Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 627 of 770
Found at i:196599321 original size:93 final size:93
Alignment explanation
Indices: 196599209--196599380 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
196599199 CGCCCATAAG
* *
196599209 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
196599274 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
196599302 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
196599367 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
196599381 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:196599377 original size:46 final size:46
Alignment explanation
Indices: 196599202--196599377 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
196599192 TGTAACCCGC
* * *
196599202 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
196599248 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
196599298 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
196599341 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
196599378 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:196602465 original size:13 final size:13
Alignment explanation
Indices: 196602447--196602471 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
196602437 ACAAACGATA
196602447 AAATTTTCACACG
1 AAATTTTCACACG
196602460 AAATTTTCACAC
1 AAATTTTCACAC
196602472 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:196604092 original size:24 final size:24
Alignment explanation
Indices: 196604049--196604098 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
196604039 AATAAGATTT
*
196604049 AATATTAAATTTAATCTAATATTA
1 AATATTAAATTAAATCTAATATTA
* *
196604073 AATATTAGATTAAATTTAATATTA
1 AATATTAAATTAAATCTAATATTA
196604097 AA
1 AA
196604099 GTGATTTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (24 bp):
AATATTAAATTAAATCTAATATTA
Found at i:196609914 original size:27 final size:27
Alignment explanation
Indices: 196609866--196609976 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
196609856 AGCATGGTTG
* *
196609866 CCAGAACAGATA-ATGTGACAGAGCCA
1 CCAGAACAGAAATATGTGGCAGAGCCA
*
196609892 CTAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGAAATATGTGGCAGAGCCA
*
196609919 CCAGAACAGAAATATATGGCAGAGCCA
1 CCAGAACAGAAATATGTGGCAGAGCCA
* *
196609946 CCAGATCAGATAAT-TGTGGCATAGCCA
1 CCAGAACAGA-AATATGTGGCAGAGCCA
196609973 CCAG
1 CCAG
196609977 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
26 10 0.13
27 62 0.83
28 3 0.04
ACGTcount: A:0.40, C:0.23, G:0.23, T:0.14
Consensus pattern (27 bp):
CCAGAACAGAAATATGTGGCAGAGCCA
Found at i:196617724 original size:27 final size:26
Alignment explanation
Indices: 196617687--196617772 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 26
196617677 AGCATGGCTG
* *
196617687 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
196617713 CCAGATACAGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
196617741 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
196617768 CCAGA
1 CCAGA
196617773 TCATATAAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 5 0.10
27 31 0.60
28 16 0.31
ACGTcount: A:0.41, C:0.23, G:0.23, T:0.13
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:196635185 original size:22 final size:22
Alignment explanation
Indices: 196635155--196635213 Score: 100
Period size: 22 Copynumber: 2.7 Consensus size: 22
196635145 CATGAGCTGA
*
196635155 TAAATAGTAAGCTCTATGGAGC
1 TAAACAGTAAGCTCTATGGAGC
*
196635177 TAAACAGTAAGCTTTATGGAGC
1 TAAACAGTAAGCTCTATGGAGC
196635199 TAAACAGTAAGCTCT
1 TAAACAGTAAGCTCT
196635214 TTTGAGCTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.27
Consensus pattern (22 bp):
TAAACAGTAAGCTCTATGGAGC
Found at i:196635220 original size:22 final size:22
Alignment explanation
Indices: 196635155--196635221 Score: 91
Period size: 22 Copynumber: 3.0 Consensus size: 22
196635145 CATGAGCTGA
* *
196635155 TAAATAGTAAGCTCTATGGAGC
1 TAAACAGTAAGCTCTTTGGAGC
196635177 TAAACAGTAAGCT-TTATGGAGC
1 TAAACAGTAAGCTCTT-TGGAGC
*
196635199 TAAACAGTAAGCTCTTTTGAGC
1 TAAACAGTAAGCTCTTTGGAGC
196635221 T
1 T
196635222 GAATCTGAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
21 1 0.03
22 37 0.93
23 2 0.05
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (22 bp):
TAAACAGTAAGCTCTTTGGAGC
Found at i:196637194 original size:42 final size:42
Alignment explanation
Indices: 196637143--196637257 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 42
196637133 GAGTTTCCAA
* *
196637143 ATAAGACCATATCAGGGATATGGCATTGGTATG-TGATTTCGT
1 ATAAGACCATATCAGGGATATGGCATTGATATGAT-ATTTCAT
* * * * * *
196637185 ATATGACCATGTTAGGGACATGGAATCGATATGATATTTCAT
1 ATAAGACCATATCAGGGATATGGCATTGATATGATATTTCAT
* * *
196637227 GTAAGACCATATCTGAGATATGGCATTGATA
1 ATAAGACCATATCAGGGATATGGCATTGATA
196637258 CAGTTTTATG
Statistics
Matches: 55, Mismatches: 17, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
42 54 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.32
Consensus pattern (42 bp):
ATAAGACCATATCAGGGATATGGCATTGATATGATATTTCAT
Found at i:196639573 original size:48 final size:47
Alignment explanation
Indices: 196639502--196639773 Score: 210
Period size: 48 Copynumber: 5.6 Consensus size: 47
196639492 TATGTGTGCT
*
196639502 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAG-C
* **** * *
196639550 AGTGTATGACCATGTCTGGGACATGGCATCGGTGTTGA-TATGTGTGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CCACATTATGAGAGC
* * * *
196639597 TAGTGTACGACCATGTCTGGGACATGGCATCGGCCTCAATATGCGAGC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGC
* * * * ** *
196639645 TAGTGTAAAACCATGTTTGGAACATGGCATCAG-CATTGTTAT-ATGTGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CATTATGA-GAG-C
* *
196639694 AGTGTAAGACCATGTCTTGGACATGGCATC-GACACCGATGTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C-AT-TATGAGAG-C
* *
196639744 AATGTAAGACCATGTCTGAGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
196639774 AGCATTTTAC
Statistics
Matches: 177, Mismatches: 37, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
47 5 0.03
48 135 0.76
49 3 0.02
50 33 0.19
51 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGC
Found at i:196639651 original size:96 final size:97
Alignment explanation
Indices: 196639487--196639775 Score: 338
Period size: 96 Copynumber: 3.0 Consensus size: 97
196639477 AAGACATTTG
* *
196639487 GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAG-TCA
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CAATATGAGAGCT-A
*
196639551 GTGTATGACCATGTCTGGGACATGGCATC-G-GT
64 GTGTAAGACCATGTCTGGGACATGGCATCAGAGT
* *
196639583 GTTGATATGTGTGCTAGTGTACGACCATGTCTGGGACATGGCATCGGCCTCAATATGCGAGCTAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CAATATGAGAGCTAG
* * * *
196639648 TGTAAAACCATGTTTGGAACATGGCATCAGCATT
65 TGTAAGACCATGTCTGGGACATGGCATCAG-AGT
* * * *
196639682 GTT-ATATGTGT-C-AGTGTAAGACCATGTCTTGGACATGGCATCGACACCGATGTATGAGAGCC
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CC-A-ATATGAGAGCT
* *
196639744 AATGTAAGACCATGTCTGAGACATGGCATCAG
63 AGTGTAAGACCATGTCTGGGACATGGCATCAG
196639776 CATTTTACCC
Statistics
Matches: 165, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
96 113 0.68
97 5 0.03
98 43 0.26
99 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (97 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCAATATGAGAGCTAGT
GTAAGACCATGTCTGGGACATGGCATCAGAGT
Found at i:196646787 original size:40 final size:40
Alignment explanation
Indices: 196646741--196646842 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 40
196646731 CTGAAGGCAT
* *
196646741 TCGTGCGAGTTATTA-AATCCGGGCTAAT-TCCCGAAGACAA
1 TCGTGCGAGTCACTATAA-CCGGGCT-ATGTCCCGAAGACAA
* *
196646781 TTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAA
1 TCGTGCGAGTCACTATAACCGGGCTATGTCCCGAAGACAA
* * *
196646821 TCGAGCGAGTCGCTATATCCGG
1 TCGTGCGAGTCACTATAACCGG
196646843 TTAAATTCCA
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.04
40 47 0.92
41 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.24
Consensus pattern (40 bp):
TCGTGCGAGTCACTATAACCGGGCTATGTCCCGAAGACAA
Found at i:196655357 original size:27 final size:27
Alignment explanation
Indices: 196655327--196655395 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
196655317 ATAGTGAATC
*
196655327 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTAT-AAATCAAACT
* * *
196655354 CGCACACATAGTGCTATATATCAAATT
1 CGCACACTTAGTGCTATAAATCAAACT
196655381 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
196655396 GTACAATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
26 4 0.11
27 32 0.89
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAATCAAACT
Found at i:196655467 original size:42 final size:42
Alignment explanation
Indices: 196655403--196655509 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
196655393 GCTGTACAAT
* *
196655403 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
196655445 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
196655487 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
196655510 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:196659181 original size:40 final size:40
Alignment explanation
Indices: 196659096--196659279 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
196659086 GCTACTCGTT
* *
