Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 630 of 770
Found at i:197579868 original size:42 final size:43
Alignment explanation
Indices: 197579811--197579918 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 43
197579801 GATGTCGCTA
* * *
197579811 TCCCAGACAGGGTCTTACACGAAATCATATA-CAATGCCAATG
1 TCCCAGACATGGTCTTACACGAAATCACAAATCAATGCCAATG
* * **
197579853 TCCTAGACATGGTCTTAAACGTAAATCACAAATTGATGCCAATG
1 TCCCAGACATGGTCTTACACG-AAATCACAAATCAATGCCAATG
*
197579897 TCCCAGACGTGGTCTTACACGA
1 TCCCAGACATGGTCTTACACGA
197579919 TAACACATAT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 18 0.33
43 9 0.17
44 27 0.50
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAATCACAAATCAATGCCAATG
Found at i:197585538 original size:30 final size:30
Alignment explanation
Indices: 197585483--197585549 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
197585473 TTTTTCAACT
* *
197585483 TCTTTTTCACTCTCAAATTTCTTTTCGTTC
1 TCTTTTTCAATCTCAAATTTCTTTTCATTC
* *
197585513 TCTTTTTCAATCTC-ATTTTCTTTTTCATTT
1 TCTTTTTCAATCTCAAATTTC-TTTTCATTC
197585543 TCTTTTT
1 TCTTTTT
197585550 GCTTTTCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 5 0.16
30 27 0.84
ACGTcount: A:0.12, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
TCTTTTTCAATCTCAAATTTCTTTTCATTC
Found at i:197585549 original size:18 final size:18
Alignment explanation
Indices: 197585500--197585555 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
197585490 CACTCTCAAA
* *
197585500 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
197585517 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
197585535 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
197585554 TT
1 TT
197585556 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:197585556 original size:12 final size:12
Alignment explanation
Indices: 197585525--197585549 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
197585515 TTTTTCAATC
197585525 TCATTTTCTTTT
1 TCATTTTCTTTT
197585537 TCATTTTCTTTT
1 TCATTTTCTTTT
197585549 T
1 T
197585550 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:197585567 original size:12 final size:12
Alignment explanation
Indices: 197585552--197585582 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
197585542 TTCTTTTTGC
*
197585552 TTTTCAAAGGCT
1 TTTTCAAAGGAT
197585564 TTTTCAAAGGAT
1 TTTTCAAAGGAT
197585576 TTTTCAA
1 TTTTCAA
197585583 GTTCTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGAT
Found at i:197601289 original size:68 final size:70
Alignment explanation
Indices: 197601217--197601414 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
197601207 ACACCCTGTA
* * * *
197601217 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
197601279 ATAAAT
65 ATAAAT
*
197601285 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
197601350 ATAAAT
65 ATAAAT
*
197601356 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
197601415 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:197601328 original size:41 final size:41
Alignment explanation
Indices: 197601283--197601400 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
197601273 TGAAAGATAA
197601283 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
197601324 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
197601354 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
197601395 ATGTAG
1 ATGTAG
197601401 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:197601340 original size:71 final size:71
Alignment explanation
Indices: 197601251--197601414 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
197601241 GAGATGTATC
197601251 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
197601316 AGGACA
66 AGGACA
197601322 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
197601387 AGGACA
66 AGGACA
197601393 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
197601415 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:197608856 original size:68 final size:70
Alignment explanation
Indices: 197608784--197608981 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
197608774 ACACCCTGTA
* * * *
197608784 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
197608846 ATAAAT
65 ATAAAT
*
197608852 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
197608917 ATAAAT
65 ATAAAT
*
197608923 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
197608982 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:197608895 original size:41 final size:41
Alignment explanation
Indices: 197608850--197608967 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
197608840 TGAAAGATAA
197608850 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
197608891 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
197608921 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
197608962 ATGTAG
1 ATGTAG
197608968 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:197608907 original size:71 final size:71
Alignment explanation
Indices: 197608818--197608981 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
197608808 GAGATGTATC
197608818 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
197608883 AGGACA
66 AGGACA
197608889 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
197608954 AGGACA
66 AGGACA
197608960 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
197608982 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:197611399 original size:14 final size:15
Alignment explanation
Indices: 197611362--197611403 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
197611352 AAATATGAAC
197611362 TATATATGCTGAAATG
1 TATATATG-TGAAATG
*
197611378 TATA-ATGTGATA-G
1 TATATATGTGAAATG
197611391 TATATATGTGAAA
1 TATATATGTGAAA
197611404 GCTGAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:197611588 original size:43 final size:42
Alignment explanation
Indices: 197611540--197611694 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
197611530 ATGTGTTCTT
197611540 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
* * *
197611582 TGTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTCA
1 -GTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATT-A
* *
197611625 -TGTAAGACC-CTATCTGGAACAG-TGGCATCGATATGTGA-TA
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTA
* *
197611665 GCATGTAAGACCACGTC-GAGATGTTGGCAT
1 G--TGTAAGACCACGTCTGGGACGTTGGCAT
197611695 TGTATGATAA
Statistics
Matches: 91, Mismatches: 12, Indels: 19
0.75 0.10 0.16
Matches are distributed among these distances:
40 1 0.01
41 26 0.29
42 22 0.24
43 41 0.45
44 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
Found at i:197611641 original size:41 final size:42
Alignment explanation
Indices: 197611541--197611677 Score: 152
Period size: 43 Copynumber: 3.2 Consensus size: 42
197611531 TGTGTTCTTG
** *
197611541 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATT-A
1 TGTAAGACCATATCTGGGACATTGGCATCGATATGTGATTCA
* *
197611582 TGTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTCA
1 --TGTAAGACCATATCTGGGACATTGGCATCGATATGTGATTCA
* * * *
197611625 TGTAAGACCCTATCTGGAACAGTGGCATCGATATGTGATAGCA
1 TGTAAGACCATATCTGGGACATTGGCATCGATATGTGAT-TCA
197611668 TGTAAGACCA
1 TGTAAGACCA
197611678 CGTCGAGATG
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
41 26 0.32
42 15 0.19
43 40 0.49
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACATTGGCATCGATATGTGATTCA
Found at i:197613820 original size:27 final size:27
Alignment explanation
Indices: 197613753--197613820 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 27
197613743 TGTTACTGAG
* * ** *
197613753 ATGGGC-TGGGCCCAATTGATTTTGTT
1 ATGGGCTTTGGCCCAAATGATAATGTA
* *
197613779 ATGGGCTGTGACCCAAATGATAATGTA
1 ATGGGCTTTGGCCCAAATGATAATGTA
197613806 ATGGGCTTTGGCCCA
1 ATGGGCTTTGGCCCA
197613821 CTTATGCTCT
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
26 6 0.19
27 26 0.81
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (27 bp):
ATGGGCTTTGGCCCAAATGATAATGTA
Found at i:197622364 original size:37 final size:37
Alignment explanation
Indices: 197622314--197622437 Score: 214
Period size: 37 Copynumber: 3.3 Consensus size: 37
197622304 TACGAAGTCT
*
197622314 TACCCGGACATAATCTCCACATGTAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
197622351 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
197622388 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC-
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
197622424 TCACCCGGAACATA
1 T-ACCCGG-ACATA
197622438 TTTCCAAGTT
Statistics
Matches: 84, Mismatches: 1, Indels: 3
0.95 0.01 0.03
Matches are distributed among these distances:
36 1 0.01
37 78 0.93
38 5 0.06
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
Found at i:197622573 original size:49 final size:49
Alignment explanation
Indices: 197622506--197622803 Score: 533
Period size: 49 Copynumber: 6.1 Consensus size: 49
197622496 TTTACCACAT
* * * *
197622506 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
*
197622555 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
*
197622604 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGTCTCATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
197622653 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
197622702 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
*
197622751 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
197622800 ATAT
1 ATAT
197622804 ATTATTATGT
Statistics
Matches: 242, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 242 1.00
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.34
Consensus pattern (49 bp):
ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
Found at i:197626903 original size:40 final size:40
Alignment explanation
Indices: 197626854--197627237 Score: 645
Period size: 40 Copynumber: 9.8 Consensus size: 40
197626844 CCAGCATGAT
* * *
197626854 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
197626894 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
197626934 TGCTCTTCGAAACTTAGT-CGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
197626973 TGCTCTTCGGAACTTAGTCCGGATGCGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
197627013 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
197627053 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
197627093 TGCTCTTC-GAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
197627132 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCA-GAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
197627171 TGCTCTTC-GAACTTAGTCCGGATAC-TCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
197627209 TGCTCTTCGGAACTTAGT-CGGATATATCA
1 TGCTCTTCGGAACTTAGTCCGGATACATCA
197627238 TCTCAATTCT
Statistics
Matches: 329, Mismatches: 10, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
37 9 0.03
38 34 0.10
39 98 0.30
40 188 0.57
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:197626964 original size:79 final size:79
Alignment explanation
Indices: 197626854--197627237 Score: 641
Period size: 79 Copynumber: 4.9 Consensus size: 79
197626844 CCAGCATGAT
* * *
197626854 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTC-GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
197626919 CATCACTAGCACGAA
65 CATCACTAGCACGAA
* * *
197626934 TGCTCTTCGAAACTTAGT-CGGATGCGTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATG
1 TGCTCTTCG-AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
*
197626998 CGTCACTAGCACGAA
65 CATCACTAGCACGAA
197627013 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTC-GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
197627078 CATCACTAGCACGAA
65 CATCACTAGCACGAA
197627093 TGCTCTTCGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAC
1 TGCTCTTCGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAC
197627158 ATCACTAGCA-GAA
66 ATCACTAGCACGAA
*
197627171 TGCTCTTCGAACTTAGTCCGGATAC-TCACTAGCACGAATGCTCTTCGGAACTTAGT-CGGATAT
1 TGCTCTTCGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAC
197627234 ATCA
66 ATCA
197627238 TCTCAATTCT
Statistics
Matches: 289, Mismatches: 12, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
76 10 0.03
77 31 0.11
78 28 0.10
79 141 0.49
80 79 0.27
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
TGCTCTTCGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAC
ATCACTAGCACGAA
Found at i:197627008 original size:119 final size:119
Alignment explanation
Indices: 197626838--197627237 Score: 648
Period size: 119 Copynumber: 3.4 Consensus size: 119
197626828 GCCCGAATAC
* * * * * *
197626838 ACGTCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACGTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
197626903 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAAACTTAGT-CGGAT
66 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG-AACTTAGTCCGGAT
* * *
197626957 GCGTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATGCGTCACTAGCACGAATGCTCTTCG
1 ACGTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
197627022 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
66 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTC-GAACTTAGTCCGGAT
*
197627077 ACATCACTAGCACGAATGCTCTTC-GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACGTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
197627141 GAACTTAGTCCGGATACATCACTAGCA-GAATGCTCTTCGAACTTAGTCCGGAT
66 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAACTTAGTCCGGAT
*
197627194 AC-TCACTAGCACGAATGCTCTTCGGAACTTAGT-CGGATATATCA
1 ACGTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCA
197627238 TCTCAATTCT
Statistics
Matches: 264, Mismatches: 14, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
116 31 0.12
117 26 0.10
118 11 0.04
119 168 0.64
120 28 0.11
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
ACGTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAACTTAGTCCGGAT
Found at i:197627073 original size:159 final size:158
Alignment explanation
Indices: 197626838--197627237 Score: 655
Period size: 159 Copynumber: 2.5 Consensus size: 158
