Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 634 of 770
Found at i:198929899 original size:39 final size:39
Alignment explanation
Indices: 198929786--198929980 Score: 221
Period size: 39 Copynumber: 4.9 Consensus size: 39
198929776 CTCATTCAAA
* * * *
198929786 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT
* *
198929827 -GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
*
198929866 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAAT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * * * *
198929905 TGCCTTCGAGCTTAGCCCGGATATCACAATTCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * *
198929944 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
198929981 TTCATACACA
Statistics
Matches: 137, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 98 0.72
40 39 0.28
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:198929949 original size:78 final size:79
Alignment explanation
Indices: 198929786--198929969 Score: 253
Period size: 78 Copynumber: 2.3 Consensus size: 79
198929776 CTCATTCAAA
* * * *
198929786 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGAGACTTAACCCGGATAT
198929851 CACAACTCGCACAAT
65 CACAACTCGCACAAT
* * * *
198929866 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACAATTGCCTTCGAG-CTTAGCCCGGATATC
1 CGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGAGACTTAACCCGGATATC
* *
198929930 ACAATTCGCACATT
66 ACAACTCGCACAAT
*
198929944 TGCCTTCGGGCTTAGCCCGGATATCA
1 CGCCTTCGGGCTTAGCCCGGATATCA
198929970 CAATTCGCAC
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 51 0.55
79 32 0.34
80 10 0.11
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (79 bp):
CGCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGAGACTTAACCCGGATATC
ACAACTCGCACAAT
Found at i:198929982 original size:39 final size:39
Alignment explanation
Indices: 198929818--198929980 Score: 238
Period size: 39 Copynumber: 4.2 Consensus size: 39
198929808 TATGATAACC
* * *
198929818 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* *
198929858 CGCACAATCGCCTTCGGGCTTAGCCCGGATATCA-TATCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAAT-T
*
198929897 CGCACAATTGCCTTCGAGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
198929936 CGCACATTTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
198929975 CGCACA
1 CGCACA
198929981 TTCATACACA
Statistics
Matches: 111, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 92 0.83
40 18 0.16
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:198939973 original size:40 final size:40
Alignment explanation
Indices: 198939928--198940057 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
198939918 CGGAATATAA
198939928 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
198939968 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
198940008 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
198940048 CCGGATATAA
1 CCGGATATAA
198940058 TTTCCAGCTT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:198940072 original size:40 final size:40
Alignment explanation
Indices: 198939944--198940095 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
198939934 ATAAGCATGT
* * *
198939944 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAA-TGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCG-C-CA
* *
198939984 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
* ***
198940024 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
** * *
198940064 GCTTAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
198940096 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
39 2 0.02
40 88 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACCGCCA
Found at i:198943455 original size:24 final size:24
Alignment explanation
Indices: 198943428--198943482 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
198943418 TTTACTGCAA
198943428 TATTGAGTGGCTTGGCCACAACGT
1 TATTGAGTGGCTTGGCCACAACGT
* *
198943452 TATTGAGTGGCTTGGCCATAATGT
1 TATTGAGTGGCTTGGCCACAACGT
198943476 TATTGAG
1 TATTGAG
198943483 CAGCATGTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.35
Consensus pattern (24 bp):
TATTGAGTGGCTTGGCCACAACGT
Found at i:198943581 original size:63 final size:63
Alignment explanation
Indices: 198943452--198943601 Score: 165
Period size: 63 Copynumber: 2.4 Consensus size: 63
198943442 GCCACAACGT
* * * * *
198943452 TATTGAGTGGCTTGGCCATAATGTTATTGAGCAGCATGTCCACAACGTGCAGCTCGTCTGTAA
1 TATTGAGTGGCTTGGCCATAACGTTATTGAGCAGCATGACCACAACGTGCAACTCATCTATAA
* * ** * * * *
198943515 TATTGAGTGACTTGGCCATAACGTTATTGAGTAGTTTGACCACAACTTTCAACTTATCTATGA
1 TATTGAGTGGCTTGGCCATAACGTTATTGAGCAGCATGACCACAACGTGCAACTCATCTATAA
* *
198943578 TATTAAGTGGCTTGGCCACAACGT
1 TATTGAGTGGCTTGGCCATAACGT
198943602 GGTGTGTCAT
Statistics
Matches: 71, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (63 bp):
TATTGAGTGGCTTGGCCATAACGTTATTGAGCAGCATGACCACAACGTGCAACTCATCTATAA
Found at i:198954328 original size:40 final size:40
Alignment explanation
Indices: 198954279--198954459 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
198954269 CGGATGTAAC
* *
198954279 AACCAGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
198954319 AACCCGCACGAATGCCTTCGAGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
198954359 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
** **
198954399 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGTTATAAT
1 AACCCGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAAT
198954439 AACCCGCACGAATGCCTTCGG
1 AACCCGCACGAATGCCTTCGG
198954460 ATCCTAGTCC
Statistics
Matches: 127, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 5 0.04
40 119 0.94
41 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:198957045 original size:30 final size:29
Alignment explanation
Indices: 198956951--198957052 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
198956941 TATAGTGAAT
* * *
198956951 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
198956980 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
198957008 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
198957038 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
198957053 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:198963056 original size:40 final size:40
Alignment explanation
Indices: 198962948--198963157 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
198962938 CGGGATTTAA
* * * * *
198962948 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
198962988 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
198963028 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
198963068 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
198963108 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
198963148 CCGGATATAT
1 CCGGATATAT
198963158 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:198972698 original size:29 final size:29
Alignment explanation
Indices: 198972665--198972824 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
198972655 GTGACGAGAT
198972665 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
198972694 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
198972723 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
198972752 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
198972781 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
198972810 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
198972825 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:198980694 original size:29 final size:29
Alignment explanation
Indices: 198980661--198980820 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
198980651 GTGACGAGAT
198980661 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
198980690 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
198980719 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
198980748 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
198980777 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
198980806 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
198980821 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:198982521 original size:60 final size:58
Alignment explanation
Indices: 198982446--198982578 Score: 142
Period size: 60 Copynumber: 2.3 Consensus size: 58
198982436 ATTTAAGCCC
* * * * * *
198982446 GCACACATAGTGCCATACCCTTCGAG-TTCGCACACCCAGTGCCGTATTTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCC--ATATATTTCCAGCAT
* * **
198982506 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
198982564 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
198982579 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
58 28 0.45
60 33 0.53
61 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.29
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:198982536 original size:29 final size:29
Alignment explanation
Indices: 198982496--198982578 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
198982486 GCCGTATTTT
198982496 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
198982525 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
198982554 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
198982579 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:198983779 original size:21 final size:20
Alignment explanation
Indices: 198983737--198983790 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
198983727 AATGAACACT
*
198983737 TTTTTTTTC-TTT-TCTTTG
1 TTTTTCTTCATTTCTCTTTG
*
198983755 TTTTTCTTCATATTCTCTTTT
1 TTTTTCTTCAT-TTCTCTTTG
*
198983776 TTTTTTTTCATTTCT
1 TTTTTCTTCATTTCT
198983791 TTATTCTTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 8 0.27
19 1 0.03
20 6 0.20
21 15 0.50
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTTTCTTCATTTCTCTTTG
Found at i:198987238 original size:43 final size:43
Alignment explanation
Indices: 198987191--198987314 Score: 203
Period size: 43 Copynumber: 2.9 Consensus size: 43
198987181 TTGAATAACG
* *
198987191 ATGCTAATGTCCCAGGCATGATCTTACATGTAATCACAATACA
1 ATGCTAATGTCCCAGACATGGTCTTACATGTAATCACAATACA
* *
198987234 ATGCTAATGTCCCAGACATGGTCTTACATGTAATCATAATACG
1 ATGCTAATGTCCCAGACATGGTCTTACATGTAATCACAATACA
*
198987277 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 ATGCTAATGTCCCAGACATGGTCTTACATGTAATCACA
198987315 TCTCGGTAAT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCTAATGTCCCAGACATGGTCTTACATGTAATCACAATACA
Found at i:198987261 original size:86 final size:85
Alignment explanation
Indices: 198987155--198987314 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 85
198987145 TCGATTCCAT
* * * *
198987155 TGTCCTAGACAAGGTTTTACACGAAAT-TGAATAACGATGCTAATGTCCCAGGCATGATCTTACA
1 TGTCCCAGACAAGGTCTTACACGAAATAT-AAT-ACGATGCCAATGTCCCAGACATGATCTTACA
198987219 TGTAATCACAATACAATGCTAA
64 TGTAATCACAATACAATGCTAA
* * * *
198987241 TGTCCCAGACATGGTCTTACATGTAATCATAATACGATGCCAATGTCCCAGACATGGTCTTACAT
1 TGTCCCAGACAAGGTCTTACACGAAAT-ATAATACGATGCCAATGTCCCAGACATGATCTTACAT
198987306 GTAATCACA
65 GTAATCACA
198987315 TCTCGGTAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
86 60 0.94
87 3 0.05
88 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (85 bp):
TGTCCCAGACAAGGTCTTACACGAAATATAATACGATGCCAATGTCCCAGACATGATCTTACATG
TAATCACAATACAATGCTAA
Found at i:198991254 original size:30 final size:30
Alignment explanation
Indices: 198991218--198991377 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
198991208 GACAAGATTG
* * * * *
198991218 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
198991248 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
198991276 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
198991305 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
198991335 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
198991364 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
198991378 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:198991345 original size:59 final size:57
Alignment explanation
Indices: 198991218--198991377 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
198991208 GACAAGATTG
* * * * * *
198991218 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
198991276 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
198991335 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
198991378 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:198996983 original size:46 final size:46
Alignment explanation
Indices: 198996933--198997104 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
198996923 TGATTGAGCA
198996933 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
198996979 TCCGAACTCGTTGAGTTGAGTCC-AGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
198997023 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
198997071 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
198997105 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 5 0.05
46 78 0.74
47 5 0.05
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:198997087 original size:92 final size:93
Alignment explanation
Indices: 198996930--198997099 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
198996920 GGATGATTGA
* *
198996930 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
198996995 TGAGTCC-AGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
198997022 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
198997087 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
198997100 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 69 0.93
93 5 0.07
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:199000082 original size:15 final size:15
Alignment explanation
Indices: 199000062--199000116 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