196659096 CAAATGCCTTCGGGACATA-CTC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
196659135 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
196659175 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
196659214 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
196659255 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
196659280 CATCATTCGA
Statistics
Matches: 127, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.02
39 51 0.40
40 59 0.46
41 15 0.12
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:196659208 original size:79 final size:80
Alignment explanation
Indices: 196659123--196659279 Score: 221
Period size: 79 Copynumber: 2.0 Consensus size: 80
196659113 TACTCGATTA
* * *
196659123 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTC
196659186 GGG-CTTAGCCCGGAAT
64 GGGACTTAGCCCGGAAT
** *
196659202 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
196659267 GACTTAGCCCGGA
66 GACTTAGCCCGGA
196659280 CATCATTCGA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
78 3 0.04
79 51 0.74
80 15 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:196662581 original size:51 final size:49
Alignment explanation
Indices: 196662414--196662639 Score: 274
Period size: 50 Copynumber: 4.6 Consensus size: 49
196662404 ATCTAGTATG
*
196662414 CATAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
* * * * * ** * *
196662463 CGTAGTATCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACA
* * * * *
196662513 CGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACA
196662564 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
*
196662613 -GTAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
196662640 CATGACCTCA
Statistics
Matches: 151, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
48 26 0.17
49 41 0.27
50 45 0.30
51 39 0.26
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
Found at i:196662643 original size:101 final size:99
Alignment explanation
Indices: 196662416--196662639 Score: 290
Period size: 99 Copynumber: 2.3 Consensus size: 99
196662406 CTAGTATGCA
* * *
196662416 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTATCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTACACTTA
* *
196662481 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCCGATACACG
* * * * *
196662515 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACATAGTAGCCTACACT
* ** *
196662580 TAGTACTACACATGCGACC-AATTATCCGGTACA-G
64 TAGTACTACACACGCGACCTAACCATCCGATACACG
196662614 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
196662640 CATGACCTCA
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 56 0.51
100 13 0.12
101 40 0.37
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTACACTTA
GTACTACACACGCGACCTAACCATCCGATACACG
Found at i:196668074 original size:40 final size:39
Alignment explanation
Indices: 196667968--196668096 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
196667958 TGCTGGAAAT
* * * *
196667968 TATATCCGGGTTAAGACCCGAAGGCAAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
196668008 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
196668048 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
196668088 TATATCCGG
1 TATATCCGG
196668097 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 3 0.04
40 72 0.94
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:196671256 original size:20 final size:21
Alignment explanation
Indices: 196671222--196671261 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
196671212 TAACTCAAAG
196671222 TATAAATATTTTTTCAATTTT
1 TATAAATATTTTTTCAATTTT
196671243 TATAAATA-TTTTTCAATTT
1 TATAAATATTTTTTCAATTT
196671262 AAAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (21 bp):
TATAAATATTTTTTCAATTTT
Found at i:196674997 original size:13 final size:13
Alignment explanation
Indices: 196674979--196675004 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
196674969 CAAAATCATA
196674979 ATTATAATAATTT
1 ATTATAATAATTT
196674992 ATTATAATAATTT
1 ATTATAATAATTT
196675005 CGGTAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:196678356 original size:40 final size:40
Alignment explanation
Indices: 196678301--196678510 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
196678291 AACATTGGAA
196678301 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
196678341 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
196678381 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
196678421 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
196678460 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
196678501 CTATATCCGG
1 ATATATCCGG
196678511 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:196686492 original size:40 final size:40
Alignment explanation
Indices: 196686437--196686646 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
196686427 AACATTGGAA
196686437 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
196686477 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
196686517 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
196686557 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
196686596 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
196686637 CTATATCCGG
1 ATATATCCGG
196686647 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:196692201 original size:24 final size:24
Alignment explanation
Indices: 196692174--196692333 Score: 281
Period size: 24 Copynumber: 6.8 Consensus size: 24
196692164 CTTATTATGT
**
196692174 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
196692198 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
196692222 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
196692246 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
196692270 TCGCACACATAGTGCCATAGT--A
1 TCGCACACATAGTGCCATAGTAAA
196692292 TCGCACACATAGTGCCATA-TAAA
1 TCGCACACATAGTGCCATAGTAAA
196692315 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
196692334 TAATTCCAGC
Statistics
Matches: 132, Mismatches: 2, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
21 1 0.01
22 20 0.15
23 20 0.15
24 91 0.69
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:196699947 original size:24 final size:24
Alignment explanation
Indices: 196699920--196700034 Score: 212
Period size: 24 Copynumber: 4.8 Consensus size: 24
196699910 CTTATTATGT
**
196699920 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
196699944 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
196699968 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
196699992 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
196700016 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
196700035 TAATTCCAGC
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 89 1.00
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:196703304 original size:27 final size:27
Alignment explanation
Indices: 196703248--196703304 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 27
196703238 ATCTTGGTAC
* *
196703248 CTAATCTATTTTTGGTCACAAGTGGTAT
1 CTAAACTATTTTT-GTCACAAGTGGCAT
*
196703276 CTAAACTATTTTT-TCTCAAGTTGGCAT
1 CTAAACTATTTTTGTCACAAG-TGGCAT
196703303 CT
1 CT
196703305 CCATTAGTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 6 0.24
27 7 0.28
28 12 0.48
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.44
Consensus pattern (27 bp):
CTAAACTATTTTTGTCACAAGTGGCAT
Found at i:196705254 original size:2 final size:2
Alignment explanation
Indices: 196705247--196705280 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
196705237 TAGAAATTAA
196705247 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
196705281 TGTTATATCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:196705775 original size:2 final size:2
Alignment explanation
Indices: 196705768--196705803 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
196705758 AAGAATCAAC
196705768 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
196705804 GTATGCTTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:196710559 original size:48 final size:48
Alignment explanation
Indices: 196710498--196710691 Score: 150
Period size: 48 Copynumber: 4.1 Consensus size: 48
196710488 TATCGGGATA
* *
196710498 TGGCGTTGATATGAGATCCCATGTAAGACCATGTTTGGGACATGGCAT
1 TGGCATTGATATGAGATCCCATATAAGACCATGTTTGGGACATGGCAT
* *
196710546 TGGCATTGATATGAGA-CATCATATAAGACCATAG-CTGGG-CTATCGGC-T
1 TGGCATTGATATGAGATC-CCATATAAGACCAT-GTTTGGGAC-AT-GGCAT
* * * * *
196710594 TCG-A-T-ATGTGCGATCCCATGTAAGACCATGTTTGGGGCATGGCAT
1 TGGCATTGATATGAGATCCCATATAAGACCATGTTTGGGACATGGCAT
** * * *** *
196710639 TGGCATCAATATGTGGTCCCATATAAGACCATACATGGGATATGGCAT
1 TGGCATTGATATGAGATCCCATATAAGACCATGTTTGGGACATGGCAT
196710687 TGGCA
1 TGGCA
196710692 CCTTATTATG
Statistics
Matches: 114, Mismatches: 21, Indels: 22
0.73 0.13 0.14
Matches are distributed among these distances:
44 4 0.04
45 27 0.24
46 4 0.04
47 3 0.03
48 72 0.63
49 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (48 bp):
TGGCATTGATATGAGATCCCATATAAGACCATGTTTGGGACATGGCAT
Found at i:196710573 original size:89 final size:91
Alignment explanation
Indices: 196710419--196710681 Score: 257
Period size: 93 Copynumber: 2.9 Consensus size: 91
196710409 ATTTGGGTTG
* * * * * * ** * ** *
