Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 640 of 770
Found at i:201055123 original size:28 final size:29
Alignment explanation
Indices: 201055069--201055137 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
201055059 ATCAAAACTG
* *
201055069 TAAACCTTAAACCATTAAACTATAT-CCA
1 TAAACCTTAAACCACTAAAATATATCCCA
201055097 TATAACCTTAAACC-CTAAAATATATCCCA
1 TA-AACCTTAAACCACTAAAATATATCCCA
*
201055126 TAAACCCTAAAC
1 TAAACCTTAAAC
201055138 TATATCCCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 20 0.56
29 16 0.44
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.26
Consensus pattern (29 bp):
TAAACCTTAAACCACTAAAATATATCCCA
Found at i:201055152 original size:21 final size:21
Alignment explanation
Indices: 201055105--201055159 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
201055095 CATATAACCT
*
201055105 TAAACCCTAAAATATATCCCA
1 TAAACCCTAAACTATATCCCA
201055126 TAAACCCTAAACTATATCCC-
1 TAAACCCTAAACTATATCCCA
*
201055146 TATAACCTTAAACT
1 TA-AACCCTAAACT
201055160 TTAAAGTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 2 0.06
21 29 0.94
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (21 bp):
TAAACCCTAAACTATATCCCA
Found at i:201055211 original size:20 final size:21
Alignment explanation
Indices: 201055172--201055212 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
201055162 AAAGTATATA
*
201055172 TATATCCCCTAAACCCTAAAC
1 TATATCCCCTAAACCATAAAC
201055193 TATATCCCCT-AACCATAAAC
1 TATATCCCCTAAACCATAAAC
201055213 CATAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (21 bp):
TATATCCCCTAAACCATAAAC
Found at i:201055333 original size:258 final size:252
Alignment explanation
Indices: 201054881--201055353 Score: 811
Period size: 258 Copynumber: 1.9 Consensus size: 252
201054871 CTTAAACCAT
*
201054881 TAAACTATATCCCTATAACCTTAAACCCTAAAGTATATCCTCTAAACCCTAAACTATATCCCCTA
1 TAAACTATATCCCTATAACCTTAAACCCTAAAGTATATCCCCTAAACCCTAAACTATATCCCCTA
*
201054946 ACCATAAACCACAAAACAATAACCCCTAATCCTTAACCACAAAATGTATGAATTAATCATAACCC
66 ACCATAAACCACAAAACAATAACCCCTAAGCCTTAACCACAAAATGTATGAATTAATCATAACCC
*
201055011 TAAACTATATCCCTTGATCCTTAAACCACAAAATAATAACACTAATTAATCAAAACTGTAAACCT
131 TAAACTATATCCCTTGATCCTTAAACCACAAAATAATAACACTAATTAATCAAAACTCTAAACCT
201055076 TAAACCATTAAACTATATCCATATAACCTTAAACCCTAAAATATATCCCATAAACCC
196 TAAACCATTAAACTATATCCATATAACCTTAAACCCTAAAATATATCCCATAAACCC
**
201055133 TAAACTATATCCCTATAACCTTAAACTTTAAAGTATATATATATCCCCTAAACCCTAAACTATAT
1 TAAACTATATCCCTATAACCTTAAACCCTAAAG------TATATCCCCTAAACCCTAAACTATAT
* * *
201055198 CCCCTAACCATAAACCATAAAATAATAACCCTTAAGCCTTAACCACAAAATGTATGAATTAATCA
60 CCCCTAACCATAAACCACAAAACAATAACCCCTAAGCCTTAACCACAAAATGTATGAATTAATCA
*
201055263 TAACCCTAAACTATATCCCTTGATCCTTAAACCACAAAATAATAACACTAATTAATCAATACTCT
125 TAACCCTAAACTATATCCCTTGATCCTTAAACCACAAAATAATAACACTAATTAATCAAAACTCT
201055328 AAACCTTAAACCATTAAACTATATCC
190 AAACCTTAAACCATTAAACTATATCC
201055354 CCTACTAAAG
Statistics
Matches: 206, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
252 31 0.15
258 175 0.85
ACGTcount: A:0.44, C:0.27, G:0.02, T:0.27
Consensus pattern (252 bp):
TAAACTATATCCCTATAACCTTAAACCCTAAAGTATATCCCCTAAACCCTAAACTATATCCCCTA
ACCATAAACCACAAAACAATAACCCCTAAGCCTTAACCACAAAATGTATGAATTAATCATAACCC
TAAACTATATCCCTTGATCCTTAAACCACAAAATAATAACACTAATTAATCAAAACTCTAAACCT
TAAACCATTAAACTATATCCATATAACCTTAAACCCTAAAATATATCCCATAAACCC
Found at i:201055385 original size:14 final size:14
Alignment explanation
Indices: 201055342--201055387 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
201055332 CTTAAACCAT
201055342 TAAACTATATCCCC
1 TAAACTATATCCCC
* *
201055356 T--ACTAAAGTACCC
1 TAAACTATA-TCCCC
201055369 TAAACTATATCCCC
1 TAAACTATATCCCC
201055383 TAAAC
1 TAAAC
201055388 CTTAAACCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
12 5 0.20
13 5 0.20
14 10 0.40
15 5 0.20
ACGTcount: A:0.39, C:0.33, G:0.02, T:0.26
Consensus pattern (14 bp):
TAAACTATATCCCC
Found at i:201055610 original size:43 final size:43
Alignment explanation
Indices: 201055545--201055688 Score: 191
Period size: 43 Copynumber: 3.3 Consensus size: 43
201055535 TTATTTAAAA
201055545 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
* * *
201055588 AAATGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTTTTTAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGC-TTTTTTCAC
* * * * * *
201055632 AAACGCCACTACAGAACA-AACCTTTAGCGACGCTTTTCTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
201055674 AAACGCCGCTAAAGA
1 AAACGCCGCTAAAGA
201055689 ATATAACCTT
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 20 0.23
43 44 0.51
44 22 0.26
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAC
Found at i:201055721 original size:20 final size:20
Alignment explanation
Indices: 201055698--201055735 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
201055688 AATATAACCT
201055698 TTAAAAAATATATATTTTTA
1 TTAAAAAATATATATTTTTA
* *
201055718 TTAAATAATATTTATTTT
1 TTAAAAAATATATATTTT
201055736 CTATATTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTAAAAAATATATATTTTTA
Found at i:201060303 original size:36 final size:36
Alignment explanation
Indices: 201060250--201060320 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
201060240 GGCAGACACC
* *
201060250 TCTTCAACCATCTGAGGACTATTAG-GAACCGAATGG
1 TCTTCAACAATCTGAGGACTATGAGAG-ACCGAATGG
201060286 TCTTCAACAAT-TGGAGGACTATGAGAGACCGAATG
1 TCTTCAACAATCT-GAGGACTATGAGAGACCGAATG
201060321 TGAGCCATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 1 0.03
36 29 0.94
37 1 0.03
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (36 bp):
TCTTCAACAATCTGAGGACTATGAGAGACCGAATGG
Found at i:201062180 original size:14 final size:14
Alignment explanation
Indices: 201062150--201062182 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
201062140 TTAAGAATAT
201062150 ATATATATATATAA
1 ATATATATATATAA
201062164 ATATA-ATATATACA
1 ATATATATATATA-A
201062178 ATATA
1 ATATA
201062183 CACATATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (14 bp):
ATATATATATATAA
Found at i:201064085 original size:143 final size:145
Alignment explanation
Indices: 201063828--201064177 Score: 446
Period size: 143 Copynumber: 2.4 Consensus size: 145
201063818 TTGAAAACAG
* * ** * *
201063828 AAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--AT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
*
201063889 TTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATGA
66 TTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
***
201063954 GTTG-ATT-TTTCAA
131 GTTGAATTAACACAA
* * * * *
201063967 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTTGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
* *
201064032 TTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
66 TTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
201064097 GTTGAAATTAAAACACAA
131 GTTG-AATT--AACACAA
* *
201064115 AAATTGAAAATACCTCAGC--GTGACCTGAGGTTCGACTCACCTCTAGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
201064178 GAAAAACAAA
Statistics
Matches: 179, Mismatches: 23, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
139 21 0.12
141 29 0.16
143 67 0.37
145 3 0.02
146 38 0.21
148 21 0.12
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (145 bp):
AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
TTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGAATTAACACAA
Found at i:201064187 original size:72 final size:71
Alignment explanation
Indices: 201063816--201064190 Score: 425
Period size: 72 Copynumber: 5.2 Consensus size: 71
201063806 TTCTTTTTTT
* * * **
201063816 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTTGAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
201063881 AGTTGAA
66 AGTTG-A
* * * *
201063888 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTTACCTCTCGCAATATG
1 TTTTGAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
201063953 AGTTGA
66 AGTTGA
* * * * *
201063959 TTTT----TCAAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTTGCAATA
1 TTTTGAAAACAAAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATA
*
201064020 CGAGTTGA
64 TGAGTTGA
* * *
201064028 TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
1 ---TTTTGAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
201064093 ATGAGTTGA
63 ATGAGTTGA
** * * * * *
201064102 AATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCTGAGGTTCGACTCACCTCTAGCAATAT
1 TTTTGAAA-ACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
201064167 GAGTTGA
65 GAGTTGA
201064174 TTTTGAAAAACAAAAAT
1 TTTTG-AAAACAAAAAT
201064191 AAAAAGGCTT
Statistics
Matches: 254, Mismatches: 38, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
67 23 0.09
69 30 0.12
71 9 0.04
72 134 0.53
73 3 0.01
74 32 0.13
76 23 0.09
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (71 bp):
TTTTGAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGA
Found at i:201072655 original size:12 final size:12
Alignment explanation
Indices: 201072635--201072670 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
201072625 TGGGATATGC
*
201072635 AATGTATGAATG
1 AATGCATGAATG
201072647 AATGCATGAATG
1 AATGCATGAATG
201072659 AATGCATGAATG
1 AATGCATGAATG
201072671 TCAAAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:201076896 original size:11 final size:11
Alignment explanation
Indices: 201076880--201076909 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
201076870 TAACATTAAG
201076880 AATATATATAT
1 AATATATATAT
*
201076891 AATATAAATAT
1 AATATATATAT
201076902 AATATATA
1 AATATATA
201076910 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:201077113 original size:24 final size:25
Alignment explanation
Indices: 201077072--201077127 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
201077062 TATATATAGC
201077072 TAAATATAATAATAATAACAATATA
1 TAAATATAATAATAATAACAATATA
* *
201077097 TAAA-ATAATAGTGATAACAATAT-
1 TAAATATAATAATAATAACAATATA
*
201077120 TACATATA
1 TAAATATA
201077128 TAACATGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 3 0.11
24 20 0.74
25 4 0.15
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (25 bp):
TAAATATAATAATAATAACAATATA
Found at i:201079345 original size:42 final size:42
Alignment explanation
Indices: 201079298--201079404 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
201079288 TATTGGTCTC
201079298 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
201079340 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
201079382 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
201079405 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:201079469 original size:27 final size:28
Alignment explanation
Indices: 201079412--201079481 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
201079402 AAAATTGTAC
**
201079412 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
201079440 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
201079467 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
201079482 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:201084770 original size:40 final size:40
Alignment explanation
Indices: 201084715--201084936 Score: 360
Period size: 40 Copynumber: 5.6 Consensus size: 40
201084705 GATGATAATG
201084715 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
201084755 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
201084795 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* * *