199000052 GTATCTTGGG
199000062 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
199000077 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
199000092 TTTCTCTA-TCTTGA
1 TTTCTTTATTCTGGA
199000106 TTTCTTTATTC
1 TTTCTTTATTC
199000117 GGTTTCCTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
14 12 0.33
15 24 0.67
ACGTcount: A:0.13, C:0.16, G:0.09, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:199015879 original size:45 final size:45
Alignment explanation
Indices: 199015694--199016035 Score: 172
Period size: 45 Copynumber: 7.8 Consensus size: 45
199015684 AGTGAATTCA
* *
199015694 CAGATCTTATCTCCATGAGGTACCAATAGAGCAGATCGAAGACGG
1 CAGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGG
** * ** **
199015739 TGGATCTTATCTTCC-TGAGGTAGCAAGGGAGCAGATTTAAG-CCA
1 CAGATCTTATC-TCCATGAGGTAGCAATGGAGCAGATCGAAGACGG
* * * * * **
199015783 CTA-ACCTTGTCTCCCTGA-GCAGCAGTGGA-C---T-GAAGATTG
1 C-AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGG
* * *
199015822 TAGATTTTATCTCCATGAGGTAGCAATGGAGCAGATCGAGGACGG
1 CAGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGG
* ** * *
199015867 CAGATCTTATCTCTC-TGAGGTAGCAAGGGAGCAGATTTAAGTC-A
1 CAGATCTTATCTC-CATGAGGTAGCAATGGAGCAGATCGAAGACGG
* * * * * * * * **
199015911 CTAG-CCTTGTCTCCCTGA-GCAGCAGTGGAGTAG-GCTGAAAATTG
1 C-AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATC-GAAGACGG
* * *
199015955 TAGATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGATGG
1 CAGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGG
* * * *
199016000 TAGATCTTATCTCCCTGAGGTAGCAAGGGAACAGAT
1 CAGATCTTATCTCCATGAGGTAGCAATGGAGCAGAT
199016036 TTAAGCCACT
Statistics
Matches: 214, Mismatches: 64, Indels: 38
0.68 0.20 0.12
Matches are distributed among these distances:
38 4 0.02
39 12 0.06
40 9 0.04
41 1 0.00
42 1 0.00
43 27 0.13
44 33 0.15
45 122 0.57
46 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (45 bp):
CAGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGG
Found at i:199016011 original size:133 final size:130
Alignment explanation
Indices: 199015695--199016072 Score: 555
Period size: 133 Copynumber: 2.9 Consensus size: 130
199015685 GTGAATTCAC
* * *
199015695 AGATCTTATCTCCATGAGGTACCAATAGAGCAGATCGAAGACGGTGGATCTTATCT-TCCTGAGG
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGGTAGATCTTATCTCT-CTGAGG
*
199015759 TAGCAAGGGAGCAGATTTAAGCCACTAACCTTGTCTCCCTGAGCAGCAGT-G-GACTGAAGATTG
65 TAGCAAGGGAGCAGATTTAAGCCACTAACCTTGTCTCCCTGAGCAGCAGTGGAGACTGAAAATTG
199015822 T
130 T
* * *
199015823 AGATTTTATCTCCATGAGGTAGCAATGGAGCAGATCGAGGACGGCAGATCTTATCTCTCTGAGGT
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGGTAGATCTTATCTCTCTGAGGT
* *
199015888 AGCAAGGGAGCAGATTTAAGTCACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAAAT
66 AGCAAGGGAGCAGATTTAAGCCACTAACCTTGTCTCCCTGAGCAGCAGTGGAG-A--CTGAAAAT
199015953 TGT
128 TGT
* * *
199015956 AGATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGATGGTAGATCTTATCTCCCTGAGGT
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGGTAGATCTTATCTCTCTGAGGT
* * * *
199016021 AGCAAGGGAACAGATTTAAGCCACTAATCTTGTCTCCCTAAGCAGTAGTGGA
66 AGCAAGGGAGCAGATTTAAGCCACTAACCTTGTCTCCCTGAGCAGCAGTGGA
199016073 TCAGATTTAA
Statistics
Matches: 223, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
128 104 0.47
129 2 0.01
130 1 0.00
131 1 0.00
133 115 0.52
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (130 bp):
AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGGTAGATCTTATCTCTCTGAGGT
AGCAAGGGAGCAGATTTAAGCCACTAACCTTGTCTCCCTGAGCAGCAGTGGAGACTGAAAATTGT
Found at i:199016109 original size:42 final size:43
Alignment explanation
Indices: 199016031--199016114 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 43
199016021 AGCAAGGGAA
* * * *
199016031 CAGATTTAAGCCACTAATCTTGTCTCCCTAAGCAGTAGTGGAT
1 CAGATTTAAGCCACTAATATTATCTCCCTAAACAGTAATGGAT
*
199016074 CAGATTTAAGCCAC-CATATTATCTCCCTAAACAGTAATGGA
1 CAGATTTAAGCCACTAATATTATCTCCCTAAACAGTAATGGA
199016115 GTAGGCTGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 22 0.61
43 14 0.39
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
CAGATTTAAGCCACTAATATTATCTCCCTAAACAGTAATGGAT
Found at i:199016349 original size:133 final size:132
Alignment explanation
Indices: 199016113--199016351 Score: 286
Period size: 133 Copynumber: 1.8 Consensus size: 132
199016103 AACAGTAATG
* * ** * * *
199016113 GAGTAGGCTGAAGATTGTAGATCTTATCTCTTTAAGCAGTAGTAGAGCAGATTGAAGACGGCGAG
1 GAGTAGGCTGAAGATTGTAGATCTTATCTCATGAAGCAACAATAGAACAGATCGAAGACGGCGAG
* * *
199016178 TCTTATCTCCCTAAGGTAGCAAGGGAGCAGATTTAAGCCACTAGCCTTGTCTCCCTGAGCAGCAT
66 TCTTATCTCCCTAAGGTAGCAAGGAAGAAGATTCAAGCCACTAGCCTTGTCTCCCTGAGCAGCAT
199016243 TA
131 TA
* * *
199016245 GAGTAGGCTGAAGATTGTAGATCTTATCTCCATGAGGTAACAATGGAACAGATCGAAGACGGCG-
1 GAGTAGGCTGAAGATTGTAGATCTTATCT-CATGAAGCAACAATAGAACAGATCGAAGACGGCGA
* *
199016309 GATCTTATCTTCCC-GAGGTAG-TAGAGAAGAAGATTCAAGCCAC
65 G-TCTTATC-TCCCTAAGGTAGCAAG-GAAGAAGATTCAAGCCAC
199016352 CAACCTCATC
Statistics
Matches: 88, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
132 32 0.36
133 52 0.59
134 4 0.05
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (132 bp):
GAGTAGGCTGAAGATTGTAGATCTTATCTCATGAAGCAACAATAGAACAGATCGAAGACGGCGAG
TCTTATCTCCCTAAGGTAGCAAGGAAGAAGATTCAAGCCACTAGCCTTGTCTCCCTGAGCAGCAT
TA
Found at i:199016494 original size:178 final size:179
Alignment explanation
Indices: 199016252--199016658 Score: 548
Period size: 178 Copynumber: 2.3 Consensus size: 179
199016242 TTAGAGTAGG
* * * * ** * *
199016252 CTGAAGATTGTAGATCTTATCTCCATGAGGTAACAATGGAACAGATC-GAAGACGGCGGATCTTA
1 CTGAAGATTGTAGATCTTGTCTCCTTGAGATAGCAATGGGGCAGATCAAAAGACGGCGAATCTTA
*
199016316 TCTTCCCGAGGTAGTAGAGAAGAAGATTCAAGCCACCAACCTCATCTCTCTAAGGTAGCAAAGAA
66 TCTTCCCGAGGTAGTAGAGAAGAAGATTCAAACCACCAACCTCATCTCTCTAAGGTAGCAAAGAA
* * *
199016381 GCAGGCTAAAGATTGTAGTCTTATCTTCCTGAGGCAGTAAGGGAGCAGA
131 GCAGGCTAAAGATTGTAGTCTTATCTTCCTAAGGCAGGAAGAGAGCAGA
* *
199016430 CTGAAGATTGTAGATCTTGTCTCTTTGAGATAGCAGTGGGGCAGATCAAAAG-CGGCGAATCTTA
1 CTGAAGATTGTAGATCTTGTCTCCTTGAGATAGCAATGGGGCAGATCAAAAGACGGCGAATCTTA
* * * * * * * * *
199016494 TTTTCTCGAGGTAGTAGGGAAGCAGATTTAAACCACCAACCTCATCTCTCTGAGGTAGTAAGGGA
66 TCTTCCCGAGGTAGTAGAGAAGAAGATTCAAACCACCAACCTCATCTCTCTAAGGTAGCAAAGAA
* *
199016559 GCAGGCTAAAGATTGTAGTCTTATCTTCCTAAGGTAGGAATAGAGCAGA
131 GCAGGCTAAAGATTGTAGTCTTATCTTCCTAAGGCAGGAAGAGAGCAGA
* * *
199016608 CTGAAGATTGTAGATATTGTTTCCTTGAGATAGCAATGGGGCAGGTCAAAA
1 CTGAAGATTGTAGATCTTGTCTCCTTGAGATAGCAATGGGGCAGATCAAAA
199016659 CAAACTTTAT
Statistics
Matches: 198, Mismatches: 30, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
178 195 0.98
179 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (179 bp):
CTGAAGATTGTAGATCTTGTCTCCTTGAGATAGCAATGGGGCAGATCAAAAGACGGCGAATCTTA
TCTTCCCGAGGTAGTAGAGAAGAAGATTCAAACCACCAACCTCATCTCTCTAAGGTAGCAAAGAA
GCAGGCTAAAGATTGTAGTCTTATCTTCCTAAGGCAGGAAGAGAGCAGA
Found at i:199016767 original size:45 final size:44
Alignment explanation
Indices: 199016665--199017145 Score: 270
Period size: 45 Copynumber: 10.7 Consensus size: 44
199016655 AAAACAAACT
* * *
199016665 TTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTAA-AATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAATC
* *
199016708 TTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGATAACGAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAAC-AATC
* **
199016753 TTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTATAAATAAACAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG------AT-AACA-ATC
* * * * *
199016805 TTATCTCTCTAAAGTTGTAGTAGAGCAGA-TCATAGCA-AAC---C
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AG-ATAACAATC
* * *
199016846 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAA-AGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAATC
* * * *
199016889 TTATCTCCCTGAAGTTGCAGCGGAGCA-AGCTGAAGATAGCGTATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGATAAC-AATC
* * * *
199016934 TTATTTTCTTGAAGTTGCAGTGGAACAGATTGAAGATACAAATAAACAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG------AT-AACA-ATC
* * * * *
199016986 TTATCTCTCTAAAGTTGCAGTAGAGCAGA-T---CATAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAAC-AATC
* * * * * *
199017027 CTATCTCCTTGAAGTTGTAGTTGAGCAGGTTGAA-ATTACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAA-TC
* * * *
199017071 TTATTTCCCTGAAGTTGTAGCGGAGCAGATTGAAGACAACTAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAAC-AATC
* **
199017116 CTATCTTTCTGAAGTTGCAGTGGAGC-GATT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT
199017146 TAAAATGATG
Statistics
Matches: 331, Mismatches: 71, Indels: 71
0.70 0.15 0.15
Matches are distributed among these distances:
41 56 0.17
42 6 0.02
43 70 0.21
44 37 0.11
45 93 0.28
46 3 0.01
47 1 0.00
51 8 0.02
52 57 0.17
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAATC
Found at i:199016868 original size:93 final size:92
Alignment explanation
Indices: 199016752--199017043 Score: 287
Period size: 93 Copynumber: 3.2 Consensus size: 92
199016742 GATAACGAAT
* *
199016752 CTTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTAA
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG-TATAAATAAACAGATCTTATCTCTCTAA
*
199016817 AGTTGTAGTAGAGCAGATCATAGCAAAC
65 AGTTGCAGTAGAGCAGATCATAGCAAAC
* * * *
199016845 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG--T---T-AA-AG-TCTTATCTCCCTGAA
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTATAAATAAACAGATCTTATCTCTCTAAA
* * ** ** *
199016902 GTTGCAGCGGAGCAAGCTGAAGATAGCGTAT
66 GTTGCA--GTAG--AGCAGATCATAGCAAAC
* * * *
199016933 CTTATTTTCTTGAAGTTGCAGTGGAACAGATTGAAGATACAAATAAACAGATCTTATCTCTCTAA
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG-TATAAATAAACAGATCTTATCTCTCTAA
199016998 AGTTGCAGTAGAGCAGATCATAGCAAATC
65 AGTTGCAGTAGAGCAGATCATAGCAAA-C
*
199017027 C-TATCTCCTTGAAGTTG
1 CTTATCTCCCTGAAGTTG
199017044 TAGTTGAGCA
Statistics
Matches: 154, Mismatches: 31, Indels: 28
0.72 0.15 0.13
Matches are distributed among these distances:
84 18 0.12
85 2 0.01
86 5 0.03
87 1 0.01
88 42 0.27
90 1 0.01
93 57 0.37
94 2 0.01
95 5 0.03
96 2 0.01
97 19 0.12
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (92 bp):
CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTATAAATAAACAGATCTTATCTCTCTAAA
GTTGCAGTAGAGCAGATCATAGCAAAC
Found at i:199016979 original size:181 final size:180
Alignment explanation
Indices: 199016659--199017139 Score: 689
Period size: 181 Copynumber: 2.6 Consensus size: 180
199016649 CAGGTCAAAA
* * *
199016659 CAAACTTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTAAAATCTTATCTCCCTGAAGTT
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTT
* * * * * *
199016724 GCAGTGGAACAGACTGAAGATAACGAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGC
66 GCAGCGGAGCAGACTGAAGATAACGTATCTTATTT-TCTGAAGTTGCAGTGGAACAGATTGAAGA
* *
199016789 TATAAATAAACAGATCTTATCTCTCTAAAGTTGTAGTAGAGCAGATCATAG
130 TACAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAG
199016840 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTT
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTT
*
199016905 GCAGCGGAGCA-AGCTGAAGATAGCGTATCTTATTTTCTTGAAGTTGCAGTGGAACAGATTGAAG
66 GCAGCGGAGCAGA-CTGAAGATAACGTATCTTATTTTC-TGAAGTTGCAGTGGAACAGATTGAAG
199016969 ATACAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAG
129 ATACAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAG
* * * * *
199017021 CAAATCC-TATCTCCTTGAAGTTGTAGTTGAGCAGGTTGAAATTACAAGTCTTATTTCCCTGAAG
1 CAAA-CCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-AAGTCTTATCTCCCTGAAG
* * * *
199017085 TTGTAGCGGAGCAGATTGAAGACAAC-TAATCCTATCTTTCTGAAGTTGCAGTGGA
64 TTGCAGCGGAGCAGACTGAAGATAACGT-ATCTTAT-TTTCTGAAGTTGCAGTGGA
199017140 GCGATTTAAA
Statistics
Matches: 271, Mismatches: 22, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
180 2 0.01
181 203 0.75
182 61 0.23
183 5 0.02
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (180 bp):
CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTT
GCAGCGGAGCAGACTGAAGATAACGTATCTTATTTTCTGAAGTTGCAGTGGAACAGATTGAAGAT
ACAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAG
Found at i:199018663 original size:3 final size:3
Alignment explanation
Indices: 199018605--199018653 Score: 82
Period size: 3 Copynumber: 16.3 Consensus size: 3
199018595 TTTCAAATTA
199018605 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACTT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
199018650 ATT A
1 ATT A
199018654 ACGTATTATT
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.05
3 40 0.91
4 2 0.05
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:199021202 original size:4 final size:4
Alignment explanation
Indices: 199021193--199021237 Score: 90
Period size: 4 Copynumber: 11.2 Consensus size: 4
199021183 CCCTTTTCTA
199021193 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
199021238 CACGTTTGCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:199022958 original size:22 final size:22
Alignment explanation
Indices: 199022933--199022974 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
199022923 TTTTTCCTTG
* *
199022933 TTAATTGTTATAAAATATAATT
1 TTAATTATCATAAAATATAATT
*
199022955 TTAATTATCATCAAATATAA
1 TTAATTATCATAAAATATAA
199022975 ATGAGCTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (22 bp):
TTAATTATCATAAAATATAATT
Found at i:199025423 original size:2 final size:2
Alignment explanation
Indices: 199025416--199025459 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
199025406 ATATGTGCAA
* * *
199025416 AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT A- AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
199025457 AT A
1 AT A