196710419 ATGAGATCCCGTATAAGAGCATATATGGGATATGGCATCAGCATCGATATGTGTTATCATGTAAG
1 ATGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGAGACATCATATAAG
*
196710484 ACCATATC-GGGATAT-GGCGTT-GAT
66 ACCATAGCTGGGATATCGGC-TTCGAT
*
196710508 ATGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATTGATATGAGACATCATATAAG
1 ATGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGAGACATCATATAAG
*
196710573 ACCATAGCTGGGCTATCGGCTTCGAT
66 ACCATAGCTGGGATATCGGCTTCGAT
* * * * * *
196710599 ATGTGCGATCCCATGTAAGACCATGTTTGGGGCATGGCATTGGCATCAATATGTGGTC-CCATAT
1 A--TGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATG-AGACATCATAT
196710663 AAGACCATA-CATGGGATAT
63 AAGACCATAGC-TGGGATAT
196710682 GGCATTGGCA
Statistics
Matches: 144, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
89 59 0.41
90 8 0.06
91 7 0.05
92 1 0.01
93 67 0.47
94 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (91 bp):
ATGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGAGACATCATATAAG
ACCATAGCTGGGATATCGGCTTCGAT
Found at i:196712896 original size:30 final size:30
Alignment explanation
Indices: 196712860--196712990 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
196712850 GACAAGATTG
* * * * *
196712860 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
196712890 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
196712918 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
196712948 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
196712977 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
196712991 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:196712951 original size:58 final size:58
Alignment explanation
Indices: 196712860--196712990 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
196712850 GACAAGATTG
* * * * * *
196712860 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
196712918 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
196712977 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
196712991 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:196720896 original size:29 final size:29
Alignment explanation
Indices: 196720793--196720922 Score: 158
Period size: 29 Copynumber: 4.5 Consensus size: 29
196720783 GACAAGATTG
* * * * *
196720793 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* *
196720823 GCACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
196720851 GCACT-AGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
196720879 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
196720908 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
196720923 TTCACTATAT
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
26 2 0.02
27 10 0.11
28 21 0.24
29 39 0.44
30 15 0.17
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:196721715 original size:16 final size:16
Alignment explanation
Indices: 196721694--196721726 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
196721684 AAATCACTAA
196721694 AAATAGT-AGTAGAATT
1 AAATAGTGAGTA-AATT
196721710 AAATAGTGAGTAAATT
1 AAATAGTGAGTAAATT
196721726 A
1 A
196721727 TGGAACTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (16 bp):
AAATAGTGAGTAAATT
Found at i:196724035 original size:38 final size:39
Alignment explanation
Indices: 196723983--196724125 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
196723973 GAATGTTCGA
196723983 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
196724022 GTGAT-CCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
196724060 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
196724099 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
196724126 CTTTGTGCGG
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
38 34 0.37
39 50 0.54
40 9 0.10
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:196724071 original size:77 final size:79
Alignment explanation
Indices: 196723984--196724165 Score: 260
Period size: 77 Copynumber: 2.3 Consensus size: 79
196723974 AATGTTCGAG
196723984 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGAT-CCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
196724047 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
196724061 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
196724126 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
196724140 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
196724166 GTTTGAACGA
Statistics
Matches: 93, Mismatches: 9, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
77 43 0.46
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:196725802 original size:45 final size:45
Alignment explanation
Indices: 196725738--196725853 Score: 162
Period size: 45 Copynumber: 2.6 Consensus size: 45
196725728 GTTGTACAGT
* **
196725738 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
* *
196725783 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
* *
196725828 ATTTTTTGGGCC-TCGAGCCTAGCAGG
1 ATTATTCGGGCCTTCGAGCCTAGCAGG
196725854 AAAAATGCCG
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
44 13 0.20
45 51 0.80
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
Found at i:196728150 original size:15 final size:15
Alignment explanation
Indices: 196728118--196728188 Score: 88
Period size: 15 Copynumber: 4.7 Consensus size: 15
196728108 GAGATGTCAT
* *
196728118 GAAAACCAAGATAAA
1 GAAATCCAAGAAAAA
* *
196728133 GAAGTCCAGGAAAAA
1 GAAATCCAAGAAAAA
*
196728148 GAAATCCAAGATAAA
1 GAAATCCAAGAAAAA
*
196728163 GAAATCCAAGAAACA
1 GAAATCCAAGAAAAA
196728178 GAAATCCAAGA
1 GAAATCCAAGA
196728189 TACAATATCA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 47 1.00
ACGTcount: A:0.59, C:0.15, G:0.17, T:0.08
Consensus pattern (15 bp):
GAAATCCAAGAAAAA
Found at i:196728159 original size:30 final size:30
Alignment explanation
Indices: 196728118--196728190 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
196728108 GAGATGTCAT
* * *
196728118 GAAAACCAAGATAAAGAAGTCCAGGAAAAA
1 GAAATCCAAGATAAAGAAATCCAAGAAAAA
*
196728148 GAAATCCAAGATAAAGAAATCCAAGAAACA
1 GAAATCCAAGATAAAGAAATCCAAGAAAAA
196728178 GAAATCCAAGATA
1 GAAATCCAAGATA
196728191 CAATATCATA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.59, C:0.15, G:0.16, T:0.10
Consensus pattern (30 bp):
GAAATCCAAGATAAAGAAATCCAAGAAAAA
Found at i:196733867 original size:31 final size:31
Alignment explanation
Indices: 196733829--196733900 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
196733819 TTCAAAAAAA
*
196733829 TGGGCTCACACACCTATGTGGCCTACCTGTG
1 TGGGCTCACACACCCATGTGGCCTACCTGTG
* * *
196733860 TGGGCTCACACGCCCATGTGGCCTGCCTTTG
1 TGGGCTCACACACCCATGTGGCCTACCTGTG
*
196733891 TGGGCCCACA
1 TGGGCTCACA
196733901 TGACTAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.14, C:0.35, G:0.28, T:0.24
Consensus pattern (31 bp):
TGGGCTCACACACCCATGTGGCCTACCTGTG
Found at i:196735325 original size:31 final size:31
Alignment explanation
Indices: 196735285--196735349 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
196735275 TTCAATCTCA
* *
196735285 ACATATACTGGGCCGAAGCCTTTTCATAAATC
1 ACATATACTGGGCCAAAACCTTTT-ATAAATC
*
196735317 ACAT-TACTGGGCCAAAACCTTTTATAATTC
1 ACATATACTGGGCCAAAACCTTTTATAAATC
196735347 ACA
1 ACA
196735350 ACTCATATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 9 0.30
31 17 0.57
32 4 0.13
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (31 bp):
ACATATACTGGGCCAAAACCTTTTATAAATC
Found at i:196735630 original size:25 final size:25
Alignment explanation
Indices: 196735596--196735665 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
196735586 CTCTTTTAAT
*
196735596 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
196735621 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
196735646 AACTGCGGCAAAGTCCTTTT
1 AACTGGGGCAAAGCCCTTTT
196735666 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:196735738 original size:20 final size:21
Alignment explanation
Indices: 196735713--196735760 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
196735703 AAATGAATAC
*
196735713 ATCATGTGCATATCATA-CAT
1 ATCATGTGCATATCATATCAA
196735733 ATCATGTGCATATCATATCAA
1 ATCATGTGCATATCATATCAA
196735754 ATCATGT
1 ATCATGT
196735761 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAA
Found at i:196738475 original size:45 final size:45
Alignment explanation
Indices: 196738395--196738491 Score: 117
Period size: 45 Copynumber: 2.2 Consensus size: 45
196738385 GACCAAGTCC
* *
196738395 GGGACATTGGCATCGATATATGGTTTTTCGAGTAAGACCATGTTT
1 GGGACATTGGCATCGATATATGGTGTTACGAGTAAGACCATGTTT
* *
196738440 GGGACGTTGGCATCGATATAT-GTGGTTAC-ATGTAAGACCATGTCT
1 GGGACATTGGCATCGATATATGGT-GTTACGA-GTAAGACCATGTTT
*
196738485 AGGACAT
1 GGGACAT
196738492 CGACATCGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
44 3 0.07
45 41 0.93
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (45 bp):
GGGACATTGGCATCGATATATGGTGTTACGAGTAAGACCATGTTT
Found at i:196738499 original size:45 final size:41
Alignment explanation
Indices: 196738426--196738581 Score: 129
Period size: 41 Copynumber: 3.6 Consensus size: 41
196738416 GGTTTTTCGA
* * *
196738426 GTAAGACCATGTTTGGGACGTTGGCATCGATATATGTGGTTACAT
1 GTAAGACCATGTCTGGGAC-ATGGCATCGATAT-T-TGATTA-AT
* *
196738471 GTAAGACCATGTCTAGGACATCGACATCG-TATTTGATTAAT
1 GTAAGACCATGTCTGGGACAT-GGCATCGATATTTGATTAAT