197626828 GCCCGAATAC
* * * * *
197626838 ACGTCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACGTCACTAGCA-GAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
* *
197626903 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAAACTTAGT-CGGATGCGTCACTAG
65 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG-AACTTAGTCCGGATACATCACTAG
197626967 CACGAATGCTCTTCGGAACTTAGTCCGGAT
129 CACGAATGCTCTTCGGAACTTAGTCCGGAT
*
197626997 GCGTCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
1 ACGTCACTAGCA-GAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCG
197627062 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAACTTAGTCCGGATACATCACTAGC
65 GAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAACTTAGTCCGGATACATCACTAGC
197627127 ACGAATGCTCTTCGGAACTTAGTCCGGAT
130 ACGAATGCTCTTCGGAACTTAGTCCGGAT
*
197627156 ACATCACTAGCAGAATGCTCTTC-GAACTTAGTCCGGATAC-TCACTAGCACGAATGCTCTTCGG
1 ACGTCACTAGCAGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
*
197627219 AACTTAGT-CGGATATATCA
66 AACTTAGTCCGGATACATCA
197627238 TCTCAATTCT
Statistics
Matches: 228, Mismatches: 12, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
155 10 0.04
156 31 0.14
157 17 0.07
158 19 0.08
159 151 0.66
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (158 bp):
ACGTCACTAGCAGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
AACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGAACTTAGTCCGGATACATCACTAGCA
CGAATGCTCTTCGGAACTTAGTCCGGAT
Found at i:197629101 original size:37 final size:36
Alignment explanation
Indices: 197629051--197629137 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
197629041 TACGAAGTCT
197629051 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
197629087 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
197629124 TCACCCGGAACATA
1 T-ACCCGG-ACATA
197629138 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:197629273 original size:49 final size:49
Alignment explanation
Indices: 197629206--197629358 Score: 270
Period size: 49 Copynumber: 3.1 Consensus size: 49
197629196 TTTACCACAT
* *
197629206 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
197629255 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
197629304 ATATGTATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
197629353 ATATAT
1 ATATAT
197629359 TATTATGTAC
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 98 1.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:197634119 original size:17 final size:16
Alignment explanation
Indices: 197634089--197634123 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
197634079 ATCAGTTCCA
197634089 TAATTTACTCACTATT
1 TAATTTACTCACTATT
*
197634105 TAATTCTACTTACTATT
1 TAATT-TACTCACTATT
197634122 TA
1 TA
197634124 GTGATTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.51
Consensus pattern (16 bp):
TAATTTACTCACTATT
Found at i:197635019 original size:29 final size:29
Alignment explanation
Indices: 197634986--197635059 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
197634976 CCTTCGAGCT
197634986 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
197635015 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
197635044 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
197635060 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:197635020 original size:58 final size:58
Alignment explanation
Indices: 197634927--197635059 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
197634917 TTAATACGAT
* * * * *
197634927 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
197634985 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
197635043 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
197635060 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:197642883 original size:29 final size:29
Alignment explanation
Indices: 197642850--197642923 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
197642840 CCTTCGAGCT
197642850 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
197642879 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
197642908 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
197642924 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:197642884 original size:58 final size:58
Alignment explanation
Indices: 197642791--197642923 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
197642781 ATACTCGATT
* * * * *
197642791 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
197642849 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
197642907 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
197642924 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:197653976 original size:27 final size:26
Alignment explanation
Indices: 197653928--197653979 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
197653918 GCGAGGCTGC
*
197653928 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
197653954 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
197653980 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:197659963 original size:37 final size:38
Alignment explanation
Indices: 197659877--197660036 Score: 207
Period size: 37 Copynumber: 4.3 Consensus size: 38
197659867 ATGCTAGAAT
*
197659877 TATATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
197659915 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCT-GTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
** *
197659952 TATATCCGGGTTAAATCTTGCAGGCTTCGTGTTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* * * * *
197659990 TATA-CCGGGTTAAATCTCGCAGGCCTAGTGCTTGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
197660027 TATATTCGGG
1 TATATCCGGG
197660037 CCTTCGTGCC
Statistics
Matches: 107, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
37 64 0.60
38 43 0.40
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
Found at i:197660031 original size:75 final size:75
Alignment explanation
Indices: 197659875--197660036 Score: 218
Period size: 75 Copynumber: 2.2 Consensus size: 75
197659865 ATATGCTAGA
* *
197659875 ATTATATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCTGGGTTAAATCCCGCAGGC
1 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGC
* *
197659940 TTCGTGCTGT
66 CTAGTGCTGT
* ** * *
197659950 AATATATCCGGGTTAAATCTTGCAGGCTTCGTGTTGGTAATATA-CCGGGTTAAATCTCGCAGGC
1 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGC
197660014 CTAGTGCTTGT
66 CTAGTGC-TGT
*
197660025 ATTATATTCGGG
1 ATTATATCCGGG
197660037 CCTTCGTGCC
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
74 23 0.31
75 52 0.69
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (75 bp):
ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGC
CTAGTGCTGT
Found at i:197660082 original size:43 final size:43
Alignment explanation
Indices: 197660029--197660226 Score: 308
Period size: 43 Copynumber: 4.6 Consensus size: 43
197660019 GCTTGTATTA
* * *
197660029 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTG
1 TATTCTGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
*
197660072 TATTCTGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCTGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
* *
197660115 TATTCTGGCCTTCGTGCCTAGCAGGCTTCGTGCCAATAATGTG
1 TATTCTGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
* *
197660158 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCCAGTGATGTG
1 TATTCTGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
197660201 TATT-TAGGCCTTCGTGCCTAGCAGGC
1 TATTCT-GGCCTTCGTGCCTAGCAGGC
197660227 GTAATGCCGG
Statistics
Matches: 143, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
43 143 1.00
ACGTcount: A:0.13, C:0.25, G:0.30, T:0.32
Consensus pattern (43 bp):
TATTCTGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
Found at i:197661507 original size:17 final size:18
Alignment explanation
Indices: 197661465--197661513 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
197661455 AGTTGAAAAG
197661465 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
197661484 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
197661501 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
197661514 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:197662398 original size:40 final size:40
Alignment explanation
Indices: 197662332--197662498 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
197662322 AAATTGAATG
* * *
197662332 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
197662371 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
197662411 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
197662451 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
197662491 ATATCCGG
1 ATATCCGG
197662499 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:197670534 original size:30 final size:30
Alignment explanation
Indices: 197670498--197670628 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
197670488 GACAAGATTG
* * * * *
197670498 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
197670528 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
197670556 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
197670586 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
197670615 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
197670629 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:197670589 original size:58 final size:58
Alignment explanation
Indices: 197670498--197670628 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
197670488 GACAAGATTG
* * * * * *
197670498 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
197670556 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
197670615 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
197670629 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:197676116 original size:30 final size:30
Alignment explanation
Indices: 197676080--197676210 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
197676070 GACAAGATTG
* * * * *
197676080 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
197676110 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
197676138 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
197676168 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
197676197 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
197676211 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:197676171 original size:58 final size:58
Alignment explanation
Indices: 197676080--197676210 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
197676070 GACAAGATTG
* * * * * *
197676080 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
197676138 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
197676197 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
197676211 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:197683644 original size:18 final size:17
Alignment explanation
Indices: 197683615--197683657 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
197683605 GCCCATAATG
197683615 CAAGCCCATGTGGGCCCA
1 CAAGCCCATGT-GGCCCA
* *
197683633 CACGCCCGTGTGGCCCA
1 CAAGCCCATGTGGCCCA
197683650 CAAGCCCA
1 CAAGCCCA
197683658 AATTTGGCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.21, C:0.44, G:0.26, T:0.09
Consensus pattern (17 bp):
CAAGCCCATGTGGCCCA
Found at i:197685175 original size:22 final size:21
Alignment explanation
Indices: 197685145--197685191 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
197685135 TACAAATTAA
197685145 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
197685167 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
197685188 ATCT
1 ATCT
197685192 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:197685197 original size:19 final size:19
Alignment explanation
Indices: 197685162--197685240 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
197685152 AGATTACAAG
197685162 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
197685183 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
197685200 ATCATAACTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
197685219 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
197685238 ATC
1 ATC
197685241 CTTAAATATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 1 0.02
21 8 0.15
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:197686078 original size:41 final size:42
Alignment explanation
Indices: 197686029--197686418 Score: 156
Period size: 41 Copynumber: 9.4 Consensus size: 42
197686019 ATCTGCTCCG
197686029 CTACTGCTT-GGGGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGGATAAGATCTGCAAATTTAACCTGTTACC
* **** ** * *
197686070 CTACTGCTTAGGGGATTAAG-GC-GGGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGGA-TAAGATCTGCAAATTTAACCTGTTACC
197686110 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGG-GATAAGATCTGCAAATTTAACCTGTTACC
* ** **** * * **
197686154 CTACTGCTTAGGGGATTAAGGTGAGTCGTCGTTGATCTACT-CC
1 CTACTGCTTAGGGGA-TAAGATCTG-CAAATTTAACCTGTTACC
** *
197686197 GCTACTGCTTAGACAGATAAGATCTGC-----GAACCTGTTACC
1 -CTACTGCTTAG-GGGATAAGATCTGCAAATTTAACCTGTTACC
* * * * *
197686236 CTACTGCTTAGGGGATTAAG----GCGAGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
*
197686276 ACTACTTCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTAGGG-GATAAGATCTGCAAATTTAACCTGTTACC
* * * * * *
197686320 CTACCGCTTAGGGGATTAAG----GCGAGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGGA-TAAGATCTGCAAAT-TT-AACCTGTTACC
*
197686360 ACTACTGCTTAGGGAGATAAGATCTACAAATTTAACCTGTTA-C
1 -CTACTGCTTAGGG-GATAAGATCTGCAAATTTAACCTGTTACC
197686403 CTACTGCTTAGGGGAT
1 CTACTGCTTAGGGGAT
197686419 TAAGGCGTTG
Statistics
Matches: 247, Mismatches: 65, Indels: 74
0.64 0.17 0.19
Matches are distributed among these distances:
34 2 0.01
37 2 0.01
38 19 0.08
39 6 0.02
40 8 0.03
41 79 0.32
42 30 0.12
43 60 0.24
44 32 0.13
45 9 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (42 bp):
CTACTGCTTAGGGGATAAGATCTGCAAATTTAACCTGTTACC
Found at i:197686149 original size:84 final size:84
Alignment explanation
Indices: 197685982--197686425 Score: 645