201084835 GTGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCC
* *
201084875 GGGCTAAGTCCCGAAGGCATTTGTGCAACT-ACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCC
201084914 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
201084937 AGCGAGTAGC
Statistics
Matches: 175, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 34 0.19
40 141 0.81
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
Found at i:201084848 original size:80 final size:80
Alignment explanation
Indices: 201084715--201084968 Score: 367
Period size: 80 Copynumber: 3.2 Consensus size: 80
201084705 GATGATAATG
201084715 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
*
201084780 CTAGTGACTA-ATTCC
66 CGAGTGACTATA-TCC
*
201084795 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGTGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
*
201084860 CGAGTTACTATATCC
66 CGAGTGACTATATCC
* * *
201084875 GGGCTAAGTCCCGAAGGCATTTGTGCAACT-ACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGA
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
201084938 GCGAGT-AGCTATAT-C
65 GCGAGTGA-CTATATCC
* *
201084953 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
201084969 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
77 14 0.09
78 4 0.02
79 40 0.25
80 103 0.64
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTGACTATATCC
Found at i:201092834 original size:40 final size:40
Alignment explanation
Indices: 201092740--201092969 Score: 351
Period size: 40 Copynumber: 5.8 Consensus size: 40
201092730 CGGATGATAA
*
201092740 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT-
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
*
201092779 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
*
201092819 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
*
201092859 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TC
*
201092899 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTAAT-TC
*
201092939 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
201092970 AGCTATATCC
Statistics
Matches: 183, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
39 43 0.23
40 138 0.75
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
Found at i:201092976 original size:40 final size:38
Alignment explanation
Indices: 201092740--201092995 Score: 343
Period size: 40 Copynumber: 6.5 Consensus size: 38
201092730 CGGATGATAA
* *
201092740 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAATC
*
201092779 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAA-TC
201092819 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAA-TC
201092859 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTA-ATC
*
201092899 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTA-ATC
*
201092939 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTA-ATC
* *
201092979 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
201092996 TACTTGGTTT
Statistics
Matches: 205, Mismatches: 7, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
39 54 0.26
40 148 0.72
41 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (38 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATC
Found at i:201099646 original size:27 final size:28
Alignment explanation
Indices: 201099592--201099659 Score: 129
Period size: 27 Copynumber: 2.5 Consensus size: 28
201099582 ATTGGTACAT
201099592 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGAGTTTGATTATATAG
201099620 CACTAAGTGTGCGAG-TTGATTATATAG
1 CACTAAGTGTGCGAGTTTGATTATATAG
201099647 CACTAAGTGTGCG
1 CACTAAGTGTGCG
201099660 GAATCACTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.62
28 15 0.38
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATTATATAG
Found at i:201106323 original size:40 final size:39
Alignment explanation
Indices: 201106155--201106325 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
201106145 AGAAATTGAA
* *
201106155 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
201106195 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
201106235 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
201106275 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
201106315 TGATATCCGGG
1 TGATATCCGGG
201106326 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:201114242 original size:58 final size:59
Alignment explanation
Indices: 201114151--201114271 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
201114141 CCCTCCCCAA
* * *
201114151 TCCCAAAAGGTAGAATTTAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
* *
201114210 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
201114268 TCCC
1 TCCC
201114272 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
Found at i:201115135 original size:43 final size:43
Alignment explanation
Indices: 201115025--201115757 Score: 753
Period size: 42 Copynumber: 17.2 Consensus size: 43
201115015 ATATGCAGGA
* *
201115025 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAGG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
201115068 AGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* *
201115110 AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
*
201115153 AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
** *
201115196 AGCCTC-AACACCATCGG-AACCTAGGCCCCTGGTCGTGCGGG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * *
201115237 AG-CTCGGACACCATCGGCAACCCAGGCCCCTGGTCGTGCGGG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
*
201115279 AGCCTCGGG-ACCATC-GCAACCTAGGCCCCT-GTCGTGC-GG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* *
201115318 ACCTGGTCGTGCGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
1 A----G-CCT-C---G----GG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
*
201115375 AGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* **
201115417 AGCCTC-GGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGG
*
201115458 AGCCT-GGGACACCATCGGTAACCTAGGCCC-TGGTCGT---GG
1 AGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* **
201115497 AGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGG
*
201115539 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
*
201115581 AGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * *
201115624 AGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGC-GG
1 AGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGG
* * * * **
201115666 AGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGG
* * * *
201115708 AGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-GTGCGGG
1 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGG
*
201115751 TGCCTCG
1 AGCCTCG
201115758 AGCAGCAAGG
Statistics
Matches: 598, Mismatches: 52, Indels: 80
0.82 0.07 0.11
Matches are distributed among these distances:
38 7 0.01
39 24 0.04
40 14 0.02
41 97 0.16
42 231 0.39
43 180 0.30
44 5 0.01
45 1 0.00
48 2 0.00
51 1 0.00
52 4 0.01
53 1 0.00
54 6 0.01
55 15 0.03
56 7 0.01
57 3 0.01
ACGTcount: A:0.15, C:0.34, G:0.34, T:0.17
Consensus pattern (43 bp):
AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
Found at i:201115268 original size:83 final size:85
Alignment explanation
Indices: 201115025--201115734 Score: 776
Period size: 85 Copynumber: 8.3 Consensus size: 85
201115015 ATATGCAGGA
*
201115025 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTC-GGCACCATCGGCAAC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAAC
201115089 CTAGGCCCTTGGTCGTGCGGG
65 CTAGGCCCTTGGTCGTGCGGG
*
201115110 AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAAC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCG-GAGCCTCGGGCACCATCGGCAAC
*
201115175 CTAGGCCCCTGGTCGTGCGGG
65 CTAGGCCCTTGGTCGTGCGGG
* *
201115196 AGCCTC-AACACCATCGG-AACCTAGGCCCCTGGTCGTGCGGGAG-CTCGGACACCATCGGCAAC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAAC
* *
201115258 CCAGGCCCCTGGTCGTGCGGG
65 CTAGGCCCTTGGTCGTGCGGG
* *
201115279 AGCCTCGG-GACCATC-GCAACCTAGGCCCCT-GTCGTGCGGACCTGGTCGTGCGGAGCCTCGGG
1 AGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGA----G-CCT-CGG-G---C---
*
201115341 CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
53 -ACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* *
201115375 AGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGC-AC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCG-GAGCCTCGGGCACCATCGGCAAC
* **
201115437 CTTGGTGCTTGGAT-GTGCGGG
65 CTAGGCCCTTGG-TCGTGCGGG
* *
201115458 AGCCTGGGACACCATCGGTAACCTAGG-CCCTGGTCGT--GGAGCCTCGGGCACCATCGGC-ACC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGAGCCTCGGGCACCATCGGCAACC
* **
201115519 TTGGTGCTTGGAT-GTGCGGG
66 TAGGCCCTTGG-TCGTGCGGG
* *
201115539 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCACCATCGGTAACC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGAGCCTCGGGCACCATCGGCAACC
201115604 TAGGCCCTTGGTCGTGCGGG
66 TAGGCCCTTGGTCGTGCGGG
* * ** * * *
201115624 AGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGAGCCTCGAGCAGCATTGGC-A
1 AGCCTCGGACACCATCGGCAACCTAGGCCCCT-GG-TCGTGCGGAGCCTCGGGCACCATCGGCAA
* **
201115686 CCTTGGTGCTTGGAT-GTGCGGG
64 CCTAGGCCCTTGG-TCGTGCGGG
*
201115708 AGCCTCGGACACCATAGGCAACCTAGG
1 AGCCTCGGACACCATCGGCAACCTAGG
201115735 ACGTTGGATG
Statistics
Matches: 544, Mismatches: 45, Indels: 72
0.82 0.07 0.11
Matches are distributed among these distances:
80 7 0.01
81 64 0.12
82 17 0.03
83 105 0.19
84 106 0.19
85 122 0.22
86 42 0.08
87 1 0.00
88 4 0.01
91 1 0.00
92 2 0.00
93 1 0.00
94 2 0.00
95 1 0.00
96 40 0.07
97 17 0.03
98 10 0.02
99 2 0.00
ACGTcount: A:0.15, C:0.34, G:0.34, T:0.17
Consensus pattern (85 bp):
AGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGAGCCTCGGGCACCATCGGCAACC
TAGGCCCTTGGTCGTGCGGG
Found at i:201115329 original size:54 final size:56
Alignment explanation
Indices: 201115265--201115373 Score: 188
Period size: 54 Copynumber: 2.0 Consensus size: 56
201115255 AACCCAGGCC
201115265 CCTGGTCGTGCGGGAGCCTCGGG-ACCATC-GCAACCTAGGCCCCT-GTCGTGCGGA
1 CCTGGTCGTGC-GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGA
201115319 CCTGGTCGTGCGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
1 CCTGGTCGTGCGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
201115374 GAGCCTCGGG
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
53 11 0.21
54 17 0.33
55 15 0.29
56 9 0.17
ACGTcount: A:0.12, C:0.36, G:0.36, T:0.17
Consensus pattern (56 bp):
CCTGGTCGTGCGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGA
Found at i:201115707 original size:169 final size:169
Alignment explanation
Indices: 201114974--201115734 Score: 874
Period size: 169 Copynumber: 4.4 Consensus size: 169
201114964 GACGTCAGTG
* * * *
201114974 GTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATATGCAGGAAGCCTCGGACACCA
1 GTGCG-GAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGC-GGGAGCCTCGGACACCA
201115039 TCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCG
63 TCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCG
*
201115104 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
128 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTGGTC
* ** * *
201115146 GTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTC-AACACCA
1 GTGCG-GAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
* * * *
201115209 TCGG-AACCTAGGCCCCTGGTCGTGCGGGAG-CTCGGACACCATCGGCAACCCAGGCCCCTGGTC
63 TCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