**
196738512 GTAAGACTC-TGTCTGGGACAATGGCATCGATATGAGA-TAGCAT
1 GTAAGAC-CATGTCTGGGAC-ATGGCATCGATATTTGATTA--AT
*
196738555 GTAAGACCACGTCTGGGACATTGGCAT
1 GTAAGACCATGTCTGGGACA-TGGCAT
196738582 TGTTCGATAT
Statistics
Matches: 93, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
41 26 0.28
42 15 0.16
43 25 0.27
44 4 0.04
45 23 0.25
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (41 bp):
GTAAGACCATGTCTGGGACATGGCATCGATATTTGATTAAT
Found at i:196743607 original size:29 final size:29
Alignment explanation
Indices: 196743575--196743709 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
196743565 ATACCCTCCG
** * *
196743575 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
196743604 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
196743633 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
196743662 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
196743691 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
196743710 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:196743642 original size:58 final size:58
Alignment explanation
Indices: 196743521--196743710 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
196743511 TACTCGATTT
* * * *** *
196743521 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
196743579 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
196743637 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
196743695 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
196743711 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:196751714 original size:29 final size:29
Alignment explanation
Indices: 196751682--196751816 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
196751672 ATACCCTCCG
** * *
196751682 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
196751711 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
196751740 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
196751769 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
196751798 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
196751817 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:196751749 original size:58 final size:58
Alignment explanation
Indices: 196751628--196751817 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
196751618 TACTCGATTT
* * * *** *
196751628 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
196751686 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
196751744 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
196751802 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
196751818 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:196755337 original size:29 final size:29
Alignment explanation
Indices: 196755275--196755377 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
196755265 GATTTAAGCC
* *** * *
196755275 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
196755304 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
196755333 TGCACACTTAGTGCCATATATTTCTAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
196755362 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
196755378 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:196756989 original size:79 final size:81
Alignment explanation
Indices: 196756852--196757036 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
196756842 TCGAATGATG
*
196756852 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
196756916 CGTGCGAGTTACTA-A
66 CGTGCGAGTTACTATA
* * **
196756931 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATC-CGAAGGCA
*
196756993 TTTGTGCGAGTTACTATA
64 TTCGTGCGAGTTACTATA
* * *
196757011 ACCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
196757037 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 2 0.02
79 58 0.63
80 32 0.35
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTACTATA
Found at i:196757043 original size:40 final size:39
Alignment explanation
Indices: 196756853--196757036 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
196756843 CGAATGATGT
* * *
196756853 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
196756893 CCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
196756933 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
196756971 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
196757012 CCGGGCTATGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
196757037 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:196757058 original size:79 final size:78
Alignment explanation
Indices: 196756886--196757069 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 78
196756876 GTGCTAAGTG
* * *
196756886 ACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTCGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGG
**
196756951 CATTTGTGCGAGTT
65 CATTTGAACGAGTT
* * *
196756965 ACTAAATCCGGGTTAAG-TCTCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAA
1 ACTATATCC-GGTTAAGATC-CGAAGGCATTCGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAA
196757028 AGGCATTTGAACGAG-T
62 AGGCATTTGAACGAGTT
196757044 AGCTATATCCGGTTAA-ACTCCGAAGG
1 A-CTATATCCGGTTAAGA-TCCGAAGG
196757070 TACATGATTC
Statistics
Matches: 89, Mismatches: 9, Indels: 14
0.79 0.08 0.12
Matches are distributed among these distances:
78 4 0.04
79 57 0.64
80 28 0.31
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTCGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGC
ATTTGAACGAGTT
Found at i:196761873 original size:39 final size:40
Alignment explanation
Indices: 196761802--196762117 Score: 512
Period size: 40 Copynumber: 8.0 Consensus size: 40
196761792 TTGAGAGTTA
196761802 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
196761842 TATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
196761881 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
196761921 TATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
196761960 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
196761999 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
196762039 TATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
196762079 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
196762118 ATGTGTATTC
Statistics
Matches: 257, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
39 113 0.44
40 144 0.56
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:196761899 original size:79 final size:79
Alignment explanation
Indices: 196761801--196762119 Score: 514
Period size: 79 Copynumber: 4.0 Consensus size: 79
196761791 ATTGAGAGTT
196761801 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGAG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGAG
196761866 CATTCGTGCTAGTG
66 CATTCGTGCTAGTG
196761880 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGAG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGAG
*
196761945 CATTCGTGCTGGTG
66 CATTCGTGCTAGTG
* *
196761959 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GAGTTATATCCGGGCTAAGTCTCGAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTC-CGAAGA
*
196762023 GCATTCGTGCTAGAG
65 GCATTCGTGCTAGTG
* * * *
196762038 TTATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGT-CCGAAGA
* * *
196762103 GCAATCATGCTGGTG
65 GCATTCGTGCTAGTG
196762118 AT
1 AT
196762120 GTGTATTCGG
Statistics
Matches: 223, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
78 20 0.09
79 166 0.74
80 36 0.16
81 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (79 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGAG
CATTCGTGCTAGTG
Found at i:196762331 original size:25 final size:25
Alignment explanation
Indices: 196762281--196762331 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
196762271 TGTGTAACAA
* *
196762281 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
196762306 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
196762331 C
1 C
196762332 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:196766901 original size:35 final size:36
Alignment explanation
Indices: 196766824--196766902 Score: 115
Period size: 35 Copynumber: 2.2 Consensus size: 36
196766814 TATCTAAAGG
196766824 AATGTTCTTTATTTCAAAAAAAAAAACAAAATTTTT
1 AATGTTCTTTATTTCAAAAAAAAAAACAAAATTTTT
* * *
196766860 AATGTTCTTTATTTC-TAAAAGAAATCAAAATTTTT
1 AATGTTCTTTATTTCAAAAAAAAAAACAAAATTTTT
*
196766895 ACTGTTCT
1 AATGTTCT
196766903 GATATGAGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
35 24 0.62
36 15 0.38
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.43
Consensus pattern (36 bp):
AATGTTCTTTATTTCAAAAAAAAAAACAAAATTTTT
Found at i:196767040 original size:25 final size:25
Alignment explanation
Indices: 196767002--196767071 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
196766992 AGGAAGTGCT
* *
196767002 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
196767027 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
196767052 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
196767072 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:196767084 original size:24 final size:24
Alignment explanation
Indices: 196767001--196767096 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
196766991 GAGGAAGTGC
*
196767001 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
196767026 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
