961 TCTAGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGA-CTAAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-ATCAA
* * ** *
195870011 TCTGATACACATAG-AGCCTACACTTAGTACTACACATGTGATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * * *
195870062 -CAGGTACGCATAGTAGCCTGCACTTAGTATTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* *
195870111 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC
195870154 TCACAACGAA
Statistics
Matches: 271, Mismatches: 64, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
49 33 0.12
50 178 0.66
51 59 0.22
52 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:195869945 original size:101 final size:100
Alignment explanation
Indices: 195869821--195870152 Score: 313
Period size: 101 Copynumber: 3.3 Consensus size: 100
195869811 CTGGTACATG
* *
195869821 TAGTAGCCTGCACTTAGTACTACACATGTGA-CTTAACCATCTAATACACGTAGTAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACATGTGATC-TAACAATCTAATACACGTAGTAGCCTGCACT
** * *
195869885 TAGTACTACACACGTGA-TAGAAGTTAACGGGTACGCA
65 TAGTACTACACACGTGACTA-AA-CCAACGGATACACA
* * * *
195869922 TAGTAGCCTACACTTAGTACTACACATGCGATCTATCAATCTAGTACATGTAGTAGCCTGCACTT
1 TAGTAGCCTACACTTAGTACTACACATGTGATCTAACAATCTAATACACGTAGTAGCCTGCACTT
* *
195869987 AGTACTACACACGTGACTAAACCATCTGATACACA
66 AGTACTACACACGTGACTAAACCAACGGATACACA
* * *
195870022 TAG-AGCCTACACTTAGTACTACACATGTGATC-AA-AGT-TAACAGGTACGCATAGTAGCCTGC
1 TAGTAGCCTACACTTAGTACTACACATGTGATCTAACAATCT-A-A--TACACGTAGTAGCCTGC
* * * * *
195870083 ACTTAGTATTACACATGCGACCT--ATCAATCTGG-TACGCA
62 ACTTAGTACTACACACGTGA-CTAAACCAA-C-GGATACACA
* *
195870122 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTACACTTAGTACTACACATGTGA
195870153 CTCACAACGA
Statistics
Matches: 193, Mismatches: 28, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
96 1 0.01
97 3 0.02
98 1 0.01
99 31 0.16
100 51 0.26
101 103 0.53
102 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTACACTTAGTACTACACATGTGATCTAACAATCTAATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGACTAAACCAACGGATACACA
Found at i:195870108 original size:150 final size:151
Alignment explanation
Indices: 195869763--195870154 Score: 626
Period size: 150 Copynumber: 2.6 Consensus size: 151
195869753 AAAGCTCTCT
*
195869763 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATTAATCTGGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
* * * *
195869828 CTGCACTTAGTACTACACATGTGACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTAAACCATCTAATACACATAGTAGCCTACACTTAGTACTA
*
195869893 CACACGTGATAGAAGTTAACG
131 CACACGTGATAGAAGTTAACA
* * *
195869914 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGATCTATCAATCTAGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
*
195869979 CTGCACTTAGTACTACACACGTGACTAAACCATCTGATACACATAG-AGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTAAACCATCTAATACACATAGTAGCCTACACTTAGTACTA
*
195870043 CACATGTGATCA-AAGTTAACA
131 CACACGTGAT-AGAAGTTAACA
* ***
195870064 GGTACGCATAGTAGCCTGCACTTAGTATTACACATGCGACCTATCAATCTGGTACGCATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
195870129 CTGCACTTAGTACTACACACGTGACT
66 CTGCACTTAGTACTACACACGTGACT
195870155 CACAACGAAT
Statistics
Matches: 222, Mismatches: 18, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
150 118 0.53
151 104 0.47
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
CTGCACTTAGTACTACACACGTGACTAAACCATCTAATACACATAGTAGCCTACACTTAGTACTA
CACACGTGATAGAAGTTAACA
Found at i:195877074 original size:20 final size:20
Alignment explanation
Indices: 195877049--195877086 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
195877039 TATAATATAG
195877049 AAAATAAATATTATTTAATA
1 AAAATAAATATTATTTAATA
* *
195877069 AAAATATATATTTTTTAA
1 AAAATAAATATTATTTAA
195877087 AGGTTATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAATAAATATTATTTAATA
Found at i:195877163 original size:43 final size:42
Alignment explanation
Indices: 195877084--195877239 Score: 168
Period size: 43 Copynumber: 3.6 Consensus size: 42
195877074 ATATATTTTT
* * *
195877084 TAAAGGTTATATTCTTTAGCGGCGTTTGTGAGAAAAGCGTCGC
1 TAAAGGTT-TGTTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGC
* * * *
195877127 TAAAGGTTTGTTCTGTAGTGGCGTTTGTAAAAAAAAGTGCCGC
1 TAAAGGTTTGTTCTTTAGCGGCGTTTGT-GAAAAAAGCGCCGC
* * *
195877170 TAAAGGTCATGGTCTTTAGCGGCATTTGTGAAAAAAGCGCCGC
1 TAAAGGT-TTGTTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGC
* *
195877213 TAAAGGTCATGGTCTTTAGCGGCGTTT
1 TAAAGGT-TTGTTCTTTAGCGGCGTTT
195877240 TTTTAAATAA
Statistics
Matches: 96, Mismatches: 15, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
42 17 0.18
43 63 0.66
44 16 0.17
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (42 bp):
TAAAGGTTTGTTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGC
Found at i:195877416 original size:14 final size:14
Alignment explanation
Indices: 195877397--195877442 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
195877387 GTGGTTTAAG
195877397 GTTTAGGGGATATA
1 GTTTAGGGGATATA
* *
195877411 GTTTAGGGTACTTTA
1 GTTTAGGGGA-TATA
195877426 G--TAGGGGATATA
1 GTTTAGGGGATATA
195877438 GTTTA
1 GTTTA
195877443 ATGGTTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
12 4 0.16
13 6 0.24
14 11 0.44
15 4 0.16
ACGTcount: A:0.26, C:0.02, G:0.33, T:0.39
Consensus pattern (14 bp):
GTTTAGGGGATATA
Found at i:195877600 original size:20 final size:21
Alignment explanation
Indices: 195877571--195877611 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
195877561 TTATTTTATG
*
195877571 GTTTATGG-TTAGGGGATATA
1 GTTTAGGGTTTAGGGGATATA
195877591 GTTTAGGGTTTAGGGGATATA
1 GTTTAGGGTTTAGGGGATATA
195877612 TATATACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.24, C:0.00, G:0.37, T:0.39
Consensus pattern (21 bp):
GTTTAGGGTTTAGGGGATATA
Found at i:195877648 original size:21 final size:21
Alignment explanation
Indices: 195877624--195877678 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
195877614 TATACTTTAA
*
195877624 AGTTTAAGG-TTATAGGGATAT
1 AGTTTAGGGTTTAT-GGGATAT
195877645 AGTTTAGGGTTTATGGGATAT
1 AGTTTAGGGTTTATGGGATAT
*
195877666 ATTTTAGGGTTTA
1 AGTTTAGGGTTTA
195877679 AGGTTATATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 27 0.87
22 4 0.13
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (21 bp):
AGTTTAGGGTTTATGGGATAT
Found at i:195877650 original size:28 final size:28
Alignment explanation
Indices: 195877613--195877712 Score: 72
Period size: 28 Copynumber: 3.8 Consensus size: 28
195877603 GGGGATATAT
*
195877613 ATATACTTTAAAGTTTAAGGTTATAGGG
1 ATATAGTTTAAAGTTTAAGGTTATAGGG
195877641 ATATAGTTT--AG-----GGTT-TATGGG
1 ATATAGTTTAAAGTTTAAGGTTATA-GGG
* ** *
195877662 ATATATTTTAGGGTTTAAGGTTATATGG
1 ATATAGTTTAAAGTTTAAGGTTATAGGG
*
195877690 ATATAGTTTAATGGTTTAAGGTT
1 ATATAGTTTAA-AGTTTAAGGTT
195877713 TACAGTTTTG
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
20 2 0.04
21 15 0.27
23 1 0.02
26 2 0.04
28 23 0.41
29 13 0.23
ACGTcount: A:0.30, C:0.01, G:0.25, T:0.44
Consensus pattern (28 bp):
ATATAGTTTAAAGTTTAAGGTTATAGGG
Found at i:195877689 original size:29 final size:28
Alignment explanation
Indices: 195877646--195877714 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
195877636 TAGGGATATA
* *
195877646 GTTTAGGGTTTATGGGATATA-TTTTAGG
1 GTTTAAGGTTTAT-GGATATAGTTTAAGG
*
195877674 GTTTAAGGTTATATGGATATAGTTTAATG
1 GTTTAAGGTT-TATGGATATAGTTTAAGG
195877703 GTTTAAGGTTTA
1 GTTTAAGGTTTA
195877715 CAGTTTTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 18 0.50
29 18 0.50
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (28 bp):
GTTTAAGGTTTATGGATATAGTTTAAGG
Found at i:195877840 original size:28 final size:29
Alignment explanation
Indices: 195877794--195877866 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 29
195877784 AATTCATACA
* *
195877794 TTTTGTGG-TTAAGGATTAGGGGTTATTG
1 TTTTGTGGTTTAAGGATTAGGGGATATAG
*
195877822 TTTTGTGGTTTATGG-TTAGGGGATATAG
1 TTTTGTGGTTTAAGGATTAGGGGATATAG
*
195877850 TTTAG-GGTTTAGAGGAT
1 TTTTGTGGTTTA-AGGAT
195877867 ATACTTTAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
27 6 0.16
28 25 0.68
29 6 0.16