199025460 CTAATATAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (2 bp):
AT
Found at i:199025552 original size:2 final size:2
Alignment explanation
Indices: 199025539--199025666 Score: 58
Period size: 2 Copynumber: 67.0 Consensus size: 2
199025529 GGAATTTAAA
* * * *
199025539 AT AT AC AT AT AT AT AT AT AT GT AT AT A- AT AGT AT TT A- AG A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
* * * * *
199025579 AT AT AT AC AT A- AG AA AT AT AT A- ACT A- AT AGC AT AT AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT AT
* *
199025620 A- AT AT AT AT AT AT AT A- AT AC AC AT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
199025659 AT AC AT AT
1 AT AT AT AT
199025667 TAGAAATGAT
Statistics
Matches: 96, Mismatches: 18, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
1 9 0.09
2 83 0.86
3 4 0.04
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (2 bp):
AT
Found at i:199025647 original size:24 final size:23
Alignment explanation
Indices: 199025610--199025663 Score: 90
Period size: 24 Copynumber: 2.3 Consensus size: 23
199025600 AACTAATAGC
*
199025610 ATATATACATAATATATATATAT
1 ATATACACATAATATATATATAT
199025633 ATAATACACATAATATATATATAT
1 AT-ATACACATAATATATATATAT
199025657 ATATACA
1 ATATACA
199025664 TATTAGAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 7 0.24
24 22 0.76
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (23 bp):
ATATACACATAATATATATATAT
Found at i:199026212 original size:18 final size:18
Alignment explanation
Indices: 199026186--199026222 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
199026176 GAAAAAAAAG
*
199026186 GAAGAGAGAGGGAAGAGA
1 GAAGAGAGAGAGAAGAGA
*
199026204 GAAGGGAGAGAGAAGAGA
1 GAAGAGAGAGAGAAGAGA
199026222 G
1 G
199026223 GGGAAGGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (18 bp):
GAAGAGAGAGAGAAGAGA
Found at i:199026530 original size:13 final size:14
Alignment explanation
Indices: 199026491--199026530 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
199026481 TTTTTGGTTT
199026491 TTTTTTTGCTGGAAA
1 TTTTTTT-CTGGAAA
199026506 TTTTTTTCTGGAAA
1 TTTTTTTCTGGAAA
199026520 TTTTTTT-TGGA
1 TTTTTTTCTGGA
199026531 GCTGGAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 4 0.16
14 14 0.56
15 7 0.28
ACGTcount: A:0.17, C:0.05, G:0.17, T:0.60
Consensus pattern (14 bp):
TTTTTTTCTGGAAA
Found at i:199026555 original size:14 final size:15
Alignment explanation
Indices: 199026490--199026557 Score: 63
Period size: 15 Copynumber: 4.5 Consensus size: 15
199026480 TTTTTTGGTT
199026490 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
199026505 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
199026520 TTTTTTTTGGAGCTGGAA
1 TTTTTTTT---GCTGGAA
199026538 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
199026550 TTTTTTTT
1 TTTTTTTT
199026558 TTTGCTTCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
12 1 0.02
13 5 0.11
14 10 0.23
15 16 0.36
16 6 0.14
18 2 0.05
19 4 0.09
ACGTcount: A:0.15, C:0.06, G:0.19, T:0.60
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:199026561 original size:33 final size:33
Alignment explanation
Indices: 199026498--199026559 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
199026488 TTTTTTTTTT
*
199026498 GCTGGAAATTTTTTTCTGGAAATTTTTTTTGGA
1 GCTGGAAATTTTTTGCTGGAAATTTTTTTTGGA
**
199026531 GCTGG-AATTTTTTGCTGGATTTTTTTTTT
1 GCTGGAAATTTTTTGCTGGAAATTTTTTTT
199026560 TGCTTCCCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 21 0.81
33 5 0.19
ACGTcount: A:0.16, C:0.06, G:0.21, T:0.56
Consensus pattern (33 bp):
GCTGGAAATTTTTTGCTGGAAATTTTTTTTGGA
Found at i:199026902 original size:22 final size:22
Alignment explanation
Indices: 199026877--199026921 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
199026867 TTTAATAAAA
199026877 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
199026899 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
199026921 A
1 A
199026922 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:199031499 original size:22 final size:22
Alignment explanation
Indices: 199031473--199031517 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
199031463 TTTTAATAAA
199031473 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
199031495 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
199031517 A
1 A
199031518 CAAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:199031830 original size:35 final size:35
Alignment explanation
Indices: 199031756--199031860 Score: 185
Period size: 35 Copynumber: 3.0 Consensus size: 35
199031746 GGGGTGTGTG
*
199031756 ATGGTGCTGGCGGCAGACAGCAT-GGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
*
199031790 GTGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
199031825 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
199031860 A
1 A
199031861 GAGGCAAGTG
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
34 21 0.31
35 46 0.69
ACGTcount: A:0.23, C:0.12, G:0.49, T:0.16
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:199032643 original size:47 final size:50
Alignment explanation
Indices: 199032569--199032711 Score: 170
Period size: 54 Copynumber: 2.8 Consensus size: 50
199032559 ATATGACCTA
**
199032569 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAC-AA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAATAAC
199032616 AGG-TACAACTCACCTCTCGCAATATGAGTT-ACTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-AC--AAA-TAAC
*
199032670 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
199032712 ACAGGAATTG
Statistics
Matches: 82, Mismatches: 3, Indels: 16
0.81 0.03 0.16
Matches are distributed among these distances:
46 2 0.02
47 35 0.43
48 2 0.02
51 2 0.02
53 3 0.04
54 36 0.44
55 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAAATAAC
Found at i:199032984 original size:70 final size:70
Alignment explanation
Indices: 199032871--199033721 Score: 1409
Period size: 70 Copynumber: 11.9 Consensus size: 70
199032861 CATAAATTGA
*
199032871 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
199032936 AACAT
66 AACAT
*
199032941 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
199033006 AACATAAATT
66 AAC----A-T
*
199033016 GAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
199033081 GAAACAT
64 GAAACAT
*
199033088 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGA-TTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
199033152 AACAT
66 AACAT
*
199033157 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
199033222 AACATAAATT
66 AAC----A-T
*
199033232 GAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
199033297 GAAACAT
64 GAAACAT
*
199033304 AAATTGAAATTACCTCAACGTGTCTTGAGG-TTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
199033368 AACAT
66 AACAT
199033373 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
199033438 AACATAAATT
66 AAC----A-T
*
199033448 GAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTG
1 -AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
199033513 AAACAT
65 AAACAT
199033519 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
199033584 AACAT
66 AACAT
* *
199033589 AAATTGAAATTACCTTAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
199033654 AACAT
66 AACAT
*
199033659 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
199033722 CTGTCACTTG
Statistics
Matches: 739, Mismatches: 20, Indels: 44
0.92 0.02 0.05
Matches are distributed among these distances:
69 135 0.18
70 393 0.53
71 1 0.00
72 3 0.00
73 2 0.00
74 3 0.00
75 3 0.00
76 67 0.09
77 132 0.18
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAT
Found at i:199033218 original size:216 final size:216
Alignment explanation
Indices: 199032794--199033721 Score: 1611
Period size: 216 Copynumber: 4.3 Consensus size: 216
199032784 TTTGAAACAT
*
199032794 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
*
199032859 AACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATG
66 AAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
199032924 AGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCC
124 AGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCA
199032989 ATATGAGTTGATTTTGAAACATAAATTG
189 ATATGAGTTGATTTTGAAACATAAATTG
*
199033017 AAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
1 -AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
*
199033082 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGA-TTGA
65 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
199033146 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGA
130 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
199033211 GTTGATTTTGAAACATAAATTG
195 GTTGATTTTGAAACATAAATTG
*
199033233 AAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
1 -AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
*
199033298 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGG-TTAACTCACCTCTCGCAATATGAGTTGA
65 AAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
199033362 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
130 TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
199033427 GTTGATTTTGAAACATAAATTG
195 GTTGATTTTGAAACATAAATTG
*
199033449 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
199033514 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
199033579 TTTGAAACATAAATTGAAATTACCTTAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGAG
131 TTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
199033644 TTGATTTTGAAAC----A-T-
196 TTGATTTTGAAACATAAATTG
*
199033659 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
199033722 CTGTCACTTG
Statistics
Matches: 690, Mismatches: 12, Indels: 18
0.96 0.02 0.03
Matches are distributed among these distances:
210 61 0.09
211 1 0.00
212 1 0.00
215 121 0.18
216 386 0.56
217 52 0.08
219 1 0.00
220 1 0.00
224 66 0.10
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (216 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTGAAACATAAATTG
Found at i:199033273 original size:146 final size:143
Alignment explanation
Indices: 199032771--199033721 Score: 1537
Period size: 147 Copynumber: 6.6 Consensus size: 143
199032761 TCAACTCACC
199032771 TATGAGTTGATTTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCT
1 TATGAGTTGA--TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCT
* *
199032836 CTCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGG
64 CTCGCAATATGAGTTGATTTTGAAAC---AATTG-AAATTGAAATTACCTCAACGTGTCTTGAGG
199032901 CTCAACTCACCTCTCGCAA
125 CTCAACTCACCTCTCGCAA
199032920 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
199032985 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCAATATGAGTTGATTTTGAAAC---AATTG-AAATTGAAATTACCTCAACGTGTCTTGAGGCT
199033050 CAACTCACCTCTCGCAA
127 CAACTCACCTCTCGCAA
*
199033067 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
199033132 CGCAATATGA-TTGATTTTGAAAC-A-T-AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAAC
66 CGCAATATGAGTTGATTTTGAAACAATTGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAAC
*
199033193 TCACCTCTCGCCA
131 TCACCTCTCGCAA
*
199033206 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
199033271 CACCTCTCGCAATATGAGTTGATTTTGAAAC-A-T-AAATTGAAATTACCTCAACGTGTCTTGAG
59 CACCTCTCGCAATATGAGTTGATTTTGAAACAATTGAAATTGAAATTACCTCAACGTGTCTTGAG
*
199033333 G-TTAACTCACCTCTCGCAA
124 GCTCAACTCACCTCTCGCAA
199033352 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
199033417 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTGAAATTACCTCAACGTGTCTTGAGGCTT
66 CGCAATATGAGTTGATTTTGAAAC---AATTGAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
199033482 AACTCACCTCTCGCAA
128 AACTCACCTCTCGCAA
199033498 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
199033563 CGCAATATGAGTTGATTTTGAAAC-A-T-AAATTGAAATTACCTTAACGTGTCTTAAGGCTCAAC
66 CGCAATATGAGTTGATTTTGAAACAATTGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAAC
199033625 TCACCTCTCGCAA
131 TCACCTCTCGCAA
199033638 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
199033703 CGCAATGTGAGTTGATTTT
66 CGCAATATGAGTTGATTTT
199033722 CTGTCACTTG
Statistics
Matches: 774, Mismatches: 13, Indels: 39
0.94 0.02 0.05
Matches are distributed among these distances:
139 133 0.17
140 129 0.17
141 3 0.00
142 3 0.00
143 2 0.00
144 2 0.00
145 30 0.04
146 207 0.27
147 255 0.33
149 10 0.01
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (143 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACAATTGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAAC
TCACCTCTCGCAA
Found at i:199044003 original size:40 final size:40
Alignment explanation
Indices: 199043958--199044124 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
199043948 CGGAATATAA
199043958 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
199043998 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
199044038 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
199044078 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
199044117 CCGGATAT
1 CCGGATAT
199044125 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:199044108 original size:80 final size:79
Alignment explanation
Indices: 199043958--199044124 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
199043948 CGGAATATAA
* *
199043958 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
199044023 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
199044038 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
199044100 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
199044117 CCGGATAT
1 CCGGATAT
199044125 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:199044971 original size:17 final size:19
Alignment explanation