196767050 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
196767074 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
196767097 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:196767095 original size:50 final size:50
Alignment explanation
Indices: 196767002--196767096 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
196766992 AGGAAGTGCT
**
196767002 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
196767052 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
196767097 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:196771496 original size:25 final size:25
Alignment explanation
Indices: 196771447--196771497 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
196771437 CCCTTATAAT
* *
196771447 GTGAAAATAACCATTTTGCCCCTAG
1 GTGAAAATAACCATTATACCCCTAG
* *
196771472 GTGAAAATGACCATTATACCTCTAG
1 GTGAAAATAACCATTATACCCCTAG
196771497 G
1 G
196771498 GATATGCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (25 bp):
GTGAAAATAACCATTATACCCCTAG
Found at i:196771552 original size:10 final size:10
Alignment explanation
Indices: 196771537--196771575 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
196771527 CTGATTTGTA
196771537 CATGATATGC
1 CATGATATGC
*
196771547 CATGATAAGC
1 CATGATATGC
196771557 ACATGATATGC
1 -CATGATATGC
196771568 CATGATAT
1 CATGATAT
196771576 ATTCATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (10 bp):
CATGATATGC
Found at i:196773491 original size:27 final size:25
Alignment explanation
Indices: 196773461--196773527 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 25
196773451 TCATGGTGTA
196773461 GCCACTAATGTCAGAATGCATGGCAAG
1 GCCACTAATGTCAGAA--CATGGCAAG
*
196773488 GCCACTAGAACGGT-AGAACATGGCAAG
1 GCCACT--AA-TGTCAGAACATGGCAAG
196773515 GCCACTAAT-TCAG
1 GCCACTAATGTCAG
196773528 TACTTCCCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
23 1 0.03
24 2 0.06
25 2 0.06
27 21 0.62
29 6 0.18
30 2 0.06
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.16
Consensus pattern (25 bp):
GCCACTAATGTCAGAACATGGCAAG
Found at i:196776318 original size:22 final size:22
Alignment explanation
Indices: 196776291--196776335 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
196776281 TGAATAATGA
196776291 TTGTATGATTTGATCGAATGTG
1 TTGTATGATTTGATCGAATGTG
196776313 TTGTATGATTTGATCGAATGTG
1 TTGTATGATTTGATCGAATGTG
196776335 T
1 T
196776336 GAGAAAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.04, G:0.27, T:0.47
Consensus pattern (22 bp):
TTGTATGATTTGATCGAATGTG
Found at i:196777715 original size:75 final size:75
Alignment explanation
Indices: 196777636--196777786 Score: 302
Period size: 75 Copynumber: 2.0 Consensus size: 75
196777626 CGAAATAAAT
196777636 CCAATCAAATGAGCAGGGGATTAACTCACTTCAGTGTTCCTAATTAACTTTAGAATTTGGGTTTT
1 CCAATCAAATGAGCAGGGGATTAACTCACTTCAGTGTTCCTAATTAACTTTAGAATTTGGGTTTT
196777701 ATTGATATAG
66 ATTGATATAG
196777711 CCAATCAAATGAGCAGGGGATTAACTCACTTCAGTGTTCCTAATTAACTTTAGAATTTGGGTTTT
1 CCAATCAAATGAGCAGGGGATTAACTCACTTCAGTGTTCCTAATTAACTTTAGAATTTGGGTTTT
196777776 ATTGATATAG
66 ATTGATATAG
196777786 C
1 C
196777787 TATTAATTAA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (75 bp):
CCAATCAAATGAGCAGGGGATTAACTCACTTCAGTGTTCCTAATTAACTTTAGAATTTGGGTTTT
ATTGATATAG
Found at i:196781317 original size:18 final size:18
Alignment explanation
Indices: 196781296--196781337 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
196781286 TATGTAATTC
196781296 TTCATTTTTA-TTTTATTT
1 TTCATTTTTAGTTTT-TTT
196781314 TTCA-TTTTAGTTTTTTT
1 TTCATTTTTAGTTTTTTT
196781331 TT-ATTTT
1 TTCATTTT
196781338 CTTAAACTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 1 0.05
17 13 0.59
18 8 0.36
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (18 bp):
TTCATTTTTAGTTTTTTT
Found at i:196782381 original size:2 final size:2
Alignment explanation
Indices: 196782374--196782421 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
196782364 TAGTCTTCTT
196782374 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
196782416 TA TA TA
1 TA TA TA
196782422 AGCATGTTCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:196784377 original size:40 final size:40
Alignment explanation
Indices: 196784333--196784461 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
196784323 TGCTGGAAAT
* * *
196784333 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* * *
196784373 TATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * *
196784413 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
196784453 TATATCCGG
1 TATATCCGG
196784462 TTATATTCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
39 4 0.05
40 69 0.92
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:196786589 original size:130 final size:131
Alignment explanation
Indices: 196786323--196786606 Score: 356
Period size: 130 Copynumber: 2.2 Consensus size: 131
196786313 AGTATTCATT
* * *
196786323 TAAATATTCTTTAAAACGAAGACGAGATTCTATATTTGGCAATGCGCGGAATAGCGCCCTAACAT
1 TAAA-ATTCTTTAAAACGAAGGCGAGATGCGATATTTGGCAATGCGCGGAATAGCGCCCTAACAT
* * * * *
196786388 GTTGGGTTGCAATTTCGCATTTGCTTAAAATAATCAAGTATCACTTCAAATTTTCACTCATATCT
65 GTTGGGTTGCAATTTCCCATTTGCTTAAAATAATAAAATATCACTTCAAACTTTCACTCAGATCT
*
196786453 TT
130 TC
* * * * * *
196786455 TAAAA-TCTTTAAAACGAAGGCGATATGCGATATTTGGCAATTCGTGGAATCGTGCCCTAACGTG
1 TAAAATTCTTTAAAACGAAGGCGAGATGCGATATTTGGCAATGCGCGGAATAGCGCCCTAACATG
* * * *
196786519 TTGGGTTGCAATTTCCCATTTGTTTAAAATAATAAAATATCCCTTCAAAACTTT-GCTCAGGTCT
66 TTGGGTTGCAATTTCCCATTTGCTTAAAATAATAAAATATCACTTC-AAACTTTCACTCAGATCT
196786583 TC
130 TC
196786585 TAAAATTCCTTTAAAACGAAGG
1 TAAAATT-CTTTAAAACGAAGG
196786607 TAATGCTCGG
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
130 104 0.80
131 8 0.06
132 18 0.14
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (131 bp):
TAAAATTCTTTAAAACGAAGGCGAGATGCGATATTTGGCAATGCGCGGAATAGCGCCCTAACATG
TTGGGTTGCAATTTCCCATTTGCTTAAAATAATAAAATATCACTTCAAACTTTCACTCAGATCTT
C
Found at i:196791576 original size:5 final size:5
Alignment explanation
Indices: 196791563--196791708 Score: 161
Period size: 5 Copynumber: 29.2 Consensus size: 5
196791553 ATATTTAAAA
* * *
196791563 ATAAT ATAAC ATAAT ATAAT ATAAT ATAGT ATGAT ATAAT ATAAT ATAA-
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* * * *
196791612 ATAATAT ATAAT ATAAT ATAGT ATGAT ATAAT AT-AT ATGAT ATAAT ATGAT
1 AT-A-AT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* * * *
196791663 ATAAT ATAAT ATGAT ATGAT ATGAT ATGAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A
196791709 GGCACAATTA
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
4 6 0.05
5 112 0.92
6 2 0.02
7 2 0.02
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:196791907 original size:32 final size:32
Alignment explanation
Indices: 196791865--196791949 Score: 134
Period size: 32 Copynumber: 2.7 Consensus size: 32
196791855 CAGTTATGCA
196791865 ATACTCAATTTATGAATATATCATTTCATACC
1 ATACTCAATTTATGAATATATCATTTCATACC
* *
196791897 ATACTTAATTTATGAATACATCATTTCATACC
1 ATACTCAATTTATGAATATATCATTTCATACC
* *
196791929 ATACTCAATTCATGAGTATAT
1 ATACTCAATTTATGAATATAT
196791950 AACTCATATA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.40
Consensus pattern (32 bp):
ATACTCAATTTATGAATATATCATTTCATACC
Found at i:196793163 original size:22 final size:21
Alignment explanation
Indices: 196793117--196793163 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
196793107 TTTGTTTCTT
*
196793117 TTATTTCATTTCTTTTATTTA
1 TTATTTCATTTCTTGTATTTA
196793138 TTATTTCATTTACTTAGTA-TTA
1 TTATTTCATTT-CTT-GTATTTA
196793160 TTAT
1 TTAT
196793164 AATAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 11 0.48
22 10 0.43
23 2 0.09
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.66
Consensus pattern (21 bp):
TTATTTCATTTCTTGTATTTA
Found at i:196795483 original size:40 final size:40
Alignment explanation
Indices: 196795421--196795598 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
196795411 AAGCCAAGTA
* * * *
196795421 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
196795460 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
196795500 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
196795540 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
196795580 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
196795599 TTATCATCCA
Statistics
Matches: 126, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 13 0.10
40 113 0.90
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:196803592 original size:40 final size:40
Alignment explanation
Indices: 196803423--196803597 Score: 212
Period size: 40 Copynumber: 4.4 Consensus size: 40
196803413 AAGCCAAGTA
* * * *
196803423 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
** *
196803462 CCTTCGGGACAAAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
196803502 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
196803542 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
196803582 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
196803598 TGGTTATCAT
Statistics
Matches: 120, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 14 0.12
40 106 0.88
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:196804887 original size:11 final size:10
Alignment explanation