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.45
Consensus pattern (29 bp):
TTTTGTGGTTTAAGGATTAGGGGATATAG
Found at i:195877866 original size:21 final size:21
Alignment explanation
Indices: 195877829--195877890 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
195877819 TTGTTTTGTG
* *
195877829 GTTTATGG-TTAGGGGATATA
1 GTTTAGGGTTTAGAGGATATA
195877849 GTTTAGGGTTTAGAGGATATA
1 GTTTAGGGTTTAGAGGATATA
* *
195877870 CTTTAGGGTTTA-AGGTTATA
1 GTTTAGGGTTTAGAGGATATA
195877890 G
1 G
195877891 GGATATAGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
20 14 0.39
21 22 0.61
ACGTcount: A:0.26, C:0.02, G:0.32, T:0.40
Consensus pattern (21 bp):
GTTTAGGGTTTAGAGGATATA
Found at i:195877886 original size:28 final size:29
Alignment explanation
Indices: 195877849--195877920 Score: 94
Period size: 28 Copynumber: 2.5 Consensus size: 29
195877839 AGGGGATATA
*
195877849 GTTTAGGGTTTAGAGGATATACTTT-AGG
1 GTTTAAGGTTTAGAGGATATACTTTAAGG
* *
195877877 GTTTAAGGTTATAG-GGATATAGTTTAATG
1 GTTTAAGGTT-TAGAGGATATACTTTAAGG
195877906 GTTTAAGGTTTAGAG
1 GTTTAAGGTTTAGAG
195877921 TTTTGATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
28 22 0.58
29 16 0.42
ACGTcount: A:0.28, C:0.01, G:0.31, T:0.40
Consensus pattern (29 bp):
GTTTAAGGTTTAGAGGATATACTTTAAGG
Found at i:195880206 original size:14 final size:13
Alignment explanation
Indices: 195880183--195880212 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
195880173 ATTACTATAA
195880183 TAATTATATGAAG
1 TAATTATATGAAG
195880196 TAATATATATGAAG
1 TAAT-TATATGAAG
195880210 TAA
1 TAA
195880213 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:195880591 original size:183 final size:183
Alignment explanation
Indices: 195880283--195880651 Score: 693
Period size: 183 Copynumber: 2.0 Consensus size: 183
195880273 GATATAGTTC
195880283 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
*
195880348 ACTATTGTTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
** *
195880413 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATGATCTTA
131 GGATTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
*
195880466 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
195880531 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
195880596 GGATTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GGATTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
195880649 CAT
1 CAT
195880652 CTGTTCTAGG
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 181 1.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (183 bp):
CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GGATTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:195881824 original size:9 final size:9
Alignment explanation
Indices: 195881797--195881924 Score: 112
Period size: 9 Copynumber: 13.6 Consensus size: 9
195881787 ATTGATCATT
*
195881797 ACTTAAATA
1 ACTTACATA
*
195881806 AATTACATA
1 ACTTACATA
*
195881815 ACTTAAATA
1 ACTTACATA
* *
195881824 ACTCATATA
1 ACTTACATA
195881833 ACTTACATA
1 ACTTACATA
*
195881842 ATTTACATAACA
1 ACTTACAT---A
195881854 ACTTACATA
1 ACTTACATA
*
195881863 ACTCACATA
1 ACTTACATA
195881872 ACTTACATA
1 ACTTACATA
*
195881881 ATTTACATA
1 ACTTACATA
*
195881890 ACTCACATA
1 ACTTACATA
*
195881899 ACGTACATAACA
1 ACTTACAT---A
195881911 ACTTACATA
1 ACTTACATA
195881920 ACTTA
1 ACTTA
195881925 ACTAATACAT
Statistics
Matches: 95, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
9 79 0.83
12 16 0.17
ACGTcount: A:0.48, C:0.20, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:195881867 original size:39 final size:39
Alignment explanation
Indices: 195881814--195881891 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
195881804 TAAATTACAT
*
195881814 AACTTAAATAACTCATATAACTTACATAATTTACATAAC
1 AACTTAAATAACTCACATAACTTACATAATTTACATAAC
*
195881853 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTAAATAACTCACATAACTTACATAATTTACATAAC
195881892 TCACATAACG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTAAATAACTCACATAACTTACATAATTTACATAAC
Found at i:195881891 original size:57 final size:57
Alignment explanation
Indices: 195881810--195881922 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
195881800 TAAATAAATT
* * **
195881810 ACATAACTTAAATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTAAATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* * *
195881867 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTAAATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
195881923 TAACTAATAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTAAATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:195884021 original size:46 final size:44
Alignment explanation
Indices: 195883917--195884024 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
195883907 TGTCTTTGAC
** * * *
195883917 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
195883961 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
195884007 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
195884025 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:195885168 original size:2 final size:2
Alignment explanation
Indices: 195885161--195885186 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
195885151 AATAATAATA
195885161 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
195885187 TTTTTTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:195890078 original size:21 final size:21
Alignment explanation
Indices: 195890040--195890085 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
195890030 AACTTACAGC
**
195890040 GGAGGCAGCAGCGCGGGAGGA
1 GGAGGCAGCAGCAAGGGAGGA
*
195890061 GGAGGCAGCAGCAAGGGAGGC
1 GGAGGCAGCAGCAAGGGAGGA
195890082 GGAG
1 GGAG
195890086 CAGAACAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.17, G:0.57, T:0.00
Consensus pattern (21 bp):
GGAGGCAGCAGCAAGGGAGGA
Found at i:195890661 original size:99 final size:98
Alignment explanation
Indices: 195890523--195890856 Score: 395
Period size: 100 Copynumber: 3.5 Consensus size: 98
195890513 TTCCTGTAGT
* * *
195890523 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAAGCAGAATTTGTAAGG
1 GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAA-CAGAATTTGAAAAG
195890588 CAAAAATTGAAAAACAGAAATTGAAAATACCTCA
65 CAAAAATTGAAAAACAGAAATTGAAAATACCTCA
*
195890622 GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AAA
1 GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTG-AAAACAGAATTTGAAA
* * *
195890686 AGCAGAAATTGAAAAACAGAAATTAAAAATACCTCG
63 AGCAAAAATTGAAAAACAGAAATTGAAAATACCTCA
* *
195890722 GCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA-TT----------TTTGAAAAGC
1 GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAACAGAATTTGAAAAGC
* * *
195890776 ATAAATTGAAAAAACGGAAATTGAAAATACCTTA
66 AAAAATTG-AAAAACAGAAATTGAAAATACCTCA
* *
195890810 GCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTT
1 GC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
195890857 TTTTTGAAAG
Statistics
Matches: 208, Mismatches: 19, Indels: 24
0.83 0.08 0.10
Matches are distributed among these distances:
86 2 0.01
87 13 0.06
88 23 0.11
90 36 0.17
91 2 0.01
97 2 0.01
99 41 0.20
100 74 0.36
101 11 0.05
102 4 0.02
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (98 bp):
GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAACAGAATTTGAAAAGC
AAAAATTGAAAAACAGAAATTGAAAATACCTCA
Found at i:195890705 original size:14 final size:13
Alignment explanation
Indices: 195890670--195890714 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
195890660 TTGATTTTTG
195890670 AAAAACAGAAATT
1 AAAAACAGAAATT
*
195890683 AAAAGCAGAAATT
1 AAAAACAGAAATT
195890696 GAAAAACAGAAATT
1 -AAAAACAGAAATT
195890710 AAAAA
1 AAAAA
195890715 TACCTCGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:195890735 original size:100 final size:101
Alignment explanation
Indices: 195890523--195890802 Score: 413
Period size: 100 Copynumber: 2.8 Consensus size: 101
195890513 TTCCTGTAGT
* * *
195890523 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTGAAAAGCAGAATTTGTAA
1 GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAA
* * *