Indices: 199044948--199044993 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
199044938 AAGAAGCATG
199044948 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
199044966 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
199044984 AATCATGCTC
1 AATCATGCTC
199044994 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:199046931 original size:29 final size:29
Alignment explanation
Indices: 199046892--199046970 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
199046882 CTTAATAATC
* *
199046892 AACCACGCACACCTAGTGCCATGTACTTCA
1 AACC-CGCACACTTAGTGCCATGCACTTCA
* *
199046922 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCACTTCA
*
199046951 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
199046971 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 40 0.93
30 3 0.07
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.22
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTCA
Found at i:199054131 original size:40 final size:40
Alignment explanation
Indices: 199053909--199054131 Score: 264
Period size: 39 Copynumber: 5.7 Consensus size: 40
199053899 GCTACTCGTT
*
199053909 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
199053949 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
*
199053989 CAAATGCCTTCGGATCTTAGTCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
199054028 CAAATGCCTTCGGATCTTAG-TCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
199054067 CGAATGCCTTC-GATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
199054107 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
199054132 CATCATTCGA
Statistics
Matches: 164, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
38 9 0.05
39 82 0.50
40 69 0.42
41 4 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:199058436 original size:40 final size:40
Alignment explanation
Indices: 199058348--199058477 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
199058338 ATGCTGGAAA
* * *
199058348 TTATATACGGGTTAAGACCCGAAGGCAATT-GTGCTAG-CGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTC-G
* *
199058388 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
* * *
199058428 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
199058468 TTATATCCGG
1 TTATATCCGG
199058478 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
Found at i:199060621 original size:40 final size:40
Alignment explanation
Indices: 199060555--199060721 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
199060545 AAATTGAATG
* * *
199060555 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
199060594 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
199060634 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
199060674 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
199060714 ATATCCGG
1 ATATCCGG
199060722 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:199068599 original size:40 final size:40
Alignment explanation
Indices: 199068533--199068699 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
199068523 AAATTGAATG
* * *
199068533 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
199068572 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
199068612 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
199068652 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
199068692 ATATCCGG
1 ATATCCGG
199068700 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:199072361 original size:68 final size:70
Alignment explanation
Indices: 199072289--199072486 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
199072279 ACACCCTGTA
* * * *
199072289 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
199072351 ATAAAT
65 ATAAAT
*
199072357 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
199072422 ATAAAT
65 ATAAAT
*
199072428 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
199072487 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:199072400 original size:41 final size:41
Alignment explanation
Indices: 199072355--199072472 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
199072345 TGAAAGATAA
199072355 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
199072396 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
199072426 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
199072467 ATGTAG
1 ATGTAG
199072473 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:199072412 original size:71 final size:71
Alignment explanation
Indices: 199072323--199072486 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
199072313 GAGATGTATC
199072323 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
199072388 AGGACA
66 AGGACA
199072394 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
199072459 AGGACA
66 AGGACA
199072465 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
199072487 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:199079922 original size:68 final size:70
Alignment explanation
Indices: 199079850--199080047 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
199079840 ACACCCTGTA
* * * *
199079850 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
199079912 ATAAAT
65 ATAAAT
*
199079918 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
199079983 ATAAAT
65 ATAAAT
*
199079989 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
199080048 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:199079961 original size:41 final size:41
Alignment explanation
Indices: 199079916--199080033 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
199079906 TGAAAGATAA
199079916 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
199079957 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
199079987 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
199080028 ATGTAG
1 ATGTAG
199080034 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:199079973 original size:71 final size:71
Alignment explanation
Indices: 199079884--199080047 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
199079874 GAGATGTATC
199079884 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
199079949 AGGACA
66 AGGACA
199079955 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
199080020 AGGACA
66 AGGACA
199080026 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
199080048 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:199082824 original size:19 final size:19
Alignment explanation
Indices: 199082800--199082837 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
199082790 GAAATGAATA
*
199082800 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
199082819 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
199082838 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:199083110 original size:2 final size:2
Alignment explanation
Indices: 199083103--199083135 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
199083093 AAAGTAGCTA
199083103 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
199083136 AACAGATAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:199083769 original size:19 final size:19
Alignment explanation
Indices: 199083745--199083783 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
199083735 ATATATATAT
199083745 ATAAAATAAAGAAAAT-AAA
1 ATAAAATAAA-AAAATGAAA
199083764 ATAAAATAAAAAAATGAAA
1 ATAAAATAAAAAAATGAAA
199083783 A
1 A
199083784 ATGAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (19 bp):
ATAAAATAAAAAAATGAAA
Found at i:199084053 original size:9 final size:8
Alignment explanation
Indices: 199084023--199084067 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
199084013 AGAGGTTAGG
*
199084023 TTTTTTTC
1 TTTTTTTA
199084031 TTTTTCTTCA
1 TTTTT-TT-A
199084041 TTTTTTTA
1 TTTTTTTA
199084049 TTTTTTTA
1 TTTTTTTA
199084057 -TTTTTTA
1 TTTTTTTA
199084064 TTTT
1 TTTT
199084068 GGGTTGTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
7 7 0.21
8 17 0.52
9 4 0.12
10 5 0.15
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:199084418 original size:44 final size:44
Alignment explanation
Indices: 199084355--199085315 Score: 1565
Period size: 44 Copynumber: 22.4 Consensus size: 44
199084345 CCCCGTCTAA
* *
199084355 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
199084399 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
199084443 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
199084487 TACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
199084531 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
199084575 TACAGAGATGCCAAATC----ATTTTCGATCTGCTCT-CGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
199084614 TACAGAGACG-CAAATCTGTTATCTTCGATCTGCTCT-C-CCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199084655 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT-C-TCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199084697 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCTCCG-CGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
199084736 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
199084780 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
** *
199084824 TACAGAGACGCCAAATCTACTAT-TTCGATCTGCTCTCCACCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199084867 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
199084911 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199084955 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199084999 TACAGAGATGCCAAATC----ATCTTCGATCTGCTCT-CG-CGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199085037 TACAGAGATGCCAAAT-TGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199085080 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCT-CGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199085123 TACAGAGACGCCAAATCTGTTATCTTCGACCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199085167 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199085211 TACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199085255 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
199085299 TACAGAGACGCCAAATC
1 TACAGAGACGCCAAATC
199085316 ATCTTGGATT
Statistics
Matches: 864, Mismatches: 32, Indels: 42
0.92 0.03 0.04
Matches are distributed among these distances:
38 41 0.05
39 37 0.04
40 31 0.04
41 30 0.03
42 64 0.07
43 119 0.14
44 542 0.63
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.28
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:199085075 original size:300 final size:301
Alignment explanation
Indices: 199084355--199085329 Score: 1596
Period size: 300 Copynumber: 3.2 Consensus size: 301
199084345 CCCCGTCTAA
* *
199084355 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGCTACAGAGACGCCAAATCTGTT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATC----
199084420 ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
62 ATCTTCGATCTGCTCTCCG-CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCC
* *
199084485 GCTACGGAGACGCCAAATCTGTTATCTTCGATCTGCTCTTCACCGCTACAGAGACGCCAAATCTG
126 GCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTC-TCGCCGCTACAGAGACGCCAAATCTG
* *
199084550 TTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATC----ATTTTCGATCTGCTCTCGC
190 TTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCGC
199084611 CGCTACAGAGACG-CAAATCTGTTATCTTCGATCTGCTCT-C-CCGC
255 CGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
199084655 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT-C-TCGCTACAGAGATGCCAAATCATCT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCATCT
199084718 TCGATCTGCTCTCCGCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTAC
66 TCGATCTGCTCTCCGCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTAC
**
199084783 AGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTACTAT-
131 AGAGACGCCAAATCTGTTATCTTCGATCTGCTCT-CGCCGCTACAGAGACGCCAAATCTGTTATC
*
199084847 TTCGATCTGCTCTCCACCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCT
195 TTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTC-GCCGCT
199084912 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
259 ACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
199084955 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAAATCATCT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCATCT
*
199085020 TCGATCTGCTCT-CGCGCTACAGAGATGCCAAAT-TGTTATCTTCGATCTGCTCTCCGCCGCTAC
66 TCGATCTGCTCTCCGCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTAC
*
199085083 AGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCGCCGCTACAGAGACGCCAAATCTGTTATCT
131 AGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCGCCGCTACAGAGACGCCAAATCTGTTATCT
* *
199085148 TCGACCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGTCGCTA
196 TCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCT-CGCCGCTA
*
199085213 CAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
260 CAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
199085255 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCATCT
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCATCT
* *
199085320 TGGATTTGCT
66 TCGATCTGCT
199085330 TCAATGTAAA
Statistics
Matches: 638, Mismatches: 24, Indels: 26
0.93 0.03 0.04
Matches are distributed among these distances:
292 36 0.06
293 108 0.17
294 19 0.03
296 16 0.03
297 15 0.02
298 46 0.07
299 29 0.05
300 311 0.49
301 22 0.03
302 36 0.06
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (301 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCATCT
TCGATCTGCTCTCCGCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGCTAC
AGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCGCCGCTACAGAGACGCCAAATCTGTTATCT
TCGATCTGCTCTCCGCCGCTACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCGCCGCTAC
AGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:199085636 original size:61 final size:64
Alignment explanation
Indices: 199085522--199085644 Score: 182
Period size: 61 Copynumber: 2.0 Consensus size: 64
199085512 TCATGTATCC
*
199085522 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGAATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
199085586 ATGCTTTATGTCAAATAATTAGAATG-T-T-A-TGAAATGAATCAAATGTTCCTAACTAAATG
1 ATGC-TTATGCCAAATAATTAGAATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATG
199085645 AATGGTTATG
Statistics
Matches: 55, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
61 29 0.53
62 1 0.02
63 1 0.02
64 5 0.09
65 19 0.35
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGAATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:199097345 original size:19 final size:19
Alignment explanation
Indices: 199097321--199097358 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
199097311 GAAATGAATA
*
199097321 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
199097340 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
199097359 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:199097634 original size:2 final size:2
Alignment explanation
Indices: 199097627--199097656 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
199097617 GTAGCTAAAT
199097627 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
199097657 CATAAACAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:199102886 original size:10 final size:9
Alignment explanation
Indices: 199102860--199102890 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
199102850 TTATGTGTTC
199102860 TTTATTTTA
1 TTTATTTTA
199102869 TTTATTTTA
1 TTTATTTTA
199102878 TTCTATTTTA
1 TT-TATTTTA
199102888 TTT
1 TTT
199102891 TTCACAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:199107978 original size:45 final size:45
Alignment explanation
Indices: 199107840--199108012 Score: 163
Period size: 45 Copynumber: 3.8 Consensus size: 45
199107830 ACCATCAAAG
* * * * * * **
199107840 GATGTCATAGTGTGTCTCAGCTATGGTATTAATCCTTTTTACCAT
1 GATGTCATAGTGTCTTTCAGCTATGGTCTTACTCATTTATGTCAT
* *
199107885 GAT-TCCATAGTGTCTTTTAG-TCATTGTCTTACTCATTTATGTCAT
1 GATGT-CATAGTGTCTTTCAGCT-ATGGTCTTACTCATTTATGTCAT
* *
199107930 GATGTGATAGTGTCTTTCAGCTATGGTCTTACTCATCTT-TGTCCT
1 GATGTCATAGTGTCTTTCAGCTATGGTCTTACTCAT-TTATGTCAT
** *
199107975 GATGTCATAGCATCTTTCAGCTATGGTCATACTCATTT
1 GATGTCATAGTGTCTTTCAGCTATGGTCTTACTCATTT
199108013 TAGGTGTATA
Statistics
Matches: 105, Mismatches: 18, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
44 4 0.04
45 97 0.92
46 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.17, T:0.44
Consensus pattern (45 bp):
GATGTCATAGTGTCTTTCAGCTATGGTCTTACTCATTTATGTCAT
Found at i:199108003 original size:22 final size:23
Alignment explanation
Indices: 199107942--199108006 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 23
199107932 TGTGATAGTG
* *
199107942 TCTTTCAGCTATGGTCTTACTCA
1 TCTTTCAGCTATGGTCATACGCA
***
199107965 TCTTTGTCCTGAT-GTCATA-GCA
1 TCTTTCAGCT-ATGGTCATACGCA
199107987 TCTTTCAGCTATGGTCATAC
1 TCTTTCAGCTATGGTCATAC
199108007 TCATTTTAGG
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
21 2 0.06
22 15 0.48
23 12 0.39
24 2 0.06
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (23 bp):
TCTTTCAGCTATGGTCATACGCA
Found at i:199110370 original size:40 final size:40
Alignment explanation
Indices: 199110310--199110513 Score: 234
Period size: 40 Copynumber: 5.1 Consensus size: 40
199110300 CGGGATTCAA
* ** *
199110310 CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
* *** *
199110350 CCGGATTTGGTAACTTGCAC-AATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
199110390 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
199110430 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * *
199110470 CCGGATATAATC-ACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGC
199110510 CCGG
1 CCGG
199110514 GTATCATTCA
Statistics
Matches: 144, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
40 141 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:199114932 original size:40 final size:40
Alignment explanation
Indices: 199114791--199114975 Score: 153
Period size: 40 Copynumber: 4.7 Consensus size: 40
199114781 TCGAATGATG
* *
199114791 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * * *
199114831 TCCGGACTAGGAT-CCTAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
* * *
199114871 TTCGCGCTAAG-CCTGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
199114910 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
199114951 -CCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
199114976 AGCGAGTCGT
Statistics
Matches: 111, Mismatches: 29, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
39 29 0.26
40 73 0.66
41 9 0.08
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:199117449 original size:38 final size:39
Alignment explanation
Indices: 199117354--199117539 Score: 276
Period size: 37 Copynumber: 4.9 Consensus size: 39
199117344 GAATGTTCGA
199117354 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
199117393 ATG--ATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
199117430 ATGATA-CCGGGCTAAGCCCGAAGGCAATTGTG-GAG-T
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* *
199117466 ATGATACCCGGG-TAAGCCCGAAGGCAATTGTGCGAGTT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* * *
199117504 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 ATGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
199117540 GGTTACCATA
Statistics
Matches: 137, Mismatches: 3, Indels: 13
0.90 0.02 0.08
Matches are distributed among these distances:
36 27 0.20
37 48 0.35
38 37 0.27
39 8 0.06
40 17 0.12
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
Found at i:199117515 original size:75 final size:76
Alignment explanation
Indices: 199117354--199117539 Score: 281
Period size: 75 Copynumber: 2.5 Consensus size: 76
199117344 GAATGTTCGA
199117354 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATCCGGGCTAAGCCCGAAGGCAA
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATCCGGGCTAAGCCCGAAGGCAA
199117419 TTGTGCGAGCT
66 TTGTGCGAGCT
199117430 ATGATA-CCGGGCTAAGCCCGAAGGCAATTGTG-GAG-TATGATACCCGGG-TAAGCCCGAAGGC
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGAT--CCGGGCTAAGCCCGAAGGC
*
199117491 AATTGTGCGAGTT
64 AATTGTGCGAGCT
* * *
199117504 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 ATGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
199117540 GGTTACCATA
Statistics
Matches: 101, Mismatches: 4, Indels: 9
0.89 0.04 0.08
Matches are distributed among these distances:
73 6 0.06
74 33 0.33
75 40 0.40
76 21 0.21
77 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.22
Consensus pattern (76 bp):
ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATCCGGGCTAAGCCCGAAGGCAA
TTGTGCGAGCT
Found at i:199117555 original size:40 final size:39
Alignment explanation
Indices: 199117354--199117569 Score: 264
Period size: 37 Copynumber: 5.6 Consensus size: 39
199117344 GAATGTTCGA
* *
199117354 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
199117393 ATGAT--CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
199117430 ATGAT-ACCGGGCTAAGCCCGAAGGCAATTGTG-GAG-T
1 ATGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
199117466 ATGATACCCGGG-TAAGCCCGAAGGCAATTGTGCGAGTT
1 ATGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* * * * *
199117504 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTT
1 ATGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTT
** *
199117544 ACCATAACCGGGCTATGTCCCGAAGG
1 ATGATAACCGGGCTAAG-CCCGAAGG
199117570 TGTTTTGAAC
Statistics
Matches: 160, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
36 26 0.16
37 48 0.30
38 37 0.23
39 9 0.06
40 40 0.25
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.21
Consensus pattern (39 bp):
ATGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:199126226 original size:79 final size:82
Alignment explanation
Indices: 199126086--199126270 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
199126076 TCGAATGATG
* * *
199126086 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
199126150 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
199126166 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
199126228 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
199126246 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
199126271 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:199126278 original size:40 final size:40
Alignment explanation
Indices: 199126087--199126278 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
199126077 CGAATGATGT
* * * * *
199126087 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
199126127 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
199126167 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
199126206 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
199126246 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
199126279 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:199126301 original size:79 final size:79
Alignment explanation
Indices: 199126086--199126303 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
199126076 TCGAATGATG
* * * * ** *
199126086 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
199126149 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
199126166 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
199126231 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
199126246 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
199126304 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:199130868 original size:40 final size:40
Alignment explanation
Indices: 199130845--199131054 Score: 393
Period size: 40 Copynumber: 5.2 Consensus size: 40
199130835 TTTCGCCCGA
*
199130845 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
199130885 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
*
199130925 ATGTATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
*
199130965 TTATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
199131005 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
199131045 ATATATCACT
1 ATATATCACT
199131055 CTCAATTCTC
Statistics
Matches: 165, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 165 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
Found at i:199133242 original size:47 final size:47
Alignment explanation
Indices: 199133129--199134131 Score: 1704
Period size: 47 Copynumber: 21.4 Consensus size: 47
199133119 CCCTTCGGGA
* * * *
199133129 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
199133175 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
* *
199133222 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
199133269 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
199133316 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
199133363 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
199133410 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
199133457 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
199133504 CTTATCTCATATATGCACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
199133551 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
199133598 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
199133645 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
199133692 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
199133739 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
199133786 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
199133833 CTTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
199133880 CTTATCTCATATATGCACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
199133927 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
199133974 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
199134021 CTTGTCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
199134068 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
199134115 CTTATCACATATATACA
1 CTTATCACATATATACA
199134132 TCTCATACAT
Statistics
Matches: 905, Mismatches: 49, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
46 41 0.05
47 864 0.95
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:199142105 original size:40 final size:39
Alignment explanation
Indices: 199141940--199142123 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
199141930 AAATTGAATG
* * *
199141940 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
199141980 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
199142020 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
199142060 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
199142099 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
199142124 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:199142148 original size:80 final size:81
Alignment explanation
Indices: 199141980--199142168 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
199141970 GCTGGAAATT
* * * *
199141980 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
199142045 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
199142061 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
199142124 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
199142140 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
199142169 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:199149299 original size:40 final size:40
Alignment explanation
Indices: 199149254--199149383 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
199149244 CGGAATATAA
199149254 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