Period size: 84 Copynumber: 5.3 Consensus size: 84
197685972 ATCATTTTGG
* *
197685982 ACCCTACTGCTTAGAGGG-TTAAGGTGCATCGTCTTCGATCTGCTCCGCTACTGCTT-GGG-GAT
1 ACCCTACTGCTTAG-GGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
197686044 AAGATCTGCAAATTTAACCTGTT
62 AAGATCTGCAAATTTAACCTGTT
*
197686067 ACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
197686132 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * * * **
197686151 ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTCGTTGATCTACTCCGCTACTGCTTAGACAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
*
197686216 AGATCTGC-----GAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
*
197686233 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTTCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
197686298 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
197686317 ACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
197686382 TCTACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
197686401 A-CCTACTGCTTAGGGGATTAAGGCG
1 ACCCTACTGCTTAGGGGATTAAGGCG
197686426 TTGAATTTTG
Statistics
Matches: 325, Mismatches: 23, Indels: 24
0.87 0.06 0.06
Matches are distributed among these distances:
79 33 0.10
81 1 0.00
82 62 0.19
83 26 0.08
84 147 0.45
85 22 0.07
87 34 0.10
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:197686266 original size:166 final size:165
Alignment explanation
Indices: 197685982--197686425 Score: 614
Period size: 166 Copynumber: 2.6 Consensus size: 165
197685972 ATCATTTTGG
*
197685982 ACCCTACTGCTTAGAGGG-TTAAGGTGCA-TCGTCTTCGATCTGCTCCGCTACTGCTT-GGGGAT
1 ACCCTACTGCTTAG-GGGATTAAGGTG-AGTCGTCTT-GATCTGCTCCGCTACTGCTTAGGAGAT
*
197686044 AAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTC
63 AAGATCTGC--A--TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTC
197686109 CACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
124 CACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
* *
197686151 ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTCGTTGATCTACTCCGCTACTGCTTAGACAGATA
1 ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTC-TTGATCTGCTCCGCTACTGCTTAG-GAGATA
*
197686216 AGATCTGC-GAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTA
64 AGATCTGCATAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTA
*
197686280 CTTCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
129 CTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
* * * *
197686317 ACCCTACCGCTTAGGGGATTAAGGCGAGTC-T-TCGATCTGCTCCACTACTGCTTAGGGAGATAA
1 ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTCTTGATCTGCTCCGCTACTGCTTA-GGAGATAA
*
197686380 GATCTACAAATTTAACCTGTTA-CCTACTGCTTAGGGGATTAAGGCG
65 GATCTGC--A--TAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
197686426 TTGAATTTTG
Statistics
Matches: 250, Mismatches: 14, Indels: 24
0.87 0.05 0.08
Matches are distributed among these distances:
163 32 0.13
164 1 0.00
165 1 0.00
166 118 0.47
167 24 0.10
168 13 0.05
169 46 0.18
170 3 0.01
171 12 0.05
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (165 bp):
ACCCTACTGCTTAGGGGATTAAGGTGAGTCGTCTTGATCTGCTCCGCTACTGCTTAGGAGATAAG
ATCTGCATAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACT
GCTTAGGGAGATAAGATCTGCAAATTTAACCTGTT
Found at i:197687438 original size:19 final size:19
Alignment explanation
Indices: 197687382--197687438 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
197687372 CCTCTCCATT
* *
197687382 TTTTTTTCTTTTTTCTTTTT
1 TTTTTTTCCTTTTT-TTTTC
*
197687402 TTTTTTTCCTTTTCTTTTC
1 TTTTTTTCCTTTTTTTTTC
197687421 TTTTTTTCCTTTTTTTTT
1 TTTTTTTCCTTTTTTTTT
197687439 GAAATAGAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 21 0.64
20 12 0.36
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTTTTCCTTTTTTTTTC
Found at i:197693090 original size:22 final size:21
Alignment explanation
Indices: 197693060--197693106 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
197693050 TACAAATTAA
197693060 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
197693082 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
197693103 ATCT
1 ATCT
197693107 AAGACTGCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:197693115 original size:19 final size:19
Alignment explanation
Indices: 197693077--197693174 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
197693067 AGATTACAAG
197693077 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
197693098 ATCATATCTAAGACTGCAT
1 ATCATATCTAAGATTGCAT
197693117 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
197693134 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
197693153 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
197693172 ATC
1 ATC
197693175 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 47 0.64
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:197693141 original size:36 final size:37
Alignment explanation
Indices: 197693077--197693174 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
197693067 AGATTACAAG
197693077 ATCATATCTTCAAGATTGCATATCATATCTAAGACTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGACTGCAT
*
197693117 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGACTGCAT
197693153 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
197693175 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGACTGCAT
Found at i:197701276 original size:67 final size:71
Alignment explanation
Indices: 197701198--197701355 Score: 164
Period size: 67 Copynumber: 2.3 Consensus size: 71
197701188 CATCATGTGT
* * * ** * *
197701198 ACAAGAAAGCTACGAGACACCCTGTA-GTAGCTAGGTCACATGC-TGATTACGAGAGTA-AC-CC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTACAAGAGAAGACACC
197701259 ATGTAG
66 ATGTAG
* * * * *
197701265 ACAAGAGAGCTACGTGA-AAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTACAAGAGAA-GACAC
197701329 CATGTAG
65 CATGTAG
197701336 ACAAGAGAGCTACGAGACAA
1 ACAAGAGAGCTACGAGACAA
197701356 ATCGGCTAGG
Statistics
Matches: 72, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
66 3 0.04
67 31 0.43
68 10 0.14
70 2 0.03
71 24 0.33
72 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.26, T:0.18
Consensus pattern (71 bp):
ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTACAAGAGAAGACACC
ATGTAG
Found at i:197708749 original size:68 final size:70
Alignment explanation
Indices: 197708677--197708874 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
197708667 ACACCCTGTA
* * * *
197708677 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
197708739 ATAAAT
65 ATAAAT
*
197708745 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
197708810 ATAAAT
65 ATAAAT
*
197708816 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
197708875 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:197708788 original size:41 final size:41
Alignment explanation
Indices: 197708743--197708860 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
197708733 TGAAAGATAA
197708743 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
197708784 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
197708814 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
197708855 ATGTAG
1 ATGTAG
197708861 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:197708800 original size:71 final size:71
Alignment explanation
Indices: 197708711--197708874 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
197708701 GAGATGTATC
197708711 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
197708776 AGGACA
66 AGGACA
197708782 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
197708847 AGGACA
66 AGGACA
197708853 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
197708875 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:197714601 original size:19 final size:19
Alignment explanation
Indices: 197714573--197714719 Score: 85
Period size: 19 Copynumber: 8.1 Consensus size: 19
197714563 AATAAATTAC
* *
197714573 TCATCATAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
197714592 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
** * * *
197714611 TGC-T-GGAATAAATT-A-C
1 T-CATCTTAGTTAATTAAGT
* *
197714627 TCATCATAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
197714646 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
** * *
197714665 TGC-T-GGAATAAATT-A-T
1 T-CATCTTAGTTAATTAAGT
*
197714681 TCATGTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
*
197714700 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTAAGT
197714719 T
1 T
197714720 GCTGGAATAA
Statistics
Matches: 94, Mismatches: 24, Indels: 20
0.68 0.17 0.14
Matches are distributed among these distances:
15 2 0.02
16 5 0.05
17 14 0.15
18 14 0.15
19 57 0.61
20 2 0.02
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:197714624 original size:54 final size:54
Alignment explanation
Indices: 197714551--197714729 Score: 304
Period size: 54 Copynumber: 3.3 Consensus size: 54
197714541 GTTTAATTAG
*
197714551 TTAAGTTGTTGGAATAAATTACTCATCATAGTTAATTGAGTTCATCTTAGTTAA
1 TTAAGTTGCTGGAATAAATTACTCATCATAGTTAATTGAGTTCATCTTAGTTAA
197714605 TTAAGTTGCTGGAATAAATTACTCATCATAGTTAATTGAGTTCATCTTAGTTAA
1 TTAAGTTGCTGGAATAAATTACTCATCATAGTTAATTGAGTTCATCTTAGTTAA
* ** *
197714659 TTAAGTTGCTGGAATAAATTATTCATGTTAGTTAATTAAGTTCATCTTAGTTAA
1 TTAAGTTGCTGGAATAAATTACTCATCATAGTTAATTGAGTTCATCTTAGTTAA
*
197714713 TTTAGTTGCTGGAATAA
1 TTAAGTTGCTGGAATAA
197714730 TTTAATGATG
Statistics
Matches: 119, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 119 1.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (54 bp):
TTAAGTTGCTGGAATAAATTACTCATCATAGTTAATTGAGTTCATCTTAGTTAA
Found at i:197714794 original size:9 final size:9
Alignment explanation
Indices: 197714776--197714839 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 9
197714766 TTTATTTAAG
197714776 TTAA-GTGT
1 TTAATGTGT
*
197714784 TTCATGTGT
1 TTAATGTGT
*
197714793 TTTATGTGT
1 TTAATGTGT
197714802 TTAAATGTGT
1 TT-AATGTGT
*
197714812 TTAATATG-
1 TTAATGTGT
197714820 -T-ATGT-T
1 TTAATGTGT
197714826 TTAATGTGT
1 TTAATGTGT
197714835 TTAAT
1 TTAAT
197714840 TTCAAGTGTC
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
6 3 0.07
7 2 0.04
8 7 0.16
9 25 0.56
10 8 0.18
ACGTcount: A:0.23, C:0.02, G:0.19, T:0.56
Consensus pattern (9 bp):
TTAATGTGT
Found at i:197725167 original size:29 final size:29
Alignment explanation
Indices: 197725076--197725207 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
197725066 TACTCGATTT
** * *
197725076 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
197725105 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
197725134 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
197725163 TGCACACTTAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
197725192 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
197725208 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:197732873 original size:29 final size:28
Alignment explanation
Indices: 197732840--197732912 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
197732830 CCTTCGAGCT
197732840 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATAT-TTTCCAGCA
*
197732869 TGCACACTTAGTGCCATATTTTCCAGCA
1 CGCACACTTAGTGCCATATTTTCCAGCA
197732897 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
197732913 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATTTTCCAGCA
Found at i:197732901 original size:28 final size:29
Alignment explanation
Indices: 197732782--197732912 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
197732772 TACTCGATTT
** * *
197732782 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
197732811 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
197732840 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
197732869 TGCACACTTAGTGCCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
197732897 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
197732913 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
28 26 0.31
29 59 0.69
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:197738220 original size:540 final size:540
Alignment explanation
Indices: 197735109--197739744 Score: 7764
Period size: 539 Copynumber: 8.6 Consensus size: 540
197735099 GGGGTGTTAC
* *
197735109 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATAGTTG-G
1 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCAT-AAAGTGTGATTTAGTGGAAATTG-TGCG
*
197735173 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTT
64 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTT
* * *** * * * * * *
197735238 TACAATCCTA-GCTTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATTTAATTTTTGCCGT
129 TAAAAGCCTATGGGCAAAAGTGTAAA-ATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCAT
* * *
197735302 AGTATGA-AAAATTTAGTAATTAAATGTTTAAATAAACAAAATTAAAGCCAAA-TTTGGTCATCT
193 AGTATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCT
*
197735365 TCAACCCCTCGGCCGAAA--TTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTC
258 TCAACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTC
* * * *
197735428 CATAGTAAGTTCGTTCTTGCCCCGTTTTTAATGATTTTCACATTCTTGAAATCCTT-AAACATGA
323 CATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGA
* * * * * * *
197735492 TCTACCTCTTTCTACCATTGATTTGACTTATGATGAAGGTCTAGGGTTTCAACCATGCTATAAAT
388 TCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATAAAT
197735557 TTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAA
453 TTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAA
197735622 GTGATTTTCAATGAAAATGCTAA
518 GTGATTTTCAATGAAAATGCTAA
*
197735645 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTTCATAAAGTGTGATTTAGTTGAAATTGTGCGT
1 AAAGGACTAATTTGTAAAAGTTATAAATTTTG-TCATAAAGTGTGATTTAGTGGAAATTGTGCG-
*
197735710 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAGAATAAATTGAATGAAAATTATTT
64 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTT
*
197735775 TAAAAGCCTATGGGCAAAAGTGTAAAATGAT-AAACTTATGGGTAAAAATGTAATTTTCGCCATA
129 TAAAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATA
*