Indices: 196804857--196804898 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
196804847 ACATGAGAGC
196804857 CTTTCTTTTT
1 CTTTCTTTTT
*
196804867 TTTTCTTTTT
1 CTTTCTTTTT
196804877 CTTTCTCTTTT
1 CTTTCT-TTTT
*
196804888 CTTTTTTTTT
1 CTTTCTTTTT
196804898 C
1 C
196804899 ATCATCATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 19 0.68
11 9 0.32
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (10 bp):
CTTTCTTTTT
Found at i:196806520 original size:13 final size:13
Alignment explanation
Indices: 196806502--196806530 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
196806492 TCAACTAAGA
196806502 CAAGCGCACCTAT
1 CAAGCGCACCTAT
196806515 CAAGCGCACCTAT
1 CAAGCGCACCTAT
196806528 CAA
1 CAA
196806531 ACAGTAGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.38, G:0.14, T:0.14
Consensus pattern (13 bp):
CAAGCGCACCTAT
Found at i:196811432 original size:25 final size:23
Alignment explanation
Indices: 196811392--196811439 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
196811382 TGCATTATGG
196811392 AAGGAAAATAAAGAAATGAAAAAAA
1 AAGGAAAATAAAGAAA--AAAAAAA
* *
196811417 AAGGAAAATGATGAAAAAAAAAA
1 AAGGAAAATAAAGAAAAAAAAAA
196811440 GAGCGTGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (23 bp):
AAGGAAAATAAAGAAAAAAAAAA
Found at i:196812760 original size:29 final size:29
Alignment explanation
Indices: 196812727--196812886 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
196812717 GTGACGAGAT
196812727 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
196812756 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
196812785 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
196812814 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
196812843 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
196812872 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
196812887 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:196820848 original size:29 final size:29
Alignment explanation
Indices: 196820815--196820974 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
196820805 GTGACGAGAT
196820815 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
196820844 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
196820873 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
196820902 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
196820931 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
196820960 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
196820975 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:196824292 original size:20 final size:20
Alignment explanation
Indices: 196824267--196824304 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
196824257 GTTTATTCGC
*
196824267 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
196824287 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
196824305 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:196832237 original size:20 final size:20
Alignment explanation
Indices: 196832212--196832249 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
196832202 GTTTATTCGC
*
196832212 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
196832232 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
196832250 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:196845220 original size:66 final size:68
Alignment explanation
Indices: 196845144--196845330 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
196845134 TAGTACCACT
*
196845144 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
196845206 CACG
65 CACG
196845210 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
196845275 ATCACG
63 ATCACG
196845281 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
196845331 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:196845255 original size:71 final size:71
Alignment explanation
Indices: 196845167--196845330 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
196845157 CGATTTGTCT
196845167 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
196845232 CTTTCA
66 CTTTCA
196845238 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
196845303 CTTTCA
66 CTTTCA
196845309 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
196845331 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:196845368 original size:71 final size:70
Alignment explanation
Indices: 196845167--196845364 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
196845157 CGATTTGTCT
* * *
196845167 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
196845232 CTTTCA
65 CTTTCA
* * *
196845238 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
196845303 CTTTCA
65 CTTTCA
* *
196845309 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
196845365 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:196852884 original size:30 final size:31
Alignment explanation
Indices: 196852844--196852901 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
196852834 TTTCGAGCCT
*
196852844 AGGGCTAAAATAGTAATTTTTTCAAAGTTTA
1 AGGGCTAAAATAGTAATTTTATCAAAGTTTA
* *
196852875 AGGGC-AAAATGGTCATTTTATCAAAGT
1 AGGGCTAAAATAGTAATTTTATCAAAGT
196852902 ATGAGTGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (31 bp):
AGGGCTAAAATAGTAATTTTATCAAAGTTTA
Found at i:196855366 original size:40 final size:40
Alignment explanation
Indices: 196855229--196855409 Score: 172
Period size: 39 Copynumber: 4.6 Consensus size: 40
196855219 CCACACCAAG
* * * * * * * *
196855229 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
196855269 GCCTTCGGGTCTTAGCCCGGATTTAAC-ACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
196855308 GCCTTC-GGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
196855347 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
196855386 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
196855410 CATTCAATTT
Statistics
Matches: 120, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
38 20 0.17
39 57 0.47
40 43 0.36
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:196859417 original size:40 final size:40
Alignment explanation
Indices: 196859372--196859538 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
196859362 CGGAATATAA
196859372 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
196859412 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
196859452 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
196859492 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
196859531 CCGGATAT
1 CCGGATAT
196859539 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:196867417 original size:40 final size:40
Alignment explanation
Indices: 196867372--196867538 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
196867362 CGGAATATAA
196867372 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
196867412 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
196867452 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
196867492 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
196867531 CCGGATAT
1 CCGGATAT
196867539 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:196877087 original size:17 final size:18
Alignment explanation
Indices: 196877045--196877093 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
196877035 AGTTGAAAAG
196877045 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
196877064 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
196877081 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
196877094 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:196877975 original size:40 final size:40
Alignment explanation
Indices: 196877909--196878075 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
196877899 AAATTGAATG
* * *
196877909 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
196877948 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
196877988 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
196878028 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
196878068 ATATCCGG
1 ATATCCGG
196878076 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:196885081 original size:17 final size:18
Alignment explanation
Indices: 196885039--196885087 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
196885029 AGTTGAAAAG
196885039 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
196885058 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
196885075 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
196885088 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:196885972 original size:40 final size:39
Alignment explanation
Indices: 196885906--196886052 Score: 131
Period size: 39 Copynumber: 3.8 Consensus size: 39
196885896 AAATTGAATG
*
196885906 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAAATT
* * ****
196885945 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAAATT
* * *
196885985 ATATCCGGGCTAAGGCCCGAAGGC-ATTCG-TGCGAGTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GA-AATT
*
196886024 CTATCCGGGCTAAGACCCGAAGGC-ATTTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTTG
196886053 TGCACGTGAT
Statistics
Matches: 86, Mismatches: 19, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
37 1 0.01
38 2 0.02
39 43 0.50
40 40 0.47