201115272 GTGCGGGAGCCTCGGG-ACCATC-GCAACCTAGGCCCCTGTCGTGCGGACCTGGTC
127 GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-------G--GT-C---CCTGGTC
* ** * *
201115326 GTGCGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCAT
* **
201115390 CGGC-ACCTAGGCCCTTGGTCGTGC-GAGAGCCTCGGCACCATCGGC-ACCTTGGTGCTTGGAT-
64 CGGCAACCTAGGCCCTTGGTCGTGCAG-GAGCCTCGGCACCATCGGCAACCTAGGCCCTTGG-TC
*
201115451 GTGCGGGAGCCT-GGGACACCATCGGTAACCTAGG-CCCTGGTC
127 GTGCGGGAGCCTCGGG-CACCATCGGCAACCTAGGTCCCTGGTC
201115493 GT--GGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCG
1 GTGCGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCG
*
201115556 GCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTG
66 GCAACCTAGGCCCTTGGTCGTGCAGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
201115620 CGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-
130 CGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCT-GG-TC
* * * *
201115660 GTGCGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATAG
1 GTGCGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCG
201115725 GCAACCTAGG
66 GCAACCTAGG
201115735 ACGTTGGATG
Statistics
Matches: 515, Mismatches: 39, Indels: 73
0.82 0.06 0.12
Matches are distributed among these distances:
164 42 0.08
165 61 0.12
166 35 0.07
167 24 0.05
168 12 0.02
169 132 0.26
170 11 0.02
171 9 0.02
172 32 0.06
173 6 0.01
174 2 0.00
176 1 0.00
177 1 0.00
178 3 0.01
179 72 0.14
180 60 0.12
181 12 0.02
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (169 bp):
GTGCGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCG
GCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
GGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTGGTC
Found at i:201115787 original size:43 final size:42
Alignment explanation
Indices: 201115617--201115793 Score: 155
Period size: 42 Copynumber: 4.2 Consensus size: 42
201115607 GCCCTTGGTC
* * *
201115617 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCACCA-AGGCACCCTGGTGCCTCGGAT
* * * *
201115660 GTGC-GGAGCCTCGAGCAGCATTGGCACCTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGAGCACCA-AGGCACCCTGGTGCCTCGGAT
* * * *
201115701 GTGCGGGAGCCTCG-GACACCATAGGCAACCTAGG-ACGTTGGAT
1 GTGCGGGAGCCTCGAG-CACCA-AGGCACCCT-GGTGCCTCGGAT
* *
201115744 GTGCGGGTGCCTCGAGCAGCAAGGGCACCCTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCACCAA-GGCACCCTGGTGCCTCGGAT
201115787 GTGCGGG
1 GTGCGGG
201115794 CTAAAGGAAA
Statistics
Matches: 111, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
41 11 0.10
42 50 0.45
43 49 0.44
44 1 0.01
ACGTcount: A:0.15, C:0.28, G:0.38, T:0.19
Consensus pattern (42 bp):
GTGCGGGAGCCTCGAGCACCAAGGCACCCTGGTGCCTCGGAT
Found at i:201121606 original size:58 final size:59
Alignment explanation
Indices: 201121515--201121635 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
201121505 CCCTCCCCAA
* *
201121515 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
* *
201121574 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
201121632 TCCC
1 TCCC
201121636 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
Found at i:201122113 original size:24 final size:24
Alignment explanation
Indices: 201122038--201122114 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 24
201122028 CCGGTTAGGT
* *
201122038 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
* * **
201122062 TTCCGGCGGTGGTCCGGCGAGCTT
1 TCCCGGCGGTGCTCCGGCGAGCCA
* *
201122086 TCCCGGCAGTGCTCCGGTGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
201122110 TCCCG
1 TCCCG
201122115 AAATATAGAA
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.09, C:0.38, G:0.34, T:0.19
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:201122599 original size:42 final size:43
Alignment explanation
Indices: 201122390--201123053 Score: 553
Period size: 43 Copynumber: 15.2 Consensus size: 43
201122380 TGGATATGCA
* * *
201122390 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
201122433 GGAGCCTC-GGCAACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGC-ACCATCGGCAACCTAGGCCCCTGGTCGTGCG
201122476 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
201122519 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
***
201122562 GGAGCCTCAAACACCATCGG-AACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
201122604 GGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
201122646 GGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * ** *
201122688 GGA-CCTGGTCGTGTGGGAGCC-TCGGGC-ACCATCGGCAACCTAGG-C-CCCT
1 GGAGCC---TC--G-GGCA-CCATC-GGCAACC-TAGGC-CCCT-GGTCGTGCG
* * * * *
201122737 GG-TCGTGCGGG-AGCC-TCAAG-TACCATCGGCACCCTAGGCCCTTGGTCGTGCG
1 GGAGCCT-CGGGCA-CCATC-GGCAACC-TAGG----C----CCC-TGGTCGTGCG
* * ** *
201122789 AGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCG
*
201122831 GGAGCCT-GGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
201122874 GGAGCCTCGGGCACCATCGGC-ACCTTAGTG--CTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCCTGG-TCGTGCG
* * * * *
201122916 GGAGCCTCGGACACCATCGGAAACCTCGGCCCTTGGTCGTGCC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* *
201122959 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* **
201123002 GGAGCCTCGGGCACCATCGGC-ACCTTGGTACCTCGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCT-GG-TCGTGCG
201123045 GGAGCCTCG
1 GGAGCCTCG
201123054 AGCAGCACTG
Statistics
Matches: 521, Mismatches: 53, Indels: 94
0.78 0.08 0.14
Matches are distributed among these distances:
41 19 0.04
42 154 0.30
43 278 0.53
44 12 0.02
45 1 0.00
46 2 0.00
47 4 0.01
48 6 0.01
49 13 0.02
50 8 0.02
51 7 0.01
52 12 0.02
53 5 0.01
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.17
Consensus pattern (43 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
Found at i:201122696 original size:15 final size:15
Alignment explanation
Indices: 201122676--201122705 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
201122666 AACCTAGGCC
201122676 CCTGGTCGTGCGGGA
1 CCTGGTCGTGCGGGA
*
201122691 CCTGGTCGTGTGGGA
1 CCTGGTCGTGCGGGA
201122706 GCCTCGGGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.47, T:0.23
Consensus pattern (15 bp):
CCTGGTCGTGCGGGA
Found at i:201122736 original size:58 final size:57
Alignment explanation
Indices: 201122634--201122748 Score: 212
Period size: 58 Copynumber: 2.0 Consensus size: 57
201122624 AACCTAGGCC
201122634 CCTGGTCGTGCGGGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
1 CCTGGTCGTGCGGGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
*
201122691 CCTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
1 CCTGGTCGTGCGGGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
201122749 GCCTCAAGTA
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
57 22 0.39
58 34 0.61
ACGTcount: A:0.12, C:0.33, G:0.38, T:0.17
Consensus pattern (57 bp):
CCTGGTCGTGCGGGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
Found at i:201122833 original size:143 final size:142
Alignment explanation
Indices: 201122550--201122810 Score: 391
Period size: 143 Copynumber: 1.8 Consensus size: 142
201122540 AACCTAGGCC
*
201122550 CCTGGTCGTGCGGGAGCCTCAAACACCATCGGAACCTAGGCCCCTGGTCGTGCGGGAGCTCGGAC
1 CCTGGTCGTGCGGGAGCCTCAAACACCATCGGAACCTAGGCCCCTGGTCGTGCGGGAGCTCAGAC
*
201122615 ACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGACCATCGGCAACCTAGGCCCCTG
66 ACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGACCATCGGCAACCTAGGCCCCTG
201122680 GTCGTGCGGGA-
131 GTCGTGCGGGAG
* ***
201122691 CCTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCA-
1 CCTGGTCGTGCGGGAGCCTCAAACACCATCGG-AACCTAGGCCCCTGGTCGTGCGGGAG-CTCAG
* * *
201122755 AGTACCATCGGCACCCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
64 A-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCA
201122811 CCTTGGTGCT
Statistics
Matches: 107, Mismatches: 9, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
141 28 0.26
142 27 0.25
143 42 0.39
144 10 0.09
ACGTcount: A:0.16, C:0.35, G:0.34, T:0.16
Consensus pattern (142 bp):
CCTGGTCGTGCGGGAGCCTCAAACACCATCGGAACCTAGGCCCCTGGTCGTGCGGGAGCTCAGAC
ACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGACCATCGGCAACCTAGGCCCCTG
GTCGTGCGGGAG
Found at i:201122884 original size:85 final size:84
Alignment explanation
Indices: 201122691--201123093 Score: 422
Period size: 85 Copynumber: 4.7 Consensus size: 84
201122681 TCGTGCGGGA
* * ** * *
201122691 CCTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCT-C
1 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTGG
* * *
201122754 AAGTACCATCGGCACCCTAGGCC
64 GA-CACCATCGG-AACCTAGGCC
* *
201122777 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTGGGA
1 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTGGGA
201122842 CACCATCGGTAACCTAGGCC
66 CACCATCGG-AACCTAGGCC
* *
201122862 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCGGA
1 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTGGGA
*
201122927 CACCATCGGAAACCTCGGCC
66 CACCATCGG-AACCTAGGCC
* * * * **
201122947 CTTGGTCGTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
1 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTTGGTGCTTGGAT-GTGCGGGAGCCT-G
* * **
201123011 GG-CACCATCGGCACCTTGGTA
63 GGACACCATCGGAACCTAGGCC
* *
201123032 CCTCGGAT-GTGCGGGAGCCTCGAGCAGCA-CTGGCACCTTGGTGCTTGGATGTGCGGGAGCCT
1 CCT-GG-TCGTGCGGGAGCCTCGGGCACCATC-GGCACCTTGGTGCTTGGATGTGCGGGAGCCT
201123094 CTGTGACATC
Statistics
Matches: 270, Mismatches: 38, Indels: 19
0.83 0.12 0.06
Matches are distributed among these distances:
85 181 0.67
86 86 0.32
87 3 0.01
ACGTcount: A:0.14, C:0.32, G:0.35, T:0.19
Consensus pattern (84 bp):
CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTGGGA
CACCATCGGAACCTAGGCC
Found at i:201123067 original size:43 final size:42
Alignment explanation
Indices: 201122702--201123094 Score: 266
Period size: 43 Copynumber: 9.2 Consensus size: 42
201122692 CTGGTCGTGT
* * *
201122702 GGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCCTGG-TCGTGC
1 GGGAGCCTCGAGCACCATCGGC-ACCTTGGTCCTC-GGAT-GTGC
* * * * *
201122745 GGGAGCCTCAAGTACCATCGGCACCCTAGGCCCTTGG-TCGTGC
1 GGGAGCCTCGAGCACCATCGGCA-CCTTGGTCCTCGGAT-GTGC
* * * *
201122788 GAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGC
1 GGGAGCCTCGAGCACCATCGGCACCTTGGTCCTCGGATGTGC
* * * *
201122830 GGGAGCCT-GGGACACCATCGGTAACCTAGG-CCCCTGG-TCGTGC
1 GGGAGCCTCGAG-CACCATCGG-CACCTTGGTCCTC-GGAT-GTGC
* * * *
201122873 GGGAGCCTCGGGCACCATCGGCACCTTAGTGCTTGGATGTGC
1 GGGAGCCTCGAGCACCATCGGCACCTTGGTCCTCGGATGTGC
* * * *
201122915 GGGAGCCTCG-GACACCATCGGAAACCTCGGCCCTTGG-TCGTGC
1 GGGAGCCTCGAG-CACCATCGG-CACCTTGGTCCTCGGAT-GTGC
* * * * * *
201122958 CGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGC
1 GGGAGCCTCGAGCACCATCGG-CACCTTGGTCCTCGGAT-GTGC
*
201123001 GGGAGCCTCGGGCACCATCGGCACCTTGGTACCTCGGATGTGC
1 GGGAGCCTCGAGCACCATCGGCACCTTGGT-CCTCGGATGTGC
* * *
201123044 GGGAGCCTCGAGCAGCA-CTGGCACCTTGGTGCTTGGATGTGC
1 GGGAGCCTCGAGCACCATC-GGCACCTTGGTCCTCGGATGTGC
201123086 GGGAGCCTC
1 GGGAGCCTC
201123095 TGTGACATCC
Statistics
Matches: 292, Mismatches: 41, Indels: 35
0.79 0.11 0.10
Matches are distributed among these distances:
41 4 0.01
42 90 0.31
43 191 0.65
44 7 0.02
ACGTcount: A:0.15, C:0.32, G:0.35, T:0.18
Consensus pattern (42 bp):
GGGAGCCTCGAGCACCATCGGCACCTTGGTCCTCGGATGTGC
Found at i:201123079 original size:128 final size:126
Alignment explanation
Indices: 201122342--201123094 Score: 664
Period size: 128 Copynumber: 5.8 Consensus size: 126