195890586 GGCAAAAATTGAAAAACAGAAATTGAAAATACCTCA
66 AGCAGAAATTGAAAAACAGAAATTAAAAATACCTCA
*
195890622 GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AAA
1 GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAA
*
195890686 AGCAGAAATTGAAAAACAGAAATTAAAAATACCTCG
66 AGCAGAAATTGAAAAACAGAAATTAAAAATACCTCA
* * *
195890722 GCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAA
1 GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTG-AA
* *
195890787 AAACGGAAATTGAAAA
65 AAGCAGAAATTGAAAA
195890803 TACCTTAGCG
Statistics
Matches: 163, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
99 41 0.25
100 91 0.56
101 15 0.09
102 16 0.10
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.24
Consensus pattern (101 bp):
GCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAA
AGCAGAAATTGAAAAACAGAAATTAAAAATACCTCA
Found at i:195890850 original size:90 final size:87
Alignment explanation
Indices: 195890683--195890858 Score: 244
Period size: 90 Copynumber: 2.0 Consensus size: 87
195890673 AACAGAAATT
* * * *
195890683 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTAGGCGTGACCCGAGGCCCAACTCACCTC
195890748 TCGCAATATGAGTTGATTTTTG
66 TCGCAATATGAGTTGATTTTTG
* * * * *
195890770 AAAAGCATAAATTGAAAAAACGGAAATTGAAAATACCTTAGCGTGTGACCTGAGGCCCAACTCAC
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACC-TAG-GCGTGACCCGAGGCCCAACTCAC
195890835 CTCTCGCAATATGAGTTGATTTTT
63 CTCTCGCAATATGAGTTGATTTTT
195890859 TTTGAAAGAT
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
87 13 0.17
88 20 0.26
89 2 0.03
90 42 0.55
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTAGGCGTGACCCGAGGCCCAACTCACCTC
TCGCAATATGAGTTGATTTTTG
Found at i:195891753 original size:12 final size:12
Alignment explanation
Indices: 195891736--195891768 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
195891726 CCCTCTCTCT
195891736 TTTTCTTTTTTC
1 TTTTCTTTTTTC
*
195891748 TTTTCTTTTCTC
1 TTTTCTTTTTTC
195891760 TTTT-TTTTT
1 TTTTCTTTTT
195891769 AAGATGCCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTCTTTTTTC
Found at i:195891758 original size:17 final size:17
Alignment explanation
Indices: 195891736--195891768 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
195891726 CCCTCTCTCT
195891736 TTTTCT-TTTTTCTTTTC
1 TTTTCTCTTTTT-TTTTC
195891753 TTTTCTCTTTTTTTTT
1 TTTTCTCTTTTTTTTT
195891769 AAGATGCCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTCTCTTTTTTTTTC
Found at i:195902828 original size:25 final size:25
Alignment explanation
Indices: 195902779--195902884 Score: 187
Period size: 25 Copynumber: 4.2 Consensus size: 25
195902769 TGATACAAAT
195902779 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
195902804 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTTCA
*
195902829 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTTCA
195902854 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTTCA
195902879 TGATAA
1 TGATAA
195902885 GAATTACATG
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
24 13 0.17
25 65 0.83
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.38
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTTCA
Found at i:195912900 original size:19 final size:20
Alignment explanation
Indices: 195912872--195912913 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
195912862 GTCTTTTCAC
* *
195912872 GAAATTTAATGCACATG-AT
1 GAAATGTAATGCAAATGAAT
195912891 GAAATGTAATGCAAATGAAT
1 GAAATGTAATGCAAATGAAT
195912911 GAA
1 GAA
195912914 TGCAAAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.48, C:0.07, G:0.19, T:0.26
Consensus pattern (20 bp):
GAAATGTAATGCAAATGAAT
Found at i:195922749 original size:27 final size:26
Alignment explanation
Indices: 195922712--195923302 Score: 568
Period size: 27 Copynumber: 22.1 Consensus size: 26
195922702 ATACCCTTAG
195922712 TTGTAAAATTACCAAAGTACCCTCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* *
195922739 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
* *
195922766 TTGTAAAATTATCGAAATACCGTCGA-
1 TTGTAAAATTA-CCAAATACCCTCGAT
*
195922792 TTGTAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
* *
195922819 TTGTAAAATTACTGAAATACCGTCGA-
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
195922845 TTGTAAAATTACTAAAATACCCTCGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
195922872 TTGTAAAATTATCGAAATACCCTC-AGT
1 TTGTAAAATTA-CCAAATACCCTCGA-T
* **
195922899 TTGCAAAATTAATAAAATACCCTCGAT
1 TTGTAAAATT-ACCAAATACCCTCGAT
* *
195922926 TTGTAAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAT
* *
195922953 TTATAAAATTACCAAAGTACCC-CCAGT
1 TTGTAAAATTACCAAA-TACCCTCGA-T
* * *
195922980 TTATAAAATTACCCAAATATCCTCTAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
*
195923007 TTGTAAAATTACCGAAATACCGTCGA-
1 TTGTAAAATTACC-AAATACCCTCGAT
*
195923033 TTGTAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
* *
195923060 TTGTAAAATTACCAAAGTACCCCCAAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* *
195923087 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
* * *
195923114 TTGTAAAATTATCGAAATACCGTTGA-
1 TTGTAAAATTA-CCAAATACCCTCGAT
**
195923140 TTGTAAAATTATTGAAATACCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
*
195923167 TTGTAAAATTACCGAAATACCGTCGA-
1 TTGTAAAATTACC-AAATACCCTCGAT
* *
195923193 TTGTAAAATTACTAAAATACCCTCAAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
195923220 TTGTAAAATTACCAAAATACCCTC-AGT
1 TTGTAAAATTACC-AAATACCCTCGA-T
* * *
195923247 TTGCAAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
195923274 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
195923301 TT
1 TT
195923303 ACAGAATTAC
Statistics
Matches: 476, Mismatches: 61, Indels: 54
0.81 0.10 0.09
Matches are distributed among these distances:
25 1 0.00
26 131 0.28
27 323 0.68
28 21 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:195922799 original size:53 final size:53
Alignment explanation
Indices: 195922691--195923302 Score: 627
Period size: 53 Copynumber: 11.5 Consensus size: 53
195922681 TTAGTTTACC
* * * * *
195922691 AAATTACTGAAATACCCT-TAGTTGTAAAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACGAAA-TACCCTCGATTTGTA
* * *
195922744 AAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAATACCGTCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTA-CGAAATACCCTCGATTTGTA
* *
195922797 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCGTCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTAC-GAAATACCCTCGATTTGTA
** *
195922850 AAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTC-AGTTTGCA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTA-CGAAATACCCTCGA-TTTGTA
*** * *
195922904 AAATTAATAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGACTTATA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTAC-GAAATACCCTCGATTTGTA
* * * * *
195922958 AAATTACC-AAAGTACCC-CCAGTTTATAAAATTACCCAAATATCCTCTATTTGTA
1 AAATTACCGAAA-TACCCTCGA-TTTGTAAAATTA-CGAAATACCCTCGATTTGTA
*
195923012 AAATTACCGAAATACCGTCGA-TTGTAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTAC-GAAATACCCTCGATTTGTA
* * * * *
195923065 AAATTACC-AAAGTACCCCCAATTTATAAAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCGAAA-TACCCTCGATTTGTAAAATTA-CGAAATACCCTCGATTTGTA
* * * *
195923119 AAATTATCGAAATACCGTTGA-TTGTAAAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTA-CGAAATACCCTCGATTTGTA
* * *
195923172 AAATTACCGAAATACCGTCGA-TTGTAAAATTACTAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTAC-GAAATACCCTCGATTTGTA
* * *
195923225 AAATTACCAAAATACCCTC-AGTTTGCAAAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTAAAATTAC-GAAATACCCTCGATTTGTA
*
195923279 AAATTACC-AAAGTACCCCCGATTT
1 AAATTACCGAAA-TACCCTCGATTT
195923303 ACAGAATTAC
Statistics
Matches: 475, Mismatches: 61, Indels: 45
0.82 0.10 0.08
Matches are distributed among these distances:
52 7 0.01
53 249 0.52
54 203 0.43
55 16 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACGAAATACCCTCGATTTGTA
Found at i:195922929 original size:107 final size:108
Alignment explanation
Indices: 195922691--195923302 Score: 690
Period size: 107 Copynumber: 5.7 Consensus size: 108
195922681 TTAGTTTACC