197735839 GTATGATAAAATTTAGTAATTAAATG-TTACAT-AA-AAAATAAAAGCAAATGTTTGGTCATCTT
194 GTATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTT
*
197735901 CAACCCCTTGGCTGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCC
259 CAACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCC
*
197735966 ATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTTGAAATCCTTGTAACATTA
324 ATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACG-TTTTTGAAATCCTTGTAACATGA
197736031 TCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAAACTATGATATAAA
388 TCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTG-AACTATGATATAAA
* *
197736096 TGT-TGTATTTTGATG-TTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTA
452 TTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTA
197736159 AGTGATTTTCAATGAAAATGCTAA
517 AGTGATTTTCAATGAAAATGCTAA
197736183 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAA-TGTGCGTT
1 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
*
197736247 TTTATAGTTATGAAAGTGGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
197736312 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
131 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
197736377 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTTCA
196 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTTCA
* *
197736442 ACCCCTTGGCAGAAAGTTTGAAGACCACCATGGTTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
261 ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
197736507 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
326 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
*
197736572 ACCTATTTCTACCATTTATTTGAGTTATGATAGAGGTCTAGGGTTTGAAACTATGATATAAATTT
391 ACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTG-AACTATGATATAAATTT
197736637 GTGTA-TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGT
455 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGT
*
197736701 GATTTTCAATGAAAATACTAA
520 GATTTTCAATGAAAATGCTAA
* * *
197736722 AAAGGACTAATTTGTAAAAGTTATAAAATTTATCATAAAAGTGTGATTTAGTGGAAATTGTTG-T
1 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCAT-AAAGTGTGATTTAGTGGAAATTG-TGCG
197736786 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTT
64 TTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTT
* * *** * * * * * *
197736851 TACAATCCTA-GCTTAAAAGTGTAAATAAGATAAAATTTAAGGGCAAAAATTTAATTTTTGCCGT
129 TAAAAGCCTATGGGCAAAAGTGTAAA-ATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCAT
* * * *
197736915 AGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATTAAAGCCAAATTTTGGTCATCT
193 AGTATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCT
* * *
197736980 TCAACCCCTCGGCCGAATG-TTGAAGATCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTC
258 TCAACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTC
* * * *
197737044 CATAGTAAGTTCGTTCTTGCCCCGTTTTTAATGATTTTCACATTCTTGAAATCC-TATAACATGA
323 CATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGA
* * * * * * *
197737108 TCTACCTCTTTCTACCATTGATTTGACTTATGATGAAGGTCTAGGGTTTCAACCATGTTATAAAT
388 TCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATAAAT
197737173 TTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAA
453 TTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAA
197737238 GTGATTTTCAATGAAAATGCTAA
518 GTGATTTTCAATGAAAATGCTAA
197737261 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
1 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCG-T
197737326 TTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTT
65 TTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTA-TTT
*
197737391 TAAAAGCCTATGGGTAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATA
129 TAAAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATA
*
197737456 GTATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAATGTTTGGTCATCTT
194 GTATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTT
*
197737521 CAACCCCTTGGCTGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCC
259 CAACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCC
197737586 ATAGTAAGTCCGTTCTTGCCCCG-TTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGAT
324 ATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGAT
* *
197737650 CTACCTATTTCTACCATTTATTTTAGTTATGATGGAGGTTTAGGGTTTGAACTATGATATAAATT
389 CTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATAAATT
*
197737715 TGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTGTGCTAAG
454 TGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAG
197737780 TGATTTTCAATGAAAATGCT-A
519 TGATTTTCAATGAAAATGCTAA
197737801 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
1 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
*
197737866 TTTATAGTTATGAAAGTGGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
*
197737931 AAAGCCTATGGGAAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
131 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
197737996 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTTCA
196 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTTCA
*
197738061 ACCCCTTGGCTGAAAGTTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
261 ACCCCTTGGCCGAAAG-TTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCA
197738126 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
325 TAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATC
*
197738191 TACCTATTTCTACCATTTATTTGAGTTATGATAGAGGTCTAGGGTTTGAACTATGATATAAATTT
390 TACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATAAATTT
197738256 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGT
455 GTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGT
*
197738321 GATTTTCAATGAAAATACTAA
520 GATTTTCAATGAAAATGCTAA
* *
197738342 AAAGGACTAGTTTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTTG-
1 AAAGGACTA-ATTTGTAAAAGTTATAAATTTTGTCAT-AAAGTGTGATTTAGTGGAAATTG-TGC
*
197738406 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATG-AAATTATT
63 GTTTTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATT
* * * * * * *
197738470 TTACAA---TCTGGGCTTAAAAGTGTAAATAAGATAAAATTTACGGGCAAAAATTTAATTTTTGC
128 TTAAAAGCCTATGGGC--AAAAGTGTAAA-ATGATAAAACTTATGGGTAAAAATGTAATTTTTGC
* * * *
197738532 CGTAGTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCA
190 CATAGTATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCA
* **
197738597 TCTTCAACCCCTCGGCCGAATTTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG
255 TCTTCAACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG
* * * *
197738662 CTCCATAGTAAGTTCGTTCTTGCCCCG-TTTTAATGATTTTCACATTCTTGAAATCCTTATAACA
320 CTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACA
* * * * * * *
197738726 TGATCTACCTCTTTCTACCATTGATTTGACTTATGATGAAGGTCTAGGGTTTCAACCATGTTATA
385 TGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATA
197738791 AATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGC
450 AATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGC
197738856 TAAGTGATTTTCAATGAAAATGCTAA
515 TAAGTGATTTTCAATGAAAATGCTAA
* *
197738882 AAAGGACTAATTTGTAGAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCATT
1 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
*
197738947 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTAAAAATAAATTGAATGAAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
197739012 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
131 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
197739077 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTTCA
196 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTTCA
*
197739142 ACCCCTTGGCTGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
261 ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
197739207 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACG-TTTTGAAATCCTTGTAACATGATCT
326 AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
197739271 ACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATAAATTTG
391 ACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATAAATTTG
* *
197739336 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTGTGCTAAGTG
456 TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGTG
197739401 ATTTTCAATGAAAATGCTAA
521 ATTTTCAATGAAAATGCTAA
* *
197739421 AAATGACTAATTTGTAAAATTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
1 AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
* *
197739486 TTTATAGTTATGAAAGTGGTTTGGCTAGGCTTAAGCTGAAAATAAATTGAATGAAAATTATTTTA
66 TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
197739551 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAA-TTTTGCCATAGT
131 AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
* *
197739615 ATGATAAAATTTAGTAATTAAATTTTTACATAAACAAAAGAAAAGCAAAAGTTTGGTCATCTTCA
196 ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTTCA
197739680 ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
261 ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
197739745 CATAACTCTA
Statistics
Matches: 3850, Mismatches: 207, Indels: 84
0.93 0.05 0.02
Matches are distributed among these distances:
534 12 0.00
535 125 0.03
536 155 0.04
537 216 0.06
538 632 0.16
539 1220 0.32
540 753 0.20
541 503 0.13
542 155 0.04
543 77 0.02
544 2 0.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (540 bp):
AAAGGACTAATTTGTAAAAGTTATAAATTTTGTCATAAAGTGTGATTTAGTGGAAATTGTGCGTT
TTTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA
AAAGCCTATGGGCAAAAGTGTAAAATGATAAAACTTATGGGTAAAAATGTAATTTTTGCCATAGT
ATGATAAAATTTAGTAATTAAATGTTTACATAAACAAAATAAAAGCAAAAGTTTGGTCATCTTCA
ACCCCTTGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCAT
AGTAAGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCT
ACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACTATGATATAAATTTG
TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACAACTTTTGCTAAGTG
ATTTTCAATGAAAATGCTAA
Found at i:197741805 original size:29 final size:29
Alignment explanation
Indices: 197741772--197741845 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
197741762 GTGACGAGAT
197741772 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
197741801 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
197741830 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
197741846 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:197741861 original size:29 final size:29
Alignment explanation
Indices: 197741829--197741904 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
197741819 CTGGAAATAT
* *
197741829 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
197741858 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
197741887 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
197741905 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:197741872 original size:58 final size:58
Alignment explanation
Indices: 197741772--197741904 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
197741762 GTGACGAGAT
* * * * * *
197741772 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
197741830 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
197741888 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
197741905 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:197749665 original size:29 final size:29
Alignment explanation
Indices: 197749632--197749705 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
197749622 GTGACGAGAT
197749632 TGGCACTAAGTGTGCGTGCTGAAAATATA
1 TGGCACTAAGTGTGCGTGCTGAAAATATA
* *
197749661 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGAAAATATA
197749690 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
197749706 AGCTCGAAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGAAAATATA
Found at i:197749721 original size:29 final size:29
Alignment explanation
Indices: 197749689--197749764 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
197749679 CTGGAAATAT
* *
197749689 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
197749718 ATGGCACTATGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
197749747 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
197749765 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:197753487 original size:540 final size:540
Alignment explanation
Indices: 197752162--197756980 Score: 8145
Period size: 540 Copynumber: 9.0 Consensus size: 540
197752152 GGCTGTCACA
** *
197752162 TCCTTTTTATTATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCAT
1 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
* * *
197752227 AATCTACCATTAAACATCAAAATACGCAAATTTATAACATTGTTCAAACCCTAGACCTCCATCAT
66 AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
* * *
197752292 AACTCAAATAAATGGTAGAAATAGGTAGATAATGCTACAAGGATTTCAAAAACATGAAAATCATT
131 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
* * * *
197752357 AAAAACGGGGCAAGAACAGACTTACTATAGAGCTTGGAAAGCATAAAAAAAACCCTAGCCATGGT
196 AAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT
* *
197752422 GGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTA
261 GGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTA
* * *
197752487 AACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTACCCATAAGTTTTATC
326 AACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
*
197752552 ATTTTACACTTTTGCCCATAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCATCTTAAGCCT
391 ATTTTACACTTTTGCCC-TAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCT
* *
197752617 AGCCGAACCACTTTCATAACTATAAAAACCAACAATTTCCACTAAATCACACTTTTATGATAAAT
455 AGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAT
197752682 TTTATAACTTTTACAAATTAG
520 TTTATAACTTTTACAAATTAG
* * * *
197752703 TCCTTTTTAGTATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACAATAAACATGAAT
1 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
* * *
197752768 AATCTACCATTAAACATCAAAATACACAAATTTATATCATAGTTCAAACCCTAGACCTCCATCAT
66 AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
197752833 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
131 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
*
197752898 AAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT
196 AAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT
* * * * *
197752963 GGTCTTCAAACTTTCAGCCAAGGGGTTGAAGATGACCAAACTTTTGCTTTTATTTTGTTTATGTA
261 GGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTA
197753028 AACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
326 AACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
197753093 ATTTTACACTTTTGCCCATAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCT
391 ATTTTACACTTTTGCCC-TAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCT
* *
197753158 AGCCGAACCACTTTCATAACTATAAAAACGCACAATTTCCACTAAATCACAC-TTTATGACAAAA
455 AGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAT
197753222 TTTATAACTTTTACAAATTAG
520 TTTATAACTTTTACAAATTAG
197753243 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
1 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
*
197753308 AGTCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
66 AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
* *
197753373 AACTCAAATAAATAGTAGAAATTGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
131 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
* * *
197753438 AAAAACGGGGTAAGAACGGACTTACTATGGACCTTGGAAAGCTTAAACAAAATCCTAGCCATGGT
196 AAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT
* **
197753503 GGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTACGTTGTTTATTTA
261 GGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTA
* * * *
197753568 AACATTTAATTACTAAATTTTATCACACTATGGTAAAAATTAAATTTATGCCCCTAAATTTTATC
326 AACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
* *
197753633 TTATTTACACTTTTAG-CCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCA-CTGTAAGC
391 AT-TTTACACTTTT-GCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCT-TAAGC
*
197753696 CAAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATGACAA
453 CTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAA
*
197753760 AATTTATAACTTTTACAAATTAG
518 ATTTTATAACTTTTACAAATTAG
* *
197753783 TCCTTTTTAGCATTTTCATTTAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCAT
1 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
* * *
197753848 AATCTACCATTAAACATCAAAATACACAAATTTATAGCATCGTTCAAACCCTAGACCTCCATCAT
66 AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
197753913 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
131 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
* *
197753978 AAAAACGGGGCAAGAACAGACTTATTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT
196 AAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT
* *
197754043 GGTCTTCAAAATTTCGGCGGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTA
261 GGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTA
* * *
197754108 AAC-TTTCATTACTAAATTTT-TCATACTACGG-AAAAATTACATTTTTG-CCCTTAATTTTATC
326 AACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
* * * **
197754169 ATATTTACAC-TTTACCCTAGGCCTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCT
391 AT-TTTACACTTTTGCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCT
197754233 AGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA-AAAT
455 AGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAT
* *
197754297 TTTATAAGTTTTATAAATTAG
520 TTTATAACTTTTACAAATTAG
197754318 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
1 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
*
197754383 AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAAACCTTCATCAT
66 AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
197754448 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTG-AAA-CATT
131 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
197754511 AAAAACGGGG-AAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCAT-GT
196 AAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT
*
197754574 GGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAA-TTTGCTTTTATTTTGTTTATTTA
261 GGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTA
*
197754638 AACA-TTAACTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
326 AACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
197754702 ATTTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACC-TAAGCCT
391 ATTTTACACTTTTG-CCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCT
*
197754766 AGCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATGACAAAT
455 AGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAT
197754830 TTTATAACTTTTACAAATTAG
520 TTTATAACTTTTACAAATTAG
*
197754851 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAACATGCAT
1 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
*
197754916 AATCTACCATTAAACATCAAAATAAACAAATTTATAACATGGTTCAAA-CCTAGA-C-TCATCAT
66 AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
*
197754978 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTC-AAAACGTTAAAATCATT
131 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
* *
197755042 AAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGCAGAGCTTAAACAAAACCCTAGCCATGGT
196 AAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT
197755107 GGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAA-TTTGCTTTTATTTTGTTTATTTA
261 GGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTA
197755171 AACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
326 AACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
197755236 ATTTTACACTTTTGCCCCTAGGCTTTT-AAATAATTTTCATTCAATTTATTTTCACCTTAAGCCT
391 ATTTTACACTTTTG-CCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCT
*
197755300 AGCC-AACCACTTTCATAACTAT-AAAACCCA-AATTTCCACTAAATCACACTTTTACGACAAAT
455 AGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAT
*
197755362 TTTATAAATTTTACAAATTAG
520 TTTATAACTTTTACAAATTAG
197755383 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCT-CAACCATAAACATGCAT
1 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
* *
197755447 AATCTACCATTAAATATCAAACTACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
66 AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
* * *
197755512 AAGTCAAATAAATGGTAGAAAGAGGTAGATCATGTTACAAGGATTTC-AAGACTGTGAAAATCAT
131 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAAC-GTGAAAATCAT
*
197755576 TAAAAACGGGGCAAGAACGAACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGG
195 TAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGG
*
197755641 TGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTT-TTTATTT
260 TGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTT
197755705 AAACATTTAATTACTAAATTTTATCATACTATGG-AAAAATTACATTTTTGCCCCTAAATTTTAT
325 AAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTAT
* * * **
197755769 CATATTTACTCTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCC
390 CAT-TTTACACTTTTGCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCC
197755834 TAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA-AAA
454 TAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAA
197755898 TTTTATAACTTTTACAAATTAG
519 TTTTATAACTTTTACAAATTAG
197755920 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
1 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
*
197755985 AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT-AAACCATA-ACCTTCATCAT
66 AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
197756048 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
131 AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
*
197756113 AAAAACGGGGCAAGAACGGACTTACTATGGACCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT
196 AAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT
* *
197756178 GGTCTTCAAAATTT-TGCCAAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTA
261 GGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTA
*
197756242 AACATTTAACTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
326 AACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
197756307 A-TTTACACTTTTGCCCCTAGGC-TTT-AAATAATTTTCATTCAATTTATTTTCACCTTAAGCCT
391 ATTTTACACTTTTG-CCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCT
197756369 AGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATGACAAAT
455 AGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAT
197756433 TTTATAACTTTTACAAATTAG
520 TTTATAACTTTTACAAATTAG
197756454 TCCTTTTTAGCA-TTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
1 TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
* * *
197756518 AATCTACCATTAAACATCAAAATACACATATTTATAACATGGTTCAAACCCTTGACGTTCATCAT
66 AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
*
197756583 AACTCAAATATAATGGTAGAAATTGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCAT
131 AACTCAAATA-AATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCAT
* *
197756648 TAAAAACGGGGCAAGAACGGACTTACTATGGACCTTGGAAAGCTTAAACAAAATCCTAGCCATGG
195 TAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGG
*
197756713 TGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTT
260 TGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTT
* * * * *
197756778 AAACATGTAATTACTAAATTTTATCATACTACGGTAAAAATTA-AATTTTGCCTCTAAATTTTAT
325 AAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTAT
* * * *
197756842 CTTATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCC
390 CAT-TTTACACTTTTGCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCC
* * * *
197756907 GAGTCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCATACTTTTATGACAGA
454 TAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAA
*
197756972 TTTTGTAAC
519 TTTTATAAC
197756981 ACCCAAACCC
Statistics
Matches: 4056, Mismatches: 177, Indels: 91
0.94 0.04 0.02
Matches are distributed among these distances:
529 7 0.00
530 96 0.02
531 146 0.04
532 225 0.06
533 443 0.11
534 367 0.09
535 575 0.14
536 406 0.10
537 229 0.06
538 107 0.03
539 103 0.03
540 852 0.21
541 499 0.12
542 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (540 bp):
TCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCAT
AATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCAT
AACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATT
AAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGT
GGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTA
AACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
ATTTTACACTTTTGCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTA
GCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATT
TTATAACTTTTACAAATTAG
Found at i:197757738 original size:30 final size:31
Alignment explanation
Indices: 197757682--197757744 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
197757672 CCTTTTCATA
197757682 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
197757713 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
197757743 TT
1 TT
197757745 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 13 0.42
31 18 0.58
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:197758076 original size:47 final size:47
Alignment explanation
Indices: 197757935--197758076 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
197757925 GCTTTATCAT
* * *
197757935 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
197757984 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
197758031 ATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
197758077 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
47 60 0.69
48 15 0.17
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:197758077 original size:24 final size:24
Alignment explanation
Indices: 197757935--197758076 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
197757925 GCTTTATCAT
*
197757935 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
197757960 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
197757984 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
197758007 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
197758031 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
197758055 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
197758077 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
23 39 0.35
24 59 0.54
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:197758151 original size:20 final size:20
Alignment explanation
Indices: 197758126--197758186 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
197758116 TTATGATTAC
197758126 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
197758146 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
197758166 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
197758186 A
1 A
197758187 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:197758261 original size:25 final size:25
Alignment explanation
Indices: 197758229--197758276 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
197758219 ATACATAAAC
* * *
197758229 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
197758254 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
197758277 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:197762393 original size:535 final size:538
Alignment explanation
Indices: 197760925--197763852 Score: 5265
Period size: 535 Copynumber: 5.5 Consensus size: 538
197760915 GCGTTACAAA
*
197760925 TTATAACTTTTAC-ATTTAGT-CTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
1 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
*
197760988 CTCTAACCATAAACATGCATAATCTACCATTAAACATCAAAATAC-CAAATTTATAACATAGTTC
66 CTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTC
*
197761052 AAACCCTAGACCTCCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA-GATT
131 AAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
197761116 TC-AAAACGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTA
196 TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTA
197761180 AACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTG
260 AACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT-
*
197761245 GCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAATTAAATT
324 GCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAATTACATT
197761310 TTTGCCCCTAAATTTTATCATATTTACAACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAA
389 TTTGCCCCTAAATTTTATCATATTTAC-ACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAA
197761375 TTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
453 TTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
*
197761440 ATCACACTTTTATGAAAAATT
518 ATCACACTTTTATGACAAATT
197761461 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
1 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
*
197761526 CTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTC
66 CTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTC
197761591 AAACCCTAGACCTTCATCATAACTCAAATAAATGG-A-AAATAGGTAGATCATGTTACAAGGATT
131 AAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
197761654 TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAA
196 TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAA
*
197761719 ACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTGC
261 ACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGC
197761784 TTTTATTTTGTTTATTTAAACATTTAATTACTAAA-TTTATCATACTATGGCAAAAATTACATTT
326 TTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGG-AAAAATTACATTT
*
197761848 TTGCCCCTAAATTTTATCAT-TTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATT
390 TTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATT
*
197761912 TATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAAT
455 TATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAAT
197761977 CACACTTTTATGACAAA-T
520 CACACTTTTATGACAAATT
197761995 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
1 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
*
197762060 CTCTAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTC
66 CTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTC
*
197762125 AAACCCTAGACCTCCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
131 AAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
197762190 TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTA
196 TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTA
197762255 AACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTG
260 AACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTG
197762320 CTTTTATTTT-TTT-TTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAATTACATTT
325 CTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAATTACATTT
197762383 TTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTT-TAAAATAATTTTCATTCAATT
390 TTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATT
197762447 TATTTTCAATTTAAGCCTAG-CGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAAT
455 TATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAAT
197762511 CACACTTTTATGACAAATT
520 CACACTTTTATGACAAATT
197762530 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
1 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
*
197762595 CTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTC
66 CTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTC
197762660 AAACCCTAG-CCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
131 AAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
197762724 TCAAAAACGTGAAAAATCATTAAAAACGGGGCAAGAACGACTTACTAT--AGCTTGGAAAGCTTA
196 TCAAAAACGTG-AAAATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTA
197762787 AACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTG
260 AACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT-
*
197762852 GCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATC--A-TATGGCAAAAATTA-AA
324 GCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGG-AAAAATTACAT
* *
197762913 TTTTGCCCCTAAATTTTATCTTATTTACACTTTTACCCTAGGCTTGTCAAATAATTTTCATTCAA
388 TTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAA
*
197762978 TTTATTTTCACTTTAAGCC-AGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
453 TTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
*
197763042 ATCACACTTTTATGGCAAATT
518 ATCACACTTTTATGACAAATT
197763063 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTG-AAATCACTTAGCAAAA-TTGTTT
1 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
*
197763126 CTCTAACCATAAACATGCATAATCTACCATTAAACATC-AAA-ACACAAATTTATAACATAGTTC
66 CTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTC
197763189 AAACCCTAGACC-TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
131 AAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
*
197763253 TCAAAAA-TTGAAAATCATTAAAAACGGGGCAAGAAC-ACTTACTATGGAGCTTGGAAAGCTTAA
196 TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAA
197763316 ACAAAACCCTAGCCATGGT-GTCTTCAAAATTTCGGCC-AGGGGTTGAAGATGACC-AAATTTGC
261 ACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGC
*
197763378 TTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTT-TCATACTA--CAAAAATTACATTTT
326 TTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAATTACATTTT
197763440 TG-CCCTAAATTTTATCAT-TTTACACTTTTACCCTA-GCTTGTAAAATAATTTTCATTCAATTT
391 TGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTT
*
197763502 ATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAAACC-CAATTTCCACTAAATC
456 ATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATC
197763566 ACACTTTTATGA-AAATT
521 ACACTTTTATGACAAATT
197763583 TTATAACTTTTACAAATTAGTCCTTTTTAGCA-TTTCATTGAAAATCACTTAGCAAAAGTTGTTT
1 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
* *
197763647 CTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACAAAAATTTATAACATGGTTC
66 CTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTC
*
197763712 AAACCCTA-ACCTTCATCATAACTCAAATAAGTGGTAGAAATAGGTAGATCATGTTACAAGGATT
131 AAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
197763776 TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTA
196 TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTA
197763841 AACAAAACCCTA
260 AACAAAACCCTA
197763853 TGTAACGCCC
Statistics
Matches: 2320, Mismatches: 37, Indels: 80
0.95 0.02 0.03
Matches are distributed among these distances:
519 8 0.00
520 53 0.02
521 111 0.05
522 53 0.02
523 111 0.05
524 75 0.03
525 7 0.00
526 66 0.03
527 44 0.02
528 37 0.02
529 89 0.04
530 5 0.00
531 43 0.02
532 147 0.06
533 159 0.07
534 302 0.13
535 405 0.17
536 137 0.06
537 198 0.09
538 184 0.08
539 86 0.04
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (538 bp):
TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT
CTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTC
AAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAA
ACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGC
TTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAATTACATTTT
TGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAATTT
ATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATC
ACACTTTTATGACAAATT
Found at i:197764244 original size:26 final size:26
Alignment explanation
Indices: 197764188--197764285 Score: 150
Period size: 26 Copynumber: 3.9 Consensus size: 26
197764178 AAATTGAATA
197764188 GGTTAGGTAAATG-TCCATGAT-A--
1 GGTTAGGTAAATGTTCCATGATAATG
197764210 GGTTAGGTAAATGTTCCATGATAATG
1 GGTTAGGTAAATGTTCCATGATAATG
*
197764236 GGTTAGGTAAATGTTTCATGATAATG
1 GGTTAGGTAAATGTTCCATGATAATG
*
197764262 GGTTAGGTAAATGTTTCATGATAA
1 GGTTAGGTAAATGTTCCATGATAA
197764286 GAATTTCATG
Statistics
Matches: 71, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
22 13 0.18
23 8 0.11
24 1 0.01
26 49 0.69
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
GGTTAGGTAAATGTTCCATGATAATG
Found at i:197765985 original size:27 final size:26
Alignment explanation
Indices: 197765923--197766028 Score: 133
Period size: 27 Copynumber: 4.0 Consensus size: 26
197765913 AATTATGATC
* **
197765923 TGGCTCTGCCACAATATCTAATCT-G
1 TGGCTCTGCCACATTATCTGTTCTGG
197765948 TGGCTCTGCCACATATATCTGTTCTGG
1 TGGCTCTGCCACAT-TATCTGTTCTGG
197765975 TGGCTCTGCCACGATTATCTGTATCTGG
1 TGGCTCTGCCAC-ATTATCTGT-TCTGG
* *
197766003 TGACTCTGTCACATTATCTGTTCTGG
1 TGGCTCTGCCACATTATCTGTTCTGG
197766029 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
25 13 0.18
26 13 0.18
27 29 0.40
28 17 0.24
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TGGCTCTGCCACATTATCTGTTCTGG
Found at i:197769376 original size:27 final size:27
Alignment explanation
Indices: 197769344--197769439 Score: 124
Period size: 29 Copynumber: 3.6 Consensus size: 27
197769334 GTGACGAGAT
197769344 TGGCACTAAGTGTGCGTGCTGGATATA
1 TGGCACTAAGTGTGCGTGCTGGATATA
197769371 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGG--ATATA
* * *
197769400 AGGCACTAAGTGTGCATGCTGGA-AAA
1 TGGCACTAAGTGTGCGTGCTGGATATA
*
197769426 TGACACT-AGTGTGC
1 TGGCACTAAGTGTGC
197769440 AAGCTGGAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
25 7 0.11
26 7 0.11
27 23 0.37
29 25 0.40
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (27 bp):
TGGCACTAAGTGTGCGTGCTGGATATA
Found at i:197769408 original size:29 final size:29
Alignment explanation
Indices: 197769345--197769424 Score: 128
Period size: 29 Copynumber: 2.8 Consensus size: 29
197769335 TGACGAGATT
*
197769345 GGCACTAAGTGTGCGTGCTGG--ATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
197769372 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
*
197769401 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCGTGCTGGAAA
197769425 ATGACACTAG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 21 0.43
29 28 0.57
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.25
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAA
Found at i:197769412 original size:56 final size:54
Alignment explanation
Indices: 197769345--197769449 Score: 147
Period size: 56 Copynumber: 1.9 Consensus size: 54
197769335 TGACGAGATT
* * * **
197769345 GGCACTAAGTGTGCGTGCTGGATATATGGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGA-AAATGACACT-AGTGTGCAAGCTGGAAATATAA
197769401 GGCACTAAGTGTGCATGCTGGAAAATGACACTAGTGTGCAAGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAAATGACACTAGTGTGCAAGCTGGAAA
197769450 AATCGGCACT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 15 0.34
55 8 0.18
56 21 0.48
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (54 bp):
GGCACTAAGTGTGCATGCTGGAAAATGACACTAGTGTGCAAGCTGGAAATATAA
Found at i:197769471 original size:27 final size:27
Alignment explanation
Indices: 197769344--197769471 Score: 120
Period size: 27 Copynumber: 4.7 Consensus size: 27
197769334 GTGACGAGAT
* * *
197769344 TGGCACTAAGTGTGCGTGCTGGATATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAA
*
197769371 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAA-A-A
*
197769400 AGGCACTAAGTGTGC-ATGCTGG-AAAA
1 TGGCACTAAGTGTGCGA-GCTGGAAAAA
* *
197769426 TGACACT-AGTGTGCAAGCTGGAAAAA
1 TGGCACTAAGTGTGCGAGCTGGAAAAA
*
197769452 TCGGCACT-GGTGTGCGAGCT
1 T-GGCACTAAGTGTGCGAGCT
197769472 CGAAGGGTAT
Statistics
Matches: 86, Mismatches: 9, Indels: 12
0.80 0.08 0.11
Matches are distributed among these distances:
25 12 0.14
26 12 0.14
27 40 0.47
28 2 0.02
29 20 0.23
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.24
Consensus pattern (27 bp):
TGGCACTAAGTGTGCGAGCTGGAAAAA
Found at i:197777187 original size:29 final size:29
Alignment explanation
Indices: 197777154--197777314 Score: 178
Period size: 29 Copynumber: 5.6 Consensus size: 29
197777144 GTGACGAGAT
*
197777154 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
197777183 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
197777212 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
197777241 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* ** * * ***
197777270 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
197777299 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
197777315 GGCTTAAATT
Statistics
Matches: 115, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 115 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:197783583 original size:20 final size:20
Alignment explanation
Indices: 197783554--197783598 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
197783544 GTACCAACTT
*
197783554 ACAACTTACCATAATCTTTC
1 ACAACATACCATAATCTTTC
*
197783574 ACAACATACCATAGTCTTTC
1 ACAACATACCATAATCTTTC
197783594 ACAAC
1 ACAAC
197783599 TTAAACTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.38, C:0.31, G:0.02, T:0.29
Consensus pattern (20 bp):
ACAACATACCATAATCTTTC
Found at i:197783795 original size:42 final size:42
Alignment explanation
Indices: 197783677--197783805 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
197783667 CACATAGTAC
* * * **
197783677 CATACCAATGCCATATCCCAGATATGGTCTTACATGGGATCT
1 CATATCAATTCCATATCCTAGATATGGTCTTACATGAAATCT
* *
197783719 CATATCAATTCCAATAGCCTAGCTATGGTCTTACATGAAATCT
1 CATATCAATTCC-ATATCCTAGATATGGTCTTACATGAAATCT
* * *
197783762 CATATCAATTTCATATCCTAGATATGGTCTTACACGTAATCT
1 CATATCAATTCCATATCCTAGATATGGTCTTACATGAAATCT
197783804 CA
1 CA
197783806 ACTAACCCTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 38 0.51
43 36 0.49
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (42 bp):
CATATCAATTCCATATCCTAGATATGGTCTTACATGAAATCT
Found at i:197786029 original size:29 final size:28
Alignment explanation
Indices: 197785941--197786043 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
197785931 TACTCAATCA
** *
197785941 CGCACACTTAGTGCCACGCGATTCAAGCC
1 CGCACACTTAGTGCCATAC-ATTCAAGCT
* * * *
197785970 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
*
197785999 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
*
197786028 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
197786044 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
28 2 0.03
29 56 0.97
ACGTcount: A:0.28, C:0.35, G:0.17, T:0.19
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:197791042 original size:40 final size:40
Alignment explanation
Indices: 197790997--197791165 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
197790987 CGGAATACAA
*
197790997 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
197791037 CCGGATATAACGAGTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
197791077 CCGGATTTAACAACTTGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