201122332 GACGTCAGTG
* * * * *
201122342 GTGCGAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATATGCAGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGT-CCTTGGATGTGCGGGAGCCTCGG-CACCAT
* ** * * *
201122407 CGGCAACCTAGGCCCTTGG-TCGTGCAGGAGCCTC-GGCAACCATCGGCAACCTAGGCCCTTGGT
64 CGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGC-ACCATCGGTAACCTAGGCCCCTGGT
201122470 C
126 C
* * * *
201122471 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGAGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTCCTTGGAT-GTGCGGGAGCCTC-GGCACCA
* ** * ***
201122535 TCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCAAACACCATCGG-AACCTAGGCCCCTGGT
63 TCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGT
201122598 C
126 C
* * * * *
201122599 GTGCGGGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTCCTTGGAT-GTGCGGGAGCCTCGGCACCAT
* * * *
201122662 CGGCAACCTAGGCCCCTGGTCGTGCGGGACCTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAAC
64 CGGC-ACCTTGG----T-G-C-T--TGGA-----T-GTGCGGGAGCCTCGGGCACCATCGGTAAC
201122727 CTAGGCCCCTGGTC
113 CTAGGCCCCTGGTC
** * * * *
201122741 GTGCGGGAGCCTCAAGTACCATCGGCACCCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA-CCTTGGTCCTTGGAT-GTGCGGGAGCCTC-GGCACCA
201122805 TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCT-GGGACACCATCGGTAACCTAGGCCCCTGGTC
63 TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGG-CACCATCGGTAACCTAGGCCCCTGGTC
* *
201122869 GTGCGGGAGCCTCGGGCACCATCGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTCCTTGGATGTGCGGGAGCCTCGG-CACCATC
* * ** * *
201122934 GGAAACCTCGGCCCTTGG-TCGTGCCGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
65 GG-CACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
* *
201122997 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTACCTCGGATGTGCGGGAGCCTCGAGCAGCA-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGT-CCTTGGATGTGCGGGAGCCTCG-GCACCAT
201123061 CTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC
64 C-GGCACCTTGGTGCTTGGATGTGCGGGAGCCTC
201123095 TGTGACATCC
Statistics
Matches: 532, Mismatches: 59, Indels: 67
0.81 0.09 0.10
Matches are distributed among these distances:
126 21 0.04
127 78 0.15
128 193 0.36
129 115 0.22
130 10 0.02
132 1 0.00
134 3 0.01
135 2 0.00
136 1 0.00
137 1 0.00
138 1 0.00
139 1 0.00
141 23 0.04
142 27 0.05
143 44 0.08
144 11 0.02
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (126 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTCCTTGGATGTGCGGGAGCCTCGGCACCATCG
GCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
Found at i:201132497 original size:29 final size:28
Alignment explanation
Indices: 201132432--201132503 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
201132422 AAAATTGTAC
*
201132432 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
*
201132460 AACACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
201132489 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
201132504 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.46
29 19 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:201141872 original size:59 final size:59
Alignment explanation
Indices: 201141780--201141891 Score: 197
Period size: 59 Copynumber: 1.9 Consensus size: 59
201141770 AATCCAAAAG
*
201141780 TAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCGTCCCAAAGCT
1 TAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCGTCCCAAAGCT
* *
201141839 TAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCGTCCC
1 TAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCGTCCC
201141892 TGTCCCTCCC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (59 bp):
TAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCGTCCCAAAGCT
Found at i:201142360 original size:24 final size:24
Alignment explanation
Indices: 201142285--201142361 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 24
201142275 CCGGTTAGGT
* *
201142285 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
* * **
201142309 TTCCGGCGGTGGTCCGGCGAGCTT
1 TCCCGGCGGTGCTCCGGCGAGCCA
* *
201142333 TCCCGGCAGTGCTCCGGTGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
201142357 TCCCG
1 TCCCG
201142362 AAATATAAAA
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.09, C:0.38, G:0.34, T:0.19
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:201148066 original size:40 final size:39
Alignment explanation
Indices: 201147898--201148068 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
201147888 AGAAATTGAA
* *
201147898 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
201147938 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
201147978 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
201148018 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
201148058 TGATATCCGGG
1 TGATATCCGGG
201148069 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:201152126 original size:40 final size:39
Alignment explanation
Indices: 201152081--201152288 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
201152071 CGGAATACAA
*
201152081 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
201152121 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
201152161 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
201152201 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
201152241 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
201152281 CCGGATAT
1 CCGGATAT
201152289 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:201152221 original size:80 final size:80
Alignment explanation
Indices: 201152081--201152287 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
201152071 CGGAATACAA
* * *
201152081 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
201152145 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
201152161 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
201152225 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
201152241 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
201152288 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:201154096 original size:42 final size:43
Alignment explanation
Indices: 201153988--201154159 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
201153978 AGCTCGTACA
* * * *
201153988 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCATATATCG
*
201154031 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCATATATCG
* * * * *
201154073 ATGCCAATGTCCGAGGCATGGTCTGATACGTAAATCATA-AGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCATATA-TCG
** * * * *
201154117 ATGCCAACGTCCCAGATGTGGTCTTCCATGAAAACACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCATATATCG
201154160 GATCGTATGT
Statistics
Matches: 101, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
42 27 0.27
43 50 0.50
44 24 0.24
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCATATATCG
Found at i:201165176 original size:40 final size:40
Alignment explanation
Indices: 201165103--201165309 Score: 175
Period size: 40 Copynumber: 5.2 Consensus size: 40
201165093 CAATTGAATG
* ** * ** *
201165103 ATATCCGGGCTAAGTCCTTAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
201165143 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
201165183 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
201165223 AAATCCGGGCTAATA-CCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
201165262 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
201165302 ATATCCGG
1 ATATCCGG
201165310 TTGTATTCCG
Statistics
Matches: 137, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
39 38 0.28
40 95 0.69
41 4 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:201165248 original size:39 final size:40
Alignment explanation
Indices: 201165141--201165309 Score: 191
Period size: 40 Copynumber: 4.2 Consensus size: 40
201165131 ATGCTAGTAA
* *
201165141 TTATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGT-G
1 TTATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTCG
** * *
201165180 ACCACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
* * *
201165221 TTAAATCCGGGCTAATA-CCGAAGGCATTTGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
* * *
201165260 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
201165300 TTATATCCGG
1 TTATATCCGG
201165310 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 38 0.35
40 69 0.64
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
Found at i:201167380 original size:29 final size:28
Alignment explanation
Indices: 201167346--201167448 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
201167336 TACTCAATCA
*
201167346 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
201167375 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
201167404 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
201167433 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
201167449 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:201193530 original size:24 final size:24
Alignment explanation
Indices: 201193503--201193553 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
201193493 AATGAGGAGG
201193503 TCTTAAATAGCAATTTGACCAATT
1 TCTTAAATAGCAATTTGACCAATT
201193527 TCTTAAATAGCAATTTGACCAATT
1 TCTTAAATAGCAATTTGACCAATT
201193551 TCT
1 TCT
201193554 AAGTCTATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (24 bp):
TCTTAAATAGCAATTTGACCAATT
Found at i:201199156 original size:40 final size:40
Alignment explanation
Indices: 201199111--201199240 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
201199101 CGGAATACAA
201199111 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
201199151 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
201199191 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
201199231 CCGGATATAA
1 CCGGATATAA
201199241 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:201202436 original size:24 final size:24
Alignment explanation
Indices: 201202409--201202639 Score: 363
Period size: 24 Copynumber: 9.6 Consensus size: 24
201202399 CTTATTATGT
* * *
201202409 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
201202433 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
201202457 TCGCACACGTAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
201202481 TCGCACACTTAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
201202505 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
201202529 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
201202553 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
201202577 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
201202601 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
201202625 TCGCACACATAGTGC
1 TCGCACACATAGTGC
201202640 ATTTGAGATA
Statistics
Matches: 197, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 197 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:201209070 original size:34 final size:31
Alignment explanation
Indices: 201209026--201209101 Score: 82
Period size: 34 Copynumber: 2.4 Consensus size: 31
201209016 GAGCCCATTG
*
201209026 GGCCTAAGCCCTATTCAG-ATAACAGTACACAGTA
1 GGCCTTAGCCCTATTCAGAAT-ACAGTA-ACA--A
* *
201209060 GGCCTTAGCCCTTTTCAGAATACAGTAGCAA
1 GGCCTTAGCCCTATTCAGAATACAGTAACAA
201209091 GGCCTTAGCCC
1 GGCCTTAGCCC
201209102 CTTTTTACAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
31 12 0.32
33 2 0.05
34 22 0.58