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAAATT
Found at i:196886034 original size:39 final size:39
Alignment explanation
Indices: 196885944--196886071 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
196885934 TGCTGGAAAT
* * *
196885944 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
196885984 TATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGT-AT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
196886023 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
196886063 TATATCCGG
1 TATATCCGG
196886072 TTATATTCCG
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 33 0.43
40 42 0.55
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:196892240 original size:20 final size:20
Alignment explanation
Indices: 196892207--196892259 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
196892197 GGAAGAATAA
196892207 AGAAATGAAAAAAAA-AAAG
1 AGAAATGAAAAAAAACAAAG
*
196892226 AGAATATGAAGAAAAACAAAG
1 AGAA-ATGAAAAAAAACAAAG
196892247 A-AAA-GAAAAAAAA
1 AGAAATGAAAAAAAA
196892260 AGTGTTCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
20 12 0.40
21 5 0.17
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (20 bp):
AGAAATGAAAAAAAACAAAG
Found at i:196893447 original size:27 final size:28
Alignment explanation
Indices: 196893415--196893543 Score: 143
Period size: 29 Copynumber: 4.5 Consensus size: 28
196893405 GTGACGAGAT
196893415 TGGCACTAAGTGTGC-GCTGGAAATATA
1 TGGCACTAAGTGTGCAGCTGGAAATATA
196893442 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCA-GCTGGAAATATA
*
196893471 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCA-GCTGGAAATATA
* ** * ***
196893500 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGC-AGCTGGAAATATA
*
196893529 TGGCACTATGTGTGC
1 TGGCACTAAGTGTGC
196893544 GGGCTTAAAT
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
27 15 0.17
29 72 0.82
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (28 bp):
TGGCACTAAGTGTGCAGCTGGAAATATA
Found at i:196893514 original size:29 final size:29
Alignment explanation
Indices: 196893415--196893506 Score: 152
Period size: 29 Copynumber: 3.2 Consensus size: 29
196893405 GTGACGAGAT
196893415 TGGCACTAAGTGTGC--GCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
196893442 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
196893471 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
196893500 CGGCACT
1 TGGCACT
196893507 GGGTGTGCGA
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 15 0.25
29 46 0.75
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:196901350 original size:29 final size:29
Alignment explanation
Indices: 196901317--196901449 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
196901307 GTGACGAGAT
196901317 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
196901346 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
196901375 TGGCACTAAGTGTGCATGCTGGAAAAAATA
1 TGGCACTAAGTGTGCGTGCTGG-AAATATA
* ** * * ***
196901405 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
196901434 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
196901450 GGCTTAAATC
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
29 67 0.75
30 22 0.25
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:196901439 original size:59 final size:58
Alignment explanation
Indices: 196901313--196901448 Score: 150
Period size: 59 Copynumber: 2.3 Consensus size: 58
196901303 TACGGTGACG
* * * *
196901313 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
196901370 ATATATGGCACTAAGTGTGCATGCTGGAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG-AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
196901429 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
196901449 GGGCTTAAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
57 3 0.05
58 21 0.32
59 40 0.62
60 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:196910785 original size:25 final size:25
Alignment explanation
Indices: 196910756--196910803 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
196910746 TTATAATATG
* * *
196910756 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
196910781 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
196910804 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:196910872 original size:20 final size:20
Alignment explanation
Indices: 196910847--196910905 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
196910837 TAAATATGGT
196910847 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
196910867 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
196910887 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
196910906 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:196910887 original size:11 final size:11
Alignment explanation
Indices: 196910851--196910905 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
196910841 TATGGTATGT
196910851 ATGATATGCAC
1 ATGATATGCAC
* *
196910862 ATGAAATG--T
1 ATGATATGCAC
196910871 ATGATATGCAC
1 ATGATATGCAC
*
196910882 ATGATATG--T
1 ATGATATGCAC
196910891 ATGATATGCAC
1 ATGATATGCAC
196910902 ATGA
1 ATGA
196910906 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:196911047 original size:25 final size:24
Alignment explanation
Indices: 196910956--196911051 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
196910946 GAGGAAGTGA
196910956 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
196910980 AAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
196911004 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
196911028 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
196911052 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
24 55 0.83
25 11 0.17
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:196911277 original size:31 final size:31
Alignment explanation
Indices: 196911242--196911305 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
196911232 CGTTTATAGT
196911242 AAAGGCTTCGGCCCAGTAACATGAAATATGA
1 AAAGGCTTCGGCCCAGTAACATGAAATATGA
**
196911273 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAACATGAAATATGA
196911304 AA
1 AA
196911306 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAACATGAAATATGA
Found at i:196915187 original size:29 final size:29
Alignment explanation
Indices: 196915153--196915284 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
196915143 TACTCGATTT
** * *
196915153 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
196915182 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
196915211 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
196915240 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
196915269 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
196915285 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:196923104 original size:29 final size:29
Alignment explanation
Indices: 196923070--196923201 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
196923060 TACTCGATTT
** * *
196923070 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
196923099 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
196923128 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
196923157 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
196923186 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
196923202 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:196932918 original size:39 final size:40
Alignment explanation
Indices: 196932875--196933010 Score: 206
Period size: 40 Copynumber: 3.5 Consensus size: 40
196932865 CGGATGACAT
*
196932875 CGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACTATATC
1 CGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTATATC
196932914 CGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTATATC
1 CGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTATATC
* *
196932954 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATATC
1 CGGGCTAAGTCCCGAAGGCAGTTGTGCTAG-TGACTATATC
*
196932994 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
196933011 TACTTGGGTT
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
39 35 0.38
40 54 0.59
41 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTATATC
Found at i:196934652 original size:29 final size:29
Alignment explanation
Indices: 196934591--196934689 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
196934581 ACAGTAAGTC
*
196934591 CGCACACTTAGTGCT-TA-ATATTCAAACC
1 CGCACACTTAGTGCTATACA-ATTCAAACT
196934619 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
196934648 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
196934676 CGCACACTTAGTGC
1 CGCACACTTAGTGC
196934690 CAATCTCATT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 34 0.50
29 33 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:196935788 original size:17 final size:18
Alignment explanation
Indices: 196935751--196935788 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
196935741 ACTTTTTTTT
196935751 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
196935770 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
196935787 TT
1 TT
196935789 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:196939031 original size:39 final size:40
Alignment explanation
Indices: 196938930--196939153 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