197791116 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
197791156 CCGGATATAA
1 CCGGATATAA
197791166 TTATTAGCAT
Statistics
Matches: 109, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
38 2 0.02
39 30 0.28
40 77 0.71
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:197791136 original size:79 final size:79
Alignment explanation
Indices: 197790997--197791202 Score: 227
Period size: 79 Copynumber: 2.6 Consensus size: 79
197790987 CGGAATACAA
* * * * *
197790997 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGAGTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTC-GGTCTTAGCCCGGATGTAACGACTAGCACAAATG
*
197791062 CCTTCGGGTATTAGC
65 CCTTCGGGTATTAAC
* * *
197791077 CCGGATTTAACAACTTGCACGAATGCCTTCGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATTG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGTCTTAGCCCGGATGTA-ACGACTAGCACAAATG
*
197791141 CCTTCGGGTCTTAAC
65 CCTTCGGGTATTAAC
** ** * *
197791156 CCGGATATAATTA-TTAGCATAAATGTCTTCGGACTTAGCCCGGATGT
1 CCGGATATAACAACTT-GCACGAATGCCTTCGGTCTTAGCCCGGATGT
197791203 CATTCAATTG
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
78 2 0.02
79 77 0.72
80 28 0.26
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (79 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGTCTTAGCCCGGATGTAACGACTAGCACAAATGC
CTTCGGGTATTAAC
Found at i:197791174 original size:40 final size:40
Alignment explanation
Indices: 197790997--197791200 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
197790987 CGGAATACAA
* * *
197790997 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
197791037 CCGGATATAACGAGTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
* *
197791077 CCGGATTTAACAACTTGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
197791116 CCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTCTTAGC
** * * *
197791156 CCGGATATAATTA-TTAGCATAAATGTCTTC-GGACTTAGC
1 CCGGATATAACAACTT-GCACAAATGCCTTCGGGTCTTAGC
197791195 CCGGAT
1 CCGGAT
197791201 GTCATTCAAT
Statistics
Matches: 135, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
39 45 0.33
40 90 0.67
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:197797057 original size:28 final size:28
Alignment explanation
Indices: 197797017--197797070 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
197797007 GTAGCAAGGA
197797017 GATGGTACACTTTAAGCACTCATCGGGT
1 GATGGTACACTTTAAGCACTCATCGGGT
197797045 GATGGTACACTTTAAGCACTCATCGG
1 GATGGTACACTTTAAGCACTCATCGG
197797071 TGTACAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (28 bp):
GATGGTACACTTTAAGCACTCATCGGGT
Found at i:197799088 original size:80 final size:80
Alignment explanation
Indices: 197798948--197799152 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
197798938 CGGAATACAA
* *
197798948 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
*
197799013 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
197799028 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GTCACTAGCACAAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACG--ACTAGCACAAA
*
197799091 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
** * ** * *
197799108 CCGGATATAATTATA-GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGAT
197799153 TCATTCAATT
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
78 1 0.01
79 28 0.26
80 77 0.73
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:197799137 original size:39 final size:40
Alignment explanation
Indices: 197798948--197799152 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
197798938 CGGAATACAA
* *
197798948 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTA-GCACAAATGCCTTCGGGTCTTAGC
* * *
197798988 CCGGATAGAA-CGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
197799028 CCGGATTTAA-CAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
197799068 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
197799108 CCGGATATAATTA-TAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
197799147 CCGGAT
1 CCGGAT
197799153 TCATTCAATT
Statistics
Matches: 139, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
39 28 0.20
40 110 0.79
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:197809548 original size:40 final size:40
Alignment explanation
Indices: 197809489--197809619 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
197809479 CGGGACTTTA
* * *
197809489 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
197809529 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
197809569 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
197809609 CCCGGATATAA
1 CCCGGATATAA
197809620 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:197809652 original size:39 final size:40
Alignment explanation
Indices: 197809506--197809656 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
197809496 ATCACGATTT
* * * *
197809506 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
197809546 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
197809586 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
197809625 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
197809657 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 31 0.32
40 64 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:197813529 original size:46 final size:45
Alignment explanation
Indices: 197813471--197813639 Score: 148
Period size: 46 Copynumber: 3.6 Consensus size: 45
197813461 ATTTCATAGG
197813471 CGATGCATGTCCCAGACATGTCTTACACTTGCTTACGTCCTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTTGCTTACGT-CTGAGGC
* * * *
197813517 CAATGCATGTCCCAGACATATCTTACA-TTAGC--ACTTGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTT-GCTTAC--GTCT-GAGGC
* * * * *
197813563 CGATGCCATTTCCCAGACATGGTCTTACACTTACTCT-CATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTTGCT-TACGT-CTGAGGC
197813611 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
197813640 AGCCCACAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 22
0.73 0.10 0.16
Matches are distributed among these distances:
44 2 0.02
45 4 0.04
46 46 0.47
47 26 0.27
48 16 0.16
49 3 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.30
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTTGCTTACGTCTGAGGC
Found at i:197813594 original size:94 final size:92
Alignment explanation
Indices: 197813471--197813642 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 92
197813461 ATTTCATAGG
* * **
197813471 CGATGCATGTCCCAGACATGTCTTACACTTGCT-TACGTCCTGAGGCCAATGCATGTCCCAGACA
1 CGATGCATGTCCCAGACATGTCTTACACTTACTCT-CATAATGAGGCCAATGCATGTCCCAGACA
*
197813535 TATCTTACATTAGCACTTGTCTCAATGC
65 TATCTTACACTAGCACTTGTCTCAATGC
* * *
197813563 CGATGCCATTTCCCAGACATGGTCTTACACTTACTCTCATAATGTGGCCGATGCATGTCCCAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTTACTCTCATAATGAGGCCAATGCATGTCCCAGAC
*
197813628 ATGTCTTACACTAGC
64 ATATCTTACACTAGC
197813643 CCACAATAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 5 0.07
93 13 0.19
94 49 0.72
95 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTTACTCTCATAATGAGGCCAATGCATGTCCCAGACAT
ATCTTACACTAGCACTTGTCTCAATGC
Found at i:197820882 original size:21 final size:21
Alignment explanation
Indices: 197820858--197820916 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
197820848 GGCCTGTTCC
*
197820858 CACGACCATGTCCCTGA-TACA
1 CACGACCATGTCCCTCAGT-CA
* * *
197820879 CACGAACGTGTGCCTCAGTCA
1 CACGACCATGTCCCTCAGTCA
197820900 CACGACCATGTTCCCTC
1 CACGACCATG-TCCCTC
197820917 TTCACATGGG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
21 23 0.79
22 6 0.21
ACGTcount: A:0.24, C:0.39, G:0.17, T:0.20
Consensus pattern (21 bp):
CACGACCATGTCCCTCAGTCA
Found at i:197822267 original size:42 final size:42
Alignment explanation
Indices: 197822215--197822331 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
197822205 TGTGATTTCA
197822215 TGTAAGACCATGTCTGGGACATTGGCATTGATACGAGATTCG
1 TGTAAGACCATGTCTGGGACATTGGCATTGATACGAGATTCG
* ** *
197822257 TGTAAAACCATGTCTGGGACATTGGCATCAATATGAGATTCG
1 TGTAAGACCATGTCTGGGACATTGGCATTGATACGAGATTCG
197822299 TGTAAGACCATAG-CTGGG-CTATTGGCATTGATA
1 TGTAAGACCAT-GTCTGGGAC-ATTGGCATTGATA
197822332 TACTATAACA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGATACGAGATTCG
Found at i:197823465 original size:21 final size:20
Alignment explanation
Indices: 197823435--197823473 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
197823425 ATGGTTGAAG
197823435 ATGAAATGGCATGATTTTTAT
1 ATGAAATGGCATG-TTTTTAT
*
197823456 ATGAACTGGCATGTTTTT
1 ATGAAATGGCATGTTTTT
197823474 GCTGCCTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.44
Consensus pattern (20 bp):
ATGAAATGGCATGTTTTTAT
Found at i:197826098 original size:598 final size:598
Alignment explanation
Indices: 197824958--197826145 Score: 2083
Period size: 598 Copynumber: 2.0 Consensus size: 598
197824948 GGAATTGACT
*
197824958 CTGTCTAAGAGTAAATTTGTCGTAATTAAGTGGAGTCAATTGCACGCTTAGAGATAGGGTGATAA
1 CTGTCTAAGAGTAAATTTGTCGTAATTAAGTGGAGTCAATTGCACACTTAGAGATAGGGTGATAA
** * * *
197825023 GATTTTGTTGGATTATGGTGAAACCTAATAAGGGGATCTAGAGATCTAGTTAATGCAACACTAGG
66 GATTTTGCCGGATTAGGGTGAAACCTAATAACGGGATCCAGAGATCTAGTTAATGCAACACTAGG
*
197825088 GCTTTAATTAGAAAGAGATTTCAATTAATCAACCTAGGGTTAGACGTTATTAGTCTCGAGAGAGA
131 GCATTAATTAGAAAGAGATTTCAATTAATCAACCTAGGGTTAGACGTTATTAGTCTCGAGAGAGA
197825153 TAATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATCGTCTGATTCAGAGTCA
196 TAATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATCGTCTGATTCAGAGTCA
*
197825218 AATAACAAGTTAAGTCTAGGTGGATTTTTCCCTGGGTATTGTCTTAATCAATCAAGTTTTCCCAA
261 AATAACAAGTGAAGTCTAGGTGGATTTTTCCCTGGGTATTGTCTTAATCAATCAAGTTTTCCCAA
*
197825283 AAGCTTTTTCCCAATTGTCTCTCTGCGTACCCTTAGTTTAGTTAATTAGTCTAGATAAACAAATC
326 AAGCTTTTTCCCAATTGTCTCTCTGCGCACCCTTAGTTTAGTTAATTAGTCTAGATAAACAAATC
197825348 CCTTAATTTTTAGGTTAGATAATAAAAAGAAAGTAATTACTAGTACTCTTGGTTCCTTTGGGTTC
391 CCTTAATTTTTAGGTTAGATAATAAAAAGAAAGTAATTACTAGTACTCTTGGTTCCTTTGGGTTC
* * ** * *
197825413 GACAGTCCGGTCTTGCTAAAGTTATACTACTGTTTGATAGGTACACTTGCCTTTATTGTGATAAT
456 GACAATCCGGTCTTGCTAAAGCTATACTACTGTTCAATAGGTACACTTGCCTTCATCGTGATAAT
* *
197825478 AGTTAGTTTCAAGAACGATTAATCATAAATCTTTAAAACCTGTCGCGAATATCACGTACCAAGTT
521 AGTTAGTTTCAAGAACGATTAATCATAAATCTTTAAAACCTGCCGCAAATATCACGTACCAAGTT
197825543 TTTGGGATAGACC
586 TTTGGGATAGACC
*
197825556 CTGTCTAAGAGTAAATTTGTCGTAATTAAGTGGAGTCGATTGCACACTTAGAGATAGGGTGATAA
1 CTGTCTAAGAGTAAATTTGTCGTAATTAAGTGGAGTCAATTGCACACTTAGAGATAGGGTGATAA
*
197825621 GATTTTGCCGGATTAGGGTGAAACCTAATAACGGGATCCATAGAT-TGAGTTAATGCAACACTAG
66 GATTTTGCCGGATTAGGGTGAAACCTAATAACGGGATCCAGAGATCT-AGTTAATGCAACACTAG
197825685 GGCATTAATTAGAAAGAGATTTCAATTAATCAACCTAGGGTTAGACGTTATTAGTCTCGAGAGAG
130 GGCATTAATTAGAAAGAGATTTCAATTAATCAACCTAGGGTTAGACGTTATTAGTCTCGAGAGAG
197825750 ATAATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATCGTCTGATTCAGAGTC
195 ATAATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATCGTCTGATTCAGAGTC
* * *
197825815 AAATAACAAGTGAAGTCTAGGTGGATTTTTCCTTGGGTATTTTCTTAATCAATCGAGTTTTCCCA
260 AAATAACAAGTGAAGTCTAGGTGGATTTTTCCCTGGGTATTGTCTTAATCAATCAAGTTTTCCCA
* * *
197825880 AAAGCTTTTTCCCAATTTTCTGTCTGTGCACCCTTAGTTTAGTTAATTAGTCTAGATAAACAAAT
325 AAAGCTTTTTCCCAATTGTCTCTCTGCGCACCCTTAGTTTAGTTAATTAGTCTAGATAAACAAAT
197825945 CTCC-TAATTTTTAGGTTAGATAATAAAAAGAAAGTAATTACTAGTACTCTTGGTTCCTTTGGGT
390 C-CCTTAATTTTTAGGTTAGATAATAAAAAGAAAGTAATTACTAGTACTCTTGGTTCCTTTGGGT
* *
197826009 TTGATAATCCGGTCTTGCTAAAGCTATACTACTGTTCAATAGGTACACTTGCCTTCATCGTGATA
454 TCGACAATCCGGTCTTGCTAAAGCTATACTACTGTTCAATAGGTACACTTGCCTTCATCGTGATA
* *
197826074 ATAGTTAGTTTCAAGAATGATTAATTATAAATCTTTAAAACCTGCCGCAAATATCACGTACCAAG
519 ATAGTTAGTTTCAAGAACGATTAATCATAAATCTTTAAAACCTGCCGCAAATATCACGTACCAAG
197826139 TTTTTGG
584 TTTTTGG
197826146 CTCTATTACC
Statistics
Matches: 559, Mismatches: 29, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
597 1 0.00
598 556 0.99
599 2 0.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (598 bp):
CTGTCTAAGAGTAAATTTGTCGTAATTAAGTGGAGTCAATTGCACACTTAGAGATAGGGTGATAA
GATTTTGCCGGATTAGGGTGAAACCTAATAACGGGATCCAGAGATCTAGTTAATGCAACACTAGG
GCATTAATTAGAAAGAGATTTCAATTAATCAACCTAGGGTTAGACGTTATTAGTCTCGAGAGAGA
TAATAATATAACTTAGGGATTTCTACGGATCAAGTCAAATGAATAAATCGTCTGATTCAGAGTCA
AATAACAAGTGAAGTCTAGGTGGATTTTTCCCTGGGTATTGTCTTAATCAATCAAGTTTTCCCAA
AAGCTTTTTCCCAATTGTCTCTCTGCGCACCCTTAGTTTAGTTAATTAGTCTAGATAAACAAATC
CCTTAATTTTTAGGTTAGATAATAAAAAGAAAGTAATTACTAGTACTCTTGGTTCCTTTGGGTTC
GACAATCCGGTCTTGCTAAAGCTATACTACTGTTCAATAGGTACACTTGCCTTCATCGTGATAAT
AGTTAGTTTCAAGAACGATTAATCATAAATCTTTAAAACCTGCCGCAAATATCACGTACCAAGTT
TTTGGGATAGACC
Found at i:197830087 original size:40 final size:39
Alignment explanation
Indices: 197830043--197830196 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
197830033 GTTCAAAACA
* * ** * *
197830043 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
197830083 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
197830123 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
197830162 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
197830197 TTCATTCACA
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 60 0.60
40 40 0.40
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:197830154 original size:39 final size:39
Alignment explanation
Indices: 197830073--197830196 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
197830063 TATGGTAACC
* *
197830073 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
197830113 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
197830152 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
197830191 CGCACA
1 CGCACA
197830197 TTCATTCACA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 60 0.78
40 17 0.22
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:197836660 original size:40 final size:40
Alignment explanation
Indices: 197836594--197836760 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
197836584 AAATTGAATG
* * *
197836594 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