35 2 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (31 bp):
GGCCTTAGCCCTATTCAGAATACAGTAACAA
Found at i:201209498 original size:28 final size:28
Alignment explanation
Indices: 201209452--201209520 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
201209442 TTTAAAACCC
*
201209452 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
201209479 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
201209507 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
201209521 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:201212410 original size:47 final size:47
Alignment explanation
Indices: 201212357--201212682 Score: 299
Period size: 47 Copynumber: 7.3 Consensus size: 47
201212347 ATAAGATATG
* * *
201212357 TATATGTGGTAAAGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAAGCCGAATGGCCAATGTGACGAATGTGAATATGTA
*
201212404 TATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAATATGTA
1 TATATGTGATAAAGCCGAATGGCCAATGTGACGAATGTGAATATGTA
* * *
201212451 TATATGTGAT-AA--TG--TGACGAATGTGA--ATATGT--ATA--TA
1 TATATGTGATAAAGCCGAATGGCCAATGTGACGA-ATGTGAATATGTA
* * * * * *
201212488 TGTG----ATAAGGCCAAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAAGCCGAATGGCCAATGTGACGAATGTGAATATGTA
* *
201212531 TATATGTGATAAGGCCGAATGGCCAATGTGAC-AATGTGAATGTGTA
1 TATATGTGATAAAGCCGAATGGCCAATGTGACGAATGTGAATATGTA
** * *
201212577 TATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAATGTGTA
1 TATATGTGATAAAGCCGAATGGCCAATGTGACGAATGTGAATATGTA
* * * *
201212624 TATATGTGATAAGGCCAAATGGCCAATGTGATGGATGTGAA-AGTGTA
1 TATATGTGATAAAGCCGAATGGCCAATGTGACGAATGTGAATA-TGTA
*
201212671 TAAATGTGATAA
1 TATATGTGATAA
201212683 GTCCCGAAGG
Statistics
Matches: 234, Mismatches: 27, Indels: 36
0.79 0.09 0.12
Matches are distributed among these distances:
33 2 0.01
34 1 0.00
37 4 0.02
38 10 0.04
39 7 0.03
40 2 0.01
41 6 0.03
42 10 0.04
43 4 0.02
44 1 0.00
46 45 0.19
47 142 0.61
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (47 bp):
TATATGTGATAAAGCCGAATGGCCAATGTGACGAATGTGAATATGTA
Found at i:201212465 original size:8 final size:9
Alignment explanation
Indices: 201212438--201212494 Score: 54
Period size: 8 Copynumber: 6.9 Consensus size: 9
201212428 AATGTGACGA
201212438 ATGTGA-AT
1 ATGTGATAT
201212446 ATGT-ATAT
1 ATGTGATAT
201212454 ATGTGATA-
1 ATGTGATAT
*
201212462 ATGTGACGA-
1 ATGTGA-TAT
201212471 ATGTGA-AT
1 ATGTGATAT
201212479 ATGT-ATAT
1 ATGTGATAT
201212487 ATGTGATA
1 ATGTGATA
201212495 AGGCCAAATG
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
7 3 0.07
8 26 0.62
9 13 0.31
ACGTcount: A:0.37, C:0.02, G:0.23, T:0.39
Consensus pattern (9 bp):
ATGTGATAT
Found at i:201212466 original size:33 final size:33
Alignment explanation
Indices: 201212428--201212495 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
201212418 CCGAATGGCC
201212428 AATGTGACGAATGTGAATATGTATATATGTGAT
1 AATGTGACGAATGTGAATATGTATATATGTGAT
201212461 AATGTGACGAATGTGAATATGTATATATGTGAT
1 AATGTGACGAATGTGAATATGTATATATGTGAT
201212494 AA
1 AA
201212496 GGCCAAATGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.38, C:0.03, G:0.24, T:0.35
Consensus pattern (33 bp):
AATGTGACGAATGTGAATATGTATATATGTGAT
Found at i:201212491 original size:80 final size:80
Alignment explanation
Indices: 201212381--201212542 Score: 279
Period size: 80 Copynumber: 2.0 Consensus size: 80
201212371 CCGAATGGCC
* * *
201212381 AATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTGACGAATGTGAAT
1 AATGTGACGAATGTGAATATGTATATATGTGATAAGGCCAAATGGCCAATGTGACGAATGTGAAT
201212446 ATGTATATATGTGAT
66 ATGTATATATGTGAT
*
201212461 AATGTGACGAATGTGAATATGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAT
1 AATGTGACGAATGTGAATATGTATATATGTGATAAGGCCAAATGGCCAATGTGACGAATGTGAAT
*
201212526 GTGTATATATGTGAT
66 ATGTATATATGTGAT
201212541 AA
1 AA
201212543 GGCCGAATGG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (80 bp):
AATGTGACGAATGTGAATATGTATATATGTGATAAGGCCAAATGGCCAATGTGACGAATGTGAAT
ATGTATATATGTGAT
Found at i:201212580 original size:93 final size:93
Alignment explanation
Indices: 201212461--201212683 Score: 356
Period size: 93 Copynumber: 2.4 Consensus size: 93
201212451 TATATGTGAT
*
201212461 AATGTGACGAATGTGAATATGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAT
1 AATGTGAC-AATGTGAATGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAT
*
201212526 GTGTATATATGTGATAAGGCCGAATGGCC
65 GTGTATATATGTGATAAGGCCAAATGGCC
* *
201212555 AATGTGACAATGTGAATGTGTATATATGTGATACGGCCGAATGGCCAATGTGATGAATGTGAATG
1 AATGTGACAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAATG
201212620 TGTATATATGTGATAAGGCCAAATGGCC
66 TGTATATATGTGATAAGGCCAAATGGCC
** * *
201212648 AATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGA-CAATGTGAATGTGTATATATGTGATAAG
201212684 TCCCGAAGGG
Statistics
Matches: 119, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
93 88 0.74
94 31 0.26
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (93 bp):
AATGTGACAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAATG
TGTATATATGTGATAAGGCCAAATGGCC
Found at i:201212683 original size:47 final size:47
Alignment explanation
Indices: 201212461--201212683 Score: 358
Period size: 47 Copynumber: 4.8 Consensus size: 47
201212451 TATATGTGAT
* *
201212461 AATGTGACGAATGTGAATATGTATATATGTGATAAGGCCAAATGGCC
1 AATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCC
*
201212508 AATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCC
* * *
201212555 AATGTGA-CAATGTGAATGTGTATATATGTGATACGGCCGAATGGCC
1 AATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCC
201212601 AATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCC
1 AATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCC
* * *
201212648 AATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGATGAATGTGAATGTGTATATATGTGATAAG
201212684 TCCCGAAGGG
Statistics
Matches: 164, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 44 0.27
47 120 0.73
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
AATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCAAATGGCC
Found at i:201222176 original size:28 final size:28
Alignment explanation
Indices: 201222130--201222198 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
201222120 TTTAAAACCC
*
201222130 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
201222157 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
201222185 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
201222199 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:201223844 original size:20 final size:20
Alignment explanation
Indices: 201223821--201223858 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
201223811 CACATCCAAA
*
201223821 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
201223841 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
201223859 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:201228135 original size:46 final size:46
Alignment explanation
Indices: 201228080--201228260 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
201228070 TAGGATGGTT
201228080 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
201228126 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
201228172 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
201228219 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
201228261 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:201228241 original size:93 final size:93
Alignment explanation
Indices: 201228082--201228252 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
201228072 GGATGGTTGA
* *
201228082 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
201228147 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
201228175 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
201228240 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
201228253 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:201231252 original size:15 final size:15
Alignment explanation
Indices: 201231213--201231291 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
201231203 GTATCTTGGG
*
201231213 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
201231228 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
201231243 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
201231257 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
201231272 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
201231286 TTTCTT
1 TTTCTT
201231292 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:201231276 original size:29 final size:29
Alignment explanation
Indices: 201231204--201231290 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
201231194 CATAGTATCG
* * * *
201231204 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
201231234 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
201231263 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
201231291 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:201233715 original size:46 final size:46
Alignment explanation
Indices: 201233660--201233840 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
201233650 TAGGATGGTT
201233660 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
201233706 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
201233752 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
201233799 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
201233841 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:201233821 original size:93 final size:93
Alignment explanation
Indices: 201233662--201233832 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
201233652 GGATGGTTGA
* *
201233662 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
201233727 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
201233755 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
201233820 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
201233833 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:201238481 original size:27 final size:27
Alignment explanation
Indices: 201238451--201238512 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
201238441 TTTAAAACCC
201238451 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCGGTAATTTTGCTCTT
*
201238478 TA-GGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGT-ATATCGGTAATTTTGCTCTT
201238505 TAGGGGTA
1 TAGGGGTA
201238513 ATTTCGTGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 4 0.12
27 24 0.75
28 4 0.12
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (27 bp):
TAGGGGTATATCGGTAATTTTGCTCTT
Found at i:201239538 original size:14 final size:13
Alignment explanation
Indices: 201239514--201239547 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
201239504 ATTCGGCAAA
201239514 AGTGTTGATGAAT
1 AGTGTTGATGAAT
201239527 AGTGTATGATGAAT
1 AGTGT-TGATGAAT
201239541 AGT-TTGA
1 AGTGTTGA
201239548 AGAAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 3 0.15
13 6 0.30
14 11 0.55
ACGTcount: A:0.32, C:0.00, G:0.29, T:0.38
Consensus pattern (13 bp):
AGTGTTGATGAAT
Found at i:201250202 original size:71 final size:71
Alignment explanation
Indices: 201250081--201250214 Score: 223
Period size: 71 Copynumber: 1.9 Consensus size: 71
201250071 GTTTTCCAAG
* *
201250081 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
201250146 GTTTCA
66 GTTTCA
* * *
201250152 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