* * * * *
195922691 AAATTACTGAAATACCCT-TAGTTGTAAAATTAC-CAAAGTACCCTCGATTTATAAAATTACCCA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAA-TACCCTCGATTTGTAAAATTACCAA
* * * * *
195922754 AATATCCTCGATTTGTAAAATTATCGAAATACCGTC-GATTGTA
65 AATACCCTCGATTTGTAAAATTACCCAAATACCCTCAGTTTGTA
* *
195922797 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCGTCGA-TTGTAAAATTACTAAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAA
* * *
195922861 ATACCCTCGATTTGTAAAATTATCGAAATACCCTCAGTTTGCA
66 ATACCCTCGATTTGTAAAATTACCCAAATACCCTCAGTTTGTA
* * * *
195922904 AAATTAATAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGACTTATAAAATTACCAAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAA
* * * *
195922969 GTACCC-CCAGTTTATAAAATTACCCAAATATCCTCTA-TTTGTA
66 ATACCCTCGA-TTTGTAAAATTACCCAAATACCCTC-AGTTTGTA
* *
195923012 AAATTACCGAAATACCGTCGA-TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAA
* * * * *
195923076 GTACCCCCAATTTATAAAATTACCCAAATATCCTC-GATTTGTA
66 ATACCCTCGATTTGTAAAATTACCCAAATACCCTCAG-TTTGTA
* * * *
195923119 AAATTA-TCGAAATACCGTTGA-TTGTAAAATTATTGAAATACCCTCGATTTGTAAAATTACCGA
1 AAATTACT-GAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAA
* ** *
195923182 AATACCGTCGA-TTGTAAAATTACTAAAATACCCTCAATTTGTA
65 AATACCCTCGATTTGTAAAATTACCCAAATACCCTCAGTTTGTA
** * *
195923225 AAATTACCAAAATACCCTC-AGTTTGCAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAA
1 AAATTACTGAAATACCCTCGA-TTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAA
* *
195923289 AGTACCCCCGATTT
65 AATACCCTCGATTT
195923303 ACAGAATTAC
Statistics
Matches: 437, Mismatches: 54, Indels: 28
0.84 0.10 0.05
Matches are distributed among these distances:
105 1 0.00
106 104 0.24
107 262 0.60
108 69 0.16
109 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (108 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAA
ATACCCTCGATTTGTAAAATTACCCAAATACCCTCAGTTTGTA
Found at i:195923364 original size:27 final size:27
Alignment explanation
Indices: 195923342--195923780 Score: 572
Period size: 27 Copynumber: 16.3 Consensus size: 27
195923332 AAAATTATTA
*
195923342 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
195923369 AAATACCCTTGTAGGGTAGAAATATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
195923396 AAATACCCTTGCAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
195923423 AAATACCCCTGTAGAGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
195923450 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
195923477 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
** * *
195923504 AAATACCGTTATAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
195923531 AAATACCTCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
195923558 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
195923585 AAATACCCTTGTAGGGTAGAAATACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
195923612 AAATACGCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
195923639 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
195923666 AAATACCCCTGTAGGATAGAAATATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
195923693 AAATACCCTTATAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
195923720 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
195923747 AAATACCCCTGTAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
195923774 AAATACC
1 AAATACC
195923781 GAAATATCCC
Statistics
Matches: 363, Mismatches: 49, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 363 1.00
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:195923373 original size:348 final size:347
Alignment explanation
Indices: 195922691--195923375 Score: 1016
Period size: 348 Copynumber: 2.0 Consensus size: 347
195922681 TTAGTTTACC
* * *
195922691 AAATTACTGAAATACCCTTAGTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCCAAA
1 AAATTACTGAAATACCCTGAGTTGTAAAATTACCAAAGTACCCCCAATTTATAAAATTACCCAAA
195922756 TATCCTCGATTTGTAAAATTATCGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCGATTT
66 TATCCTCGATTTGTAAAATTATCGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCGATTT
* * * *
195922821 GTAAAATTACTGAAATACCGTCGATTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCG
131 GTAAAATTACCGAAATACCGTCGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCA
* * *
195922886 AAATACCCTCAGTTTGCAAAATTAATAAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCG
196 AAATACCCTCAGTTTGCAAAATTAATAAAATACCCTCGACTTGTAAAATTACTCAAATACCCCCG
* * * * **
195922951 ACTTATAAAATTACCAAAGTACCCCCAGTTTATAAAATTACCCAAATATCCTCTATTTGTAAAAT
261 ACTTACAAAATTACCAAAGTACCCCCAGTTTACAAAATTACCAAAATACCCTCTATGGGTAAAAT
195923016 TACCGAAATACCGTCGATTGTA
326 TACCGAAATACCGTCGATTGTA
*
195923038 AAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAGTACCCCCAATTTATAAAATTACCCAA
1 AAATTACTGAAATACCCT-GAGTTGTAAAATTACCAAAGTACCCCCAATTTATAAAATTACCCAA
* *
195923103 ATATCCTCGATTTGTAAAATTATCGAAATACCGTTGATTGTAAAATTATTGAAATACCCTCGATT
65 ATATCCTCGATTTGTAAAATTATCGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCGATT
195923168 TGTAAAATTACCGAAATACCGTCGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACC
130 TGTAAAATTACCGAAATACCGTCGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACC
* *
195923233 AAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCC
195 AAAATACCCTCAGTTTGCAAAATTAATAAAATACCCTCGACTTGTAAAATTACTCAAA-TACCCC
* * **** * ** *
195923297 CGATTTACAGAATTACCGTTTTACCCTC-GATTTACAAAATTATTAAAATACCC-CTGTAGGGTA
259 CGACTTACAAAATTACCAAAGTACCCCCAG-TTTACAAAATTACCAAAATACCCTCTAT-GGGTA
* *
195923360 GAATTATCGAAATACC
322 AAATTACCGAAATACC
195923376 CTTGTAGGGT
Statistics
Matches: 301, Mismatches: 33, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
347 25 0.08
348 276 0.92
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (347 bp):
AAATTACTGAAATACCCTGAGTTGTAAAATTACCAAAGTACCCCCAATTTATAAAATTACCCAAA
TATCCTCGATTTGTAAAATTATCGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCGATTT
GTAAAATTACCGAAATACCGTCGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCA
AAATACCCTCAGTTTGCAAAATTAATAAAATACCCTCGACTTGTAAAATTACTCAAATACCCCCG
ACTTACAAAATTACCAAAGTACCCCCAGTTTACAAAATTACCAAAATACCCTCTATGGGTAAAAT
TACCGAAATACCGTCGATTGTA
Found at i:195923520 original size:108 final size:108
Alignment explanation
Indices: 195923342--195923780 Score: 716
Period size: 108 Copynumber: 4.1 Consensus size: 108
195923332 AAAATTATTA
*
195923342 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCTTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTG
* *
195923407 CAGGGTAGAAATACCGAAATACCCCTGTAGAGTAGAATTACTG
66 TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTG
* *
195923450 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCGTTA
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTG
*
195923515 TAGGGTAGAAATACCGAAATACCTCTGTAGGGTAGAATTACTG
66 TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTG
* * * *
195923558 AAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACGCTTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTG
195923623 TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTG
66 TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTG
* * * *
195923666 AAATACCCCTGTAGGATAGAAATATCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTG
* * * *
195923731 TAGGGTAGAATTACTGAAATACCCCTGTAGGATAGAATTACCG
66 TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTG
195923774 AAATACC
1 AAATACC
195923781 GAAATATCCC
Statistics
Matches: 306, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 306 1.00
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (108 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTG
TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTG
Found at i:195923750 original size:35 final size:35
Alignment explanation
Indices: 195923711--195923815 Score: 118
Period size: 35 Copynumber: 3.2 Consensus size: 35
195923701 TTATAGGGTA
195923711 GAAATACCGAAATACCCCTGTAGGGTAGAATTA-C
1 GAAATACCGAAATACCCCTGTAGGGTAGAATTACC
*
195923745 ----T---GAAATACCCCTGTAGGATAGAATTACC
1 GAAATACCGAAATACCCCTGTAGGGTAGAATTACC
* *
195923773 GAAATACCGAAATATCCCTATAGGGTAGAATTACC