196938920 TCGAATGATG
* *
196938930 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
196938969 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
196939010 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
196939049 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
196939088 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
196939127 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
196939154 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
39 72 0.44
40 80 0.49
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:196939184 original size:79 final size:79
Alignment explanation
Indices: 196938983--196939186 Score: 200
Period size: 79 Copynumber: 2.6 Consensus size: 79
196938973 GGACTAAGAT
* ** * * * *
196938983 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTACGAGTTACTA
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGAGATAAATCCCGAAGGCATTTGTACGAGTTACTA
*
196939047 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** * * *
196939061 CCGAAGGCATTGGTGCGAGTTACTAAATCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTGGAACGAGTTACTAAATCCGAGATAAATCCCGAAGGCATTTGTACGAGTTACTA
*
196939125 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* * *
196939141 CCGAAGGCATTTGAACGAG-TAGCTATATCCG-GATAAATTCCGAAGG
1 CCGAAGGCATTGGAACGAGTTA-CTAAATCCGAGATAAATCCCGAAGG
196939187 TACGTGATTC
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
78 33 0.31
79 48 0.45
80 25 0.24
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTGGAACGAGTTACTAAATCCGAGATAAATCCCGAAGGCATTTGTACGAGTTACTA
ATACCGGGCTAAGC
Found at i:196940552 original size:41 final size:41
Alignment explanation
Indices: 196940490--196940571 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
196940480 TTAACCCCTC
* *
196940490 GTGTCCGACTCCGGCAACGGTCTCGGGTACGGGGTGTTACA
1 GTGTACGACTCCGGCAACGGTCTCGGGTACGGGGCGTTACA
*
196940531 GTGTACGACTCCGGCGACGGTCTCGGGTACGGGGCGTTACA
1 GTGTACGACTCCGGCAACGGTCTCGGGTACGGGGCGTTACA
196940572 ATTTTATTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.15, C:0.27, G:0.38, T:0.21
Consensus pattern (41 bp):
GTGTACGACTCCGGCAACGGTCTCGGGTACGGGGCGTTACA
Found at i:196947217 original size:40 final size:40
Alignment explanation
Indices: 196947161--196947338 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
196947151 CGGATGGCAA
* * *
196947161 CCGGGCTAAGTCCCGAAGGAATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
196947201 TCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
196947241 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
196947281 CCGGGCTAAGTCCCGCAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
196947321 CC-GACTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
196947339 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 15 0.12
40 108 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:196951644 original size:74 final size:75
Alignment explanation
Indices: 196951475--196951660 Score: 304
Period size: 74 Copynumber: 2.5 Consensus size: 75
196951465 GAATCCAATC
196951475 ACCAGCATAAGACCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
1 ACCAGCATAAG-CCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
196951540 CCAGATATAAT
65 CCAGATATAAT
* * *
196951551 ACCAGCACAAAGCCTGCGGGATTTAACTCGGATATAATACCAGCACGAAG-CTG-TGGATTTAAC
1 ACCAGCA-TAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAAC
196951614 CCAGATATAAT
65 CCAGATATAAT
196951625 ACCAGCATGAAGCCTGCGGGATTTAACCCGGATATA
1 ACCAGCAT-AAGCCTGCGGGATTTAACCCGGATATA
196951661 TTTCCAACAT
Statistics
Matches: 103, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
74 53 0.51
75 3 0.03
76 44 0.43
77 3 0.03
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (75 bp):
ACCAGCATAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACC
CAGATATAAT
Found at i:196951678 original size:38 final size:37
Alignment explanation
Indices: 196951475--196951660 Score: 259
Period size: 38 Copynumber: 4.9 Consensus size: 37
196951465 GAATCCAATC
*
196951475 ACCAGCATAAGACCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCAGAAG-CCTGCGGGATTTAACCCGGATATAAT
*
196951513 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCA-GAAGCCTGCGGGATTTAACCCGGATATAAT
* *
196951551 ACCAGCACAAAGCCTGCGGGATTTAACTCGGATATAAT
1 ACCAGCA-GAAGCCTGCGGGATTTAACCCGGATATAAT
* *
196951589 ACCAGCACGAAG-CTG-TGGATTTAACCCAGATATAAT
1 ACCAGCA-GAAGCCTGCGGGATTTAACCCGGATATAAT
196951625 ACCAGCATGAAGCCTGCGGGATTTAACCCGGATATA
1 ACCAGCA-GAAGCCTGCGGGATTTAACCCGGATATA
196951661 TTTCCAACAT
Statistics
Matches: 133, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
36 29 0.22
37 6 0.05
38 95 0.71
39 3 0.02
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (37 bp):
ACCAGCAGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:196954765 original size:33 final size:34
Alignment explanation
Indices: 196954727--196954808 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
196954717 GCCTAAGCCC
*
196954727 ATTCAGATAACAGTGATACTAGGCCAGAGCC-CTT
1 ATTCAGATAACAGT-AAACTAGGCCAGAGCCTCTT
* * * **
196954761 -TTCAGATTACACTAAACTGGGCCTTAGCCTCTT
1 ATTCAGATAACAGTAAACTAGGCCAGAGCCTCTT
196954794 ATTCAGATAACAGTA
1 ATTCAGATAACAGTA
196954809 TAGCCCATAG
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 12 0.32
33 14 0.37
34 12 0.32
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (34 bp):
ATTCAGATAACAGTAAACTAGGCCAGAGCCTCTT
Found at i:196956453 original size:12 final size:12
Alignment explanation
Indices: 196956438--196956524 Score: 52
Period size: 12 Copynumber: 7.3 Consensus size: 12
196956428 CTTGATCAGG
*
196956438 TCCTAAATCTTC
1 TCCTAAATCATC
** *
196956450 TCCTTTATCAGC
1 TCCTAAATCATC
*
196956462 TCCTAAATCCTC
1 TCCTAAATCATC
* *
196956474 TCCT-TATCAGC
1 TCCTAAATCATC
*
196956485 TCCTAAATCCTC
1 TCCTAAATCATC
* *
196956497 TCCCT-TATCAGC
1 T-CCTAAATCATC
*
196956509 TCCTAAATCTTC
1 TCCTAAATCATC
196956521 TCCT
1 TCCT
196956525 GACAACCTTT
Statistics
Matches: 52, Mismatches: 20, Indels: 6
0.67 0.26 0.08
Matches are distributed among these distances:
11 11 0.21
12 38 0.73
13 3 0.06
ACGTcount: A:0.21, C:0.38, G:0.03, T:0.38
Consensus pattern (12 bp):
TCCTAAATCATC
Found at i:196956459 original size:24 final size:24
Alignment explanation
Indices: 196956420--196956524 Score: 149
Period size: 24 Copynumber: 4.4 Consensus size: 24
196956410 ACCGGCCAAC
* *
196956420 TCCTGCTCCTTGATCAGGTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
196956445 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
196956469 TCCTCTCC-TTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
196956492 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
196956516 TCTTCTCCT
1 TCCTCTCCT
196956525 GACAACCTTT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
23 23 0.32
24 47 0.64
25 3 0.04
ACGTcount: A:0.19, C:0.37, G:0.07, T:0.37
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:196956499 original size:47 final size:48
Alignment explanation
Indices: 196956420--196956524 Score: 158
Period size: 47 Copynumber: 2.2 Consensus size: 48
196956410 ACCGGCCAAC
* * *
196956420 TCCTGCTCCTTGATCAGGTCCTAAATCTTCTCCTTTATCAGCTCCTAAA
1 TCCT-CTCCTTGATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCTAAA
196956469 TCCTCTCCTT-ATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTGATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCTAAA
*
196956516 TCTTCTCCT
1 TCCTCTCCT
196956525 GACAACCTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 42 0.81
48 6 0.12
49 4 0.08
ACGTcount: A:0.19, C:0.37, G:0.07, T:0.37
Consensus pattern (48 bp):
TCCTCTCCTTGATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCTAAA
Found at i:196961036 original size:40 final size:40
Alignment explanation
Indices: 196960950--196961156 Score: 319
Period size: 40 Copynumber: 5.2 Consensus size: 40
196960940 TGAATGATAC
* *
196960950 CCGGGCTAAGTCCCGAAGGCATTTATGCGAG-TGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
196960989 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
196961029 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
196961069 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
196961109 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
196961149 CC-GGCTAA
1 CCGGGCTAA
196961157 ATTCCGAAGA
Statistics
Matches: 155, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 34 0.22
40 121 0.78
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:196971906 original size:39 final size:40
Alignment explanation
Indices: 196971798--196972000 Score: 272
Period size: 39 Copynumber: 5.2 Consensus size: 40
196971788 AATGATACCT
* * *
196971798 GGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCC
196971838 GGGCTAAGACCCGAAGGCATTTGTG-GAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
196971877 GGG-TAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
*
196971916 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-CC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
* * * ** *
196971955 CGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
196971995 -GGCTAA
1 GGGCTAA
196972001 ATTCCGAAGA
Statistics
Matches: 147, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
38 21 0.14
39 67 0.46
40 59 0.40
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
Done.