201250215 CTACTTTTTA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:201250255 original size:160 final size:160
Alignment explanation
Indices: 201249990--201250372 Score: 714
Period size: 160 Copynumber: 2.4 Consensus size: 160
201249980 TTGTTTTTTC
201249990 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
201250055 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
201250120 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
*
201250150 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
201250215 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
201250280 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
* * *
201250310 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTC-GGGCACGCTGAGGCAATTTCAATT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
201250373 CCTATTAAAT
Statistics
Matches: 217, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
159 22 0.10
160 195 0.90
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (160 bp):
CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTACTTTTTAATTCATGTTTTCCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTAATTTCAATTTATGTTT
Found at i:201250399 original size:73 final size:71
Alignment explanation
Indices: 201250241--201250488 Score: 216
Period size: 71 Copynumber: 3.5 Consensus size: 71
201250231 GTTTTCCAAG
* * * * *
201250241 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACACGCTGAGGCAATTTCAATTTAT
*
201250306 GTTTCA
66 GTATCA
* * *
201250312 AAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTC-GGGCACGCTGAGGCAATTTCAATTCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACACGCTGAGGCAATTTCAATT--T
*
201250376 AT-TAAATCT
64 ATGT--ATCA
* *** * * *
201250385 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGCGACACGCTAAGGTATTTTCAAATTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACACGCTGAGGCAATTTC-AATT-T
*
201250450 AT-TTTCA
64 ATGTATCA
* * *
201250457 AAAGTTAATTCATATTGCGA-AAGGTGAGTTGA
1 AAAATCAACTCATATTGCGAGAA-GTGAGTTGA
201250489 GTCTTTTTAA
Statistics
Matches: 146, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
70 20 0.14
71 36 0.25
72 31 0.21
73 36 0.25
74 19 0.13
75 4 0.03
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGACACGCTGAGGCAATTTCAATTTAT
GTATCA
Found at i:201250607 original size:67 final size:67
Alignment explanation
Indices: 201250527--201250755 Score: 320
Period size: 67 Copynumber: 3.4 Consensus size: 67
201250517 GTTTTTTAAT
201250527 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTTTCAAAATCT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTTTCAAAATCT
201250592 AC
66 AC
* *
201250594 TTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTCTCAAAATCT
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTTTCAAAATCT
201250659 AC
66 AC
* * * * **
201250661 TTTTCAAATTATTAACTCATGTTGCGAGAGGTGAGTTGAGCCTTTTAA-TTTCTGCTTTT-AATT
1 TTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTTAATTTTC-GTTTTTCAAAA
201250724 TCTA-
63 TCTAC
*
201250728 TGTTTCAAAAATCAACCCATATTGCGAG
1 T-TTTCAAAAATCAACTCATATTGCGAG
201250756 GAATGTGTTG
Statistics
Matches: 145, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
67 89 0.61
68 47 0.32
69 9 0.06
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (67 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTTTCAAAATCT
AC
Found at i:201250720 original size:13 final size:13
Alignment explanation
Indices: 201250702--201250726 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
201250692 TGAGTTGAGC
201250702 CTTTTAATTTCTG
1 CTTTTAATTTCTG
201250715 CTTTTAATTTCT
1 CTTTTAATTTCT
201250727 ATGTTTCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.04, T:0.64
Consensus pattern (13 bp):
CTTTTAATTTCTG
Found at i:201252566 original size:13 final size:14
Alignment explanation
Indices: 201252542--201252572 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
201252532 ATCATTATTA
201252542 ATATTAATATATGT
1 ATATTAATATATGT
201252556 ATATT-ATATATGT
1 ATATTAATATATGT
201252569 ATAT
1 ATAT
201252573 ATTCGTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATATTAATATATGT
Found at i:201252792 original size:12 final size:11
Alignment explanation
Indices: 201252771--201252800 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
201252761 TTCTTAATAT
201252771 TATATTTTATA
1 TATATTTTATA
201252782 TATATTATTATA
1 TATATT-TTATA
201252794 TATATTT
1 TATATTT
201252801 AAATATCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TATATTTTATA
Found at i:201255488 original size:137 final size:136
Alignment explanation
Indices: 201255164--201255449 Score: 412
Period size: 137 Copynumber: 2.1 Consensus size: 136
201255154 GAGTAGTCTC
** * * * *
201255164 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATGC
1 CCCAAATGGGCTTGCATATGGCTA-TGATGCTGCATGGACTTTGAAATGGGCCTATGGGCCATAC
*
201255229 TATTATCTGAATAAGGGGCTAAAGCCCAGTTTATTGTAATCTGAAAAGGGCTCTTGCCCAGTACC
65 TATTATCTGAATAAGGGGCTAAAGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
201255294 ACTGTTA
130 ACTGTTA
** * * *
201255301 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGGCTA-TGATGCTGCATGGACTTTGAAATGGGCCTATGGGCCATAC
*
201255366 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCT-AAAAGGGCTCTGGCCCAGTACC
65 TATTATCTGAATAAGGGGCTAAAGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
201255430 ACTGTTA
130 ACTGTTA
**
201255437 CCTGAATGGGCTT
1 CCCAAATGGGCTT
201255450 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 39 0.27
137 105 0.73
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGGCTATGATGCTGCATGGACTTTGAAATGGGCCTATGGGCCATACT
ATTATCTGAATAAGGGGCTAAAGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:201256913 original size:22 final size:22
Alignment explanation
Indices: 201256870--201256913 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
201256860 CCGGAGCTCC
* *
201256870 CTCTCCCTCTCCCCTTTCTTTT
1 CTCTCCCTCTCCCCTCTATTTT
* *
201256892 CTCTCCCTCTTCTCTCTATTTT
1 CTCTCCCTCTCCCCTCTATTTT
201256914 TTTTCCTTTC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.02, C:0.45, G:0.00, T:0.52
Consensus pattern (22 bp):
CTCTCCCTCTCCCCTCTATTTT
Found at i:201257482 original size:13 final size:14
Alignment explanation
Indices: 201257458--201257488 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
201257448 ATCATTATTA
201257458 ATATTAATATATGT
1 ATATTAATATATGT
201257472 ATATT-ATATATGT
1 ATATTAATATATGT
201257485 ATAT
1 ATAT
201257489 ATTCGTACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATATTAATATATGT
Found at i:201257708 original size:12 final size:11
Alignment explanation
Indices: 201257687--201257716 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
201257677 TTCTTAATAT
201257687 TATATTTTATA
1 TATATTTTATA
201257698 TATATTATTATA
1 TATATT-TTATA
201257710 TATATTT
1 TATATTT
201257717 AAATATCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TATATTTTATA
Found at i:201260173 original size:24 final size:24
Alignment explanation
Indices: 201260127--201260173 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
201260117 AGGACCGTAA
**
201260127 AGGAGTTCCAAGATATTTTTCCGG
1 AGGAGTTCCAAGATATTCCTCCGG
201260151 AGGAGCTTCCAAGAT-TTCCTCCG
1 AGGAG-TTCCAAGATATTCCTCCG
201260174 AACCGAGAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (24 bp):
AGGAGTTCCAAGATATTCCTCCGG
Found at i:201262082 original size:26 final size:26
Alignment explanation
Indices: 201262045--201262128 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
201262035 TGATACAAAT
*
201262045 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
201262071 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
201262097 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
201262123 TGATAA
1 TGATAA
201262129 GAATCATGTC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:201263637 original size:26 final size:26
Alignment explanation
Indices: 201263608--201263660 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
201263598 TTTACAGTTT
201263608 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
201263634 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
201263660 T
1 T
201263661 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:201264154 original size:137 final size:137
Alignment explanation
Indices: 201263908--201264194 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
201263898 GAGTAGTCTC
201263908 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
201263973 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
201264038 ACTGTTA
131 ACTGTTA
201264045 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
201264110 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
201264175 ACTGTTA
131 ACTGTTA
**
201264182 CCTGAATGGGCTT
1 CCCAAATGGGCTT
201264195 AGGCCCAATG
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:201265420 original size:30 final size:29
Alignment explanation
Indices: 201265386--201265450 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
201265376 AACGAGGAAA
201265386 TAGAAACCCCATAAGTTAGGGTACGATTTC
1 TAGAAACCCCA-AAGTTAGGGTACGATTTC
**** *
201265416 TAGAAATTTTAAATTTAGGGTACGATTTC
1 TAGAAACCCCAAAGTTAGGGTACGATTTC
201265445 TAGAAA
1 TAGAAA
201265451 TTTGAAATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 23 0.77
30 7 0.23
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.32
Consensus pattern (29 bp):
TAGAAACCCCAAAGTTAGGGTACGATTTC
Found at i:201265435 original size:29 final size:29
Alignment explanation
Indices: 201265401--201265458 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
201265391 ACCCCATAAG
*
201265401 TTAGGGTACGATTTCTAGAAATTTTAAAT
1 TTAGGGTACGATTTCTAGAAATTTGAAAT
201265430 TTAGGGTACGATTTCTAGAAATTTGAAAT
1 TTAGGGTACGATTTCTAGAAATTTGAAAT
201265459 ACAAAATATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (29 bp):
TTAGGGTACGATTTCTAGAAATTTGAAAT
Found at i:201265734 original size:15 final size:14
Alignment explanation
Indices: 201265713--201265749 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
201265703 AAAGGCCAAG
201265713 AATAAAATAAAGTAA
1 AATAAAATAAA-TAA
*
201265728 GATAAAATAAATAA
1 AATAAAATAAATAA
201265742 AATAAAAT
1 AATAAAAT
201265750 GAAGGTTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (14 bp):
AATAAAATAAATAA
Found at i:201267713 original size:45 final size:44
Alignment explanation
Indices: 201267661--201268142 Score: 216
Period size: 44 Copynumber: 10.6 Consensus size: 44
201267651 TTTAATTTAT
* * *
201267661 TCCACTGCAACTTTAGGGAAATAAGATTCACTATCTTCAGTCTAT
1 TCCACTGCAACTTTAGGGAGATAAGATT-ACTATCTTCAATCTAC
* * * * *
201267706 TTCACTGCAACTTTAGGGAGATGAGGTTA--ATGGTTACAATCTGC
1 TCCACTGCAACTTTAGGGAGATAAGATTACTAT-CTT-CAATCTAC
* **
201267750 TCCACTGCAACTTTAGGGAGATGAGATTTGTATCTTCAATCTAC
1 TCCACTGCAACTTTAGGGAGATAAGATTACTATCTTCAATCTAC
* * * * * *
201267794 TCCACTGTAACTTCAGGGAGATAATACTCACTATCTTCAGTCTGC
1 TCCACTGCAACTTTAGGGAGATAAGA-TTACTATCTTCAATCTAC
* * ** ** ** * *
201267839 TCTACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAGTCTGC
1 TCCACTGCAACTTTAGGGAGATAAGATTACTATCTTCAATCTAC
* * * * *
201267883 TCCACTGCAACTTCAGGAAGATAAGATTCGTCATAATTTGTAGCTTTAATCTAT
1 TCCACTGCAACTTTAGGGAGATAAGATT--AC-T-A----T--CTTCAATCTAC
* * * * * * *
201267937 TCCACTACAACTTCAAGGAAATGAGATTCGCTATCTTCAGTCTAC
1 TCCACTGCAACTTTAGGGAGATAAGATT-ACTATCTTCAATCTAC
* * * ** * **
201267982 TCCGCTGTAACTTTAAGGAGATAAGGCTAGTGGCTTCAATCTAC
1 TCCACTGCAACTTTAGGGAGATAAGATTACTATCTTCAATCTAC
* * * * * *