1 GAAATACCGAAATACCCCTGTAGGGTAGAATTACC
*
195923808 GAGATACC
1 GAAATACC
195923816 CTTGTGGGGT
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
27 24 0.41
28 1 0.02
30 1 0.02
32 1 0.02
35 31 0.53
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (35 bp):
GAAATACCGAAATACCCCTGTAGGGTAGAATTACC
Found at i:195923786 original size:62 final size:62
Alignment explanation
Indices: 195923711--195923834 Score: 176
Period size: 62 Copynumber: 2.0 Consensus size: 62
195923701 TTATAGGGTA
* * *
195923711 GAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGATAGAATTACC
1 GAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGATAAAATTACC
* * * * *
195923773 GAAATACCGAAATATCCCTATAGGGTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGATAAAATTACC
195923835 ATTTTGCCCC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (62 bp):
GAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGATAAAATTACC
Found at i:195927604 original size:18 final size:18
Alignment explanation
Indices: 195927581--195927616 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
195927571 AACGGTAAGC
195927581 TGGCGTGACATGTTAAAT
1 TGGCGTGACATGTTAAAT
195927599 TGGCGTGACATGTTAAAT
1 TGGCGTGACATGTTAAAT
195927617 CATCATTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.33
Consensus pattern (18 bp):
TGGCGTGACATGTTAAAT
Found at i:195927865 original size:7 final size:8
Alignment explanation
Indices: 195927848--195927872 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
195927838 TTTTTGACAA
195927848 TTTATTTT
1 TTTATTTT
195927856 TTTATTTT
1 TTTATTTT
195927864 TTTATTTT
1 TTTATTTT
195927872 T
1 T
195927873 CTTTTATTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTATTTT
Found at i:195936654 original size:46 final size:47
Alignment explanation
Indices: 195936538--195936715 Score: 183
Period size: 46 Copynumber: 3.9 Consensus size: 47
195936528 ATGTAACCGC
* * * *
195936538 CCATAAGTGAACTCGGACTCAACTCAA-GAGCTCGG--GCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGCAT
*
195936583 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG---CAT
* * *
195936633 -C-TCA-CGAACT-GGACTCAACTCAACGAGTTCGGACG-CTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCAT
*
195936675 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC
195936716 CAAATATCCC
Statistics
Matches: 112, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 3 0.03
43 1 0.01
44 2 0.02
45 35 0.31
46 55 0.49
47 8 0.07
48 4 0.04
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGCAT
Found at i:195936703 original size:92 final size:92
Alignment explanation
Indices: 195936546--195936715 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 92
195936536 GCCCATAAGT
* *
195936546 GAACTCGGACTCAACTCAAGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAAGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
195936611 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
195936638 GAACT-GGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAA-GAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
195936702 CGAGTTCGGATGCC
65 CGAGTTCGGATGCC
195936716 CAAATATCCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 13 0.18
92 61 0.82
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAAGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:195936730 original size:46 final size:45
Alignment explanation
Indices: 195936588--195936730 Score: 139
Period size: 46 Copynumber: 3.1 Consensus size: 45
195936578 CGCATCCATA
* *
195936588 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
195936636 A-CGAACT-GGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
195936680 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
195936726 AGTGA
1 AGTGA
195936731 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
42 4 0.05
44 1 0.01
45 5 0.07
46 56 0.74
47 5 0.07
48 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:195939134 original size:30 final size:30
Alignment explanation
Indices: 195939090--195939178 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
195939080 CAAAGATAAC
195939090 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
195939119 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
195939149 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
195939179 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:195939138 original size:15 final size:15
Alignment explanation
Indices: 195939090--195939169 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
195939080 CAAAGATAAC
*
195939090 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
195939104 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
195939119 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
195939134 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
195939149 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
195939164 AAGAAA
1 AAGAAA
195939170 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:195939178 original size:15 final size:15
Alignment explanation
Indices: 195939101--195939178 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
195939091 AGAAAACCGA
195939101 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
195939116 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
195939130 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
195939145 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
195939161 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
195939176 ATA
1 ATA
195939179 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:195943845 original size:40 final size:39
Alignment explanation
Indices: 195943800--195944007 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
195943790 CGGAATACAA
*
195943800 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
195943840 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
195943880 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
195943920 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
195943960 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
195944000 CCGGATAT
1 CCGGATAT
195944008 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:195943940 original size:80 final size:81
Alignment explanation
Indices: 195943800--195944005 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
195943790 CGGAATACAA
* * *
195943800 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
195943864 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
195943880 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
195943943 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
195943960 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
195944006 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:195946944 original size:13 final size:13
Alignment explanation
Indices: 195946926--195946950 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
195946916 TAATGGTATA
195946926 TTGAATCCATGAT
1 TTGAATCCATGAT
195946939 TTGAATCCATGA
1 TTGAATCCATGA
195946951 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:195948518 original size:48 final size:48
Alignment explanation
Indices: 195948459--195948762 Score: 325
Period size: 48 Copynumber: 6.6 Consensus size: 48
195948449 AAAGTGTAAT
195948459 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
195948507 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* ** * *
195948555 TATGTGGTAAAGCCGAAT-AC--ATGTGTGAT--ATGTAT-ATGTGGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATAT-GTA
* ** * * * * * *
195948598 -AAGCCG-AATGGCTAAT-G-TGAA-AT-ACAT--GTGTGT--TATGTA
1 TATGTGGTAAAGCCGAATGGCT-AATGTGAAATACATGTGTGATATGTA
195948637 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
195948685 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
195948733 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
195948763 TGTTGTAACA
Statistics
Matches: 211, Mismatches: 31, Indels: 28
0.78 0.11 0.10
Matches are distributed among these distances:
39 3 0.01
40 5 0.02
41 20 0.09
42 10 0.05
43 11 0.05
44 3 0.01
45 7 0.03
46 5 0.02
47 1 0.00
48 146 0.69
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:195948574 original size:34 final size:34