199149294 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
199149334 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
199149374 CCGGATATAA
1 CCGGATATAA
199149384 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:199149398 original size:40 final size:40
Alignment explanation
Indices: 199149270--199149421 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
199149260 ATAAGCATGT
* * *
199149270 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
199149310 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
199149350 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
199149390 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
199149422 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:199149404 original size:80 final size:80
Alignment explanation
Indices: 199149270--199149421 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
199149260 ATAAGCATGT
* *
199149270 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
199149335 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
199149350 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
199149413 CCCGGATAT
64 CCCGGATAT
199149422 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:199153276 original size:969 final size:969
Alignment explanation
Indices: 199151124--199154385 Score: 4631
Period size: 969 Copynumber: 3.3 Consensus size: 969
199151114 GGACGTCACA
* * * * *
199151124 ACTCGTTTGATTCTTTCTCCATATCTTGCAGCTACCAAACCACCAAACATAGCCCTACCACAAGA
1 ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
* * *
199151189 AATTAAAAGTAACAAATAATAATATTTAAGCACTGTCCAAGCTTCTTATGCAATATTTTAAAACT
66 AATTAAAAGTAACAAATAATAATATTTAAGCACTGTCCAAGCTTCTTATGCAATGTTCTAAAAAT
* * * *
199151254 GCTAAAATAAAATCCTAAAATGCAACTAAGTTCACTCAAGTACAAAAAATTGACCCAGCCTAAAG
131 GCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAAG
*
199151319 GCATGAATTATAACTATTTTCAAGAGTTTTCATTCACTATGACAGAATGGTTTATTTTCATTTTT
196 GCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTTT
* * *
199151384 AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCATCTGGTCATATTTAAGTAATCAGTTTATA
261 AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATCATGTTTAAGTAATCAGTTTATA
* * *
199151449 AGTATACGAACAGTCTTCTATGTCTAAAGATCATTTGCATTTTAATTAAGAAATAAGAACAATCG
326 AGTATGCGAACAGTCTTCTATGTCTAGAGATCATTTGCATTTTAATTAAGAAATAAGAACAATCA
* *
199151514 AATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTGAAGGTTTGATTGAA
391 AATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGAA
* * *
199151579 AGTAATCCCAACCTTATGAGATTTAGATCATCGGCTG-GAAAATAAAATTCCAAACCAAAATATT
456 AGTAATCCCAACCTTATGAGATTTGGCTCATGGGCTGAG-AAATAAAATT----ACC--------
* *
199151643 ATCTAAAATTGTGTTCAACTACTTTAATTCAATCTTTCGAAGGAACAGTAATGGAAATAACAAAA
508 A---AAAATTGTGTTCAACTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAACAAAA
* * * * *
199151708 CAACTTTGGGAAATAGCTTTCGCTTGCCCAGTCCACACTTCGGAAACACAACATCTTGTGATGGC
570 GAACTTTGGGAAACAGCTTTCGCTTGCCCAGTCCACATTTC--AGA-A-AACATCTTGTTATGGC
199151773 TAAGAAGGACTGTCTTCGACTTTCTTTCCCTTACATAGCCAAACCCTTATTCACGCCTAAGGATC
631 TAAGAAGGACTGTCTTCGACTTTCTTTCCCTTACATAGCCAAACCCTTATTCACGCCTAAGGATC
* *
199151838 TCTCCCACTTTTTGTTTTTTGTCGTTTTGTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTA
696 TCTCCCACTTTTTG---TTCGTCGTTTAGTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTA
* * * * *
199151903 GGGTAAATCCAAAAACCCATGTTTATCTTCTCCTATATTTAAATTCCTTTTTCAACAAACTAAGA
758 GGGTAAATCCCAAAACCCATATTTATCTTCTCCTCTATTTAAATT-CTTTTTCAACAACCCAAGA
* * * * * * *
199151968 TTATCTTCTCTATTTTTTAGGTAGATTTTTTTGGTGCAAGTAAAGTTGGCCTAAAACTGGCTTGT
822 TTATCTTCTCTATTTTTTAGGCAGATTTTTCTGGTACAAGTAAAGTTGGACTGAAACTGGCATGC
* *
199152033 GTTAAGTGTTAACTCAGTCTTC-CTGACATTG-C-C-ACATCCATTTTGGCAAAATGTCCAACTA
887 GTTGAGTGTTAACTCAGTCTTCTC-GACATTGCCACAACATCCATTTTGGCAAAATGTCCAACTC
* *
199152094 TTCGCCCCAGCAAATGTTC
951 TTTGCCCCAGCAAAAGTTC
* * *
199152113 ACTCCTTTGTTTCTTTCTCCATATACAACACCTACCAAACCACCAACCATAGCCCTACCACAAGA
1 ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
* *
199152178 AATTAAAAGTAGCAAATAATAATATTTAAGCACTGTCCAAGCTTCTTACGCAATGTTCTAAAAAT
66 AATTAAAAGTAACAAATAATAATATTTAAGCACTGTCCAAGCTTCTTATGCAATGTTCTAAAAAT
* * *
199152243 GCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAATACAAACAATTGACCTAACCTAAAG
131 GCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAAG
* * * * *
199152308 GCATGAATTATAACTCTTTTCAAGAGTTTTCATTCACTACGACAGAATGGTTTATTTTAAGTTTT
196 GCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTTT
* *
199152373 AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATTATGTTTAAGTAATCAATTTATA
261 AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATCATGTTTAAGTAATCAGTTTATA
* *
199152438 AGTATGCGAACAGTCTTCTATGTCTAGAGATCATTTGCATTTTAATTAAGAAATAAGAATAATCT
326 AGTATGCGAACAGTCTTCTATGTCTAGAGATCATTTGCATTTTAATTAAGAAATAAGAACAATCA
199152503 AATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGAA
391 AATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGAA
* *
199152568 AGTAATCCCAACCTTATGAGATTTGGCTCATGGGCTGAGAAATAAAATT-CC-GAAATTGTGTTT
456 AGTAATCCCAACCTTATGAGATTTGGCTCATGGGCTGAGAAATAAAATTACCAAAAATTGTGTTC
* *
199152631 AACTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAACAAAAGGACTTTGGTAAACAG
521 AACTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAACAAAAGAACTTTGGGAAACAG
* * *
199152696 CTTTCGCTTGCCCAGTCTACATTTCAG-AAACATGTCTTGTTATGGCTAAGAAGGACTGTGTTCA
586 CTTTCGCTTGCCCAGTCCACATTTCAGAAAACA--TCTTGTTATGGCTAAGAAGGACTGTCTTCG
**
199152760 ACTTTCTTTCCCTTACATAGCCAAACTGTTATTCACGCCTAAGGATCTCTCCCACTTTTTGTTCG
649 ACTTTCTTTCCCTTACATAGCCAAACCCTTATTCACGCCTAAGGATCTCTCCCACTTTTTGTTCG
*
199152825 TCGTTTACTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTAGGGTAAATCCCAAAACCCATA
714 TCGTTTAGTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTAGGGTAAATCCCAAAACCCATA
* * *
199152890 TTTATATTCTCCTCTGTTTAAATTCTTTTCTCAATAACCCAA-ATTATCTTCTACTATTTTTTAG
779 TTTATCTTCTCCTCTATTTAAATTCTTTT-TCAACAACCCAAGATTATCTTCT-CTATTTTTTAG
* * *
199152954 GCGGATTTTTCTGGTACAAGTAAAGTTGGACTGAAACTAGCATACGTTGAGTGTTAACTCAGTCT
842 GCAGATTTTTCTGGTACAAGTAAAGTTGGACTGAAACTGGCATGCGTTGAGTGTTAACTCAGTCT
* * * *
199153019 TCTCGACATTGCCACAACATCCAATTTGGCAAAATGTCTAACTCTTTGCCCCAGCAAACGTTT
907 TCTCGACATTGCCACAACATCCATTTTGGCAAAATGTCCAACTCTTTGCCCCAGCAAAAGTTC
199153082 ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
1 ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
* *
199153147 AATTAAAAGTAACAAATAATAATATTTAAGCA-TCGTCCAAGCTTCTTTTGCAATGTTCTACAAA
66 AATTAAAAGTAACAAATAATAATATTTAAGCACT-GTCCAAGCTTCTTATGCAATGTTCTAAAAA
199153211 TGCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAA
130 TGCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAA
*
199153276 GGCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAACGGTTTATTTTCATTTT
195 GGCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTT
* * * * *
199153341 TGAGCTTCAAAATAGTTCAAAAACGTAAAATCATTCTTCTGATGATGTTTGAGTAATCAGTTTAT
260 TAAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATCATGTTTAAGTAATCAGTTTAT
* * * * *
199153406 AAGTATGTGAACAGTCTTTTATGTCTAGAGATCATTTCCATTTTTATTAAGTAATAAGAACAATC
325 AAGTATGCGAACAGTCTTCTATGTCTAGAGATCATTTGCATTTTAATTAAGAAATAAGAACAATC
199153471 AAATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGA
390 AAATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGA
* *
199153536 AAGTAATCCCAACCTTATGATATTTGGCTAATGGGCTGAGAAATAAAATTCCAAACCAAAATATT
455 AAGTAATCCCAACCTTATGAGATTTGGCTCATGGGCTGAGAAATAAAATT----ACC-AAA-A--
* *
199153601 ATCTGACGTTGTGCTCATCTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAATAAAA
512 AT-T---G-TGT--TCAACTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAACAAAA
* * * *
199153666 GAACTTTGGGAAACAGCTATCGCTTGCGCAGTCCAGACTTTGGCAGCATAACATCTTGTTATGGC
570 GAACTTTGGGAAACAGCTTTCGCTTGCCCAGTCCACA-TTT--CAG-AAAACATCTTGTTATGGC
* ** * * * **
199153731 TAAGAAGGATTCCCTTCGACTTTCTTACTCTTACGTAGCCAAACCCTTATTCACGTGTAAGGATC
631 TAAGAAGGACTGTCTTCGACTTTCTTTCCCTTACATAGCCAAACCCTTATTCACGCCTAAGGATC
* * *
199153796 TCTCCTACTTTTTTGTTCGTCGTTTAGTGTTTCCTTAGTTGGCTTTTTATAGCCTTTTTCCTA-G
696 TCTCCCAC-TTTTTGTTCGTCGTTTAGTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTAGG
* *
199153860 GTAAAT-CCAGAAACACATATTTATCTTCTCCTCTATTTAAATTCTTTTTTCAACAACCCAATAT
760 GTAAATCCCA-AAACCCATATTTATCTTCTCCTCTATTTAAATTC-TTTTTCAACAACCCAAGAT
* * * * * * *
199153924 TATCATCTTTTATTTTTTAGGCTGTTTTTTCTGGTAGAAGTAAATTTGGGCTGAAACTGGCATGC
823 TATCTTC-TCTATTTTTTAGGCAGATTTTTCTGGTACAAGTAAAGTTGGACTGAAACTGGCATGC
* * ** *
199153989 GCTGAGTGTTGACTCAGTCTTCTCGACATTGCCACAGTATCCATTTTGACAAAATGTCCAACTCT
887 GTTGAGTGTTAACTCAGTCTTCTCGACATTGCCACAACATCCATTTTGGCAAAATGTCCAACTCT
*
199154054 TTGCCCCAGCAAAAGCTC
952 TTGCCCCAGCAAAAGTTC
* * *
199154072 ACTCCTTTGTTTCTTTCTCCACATCCTGCACCTACCAAACCACCAAACACAGCCCTACCACAAGA
1 ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
* *
199154137 AATTAAAAGTAACAAATAATAATATTTAAGCATTATCCAAGCTTCTTATGCAATGTTCTAAAAAT
66 AATTAAAAGTAACAAATAATAATATTTAAGCACTGTCCAAGCTTCTTATGCAATGTTCTAAAAAT
* * * * *
199154202 GCTAAAACAATATCCTAAAATGCAACTAAGTTTACTTAAGTACAGACAATTGATCCAGCCTAAAG
131 GCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAAG
*
199154267 GCATGAATTATAACTCTTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTTT
196 GCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTTT
* * * *
199154332 AAGTTTCAAAATAGTTCAAAAACATAAACTCGTTCTTTTAATCATGTTTAAGTA
261 AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATCATGTTTAAGTA
199154386 GTCCATATAG
Statistics
Matches: 2050, Mismatches: 185, Indels: 75
0.89 0.08 0.03
Matches are distributed among these distances:
965 15 0.01
966 168 0.08
967 6 0.00
968 3 0.00
969 598 0.29
970 1 0.00
972 92 0.04
974 2 0.00
976 1 0.00
977 1 0.00
979 2 0.00
980 1 0.00
983 1 0.00
984 5 0.00
986 79 0.04
987 3 0.00
988 3 0.00
989 588 0.29
990 475 0.23
991 6 0.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.34
Consensus pattern (969 bp):
ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
AATTAAAAGTAACAAATAATAATATTTAAGCACTGTCCAAGCTTCTTATGCAATGTTCTAAAAAT
GCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAAG
GCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTTT
AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATCATGTTTAAGTAATCAGTTTATA
AGTATGCGAACAGTCTTCTATGTCTAGAGATCATTTGCATTTTAATTAAGAAATAAGAACAATCA
AATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGAA
AGTAATCCCAACCTTATGAGATTTGGCTCATGGGCTGAGAAATAAAATTACCAAAAATTGTGTTC
AACTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAACAAAAGAACTTTGGGAAACAG
CTTTCGCTTGCCCAGTCCACATTTCAGAAAACATCTTGTTATGGCTAAGAAGGACTGTCTTCGAC
TTTCTTTCCCTTACATAGCCAAACCCTTATTCACGCCTAAGGATCTCTCCCACTTTTTGTTCGTC
GTTTAGTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTAGGGTAAATCCCAAAACCCATATT
TATCTTCTCCTCTATTTAAATTCTTTTTCAACAACCCAAGATTATCTTCTCTATTTTTTAGGCAG
ATTTTTCTGGTACAAGTAAAGTTGGACTGAAACTGGCATGCGTTGAGTGTTAACTCAGTCTTCTC
GACATTGCCACAACATCCATTTTGGCAAAATGTCCAACTCTTTGCCCCAGCAAAAGTTC
Found at i:199154219 original size:990 final size:983
Alignment explanation
Indices: 199151124--199154385 Score: 4780
Period size: 989 Copynumber: 3.3 Consensus size: 983
199151114 GGACGTCACA
* * * * *
199151124 ACTCGTTTGATTCTTTCTCCATATCTTGCAGCTACCAAACCACCAAACATAGCCCTACCACAAGA
1 ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
* * *
199151189 AATTAAAAGTAACAAATAATAATATTTAAGCACTGTCCAAGCTTCTTATGCAATATTTTAAAACT
66 AATTAAAAGTAACAAATAATAATATTTAAGCACTGTCCAAGCTTCTTATGCAATGTTCTAAAAAT
* * * *
199151254 GCTAAAATAAAATCCTAAAATGCAACTAAGTTCACTCAAGTACAAAAAATTGACCCAGCCTAAAG
131 GCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAAG
*
199151319 GCATGAATTATAACTATTTTCAAGAGTTTTCATTCACTATGACAGAATGGTTTATTTTCATTTTT
196 GCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTTT
* * *
199151384 AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCATCTGGTCATATTTAAGTAATCAGTTTATA
261 AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATCATGTTTAAGTAATCAGTTTATA
* * *
199151449 AGTATACGAACAGTCTTCTATGTCTAAAGATCATTTGCATTTTAATTAAGAAATAAGAACAATCG
326 AGTATGCGAACAGTCTTCTATGTCTAGAGATCATTTGCATTTTAATTAAGAAATAAGAACAATCA
* *
199151514 AATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTGAAGGTTTGATTGAA
391 AATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGAA
* * *
199151579 AGTAATCCCAACCTTATGAGATTTAGATCATCGGCTG-GAAAATAAAATTCCAAACCAAAATATT
456 AGTAATCCCAACCTTATGAGATTTGGCTCATGGGCTGAG-AAATAAAATTCCAAACCAAAATATT
* * *
199151643 ATCTAAAATTGTGTTCAACTACTTTAATTCAATCTTTCGAAGGAACAGTAATGGAAATAACAAAA
520 ATCT--AGTTGTG-TCAACTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAACAAAA
* * * * * *
199151708 CAACTTTGGGAAATAGCTTTCGCTTGCCCAGTCCACACTTCGGAAACACAACATCTTGTGATGGC
582 GAACTTTGGGAAACAGCTTTCGCTTGCCCAGTCCACACTTTGGCAGCA-AACATCTTGTTATGGC
199151773 TAAGAAGGACTGTCTTCGACTTTCTTTCCCTTACATAGCCAAACCCTTATTCACGCCTAAGGATC
646 TAAGAAGGACTGTCTTCGACTTTCTTTCCCTTACATAGCCAAACCCTTATTCACGCCTAAGGATC
* * *
199151838 TCTCCCACTTTTTGTTTTTTGTCGTTTTGTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTA
711 TCTCCCAC-TTTT-TTGTTCGTCGTTTAGTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTA
* * * * *
199151903 GGGTAAATCCAAAAACCCATGTTTATCTTCTCCTATATTTAAATTCCTTTTTCAACAAACTAAGA
774 GGGTAAATCC-AAAACCCATATTTATCTTCTCCTCTATTTAAATTCTTTTTTCAACAACCCAA-A
* *
199151968 TTATCTTC-TCTATTTTTTAGG-TAGATTTTTT-TGGT-GCAAGTAAAGTTGGCCTAAAACTGGC
837 TTATCTTCTTCTATTTTTTAGGCT-G-TTTTTTCTGGTAG-AAGTAAAGTTGGACTGAAACTGGC
* * *
199152029 TTGTGTTAAGTGTTAACTCAGTCTTC-CTGACATTGCCAC-ATCCATTTTGGCAAAATGTCCAAC
899 ATGCGTTGAGTGTTAACTCAGTCTTCTC-GACATTGCCACAATCCATTTTGGCAAAATGTCCAAC
* * *
199152092 TATTCGCCCCAGCAAATGTTC
963 TCTTTGCCCCAGCAAAAGTTC
* * *