201268026 TCCATTGTAACTTTAAGAAGATAAGATT-CGTCATCTTCGATCTTC
1 TCCACTGCAACTTTAGGGAGATAAGATTAC-T-ATCTTCAATCTAC
* * * * *
201268071 TCCACTACAACTTCAAGGAGATAAGATCTAC-AACTTCAATCTGC
1 TCCACTGCAACTTTAGGGAGATAAGAT-TACTATCTTCAATCTAC
* * * *
201268115 TCTACTGCTACTTCAGGGAGATGAGATT
1 TCCACTGCAACTTTAGGGAGATAAGATT
201268143 TGTGGATTCA
Statistics
Matches: 328, Mismatches: 90, Indels: 40
0.72 0.20 0.09
Matches are distributed among these distances:
42 2 0.01
43 3 0.01
44 164 0.50
45 120 0.37
46 3 0.01
47 3 0.01
51 1 0.00
52 1 0.00
53 1 0.00
54 30 0.09
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
TCCACTGCAACTTTAGGGAGATAAGATTACTATCTTCAATCTAC
Found at i:201267830 original size:133 final size:133
Alignment explanation
Indices: 201267661--201268136 Score: 393
Period size: 133 Copynumber: 3.5 Consensus size: 133
201267651 TTTAATTTAT
* * * * *
201267661 TCCACTGCAACTTTAGGGAAATAAGATTCACTATCTTCAGTCT-ATTTCACTGCAACTTTAGGGA
1 TCCACTGCAACTTCAGGGAAATAAGACTCACTATCTTCAGTCTGCTCT-ACTGCAACTTCAGGGA
* * * * *
201267725 GATGAGGTTAATGG-TTACAATCTGCTCCACTGCAACTTTAGGGAGATGAGATTTGTATCTTCAA
65 GATAAGGCTAATGGCTT-CAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGTATCTTCAA
201267789 TCTAC
129 TCTAC
* * *
201267794 TCCACTGTAACTTCAGGGAGATAATACTCACTATCTTCAGTCTGCTCTACTGCAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAAATAAGACTCACTATCTTCAGTCTGCTCTACTGCAACTTCAGGGAG
** *
201267859 ATAAGGCTGGTGGCTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGTCATAATTTGT
66 ATAAGGCTAATGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGAT-A-A---G-----ATTTGT
* * *
201267924 AGCTTTAATCTAT
121 ATCTTCAATCTAC
* * * * * * ** * * *
201267937 TCCACTACAACTTCAAGGAAATGAGATTCGCTATCTTCAGTCTACTCCGCTGTAACTTTAAGGAG
1 TCCACTGCAACTTCAGGGAAATAAGACTCACTATCTTCAGTCTGCTCTACTGCAACTTCAGGGAG
* * * * * * * *
201268002 ATAAGGCTAGTGGCTTCAATCTACTCCATTGTAACTTTAAGAAGATAAGATTCGTCATCTTCGAT
66 ATAAGGCTAATGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGT-ATCTTCAAT
*
201268067 CTTC
130 CTAC
* * * * * *
201268071 TCCACTACAACTTCAAGGAGATAAGA-TCTAC-AACTTCAATCTGCTCTACTGCTACTTCAGGGA
1 TCCACTGCAACTTCAGGGAAATAAGACTC-ACTATCTTCAGTCTGCTCTACTGCAACTTCAGGGA
201268134 GAT
65 GAT
201268137 GAGATTTGTG
Statistics
Matches: 271, Mismatches: 58, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
133 123 0.45
134 37 0.14
135 1 0.00
138 2 0.01
141 1 0.00
142 1 0.00
143 106 0.39
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (133 bp):
TCCACTGCAACTTCAGGGAAATAAGACTCACTATCTTCAGTCTGCTCTACTGCAACTTCAGGGAG
ATAAGGCTAATGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGTATCTTCAATC
TAC
Found at i:201275150 original size:29 final size:29
Alignment explanation
Indices: 201275116--201275189 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
201275106 CATATTCCAG
201275116 GCACACTTAGTGCCAAATATTTCCAGCAC
1 GCACACTTAGTGCCAAATATTTCCAGCAC
*
201275145 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCAAATATTTCCAGCAC
201275174 GCACACTTAGTGCCAA
1 GCACACTTAGTGCCAA
201275190 TCTCGACACC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.30, C:0.31, G:0.15, T:0.24
Consensus pattern (29 bp):
GCACACTTAGTGCCAAATATTTCCAGCAC
Found at i:201283140 original size:29 final size:27
Alignment explanation
Indices: 201283106--201283290 Score: 205
Period size: 29 Copynumber: 6.6 Consensus size: 27
201283096 TACTCGATTT
* *
201283106 CGCACACTTAGTGCCACGTAATTT-AAGCT
1 CGCACACTTAGTGCCA--T-ATTTCCAGCA
** *
201283135 CGCACACACAGTGCCATA--TCCAGCT
1 CGCACACTTAGTGCCATATTTCCAGCA
*
201283160 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCC--ATATTTCCAGCA
201283189 CGCACACTTAGTGCCATATTTTCCAGCA
1 CGCACACTTAGTGCCATA-TTTCCAGCA
201283217 CGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCC--ATATTTCCAGCA
201283246 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCC--ATATTTCCAGCA
201283275 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
201283291 ATCTCGACAC
Statistics
Matches: 139, Mismatches: 9, Indels: 18
0.84 0.05 0.11
Matches are distributed among these distances:
24 1 0.01
25 16 0.12
26 1 0.01
27 8 0.06
28 24 0.17
29 86 0.62
30 3 0.02
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCCATATTTCCAGCA
Found at i:201283229 original size:57 final size:57
Alignment explanation
Indices: 201283106--201283291 Score: 254
Period size: 57 Copynumber: 3.3 Consensus size: 57
201283096 TACTCGATTT
** * * ** *
201283106 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATA---TCCAGCT
1 CGCACACTTAGTGCCAAAT-ATTTCCAGCACGCACACTTAGTGCCATATTTTCCAGCA
*
201283160 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATTTTCCAGCA
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATTTTCCAGCA
201283217 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATAT-TTTCCAGCA
201283275 CGCACACTTAGTGCCAA
1 CGCACACTTAGTGCCAA
201283292 TCTCGACACC
Statistics
Matches: 118, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
53 4 0.03
54 35 0.30
57 53 0.45
58 26 0.22
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (57 bp):
CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATTTTCCAGCA
Found at i:201288783 original size:26 final size:26
Alignment explanation
Indices: 201288754--201288813 Score: 120
Period size: 26 Copynumber: 2.3 Consensus size: 26
201288744 ATAAATTTCT
201288754 ATTCAAATTTAAAAATTTGAATATTC
1 ATTCAAATTTAAAAATTTGAATATTC
201288780 ATTCAAATTTAAAAATTTGAATATTC
1 ATTCAAATTTAAAAATTTGAATATTC
201288806 ATTCAAAT
1 ATTCAAAT
201288814 CGACCCTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (26 bp):
ATTCAAATTTAAAAATTTGAATATTC
Found at i:201291833 original size:40 final size:40
Alignment explanation
Indices: 201291789--201291890 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
201291779 GCACGAATGC
* *
201291789 CTTCGGGTCTTAGCCCGGATATAGCCGCTAGCACAATTGT
1 CTTCGGGTCTTAGCCCGGATATAACCGCCAGCACAATTGT
* *** *
201291829 CTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGT
1 CTTCGGGTCTTAGCCCGGATATAACCGCCAGCACAATTGT
*
201291869 CTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
201291891 CATTCAATTT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACCGCCAGCACAATTGT
Found at i:201295655 original size:26 final size:28
Alignment explanation
Indices: 201295625--201295693 Score: 124
Period size: 26 Copynumber: 2.5 Consensus size: 28
201295615 ATAGTGAGTC
201295625 CGCACACTTAGTGCTATAT-ATC-AACT
1 CGCACACTTAGTGCTATATGATCAAACT
201295651 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATGATCAAACT
201295679 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
201295694 GTACAAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 19 0.46
27 3 0.07
28 19 0.46
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATGATCAAACT
Found at i:201303666 original size:26 final size:28
Alignment explanation
Indices: 201303636--201303704 Score: 124
Period size: 26 Copynumber: 2.5 Consensus size: 28
201303626 ATAGTGAGTC
201303636 CGCACACTTAGTGCTATAT-ATC-AACT
1 CGCACACTTAGTGCTATATGATCAAACT
201303662 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATGATCAAACT
201303690 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
201303705 GTACAAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 19 0.46
27 3 0.07
28 19 0.46
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATGATCAAACT
Found at i:201307978 original size:29 final size:29
Alignment explanation
Indices: 201307944--201308017 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
201307934 TAATCAGCCG
*
201307944 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATACA-TTTCAAACT
* *
201307973 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATACATTTCAAACT
*
201308002 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
201308018 ATCTCTCAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACATTTCAAACT
Found at i:201316028 original size:29 final size:29
Alignment explanation
Indices: 201315994--201316096 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
201315984 TAATCAGCCG
** *
201315994 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
201316023 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
201316052 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
201316081 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
201316097 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:201326933 original size:68 final size:70
Alignment explanation
Indices: 201326861--201327004 Score: 195
Period size: 71 Copynumber: 2.1 Consensus size: 70
201326851 ACACCCTGTA
* * * *
201326861 GTAGCTAGGTCACATGTGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
201326923 ATAAAT
65 ATAAAT
* *
201326929 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
201326994 ATAAAT
65 ATAAAT
201327000 GTAGC
1 GTAGC
201327005 AAATCGGACA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
68 23 0.35
69 3 0.05
70 1 0.02
71 39 0.59
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.22
Consensus pattern (70 bp):
GTAGCTAGGTCACATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:201335932 original size:29 final size:29
Alignment explanation
Indices: 201335900--201336034 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
201335890 ATACCCTCCG
** * *
201335900 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
201335929 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
201335958 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
201335987 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
201336016 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
201336035 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:201335967 original size:58 final size:58
Alignment explanation
Indices: 201335846--201336035 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
201335836 TACTCGATTT
* * * *** *
201335846 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
201335904 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
201335962 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
201336020 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
201336036 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:201340954 original size:13 final size:13
Alignment explanation
Indices: 201340938--201340970 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
201340928 TTTAATTAAA
*
201340938 TTAGTTAATTAGT
1 TTAGATAATTAGT
201340951 TTAGATAATTAGT
1 TTAGATAATTAGT
201340964 TTA-ATAA
1 TTAGATAA
201340971 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:201357705 original size:40 final size:40
Alignment explanation
Indices: 201357624--201357830 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
201357614 CATTGGAATG
* * * * *
201357624 ATATCCGGGCTAAG-TCCGAAGGCAATT-ATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCACT
***
201357663 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT
* * * *
201357703 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT
* * * *
201357743 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT
* * * * * * *
201357783 ATAACCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT
201357823 ATATCCGG
1 ATATCCGG
201357831 TTAAATCCCG
Statistics
Matches: 138, Mismatches: 28, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
39 17 0.12
40 121 0.88
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACT
Found at i:201357757 original size:80 final size:79
Alignment explanation