197836633 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
197836673 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
197836713 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
197836753 ATATCCGG
1 ATATCCGG
197836761 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:197844659 original size:40 final size:40
Alignment explanation
Indices: 197844593--197844759 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
197844583 AAATTGAATG
* * *
197844593 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
197844632 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
197844672 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
197844712 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
197844752 ATATCCGG
1 ATATCCGG
197844760 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:197850039 original size:40 final size:41
Alignment explanation
Indices: 197849871--197850061 Score: 207
Period size: 40 Copynumber: 4.8 Consensus size: 41
197849861 ATAACCATGT
* *
197849871 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATGACTCA
*
197849911 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATGACTCA
*** *
197849952 -CACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACT-T
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATGACTCA
* **
197849991 GCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CA
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATGACTCA
* *
197850031 GCA-TAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATAT
197850062 CATTCAATTT
Statistics
Matches: 132, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
39 15 0.11
40 117 0.89
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (41 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATGACTCA
Found at i:197862818 original size:49 final size:49
Alignment explanation
Indices: 197862762--197862975 Score: 394
Period size: 49 Copynumber: 4.4 Consensus size: 49
197862752 TACATATATG
197862762 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
197862811 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
197862860 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
197862909 TGTGATAAGGCCCAATGGCCGATGTGGTGAATGTGAAAGTGT-TGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
197862957 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
197862976 TAATGCAAGA
Statistics
Matches: 160, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
48 24 0.15
49 136 0.85
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:197863127 original size:37 final size:37
Alignment explanation
Indices: 197863077--197863198 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
197863067 GGAATATGTT
*
197863077 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
197863114 CCGGGTAAGACCCGATGACTACGAGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
197863151 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
197863188 CCGGGTAAGAC
1 CCGGGTAAGAC
197863199 TTCTTTTATA
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 81 1.00
ACGTcount: A:0.26, C:0.20, G:0.34, T:0.20
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:197865314 original size:29 final size:29
Alignment explanation
Indices: 197865275--197865674 Score: 739
Period size: 29 Copynumber: 13.8 Consensus size: 29
197865265 CAAATTCCGT
197865275 TAATCGA-GCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
197865303 TAATCGAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
197865332 TAATCGAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
197865361 TAATCGAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
197865390 TAATCGAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
197865419 TAATCGAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
197865448 TAATCGAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
197865477 TAATCGAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
197865506 TAATCGAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
*
197865535 TAATTGAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
*
197865564 TAATCAAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
*
197865593 TAATCAAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
*
197865622 TAATTGAGGCACTATGTGTGCGAGATCAG
1 TAATCGAGGCACTATGTGTGCGAGATCAG
* *
197865651 TAATTGAGGCACTGTGTGTGCGAG
1 TAATCGAGGCACTATGTGTGCGAG
197865675 TTTTTCAACA
Statistics
Matches: 365, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
28 7 0.02
29 358 0.98
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
TAATCGAGGCACTATGTGTGCGAGATCAG
Found at i:197877506 original size:15 final size:16
Alignment explanation
Indices: 197877477--197877510 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
197877467 ATTTCATCTC
197877477 ATTTGCATTCAAGTTA
1 ATTTGCATTCAAGTTA
*
197877493 ATTTGCA-TCTAGTTA
1 ATTTGCATTCAAGTTA
197877508 ATT
1 ATT
197877511 AATTTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (16 bp):
ATTTGCATTCAAGTTA
Found at i:197887061 original size:54 final size:54
Alignment explanation
Indices: 197886979--197887082 Score: 199
Period size: 54 Copynumber: 1.9 Consensus size: 54
197886969 ATGAGATTGT
*
197886979 ATGGTGCACCATTATCTATTGTATCAGACAGAGACCTGAGATTCCCATCGCAAC
1 ATGGTGCACCATTATCTATTGTATCAGACAGAGACCTGAGATTCACATCGCAAC
197887033 ATGGTGCACCATTATCTATTGTATCAGACAGAGACCTGAGATTCACATCG
1 ATGGTGCACCATTATCTATTGTATCAGACAGAGACCTGAGATTCACATCG
197887083 TGATTCTGGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (54 bp):
ATGGTGCACCATTATCTATTGTATCAGACAGAGACCTGAGATTCACATCGCAAC
Found at i:197889690 original size:37 final size:37
Alignment explanation
Indices: 197889640--197889827 Score: 288
Period size: 37 Copynumber: 5.1 Consensus size: 37
197889630 ACCTTTAGCT
* * *
197889640 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
197889677 CGGACAAAATCTCCA-ACGTAGTCATTGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
197889713 CGGACAAAATCTCCACATGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
197889750 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * * *
197889787 CGGACATACTCTCCACGCGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
197889824 CGGA
1 CGGA
197889828 ATATATTTCC
Statistics
Matches: 139, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
36 33 0.24
37 106 0.76
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:197890042 original size:47 final size:47
Alignment explanation
Indices: 197889990--197890128 Score: 206
Period size: 47 Copynumber: 3.0 Consensus size: 47
197889980 TTTCACACTA
* * * *
197889990 GCCATTCGGCTTTACCACATATATGCACGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCACGTTCACATTCATCACATTG
* * *
197890037 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCACGTTCACATTCATCACATTG
*
197890084 GCCATTCGGCCTTATCACATATATGCACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCACGTTCACATTCATCACAT
197890129 AAAATCCTAA
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 81 1.00
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCACGTTCACATTCATCACATTG
Found at i:197892679 original size:80 final size:80
Alignment explanation
Indices: 197892595--197892743 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
197892585 TATGGTAACC
* * * *
197892595 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
197892659 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
197892675 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
197892740 CCGG
66 CCGG
197892744 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:197892685 original size:40 final size:38
Alignment explanation
Indices: 197892636--197892743 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
197892626 ATCACGATTT
*
197892636 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
197892676 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
197892716 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
197892744 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:197900859 original size:39 final size:39
Alignment explanation
Indices: 197900753--197900901 Score: 142
Period size: 39 Copynumber: 3.8 Consensus size: 39
197900743 ATCACGATTT
*
197900753 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
197900793 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTA
* * * **
197900832 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTC-A
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
197900871 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
197900902 TCATTCAATT
Statistics
Matches: 91, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
38 3 0.03
39 57 0.63
40 31 0.34
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:197903476 original size:29 final size:29
Alignment explanation
Indices: 197903443--197903545 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
197903433 GTGACGAGAT
197903443 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
197903472 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
197903501 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
197903530 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
197903546 AGTCGGAGGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:197911356 original size:29 final size:29
Alignment explanation
Indices: 197911323--197911424 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
197911313 GTGACGAGAT
197911323 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
197911352 TGGCACTAAGTGTGCGTGCTGGAAATAT-
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
197911380 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
197911409 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
197911425 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.38
29 40 0.62
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:197913647 original size:30 final size:30
Alignment explanation
Indices: 197913611--197913674 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
197913601 TTGACAATAC
197913611 TATAAGTTTGATTCCTTGGAATGGTATTAT
1 TATAAGTTTGATTCCTTGGAATGGTATTAT
197913641 TATAAGTTTGATTCCTTGGAATGGTATTAT
1 TATAAGTTTGATTCCTTGGAATGGTATTAT
197913671 TATA
1 TATA
197913675 CTGTATAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.47
Consensus pattern (30 bp):
TATAAGTTTGATTCCTTGGAATGGTATTAT
Found at i:197916538 original size:58 final size:58
Alignment explanation
Indices: 197916468--197916583 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
197916458 TTTCACGTTC
* * *
197916468 TTCCTTTCCCAAATAGATGATCTATTGAGTAACCCTATAAAACAATTAATAAATCATA
1 TTCCTTTCCCAAACAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
197916526 TTCCTTTCCCAAACAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
1 TTCCTTTCCCAAACAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
197916584 CCTCCACTCG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.42, C:0.21, G:0.06, T:0.31
Consensus pattern (58 bp):
TTCCTTTCCCAAACAGATGATCCATTAAGTAACCCTATAAAACAATTAATAAATCATA
Found at i:197920483 original size:25 final size:25
Alignment explanation
Indices: 197920455--197920502 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
197920445 TTATACCATG
* * *
197920455 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
197920480 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
197920503 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:197920605 original size:20 final size:20
Alignment explanation
Indices: 197920545--197920605 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
197920535 ATAAATATGG
*
197920545 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
197920565 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
197920585 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
197920605 T
1 T
197920606 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:197920682 original size:24 final size:24
Alignment explanation
Indices: 197920655--197920797 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
197920645 GAGGAAGTGA
197920655 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
197920679 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
197920703 AAAAGGACTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
197920726 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
197920750 GAAAGGGCTTTTGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
*
197920774 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
197920798 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
23 22 0.20
24 75 0.69
25 11 0.10
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:197920747 original size:47 final size:47
Alignment explanation
Indices: 197920655--197920776 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
197920645 GAGGAAGTGA
197920655 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
* *
197920703 AAAAGGACTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* *
197920750 GAAAGGGCTTTTGCCCCAGTTATAAAA
1 AAAAGGGCTTATGCCCCAGTTATAAAA
197920777 AGAGGCTAGG
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 47 0.68
48 22 0.32
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:197921024 original size:31 final size:31
Alignment explanation
Indices: 197920989--197921052 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
197920979 CGTTTACAGT
197920989 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
197921020 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
197921051 AA
1 AA
197921053 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:197932092 original size:40 final size:40
Alignment explanation
Indices: 197932047--197932213 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
197932037 CGGAATATAA
197932047 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
197932087 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
197932127 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
197932167 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
197932206 CCGGATAT
1 CCGGATAT
197932214 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Done.