Alignment explanation
Indices: 195948536--195948606 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
195948526 GCTAATGTGA
195948536 AATACATGTGTGATATGTATATGTGGTAAAGCCG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCG
195948570 AATACATGTGTGATATGTATATGTGGTAAAGCCG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCG
195948604 AAT
1 AAT
195948607 GGCTAATGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.32
Consensus pattern (34 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCG
Found at i:195948574 original size:82 final size:82
Alignment explanation
Indices: 195948488--195948750 Score: 364
Period size: 82 Copynumber: 3.0 Consensus size: 82
195948478 GCTAATGTGA
195948488 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
195948553 TATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCG
*
195948570 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
195948635 TATATGTGGTAAAGCCGAATGGCTAATG
66 TATATGTGGTAAAG-C------C----G
* *
195948663 TGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGAT
1 ---AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGAT
*
195948728 ATGAATATGTGGTAAAGCCG
63 ATGTATATGTGGTAAAGCCG
195948748 AAT
1 AAT
195948751 GGCTAATGTG
Statistics
Matches: 162, Mismatches: 5, Indels: 28
0.83 0.03 0.14
Matches are distributed among these distances:
82 81 0.50
83 1 0.01
85 1 0.01
89 2 0.01
93 1 0.01
95 1 0.01
96 75 0.46
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.32
Consensus pattern (82 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
TATATGTGGTAAAGCCG
Found at i:195948647 original size:130 final size:130
Alignment explanation
Indices: 195948459--195948702 Score: 470
Period size: 130 Copynumber: 1.9 Consensus size: 130
195948449 AAAGTGTAAT
195948459 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
*
195948524 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATACATGTGTGATATGTA
66 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATACATGTGTGATATGTA
*
195948589 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
195948654 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAAT
66 TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAAT
195948703 GGCTAATGTG
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 112 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (130 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
TGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAGAATACATGTGTGATATGTA
Found at i:195948857 original size:37 final size:37
Alignment explanation
Indices: 195948807--195948892 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
195948797 GGAAATGTAT
*
195948807 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
195948844 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
195948881 TCCGGGTAAGAC
1 TCCGGGTAAGAC
195948893 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
Found at i:195950851 original size:40 final size:40
Alignment explanation
Indices: 195950805--195951065 Score: 255
Period size: 40 Copynumber: 6.5 Consensus size: 40
195950795 TGAATGATAC
**
195950805 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * *
195950845 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
195950885 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* *
195950925 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
195950964 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * **
195951004 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
195951044 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
195951066 ATCATGCTGG
Statistics
Matches: 195, Mismatches: 18, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
39 24 0.12
40 165 0.85
41 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:195953228 original size:13 final size:13
Alignment explanation
Indices: 195953210--195953234 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
195953200 TAATGGTATA
195953210 TTGAATCCATGAT
1 TTGAATCCATGAT
195953223 TTGAATCCATGA
1 TTGAATCCATGA
195953235 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:195954802 original size:48 final size:48
Alignment explanation
Indices: 195954743--195955223 Score: 416
Period size: 48 Copynumber: 10.6 Consensus size: 48
195954733 AAAGTGTAAT
195954743 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
195954791 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG-A
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
195954838 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* ** * *
195954886 TATGTGGTAAAGCCGAAT-AC--ATGTGTGAT--ATGTAT-ATGTGGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATAT-GTA
* ** * * * * * *
195954929 -AAGCCG-AATGGCTAAT-G-TGAA-AT-ACAT--GTGT--GATATGTA
1 TATGTGGTAAAGCCGAATGGCT-AATGTGAAATACATGTGTGATATGTA
195954968 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* ** * *
195955016 TATGTGGTAAAGCCGAAT-AC--ATGTGTGAT--ATGTAT-ATGTGGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATAT-GTA
* ** * * * * * *
195955059 -AAGCCG-AATGGCTAAT-G-TGAA-AT-ACAT--GTGTGT--TATGTA
1 TATGTGGTAAAGCCGAATGGCT-AATGTGAAATACATGTGTGATATGTA
195955098 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
195955146 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
195955194 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
195955224 TGTTGTAACA
Statistics
Matches: 346, Mismatches: 57, Indels: 60
0.75 0.12 0.13
Matches are distributed among these distances:
39 6 0.02
40 11 0.03
41 39 0.11
42 20 0.06
43 22 0.06
44 6 0.02
45 14 0.04
46 8 0.02
47 49 0.14
48 171 0.49
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:195954866 original size:82 final size:82
Alignment explanation
Indices: 195954820--195955163 Score: 277
Period size: 82 Copynumber: 4.0 Consensus size: 82
195954810 GCTAATGTGA
* *
195954820 AATACATGTGTGATATG-ATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATAAG
* *
195954884 TATATGTGGTAAAGCCG
66 GATATGTGCTAAAGCCG
* *
195954901 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATAAG
* *
195954966 TATATGTGGTAAAGCCGAATGGCTAATG
66 GATATGTGCTAAAG-C------C----G
* * * ** *
195954994 TGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAAT-AC-ATGTGTGATATGTATATGTGG
1 ---AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTA-ATGTGAAATACATATGTGA
* *
195955057 TAAAGCCGA-ATG-GCTAATG-TG
62 T-AAG--GATATGTGCTAAAGCCG
* * *
195955078 AAATACATGTGTGTTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATAT
1 -AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATAA
* * *
195955143 GTATATGTGGTAAAGCAG
65 GGATATGTGCTAAAGCCG
195955161 AAT
1 AAT
195955164 GGCTAATGTG
Statistics
Matches: 214, Mismatches: 25, Indels: 47
0.75 0.09 0.16
Matches are distributed among these distances:
80 1 0.00
81 20 0.09
82 108 0.50
83 17 0.08
84 2 0.01
89 1 0.00
93 1 0.00
94 1 0.00
95 15 0.07
96 44 0.21
97 3 0.01
98 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (82 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGTGATAAG
GATATGTGCTAAAGCCG
Found at i:195955031 original size:130 final size:130
Alignment explanation
Indices: 195954772--195955163 Score: 759
Period size: 130 Copynumber: 3.0 Consensus size: 130
195954762 GCTAATGTGA
195954772 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
195954837 -ATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
195954901 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
195954966 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
*
195955031 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATG
1 AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
195955096 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCAG
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
195955161 AAT
1 AAT
195955164 GGCTAATGTG
Statistics
Matches: 260, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
129 65 0.25
130 195 0.75
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (130 bp):
AATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCG
Found at i:195955316 original size:36 final size:37
Alignment explanation