Indices: 201357624--201357776 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
201357614 CATTGGAATG
* * ** * *
201357624 ATATCCGGGCTAAGTCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGGCTAAGCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAA
201357689 TCGTGCGAGTTGTT
66 TCGTGCGAGTTGTT
* * * *
201357703 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
201357768 ATCGTGCGA
65 ATCGTGCGA
201357777 ATCACTATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 14 0.22
80 49 0.78
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAA
TCGTGCGAGTTGTT
Found at i:201365726 original size:40 final size:40
Alignment explanation
Indices: 201365667--201365773 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 40
201365657 CATTGGAATG
* * **
201365667 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACC
* * *
201365707 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACC
* *
201365747 AAATCCGGGTTAAGACCCGAAGGCAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
201365774 CGTGCGAATC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACC
Found at i:201365795 original size:40 final size:40
Alignment explanation
Indices: 201365671--201365834 Score: 116
Period size: 40 Copynumber: 4.1 Consensus size: 40
201365661 GGAATGATAT
* ** * * * * *
201365671 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
* * * *
201365711 CCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTTACCA-AA
1 CCGGGCTAAGACCCGAAGGCAATCGTGCGAA-TCACTATAA
*
201365750 TCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
1 -CCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
* * * * * * *
201365791 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
201365831 CCGG
1 CCGG
201365835 TTAAATCCCG
Statistics
Matches: 99, Mismatches: 21, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
39 2 0.02
40 93 0.94
41 4 0.04
ACGTcount: A:0.29, C:0.25, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACTATAA
Found at i:201369723 original size:39 final size:38
Alignment explanation
Indices: 201369679--201369806 Score: 150
Period size: 39 Copynumber: 3.3 Consensus size: 38
201369669 TCGGAAACAA
201369679 CCGGATATAACCACGTGCACGAATGCCTTCGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGTCTTAGC
* **
201369718 CCGGATAGAATGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTC-GGTCTTAGC
* * *
201369758 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGTCTTAGC
201369797 CCGGATATAA
1 CCGGATATAA
201369807 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
39 45 0.61
40 29 0.39
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGTCTTAGC
Found at i:201372953 original size:40 final size:40
Alignment explanation
Indices: 201372894--201373101 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
201372884 CAATTGAATG
* * * *
201372894 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
201372934 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
201372974 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
201373014 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
201373054 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
201373094 ATATCCGG
1 ATATCCGG
201373102 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:201373032 original size:80 final size:80
Alignment explanation
Indices: 201372896--201373101 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
201372886 ATTGAATGAT
* * ** * * *
201372896 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
201372960 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
201372976 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
201373041 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
201373056 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
201373102 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:201379180 original size:40 final size:40
Alignment explanation
Indices: 201379069--201379181 Score: 163
Period size: 40 Copynumber: 2.8 Consensus size: 40
201379059 GCTGAAAATT
* * *
201379069 AATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTA
1 AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGCTA
* * * *
201379109 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTA
1 AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGCTA
201379149 AATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 AATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
201379182 ATCGTGATAT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (40 bp):
AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGCTA
Found at i:201379194 original size:40 final size:38
Alignment explanation
Indices: 201379025--201379211 Score: 155
Period size: 40 Copynumber: 4.8 Consensus size: 38
201379015 TGAGAAATTG
* * *
201379025 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
201379065 AAT-TA-ATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
201379101 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
201379141 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
201379181 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
201379212 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 20, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
36 4 0.03
37 2 0.02
38 2 0.02
39 23 0.19
40 87 0.73
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:201384293 original size:40 final size:40
Alignment explanation
Indices: 201384234--201384441 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
201384224 CAATTGAATG
* * * *
201384234 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
201384274 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
201384314 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
201384354 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
201384394 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
201384434 ATATCCGG
1 ATATCCGG
201384442 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:201384372 original size:80 final size:80
Alignment explanation
Indices: 201384236--201384441 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
201384226 ATTGAATGAT
* * ** * * *
201384236 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
201384300 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
201384316 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
201384381 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
201384396 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
201384442 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:201392326 original size:40 final size:40
Alignment explanation
Indices: 201392267--201392474 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
201392257 CAATTGAATG
* * * *
201392267 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
201392307 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
201392347 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
201392387 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
201392427 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
201392467 ATATCCGG
1 ATATCCGG
201392475 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:201392405 original size:80 final size:80
Alignment explanation
Indices: 201392269--201392474 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
201392259 ATTGAATGAT
* * ** * * *
201392269 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
201392333 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
201392349 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
201392414 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
201392429 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
201392475 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:201400786 original size:40 final size:40
Alignment explanation
Indices: 201400749--201400972 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
201400739 GCTACTCGTT
* *
201400749 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
201400789 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
201400829 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
201400869 CAAATGCCTTCGAG-CTT-AGCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * *
201400907 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
201400948 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
201400973 CATCATTCGA
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
37 1 0.01
38 29 0.18
39 6 0.04
40 113 0.70
41 12 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:201400932 original size:78 final size:79
Alignment explanation
Indices: 201400749--201400968 Score: 277
Period size: 78 Copynumber: 2.8 Consensus size: 79
201400739 GCTACTCGTT
* *
201400749 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTT-AGCCG
*
201400813 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* * *
201400829 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGAG-CTTAGCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCGGA
201400893 ATTAGTAACTCGCA
66 ATTAGTAACTCGCA
* * * * *
201400907 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
201400969 CGGACATCAT
Statistics
Matches: 122, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
77 3 0.02
78 52 0.43
79 18 0.15
80 47 0.39
81 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCGGA
ATTAGTAACTCGCA
Found at i:201405244 original size:28 final size:29
Alignment explanation
Indices: 201405204--201405276 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
201405194 ACCTCGAGCT
** * *
201405204 CGCACACCCAGTGCCGTAT-TTTTCAGCT
1 CGCACACTTAGTGCCGTATATTTCCAGCA
* *
201405232 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCA
201405261 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
201405277 ATCTCGTCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 15 0.42
29 21 0.58
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:201407468 original size:24 final size:24
Alignment explanation
Indices: 201407417--201407559 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
201407407 GTTTTATCAT
*
201407417 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
201407442 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
201407466 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
201407489 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
201407513 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
201407537 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
201407560 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:201407496 original size:47 final size:48
Alignment explanation
Indices: 201407417--201407558 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
201407407 GTTTTATCAT
* *
201407417 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
201407466 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
201407513 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
201407559 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:201407518 original size:71 final size:72
Alignment explanation
Indices: 201407416--201407559 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
201407406 TGTTTTATCA
*
201407416 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
201407481 GCCCTTT
66 GCCCTTT
* * **
201407488 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
201407551 AGCCCTTT
65 AGCCCTTT
201407559 T
1 T
201407560 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Done.