199152113 ACTCCTTTGTTTCTTTCTCCATATACAACACCTACCAAACCACCAACCATAGCCCTACCACAAGA
1 ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
* *
199152178 AATTAAAAGTAGCAAATAATAATATTTAAGCACTGTCCAAGCTTCTTACGCAATGTTCTAAAAAT
66 AATTAAAAGTAACAAATAATAATATTTAAGCACTGTCCAAGCTTCTTATGCAATGTTCTAAAAAT
* * *
199152243 GCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAATACAAACAATTGACCTAACCTAAAG
131 GCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAAG
* * * * *
199152308 GCATGAATTATAACTCTTTTCAAGAGTTTTCATTCACTACGACAGAATGGTTTATTTTAAGTTTT
196 GCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTTT
* *
199152373 AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATTATGTTTAAGTAATCAATTTATA
261 AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATCATGTTTAAGTAATCAGTTTATA
* *
199152438 AGTATGCGAACAGTCTTCTATGTCTAGAGATCATTTGCATTTTAATTAAGAAATAAGAATAATCT
326 AGTATGCGAACAGTCTTCTATGTCTAGAGATCATTTGCATTTTAATTAAGAAATAAGAACAATCA
199152503 AATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGAA
391 AATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGAA
*
199152568 AGTAATCCCAACCTTATGAGATTTGGCTCATGGGCTGAGAAATAAAATT-----CC--GA-A--A
456 AGTAATCCCAACCTTATGAGATTTGGCTCATGGGCTGAGAAATAAAATTCCAAACCAAAATATTA
* *
199152623 T-T-G-TGT-TTAACTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAACAAAAGGAC
521 TCTAGTTGTGTCAACTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAACAAAAGAAC
* *
199152684 TTTGGTAAACAGCTTTCGCTTGCCCAGTCTACA-TTT--CAG-AAACATGTCTTGTTATGGCTAA
586 TTTGGGAAACAGCTTTCGCTTGCCCAGTCCACACTTTGGCAGCAAACA--TCTTGTTATGGCTAA
* * **
199152745 GAAGGACTGTGTTCAACTTTCTTTCCCTTACATAGCCAAACTGTTATTCACGCCTAAGGATCTCT
649 GAAGGACTGTCTTCGACTTTCTTTCCCTTACATAGCCAAACCCTTATTCACGCCTAAGGATCTCT
*
199152810 CCCAC-TTTTTGTTCGTCGTTTACTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTAGGGTA
714 CCCACTTTTTTGTTCGTCGTTTAGTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTAGGGTA
* * * *
199152874 AATCCCAAAACCCATATTTATATTCTCCTCTGTTTAAATTCTTTTCTCAATAACCCAAATTATCT
779 AAT-CCAAAACCCATATTTATCTTCTCCTCTATTTAAATTCTTTTTTCAACAACCCAAATTATCT
* * * * * *
199152939 TCTACTATTTTTTAGGCGGATTTTTCTGGTACAAGTAAAGTTGGACTGAAACTAGCATACGTTGA
843 TCTTCTATTTTTTAGGCTGTTTTTTCTGGTAGAAGTAAAGTTGGACTGAAACTGGCATGCGTTGA
* *
199153004 GTGTTAACTCAGTCTTCTCGACATTGCCACAACATCCAATTTGGCAAAATGTCTAACTCTTTGCC
908 GTGTTAACTCAGTCTTCTCGACATTGCCAC-A-ATCCATTTTGGCAAAATGTCCAACTCTTTGCC
* *
199153069 CCAGCAAACGTTT
971 CCAGCAAAAGTTC
199153082 ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
1 ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
* *
199153147 AATTAAAAGTAACAAATAATAATATTTAAGCA-TCGTCCAAGCTTCTTTTGCAATGTTCTACAAA
66 AATTAAAAGTAACAAATAATAATATTTAAGCACT-GTCCAAGCTTCTTATGCAATGTTCTAAAAA
199153211 TGCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAA
130 TGCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAA
*
199153276 GGCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAACGGTTTATTTTCATTTT
195 GGCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTT
* * * * *
199153341 TGAGCTTCAAAATAGTTCAAAAACGTAAAATCATTCTTCTGATGATGTTTGAGTAATCAGTTTAT
260 TAAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATCATGTTTAAGTAATCAGTTTAT
* * * * *
199153406 AAGTATGTGAACAGTCTTTTATGTCTAGAGATCATTTCCATTTTTATTAAGTAATAAGAACAATC
325 AAGTATGCGAACAGTCTTCTATGTCTAGAGATCATTTGCATTTTAATTAAGAAATAAGAACAATC
199153471 AAATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGA
390 AAATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGA
* *
199153536 AAGTAATCCCAACCTTATGATATTTGGCTAATGGGCTGAGAAATAAAATTCCAAACCAAAATATT
455 AAGTAATCCCAACCTTATGAGATTTGGCTCATGGGCTGAGAAATAAAATTCCAAACCAAAATATT
* *
199153601 ATCTGACGTTGTGCTCATCTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAATAAAA
520 ATCT-A-GTTGTG-TCAACTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAACAAAA
* * *
199153666 GAACTTTGGGAAACAGCTATCGCTTGCGCAGTCCAGACTTTGGCAGCATAACATCTTGTTATGGC
582 GAACTTTGGGAAACAGCTTTCGCTTGCCCAGTCCACACTTTGGCAGCA-AACATCTTGTTATGGC
* ** * * * **
199153731 TAAGAAGGATTCCCTTCGACTTTCTTACTCTTACGTAGCCAAACCCTTATTCACGTGTAAGGATC
646 TAAGAAGGACTGTCTTCGACTTTCTTTCCCTTACATAGCCAAACCCTTATTCACGCCTAAGGATC
* * *
199153796 TCTCCTACTTTTTTGTTCGTCGTTTAGTGTTTCCTTAGTTGGCTTTTTATAGCCTTTTTCCTA-G
711 TCTCCCACTTTTTTGTTCGTCGTTTAGTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTAGG
*
199153860 GTAAATCCAGAAACACATATTTATCTTCTCCTCTATTTAAATTCTTTTTTCAACAACCCAATATT
776 GTAAATCCA-AAACCCATATTTATCTTCTCCTCTATTTAAATTCTTTTTTCAACAACCCAA-ATT
* * * *
199153925 ATCATCTTTTATTTTTTAGGCTGTTTTTTCTGGTAGAAGTAAATTTGGGCTGAAACTGGCATGCG
839 ATCTTCTTCTATTTTTTAGGCTGTTTTTTCTGGTAGAAGTAAAGTTGGACTGAAACTGGCATGCG
* * *
199153990 CTGAGTGTTGACTCAGTCTTCTCGACATTGCCACAGTATCCATTTTGACAAAATGTCCAACTCTT
904 TTGAGTGTTAACTCAGTCTTCTCGACATTGCCACA--ATCCATTTTGGCAAAATGTCCAACTCTT
*
199154055 TGCCCCAGCAAAAGCTC
967 TGCCCCAGCAAAAGTTC
* * *
199154072 ACTCCTTTGTTTCTTTCTCCACATCCTGCACCTACCAAACCACCAAACACAGCCCTACCACAAGA
1 ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
* *
199154137 AATTAAAAGTAACAAATAATAATATTTAAGCATTATCCAAGCTTCTTATGCAATGTTCTAAAAAT
66 AATTAAAAGTAACAAATAATAATATTTAAGCACTGTCCAAGCTTCTTATGCAATGTTCTAAAAAT
* * * * *
199154202 GCTAAAACAATATCCTAAAATGCAACTAAGTTTACTTAAGTACAGACAATTGATCCAGCCTAAAG
131 GCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAAG
*
199154267 GCATGAATTATAACTCTTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTTT
196 GCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTTT
* * * *
199154332 AAGTTTCAAAATAGTTCAAAAACATAAACTCGTTCTTTTAATCATGTTTAAGTA
261 AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATCATGTTTAAGTA
199154386 GTCCATATAG
Statistics
Matches: 2044, Mismatches: 189, Indels: 79
0.88 0.08 0.03
Matches are distributed among these distances:
965 14 0.01
966 169 0.08
967 10 0.00
968 2 0.00
969 591 0.29
971 2 0.00
972 80 0.04
974 5 0.00
976 1 0.00
977 1 0.00
978 1 0.00
979 4 0.00
980 1 0.00
981 1 0.00
982 1 0.00
983 1 0.00
984 5 0.00
986 79 0.04
987 3 0.00
988 3 0.00
989 593 0.29
990 472 0.23
991 5 0.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.34
Consensus pattern (983 bp):
ACTCCTTTGTTTCTTTCTCCATATCCTACACCTACCAAACCACCAAACATAGCCCTACCACAAGA
AATTAAAAGTAACAAATAATAATATTTAAGCACTGTCCAAGCTTCTTATGCAATGTTCTAAAAAT
GCTAAAATAATATCCTAAAATGAAACTAAGTTCACTTAAGTACAAACAATTGACCCAGCCTAAAG
GCATGAATTATAACTATTTTCAAGAGTTATCATTCACTATGACAGAATGGTTTATTTTCATTTTT
AAGCTTCAAAATAGTTCAAAAACATAAACTCATTCTTCTGATCATGTTTAAGTAATCAGTTTATA
AGTATGCGAACAGTCTTCTATGTCTAGAGATCATTTGCATTTTAATTAAGAAATAAGAACAATCA
AATGAAACAGTAAAGTAAATTAGATATATACTGCATCCATAAAAATAGTTTAAGGTTTCATTGAA
AGTAATCCCAACCTTATGAGATTTGGCTCATGGGCTGAGAAATAAAATTCCAAACCAAAATATTA
TCTAGTTGTGTCAACTACTTCAATTCAATCTTTCGAAGGAACACTAATGGAAATAACAAAAGAAC
TTTGGGAAACAGCTTTCGCTTGCCCAGTCCACACTTTGGCAGCAAACATCTTGTTATGGCTAAGA
AGGACTGTCTTCGACTTTCTTTCCCTTACATAGCCAAACCCTTATTCACGCCTAAGGATCTCTCC
CACTTTTTTGTTCGTCGTTTAGTGTTTCCTCAGTTGGCTTTTTATAGCTTTTTTCCTAGGGTAAA
TCCAAAACCCATATTTATCTTCTCCTCTATTTAAATTCTTTTTTCAACAACCCAAATTATCTTCT
TCTATTTTTTAGGCTGTTTTTTCTGGTAGAAGTAAAGTTGGACTGAAACTGGCATGCGTTGAGTG
TTAACTCAGTCTTCTCGACATTGCCACAATCCATTTTGGCAAAATGTCCAACTCTTTGCCCCAGC
AAAAGTTC
Found at i:199158902 original size:28 final size:28
Alignment explanation
Indices: 199158864--199158970 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
199158854 GAATCATTCG
* *
199158864 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
199158892 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
199158920 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
199158948 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
199158971 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:199165792 original size:49 final size:49
Alignment explanation
Indices: 199165732--199166084 Score: 571
Period size: 49 Copynumber: 7.4 Consensus size: 49
199165722 TACATATGTG
* * * *
199165732 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
199165781 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
199165830 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
199165879 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
199165928 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
199165971 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGTAAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
199166017 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
199166066 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
199166085 TAATGTAAAA
Statistics
Matches: 285, Mismatches: 10, Indels: 18
0.91 0.03 0.06
Matches are distributed among these distances:
40 32 0.11
41 2 0.01
42 1 0.00
43 2 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 1 0.00
48 2 0.01
49 239 0.84
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:199165982 original size:89 final size:89
Alignment explanation
Indices: 199165786--199166063 Score: 439
Period size: 89 Copynumber: 3.0 Consensus size: 89
199165776 GTATATGTGA
* * *
199165786 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
199165851 ATGTGGTGAATGTGAAAGTGTATGTATATGTG
66 ATGTGGTGAATGTGAAA--G--TG--TA--TG
199165883 ATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCC
1 -TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCC
199165948 GATGTGGTGAATGTGAAAGTGTATG
65 GATGTGGTGAATGTGAAAGTGTATG
*
199165973 TAAGGCCTAATGGCCGATGTGGTGAATGTAAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
199166038 ATGTGGTGAATGTGAAAGTGTATG
66 ATGTGGTGAATGTGAAAGTGTATG
199166062 TA
1 TA
199166064 TATGTGATAA
Statistics
Matches: 176, Mismatches: 4, Indels: 9
0.93 0.02 0.05
Matches are distributed among these distances:
89 90 0.51
90 2 0.01
92 2 0.01
94 2 0.01
96 1 0.01
98 79 0.45
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (89 bp):
TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCG
ATGTGGTGAATGTGAAAGTGTATG
Found at i:199166010 original size:138 final size:143
Alignment explanation
Indices: 199165732--199166084 Score: 581
Period size: 138 Copynumber: 2.5 Consensus size: 143
199165722 TACATATGTG
* * * *
199165732 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
199165797 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAA--GGATG-ATATGTGA-GAGGCCTAATGGCCGATGTGGTGAAT
*
199165862 GTGAAAGTGTATGTATA
127 GTAAAAGTGTATGTATA
199165879 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
199165944 GGCCGATGTGGTGAATGTGAAA-G-TG-TATGT-A-AGGCCTAATGGCCGATGTGGTGAATGTAA
66 GGCCGATGTGATGAATGTGAAAGGATGATATGTGAGAGGCCTAATGGCCGATGTGGTGAATGTAA
199166004 AAGTGTATGTATA
131 AAGTGTATGTATA
199166017 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
199166082 GGC
66 GGC
199166085 TAATGTAAAA
Statistics
Matches: 200, Mismatches: 6, Indels: 9
0.93 0.03 0.04
Matches are distributed among these distances:
138 109 0.55
140 1 0.00
141 5 0.03
143 2 0.01
144 1 0.00
147 82 0.41
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (143 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGGATGATATGTGAGAGGCCTAATGGCCGATGTGGTGAATGTAA
AAGTGTATGTATA
Found at i:199166090 original size:89 final size:90
Alignment explanation
Indices: 199165808--199166094 Score: 377
Period size: 89 Copynumber: 3.1 Consensus size: 90
199165798 GCCGATGTGA
* * *
199165808 TGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TGAATGTAAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
199165873 TGTATATGTGATAAGGCCTAATGGCC
66 TGTATATGTGATAAGGCCTAATGG-C
*
199165899 GATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGA
1 -------TGAATGTAAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGA
* * *
199165964 AAGTGTATGTA-A-G-GCCTAATGGCC-GATGTGG
59 AAGTGTATGTATATGTG-ATAA-GGCCTAATG-GC
199165995 TGAATGTAAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TGAATGTAAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
199166060 TGTATATGTGATAAGGCCTAATGGC
66 TGTATATGTGATAAGGCCTAATGGC
199166085 T-AATGTAAAA
1 TGAATGTAAAA
199166095 TATATGTGTG
Statistics
Matches: 173, Mismatches: 9, Indels: 23
0.84 0.04 0.11
Matches are distributed among these distances:
89 77 0.45
90 7 0.04
91 7 0.04
92 1 0.01
95 1 0.01
96 7 0.04
97 6 0.03
98 67 0.39
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (90 bp):
TGAATGTAAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
TGTATATGTGATAAGGCCTAATGGC
Found at i:199166236 original size:37 final size:37
Alignment explanation
Indices: 199166186--199166270 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
199166176 GGAATATGTT
*
199166186 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
199166223 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
199166260 CCGGGTAAGAC
1 CCGGGTAAGAC
199166271 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:199168143 original size:40 final size:40
Alignment explanation
Indices: 199168086--199168330 Score: 346
Period size: 40 Copynumber: 6.1 Consensus size: 40
199168076 GAGAATTGAG
* *
199168086 AGTGATATATCCAGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
199168126 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
199168166 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
199168206 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
199168246 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
199168286 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
199168326 AGTGA
1 AGTGA
199168331 CGTGTATTCG
Statistics
Matches: 195, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 195 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
Found at i:199168536 original size:29 final size:29
Alignment explanation
Indices: 199168503--199168695 Score: 341
Period size: 29 Copynumber: 6.7 Consensus size: 29
199168493 CGAATGAATA
199168503 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