Indices: 195955268--195955351 Score: 145
Period size: 35 Copynumber: 2.3 Consensus size: 37
195955258 GGAAATGTAT
*
195955268 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
195955305 TCC-GGTAAGA-CCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
195955340 TCCGGGTAAGAC
1 TCCGGGTAAGAC
195955352 TTCGTAATAA
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
35 27 0.61
36 14 0.32
37 3 0.07
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
Found at i:195962514 original size:40 final size:39
Alignment explanation
Indices: 195962469--195962675 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
195962459 CGGAATACAA
*
195962469 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
195962509 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
195962549 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
** * *
195962589 CCGGAT-TAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
195962628 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
195962668 CCGGATAT
1 CCGGATAT
195962676 CATTCAATTG
Statistics
Matches: 142, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
38 1 0.01
39 31 0.22
40 110 0.77
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:195962658 original size:79 final size:81
Alignment explanation
Indices: 195962469--195962673 Score: 238
Period size: 79 Copynumber: 2.6 Consensus size: 81
195962459 CGGAATACAA
* * *
195962469 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAA
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAA
*
195962532 TGCCTTCGGGTATTAGC
65 TGCCTTCGGGTATTAAC
* * * * *
195962549 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAG-TC-ACTAGCACAATT
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
195962612 GCCTTCGGGTCTTAAC
66 GCCTTCGGGTATTAAC
** * * *
195962628 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGAT
195962674 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 62 0.58
80 42 0.39
81 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:195965344 original size:40 final size:40
Alignment explanation
Indices: 195965299--195965465 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
195965289 CGGAATATAA
195965299 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
195965339 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
195965379 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
195965419 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
195965458 CCGGATAT
1 CCGGATAT
195965466 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:195965449 original size:80 final size:79
Alignment explanation
Indices: 195965315--195965465 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
195965305 ATAATCACGT
*
195965315 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
195965380 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
195965395 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
195965458 CCGGATAT
64 CCGGATAT
195965466 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:195973349 original size:40 final size:40
Alignment explanation
Indices: 195973304--195973470 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
195973294 CGGAATATAA
195973304 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
195973344 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
195973384 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
195973424 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
195973463 CCGGATAT
1 CCGGATAT
195973471 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:195973454 original size:80 final size:79
Alignment explanation
Indices: 195973320--195973470 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
195973310 ATAATCACGT
*
195973320 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
195973385 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
195973400 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
195973463 CCGGATAT
64 CCGGATAT
195973471 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:195977544 original size:29 final size:29
Alignment explanation
Indices: 195977509--195977645 Score: 127
Period size: 29 Copynumber: 4.7 Consensus size: 29
195977499 CTACTCGATT
* *
195977509 TCGCACACTTAGTGCCACGTAATTT-AAGC
1 TCGCACACTTAGTGCCA-ATAATTTCCAGC
** **
195977538 TCGCACACACAGTGCCATATTTTTTTCCAGC
1 TCGCACACTTAGTGCCA-A-TAATTTCCAGC
*
195977569 TTGCACACTTAGTGCCAA-ATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
195977598 ACGCACACTTAGTGCC-ATATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
195977627 ACGCACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
195977646 CTCGACACCA
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
28 1 0.01
29 64 0.72
30 7 0.08
31 17 0.19
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
TCGCACACTTAGTGCCAATAATTTCCAGC
Found at i:195977585 original size:60 final size:58
Alignment explanation
Indices: 195977510--195977644 Score: 155
Period size: 60 Copynumber: 2.3 Consensus size: 58
195977500 TACTCGATTT
** * * *
195977510 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATATTTTTTTCCAGCT
1 CGCACACTTAGTGCCAAAT-ATTTCAAGCACGCACACACAGTGCCATA--TATTTCCAGCA
* * **
195977570 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
195977628 CGCACACTTAGTGCCAA
1 CGCACACTTAGTGCCAA
195977645 TCTCGACACC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
58 25 0.39
59 4 0.06
60 35 0.55
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
Found at i:195985609 original size:29 final size:29
Alignment explanation
Indices: 195985574--195985709 Score: 134
Period size: 29 Copynumber: 4.7 Consensus size: 29
195985564 CTACTCGATT
* *
195985574 TCGCACACTTAGTGCCACGTAATTT-AAGC
1 TCGCACACTTAGTGCCA-ATAATTTCCAGC
** **
195985603 TCGCACACACAGTGCCATATTTTTTCCAGC
1 TCGCACACTTAGTGCCA-ATAATTTCCAGC
*
195985633 TTGCACACTTAGTGCCAA-ATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
195985662 ACGCACACTTAGTGCC-ATATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
195985691 ACGCACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
195985710 CTCGACACCA
Statistics
Matches: 89, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
28 1 0.01
29 69 0.78
30 19 0.21
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
TCGCACACTTAGTGCCAATAATTTCCAGC
Found at i:195985643 original size:59 final size:58
Alignment explanation
Indices: 195985575--195985708 Score: 162
Period size: 59 Copynumber: 2.3 Consensus size: 58
195985565 TACTCGATTT
** * * *
195985575 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATATTTTTTCCAGCT
1 CGCACACTTAGTGCCAAAT-ATTTCAAGCACGCACACACAGTGCCATA-TATTTCCAGCA
* * **
195985634 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
195985692 CGCACACTTAGTGCCAA
1 CGCACACTTAGTGCCAA
195985709 TCTCGACACC
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
58 29 0.45
59 35 0.55
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
Found at i:195993725 original size:27 final size:28
Alignment explanation
Indices: 195993692--195993761 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
195993682 ATAGTGATTC
195993692 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
195993719 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
195993747 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
195993762 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:195995670 original size:40 final size:39
Alignment explanation
Indices: 195995617--195995807 Score: 165
Period size: 40 Copynumber: 4.8 Consensus size: 39
195995607 GGATATAACG
* *
195995617 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAGCCCGGTT-TAGTA
*
195995657 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGAC-TAAGCCC-GGTTTAGTA
* *
195995697 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAGCCCGG-TTTAGTA
* * * * * * *
195995736 ACTCGCACGAACGCCTTC-GGATCTTAGTCTGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTAAGCCCGG-TTTAGTA
* *
195995776 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTAAGCCCGG
195995808 ACATCATTCA
Statistics
Matches: 126, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
38 6 0.05
39 26 0.21
40 78 0.62
41 16 0.13
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTAAGCCCGGTTTAGTA
Found at i:195995727 original size:79 final size:80
Alignment explanation
Indices: 195995591--195995808 Score: 223
Period size: 79 Copynumber: 2.8 Consensus size: 80
195995581 GAATCACGTA
*** * **
195995591 CCTTCGGAAT-TTAA-CCGGATATAACGACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTAT
1 CCTTCGG-ATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-T
*
195995653 AGTAACTCGCACGAATG
64 AGTAACTCGCACGAACG
* *
195995670 CCTTCGGGA-CTTAACCCGGGTTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTA
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
*
195995733 TTAACTCGCACGAACG
65 GTAACTCGCACGAACG
** * * *
195995749 CCTTCGGATCTTAGTCTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
195995809 CATCATTCAA
Statistics
Matches: 115, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
78 3 0.03
79 62 0.54
80 50 0.43
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAG
TAACTCGCACGAACG
Found at i:196001288 original size:44 final size:43
Alignment explanation
Indices: 196001238--196001324 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 43
196001228 ACATTAAGTT
*
196001238 CATTTCAGTAATGTGGAATTGGAATGTTCTAGCGTGGTGTGAAA
1 CATTTCAGTAATGTGGAATTGGAATGTTCTAGAGT-GTGTGAAA
196001282 CATTTCAGTAATGTGGAATTGGAATGTTCTAGAGTGTGTGAAA
1 CATTTCAGTAATGTGGAATTGGAATGTTCTAGAGTGTGTGAAA
196001325 TTGAAACAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 8 0.19
44 34 0.81
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (43 bp):
CATTTCAGTAATGTGGAATTGGAATGTTCTAGAGTGTGTGAAA
Found at i:196005729 original size:93 final size:93
Alignment explanation
Indices: 196005617--196005787 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
196005607 GCCCATAAGT
* *
196005617 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
196005682 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
196005710 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
196005775 CGAGTTCGGATGC
66 CGAGCTCGGATGC
196005788 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:196005784 original size:46 final size:46
Alignment explanation
Indices: 196005609--196005784 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
196005599 TGTAACCCGC
* *
196005609 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
196005655 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
196005705 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
196005748 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
196005785 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 65 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:196013764 original size:29 final size:29
Alignment explanation
Indices: 196013674--196013833 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
196013664 ACTCGATTTC
* * **
196013674 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
196013703 GCACACGTAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
196013731 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
196013761 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
196013790 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
196013819 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
196013834 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:196020557 original size:40 final size:40
Alignment explanation
Indices: 196020474--196020626 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
196020464 TCGAATGATG
* *
196020474 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
196020514 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* * **
196020554 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
196020595 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
196020627 CGCTATATCC
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
39 2 0.02
40 79 0.86
41 11 0.12
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:196023292 original size:65 final size:65
Alignment explanation
Indices: 196023188--196023383 Score: 374
Period size: 65 Copynumber: 3.0 Consensus size: 65
196023178 CCCCTAGGGT
*
196023188 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATTCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
196023253 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
*
196023318 TAAGGTTGACCTGAATGCATGTTTAACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
196023383 T
1 T
196023384 GCATGGGACT
Statistics
Matches: 129, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 129 1.00
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:196023304 original size:30 final size:29
Alignment explanation
Indices: 196023270--196023370 Score: 71
Period size: 30 Copynumber: 3.2 Consensus size: 29
196023260 GACCTGAATG
196023270 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTT-ACTGTTACTATTTACTGCATGC
* * *
196023300 CATG-TTATTATTATCTGATAAGGTTGACCTGAATG-
1 CATGTTTACTGTTA-CT-AT----TT-A-CTGCATGC
196023335 CATGTTTAACTGTTACTATTTACTGCATGC
1 CATGTTT-ACTGTTACTATTTACTGCATGC
196023365 CATGTT
1 CATGTT
196023371 ATTATTATCT
Statistics
Matches: 54, Mismatches: 6, Indels: 22
0.66 0.07 0.27
Matches are distributed among these distances:
28 5 0.09
29 10 0.19
30 13 0.24
31 2 0.04
34 2 0.04
35 7 0.13
36 10 0.19
37 5 0.09
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.43
Consensus pattern (29 bp):
CATGTTTACTGTTACTATTTACTGCATGC
Found at i:196030224 original size:28 final size:28
Alignment explanation
Indices: 196030159--196030259 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
196030149 ATAGTGAATC
*
196030159 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
196030188 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
196030216 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
196030246 CGCACACTTAGTGC
1 CGCACACTTAGTGC
196030260 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:196037467 original size:2 final size:2
Alignment explanation
Indices: 196037460--196037485 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
196037450 ATCGGGTATG
196037460 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
196037486 AGTATGCCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:196037968 original size:24 final size:24
Alignment explanation
Indices: 196037936--196038140 Score: 315
Period size: 24 Copynumber: 8.6 Consensus size: 24
196037926 TATCTCAAAT
196037936 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
196037960 GCACTATGTGTGCGATT-ACTATG
1 GCACTATGTGTGCGATTCACTATG
196037983 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
196038007 GCACTATGTGTGCGATT-ACTATG
1 GCACTATGTGTGCGATTCACTATG
196038030 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
*
196038054 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATG
* * *
196038078 GCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTCACTATG
* ** *
196038102 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTCACTATG
*
196038126 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
196038141 ACATAATAAG
Statistics
Matches: 172, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
23 46 0.27
24 126 0.73
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTCACTATG
Found at i:196037990 original size:47 final size:48
Alignment explanation
Indices: 196037936--196038140 Score: 333
Period size: 47 Copynumber: 4.3 Consensus size: 48
196037926 TATCTCAAAT
196037936 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA-TTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
196037983 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA-TTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
196038030 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
* * * * * *
196038078 GCACTAAGTGTGCGATTTACTATAGCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
*
196038126 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
196038141 ACATAATAAG
Statistics
Matches: 149, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
47 86 0.58
48 63 0.42
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
Done.