199168532 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
199168561 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
199168590 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
199168619 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
* *
199168648 GAGGCACTACGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
199168677 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
199168696 TTTTCAACAG
Statistics
Matches: 158, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 158 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:199172524 original size:40 final size:39
Alignment explanation
Indices: 199172361--199172542 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
199172351 AAATTGAATG
* *
199172361 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
199172400 ATAACCGGGTTAAGACCCGAAGGCAATT-TGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
199172439 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
199172479 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
199172518 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
199172543 CTTGGTGGTT
Statistics
Matches: 111, Mismatches: 25, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
35 2 0.02
36 2 0.02
37 1 0.01
38 2 0.02
39 45 0.41
40 59 0.53
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:199180569 original size:40 final size:39
Alignment explanation
Indices: 199180404--199180587 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
199180394 AAATTGAATG
* * *
199180404 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
199180444 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
199180484 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
199180524 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
199180563 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
199180588 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:199180612 original size:80 final size:81
Alignment explanation
Indices: 199180444--199180632 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
199180434 GCTGGAAATT
* * * *
199180444 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
199180509 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
199180525 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
199180588 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
199180604 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
199180633 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:199183503 original size:24 final size:24
Alignment explanation
Indices: 199183452--199183711 Score: 395
Period size: 24 Copynumber: 11.0 Consensus size: 24
199183442 GCTTTATCAT
*
199183452 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
199183477 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
199183501 ATAACTGGGGCATAAG-ACTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
199183524 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
199183548 ATAATTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
199183571 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
199183595 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
199183618 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
199183642 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
199183666 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
199183689 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
199183712 GCACTTCCTC
Statistics
Matches: 217, Mismatches: 13, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
23 87 0.40
24 118 0.54
25 12 0.06
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:199183712 original size:47 final size:48
Alignment explanation
Indices: 199183452--199183711 Score: 395
Period size: 47 Copynumber: 5.5 Consensus size: 48
199183442 GCTTTATCAT
* *
199183452 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
199183501 ATAACTGGGGCATAAG-ACTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
199183548 ATAATTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
199183595 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
199183642 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
199183689 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
199183712 GCACTTCCTC
Statistics
Matches: 199, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
47 162 0.81
48 27 0.14
49 10 0.05
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:199183712 original size:71 final size:71
Alignment explanation
Indices: 199183473--199183711 Score: 401
Period size: 71 Copynumber: 3.4 Consensus size: 71
199183463 CCTAGCCTCT
* * * *
199183473 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG-ACTTTTAATAACTGGGGCAA
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAT
199183537 AAGCCC
66 AAGCCC
*
199183543 TTTTAATAATTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA
199183607 TAAGCCC
65 TAAGCCC
*
199183614 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAT
199183679 AAGCCC
66 AAGCCC
199183685 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
199183712 GCACTTCCTC
Statistics
Matches: 159, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
70 42 0.26
71 117 0.74
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (71 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAT
AAGCCC
Found at i:199183783 original size:9 final size:9
Alignment explanation
Indices: 199183769--199183825 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
199183759 ATCTCATGTG
199183769 CATATCATA
1 CATATCATA
*
199183778 CATATCATGTG
1 CATATCA--TA
199183789 CATATCATA
1 CATATCATA
* *
199183798 CATGTCATGTG
1 CATATCA--TA
199183809 CATATCATA
1 CATATCATA
199183818 CATATCAT
1 CATATCAT
199183826 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:199183785 original size:20 final size:20
Alignment explanation
Indices: 199183757--199183827 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
199183747 GCATTTATGA
*
199183757 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
199183777 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
199183797 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
199183817 ACATATCATGT
1 ACATATCATGT
199183828 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:199183792 original size:11 final size:11
Alignment explanation
Indices: 199183762--199183816 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
199183752 TATGAACATC
199183762 TCATGTGCATA
1 TCATGTGCATA
*
199183773 TCA--TACATA
1 TCATGTGCATA
199183782 TCATGTGCATA
1 TCATGTGCATA
* *
199183793 TCA--TACATG
1 TCATGTGCATA
199183802 TCATGTGCATA
1 TCATGTGCATA
199183813 TCAT
1 TCAT
199183817 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:199183892 original size:25 final size:25
Alignment explanation
Indices: 199183864--199183911 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
199183854 ATATATAAAC
* *
199183864 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
199183889 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
199183912 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:199185914 original size:39 final size:39
Alignment explanation
Indices: 199185869--199185989 Score: 190
Period size: 39 Copynumber: 3.1 Consensus size: 39
199185859 ATTCAAGACA
199185869 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
199185908 CTGGAAATGTAT-TCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCT-GGGCTAAAGTCCCGCAGGCTTCGTG
* * * *
199185947 TTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
199185986 CTGG
1 CTGG
199185990 TAATATAATT
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 73 0.99
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:199188264 original size:28 final size:28
Alignment explanation
Indices: 199188232--199188332 Score: 132
Period size: 28 Copynumber: 3.6 Consensus size: 28
199188222 GTGAACATAG
199188232 GCACTGTGTGTGCGAGTTTC-GTAACTGA
1 GCACTGTGTGTGCGAG-TTCGGTAACTGA
* ***
199188260 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCGGTAACTGA
*
199188288 GGCACTGTGTGTGCGAGTTCTGTAACTGA
1 -GCACTGTGTGTGCGAGTTCGGTAACTGA
199188317 GCACTGTGTGTGCGAG
1 GCACTGTGTGTGCGAG
199188333 ATCAGTTTGT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
27 2 0.03
28 37 0.60
29 23 0.37
ACGTcount: A:0.16, C:0.17, G:0.37, T:0.31
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCGGTAACTGA
Found at i:199188299 original size:57 final size:58
Alignment explanation
Indices: 199188230--199188360 Score: 203
Period size: 57 Copynumber: 2.2 Consensus size: 58
199188220 AAGTGAACAT
199188230 AGGCACTGTGTGTGCGAGTT-TCGTAACTGAGCACTGTGTGTGCGAGATC-GGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCT-GTAACTGAGCACTGTGTGTGCGAGATCAGGTTGTTG
*
199188287 AGGCACTGTGTGTGCGAGTTCTGTAACTGAGCACTGTGTGTGCGAGATCAGTTTGTTG
1 AGGCACTGTGTGTGCGAGTTCTGTAACTGAGCACTGTGTGTGCGAGATCAGGTTGTTG
*
199188345 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
199188361 AAATGAGATC
Statistics
Matches: 68, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
57 47 0.69
58 14 0.21
60 7 0.10
ACGTcount: A:0.17, C:0.15, G:0.37, T:0.31
Consensus pattern (58 bp):
AGGCACTGTGTGTGCGAGTTCTGTAACTGAGCACTGTGTGTGCGAGATCAGGTTGTTG
Found at i:199195586 original size:46 final size:47
Alignment explanation
Indices: 199195411--199195580 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 47
199195401 TGTAACCCGC
* * *
199195411 CCATAAGCGAACTCAGACTCAACTCAACGAACTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGACATTCGCAT
* * * *
199195457 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAG--GAC-A-TTCGCAT
* * *
199195507 --TTCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGACATTCGCAT
*
199195550 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
199195581 TTCGGATGCT
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 56 0.57
47 24 0.24
48 3 0.03
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGACATTCGCAT
Found at i:199195605 original size:46 final size:45
Alignment explanation
Indices: 199195512--199195597 Score: 129
Period size: 46 Copynumber: 1.9 Consensus size: 45
199195502 TACATTTCAC
* *
199195512 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
199195558 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
199195598 CCTAGTGACA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 9 0.24
46 28 0.76
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:199201186 original size:15 final size:15
Alignment explanation
Indices: 199201166--199201195 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
199201156 CAACACTTGT
199201166 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
199201181 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
199201196 AATACATTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:199205163 original size:68 final size:70
Alignment explanation
Indices: 199205091--199205288 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
199205081 ACACCCTGTA
* * * *
199205091 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
199205153 ATAAAT
65 ATAAAT
*
199205159 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
199205224 ATAAAT
65 ATAAAT
*
199205230 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
199205289 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:199205202 original size:41 final size:41
Alignment explanation
Indices: 199205157--199205274 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
199205147 TGAAAGATAA
199205157 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
199205198 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
199205228 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
199205269 ATGTAG
1 ATGTAG
199205275 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:199205214 original size:71 final size:71
Alignment explanation
Indices: 199205125--199205288 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
199205115 GAGATGTATC
199205125 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
199205190 AGGACA
66 AGGACA
199205196 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
199205261 AGGACA
66 AGGACA
199205267 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
199205289 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:199209300 original size:16 final size:16
Alignment explanation
Indices: 199209279--199209311 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
199209269 TTGATTGGAA
199209279 CCGCCCAAGAATGTAT
1 CCGCCCAAGAATGTAT
199209295 CCGCCCAAGAATGTAT
1 CCGCCCAAGAATGTAT
199209311 C
1 C
199209312 TGAGGTTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.33, G:0.18, T:0.18
Consensus pattern (16 bp):
CCGCCCAAGAATGTAT
Found at i:199212270 original size:68 final size:70
Alignment explanation
Indices: 199212198--199212395 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
199212188 ACACCCTGTA
* * * *
199212198 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
199212260 ATAAAT
65 ATAAAT
*
199212266 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
199212331 ATAAAT
65 ATAAAT
*
199212337 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
199212396 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:199212309 original size:41 final size:41
Alignment explanation
Indices: 199212264--199212381 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
199212254 TGAAAGATAA
199212264 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
199212305 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
199212335 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
199212376 ATGTAG
1 ATGTAG
199212382 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Done.