Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 642 of 770
Found at i:201744613 original size:12 final size:13
Alignment explanation
Indices: 201744577--201744611 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
201744567 TTTCTTTTTC
*
201744577 TTATATTTTTATA
1 TTATGTTTTTATA
201744590 TTATGTTTTTATA
1 TTATGTTTTTATA
201744603 TTATGTTTT
1 TTATGTTTT
201744612 ATTATAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (13 bp):
TTATGTTTTTATA
Found at i:201746013 original size:29 final size:29
Alignment explanation
Indices: 201745971--201746030 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
201745961 ATGATTTTGA
201745971 GTTATGCCATTATTGATAATGTGAGCTTT
1 GTTATGCCATTATTGATAATGTGAGCTTT
201746000 GTTATGCCATTATTGATAATGTGAGCTTT
1 GTTATGCCATTATTGATAATGTGAGCTTT
201746029 GT
1 GT
201746031 GAAGTTTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.10, G:0.22, T:0.45
Consensus pattern (29 bp):
GTTATGCCATTATTGATAATGTGAGCTTT
Found at i:201749398 original size:40 final size:40
Alignment explanation
Indices: 201749302--201749519 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
201749292 TGGATGATAA
* *
201749302 CCGGGCTAAGTCCCGAATGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * *
201749343 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
201749383 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
201749423 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
201749463 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
201749502 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
201749520 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 101 0.64
41 22 0.14
42 4 0.03
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:201751200 original size:23 final size:23
Alignment explanation
Indices: 201751146--201751334 Score: 308
Period size: 23 Copynumber: 8.1 Consensus size: 23
201751136 CCTAGCCTCT
*
201751146 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
201751169 TTTTAATAACTGGGGCATGAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
201751193 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
201751216 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
201751238 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
201751262 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
201751286 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
201751309 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
201751332 TTT
1 TTT
201751335 TGCACTTCCT
Statistics
Matches: 158, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
22 12 0.08
23 89 0.56
24 57 0.36
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:201751277 original size:70 final size:71
Alignment explanation
Indices: 201751146--201751336 Score: 325
Period size: 70 Copynumber: 2.7 Consensus size: 71
201751136 CCTAGCCTCT
* * *
201751146 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATGAGCCC-TTTAATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAT
201751210 AAGCCC
66 AAGCCC
*
201751216 TTTAATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAT
201751280 AAGCCC
66 AAGCCC
201751286 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
201751337 CACTTCCTCC
Statistics
Matches: 114, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
69 33 0.29
70 69 0.61
71 12 0.11
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (71 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAT
AAGCCC
Found at i:201751303 original size:93 final size:94
Alignment explanation
Indices: 201751125--201751336 Score: 347
Period size: 93 Copynumber: 2.3 Consensus size: 94
201751115 GCTTTATCAT
* * *
201751125 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATGA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA
201751189 GCCCTTTAATAACTGGGGCATAAGCCCTTTA
64 GCCCTTTAATAACTGGGGCATAAGCCCTTTA
* *
201751220 ATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
201751284 CCTTTAATAACTGGGGCATAAGCCCTTTA
66 CCTTTAATAACTGGGGCATAAGCCCTTTA
201751313 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
201751337 CACTTCCTCC
Statistics
Matches: 110, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
93 82 0.75
94 22 0.20
95 6 0.05
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (94 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGC
CCTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:201751407 original size:9 final size:9
Alignment explanation
Indices: 201751393--201751449 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
201751383 ATCTCATGTG
201751393 CATATCATA
1 CATATCATA
*
201751402 CATATCATGTG
1 CATATCA--TA
201751413 CATATCATA
1 CATATCATA
* *
201751422 CATGTCATGTG
1 CATATCA--TA
201751433 CATATCATA
1 CATATCATA
201751442 CATATCAT
1 CATATCAT
201751450 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:201751409 original size:20 final size:20
Alignment explanation
Indices: 201751381--201751451 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
201751371 GCATTTATGA
*
201751381 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
201751401 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
201751421 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
201751441 ACATATCATGT
1 ACATATCATGT
201751452 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:201751416 original size:11 final size:11
Alignment explanation
Indices: 201751386--201751440 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
201751376 TATGAACATC
201751386 TCATGTGCATA
1 TCATGTGCATA
*
201751397 TCA--TACATA
1 TCATGTGCATA
201751406 TCATGTGCATA
1 TCATGTGCATA
* *
201751417 TCA--TACATG
1 TCATGTGCATA
201751426 TCATGTGCATA
1 TCATGTGCATA
201751437 TCAT
1 TCAT
201751441 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:201752768 original size:27 final size:27
Alignment explanation
Indices: 201752748--201753008 Score: 323
Period size: 27 Copynumber: 9.7 Consensus size: 27
201752738 AGGGTATTTT
*
201752748 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
201752775 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
201752802 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
201752829 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
201752856 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
201752883 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
201752910 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
201752937 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
201752964 AGTAATT-TGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
201752990 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
201753009 AGTACTTTGG
Statistics
Matches: 205, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
25 1 0.00
26 22 0.11
27 179 0.87
28 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:201752834 original size:81 final size:80
Alignment explanation
Indices: 201752749--201753008 Score: 364
Period size: 81 Copynumber: 3.2 Consensus size: 80
201752739 GGGTATTTTA
* * * *
201752749 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATT-TGTA
201752814 AATCGAGGGTAAAATG
65 AATCGAGGGTAAAATG
201752830 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATT-TGT
*
201752894 AAATCGGGGGTAAAATG
64 AAATCGAGGGTAAAATG
* * * *
201752911 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTGTA
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTGTA
*
201752975 AA-CTGAGGGTAAAACG
65 AATC-GAGGGTAAAATG
201752991 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
201753009 AGTACTTTGG
Statistics
Matches: 160, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
79 1 0.01
80 32 0.20
81 126 0.79
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (80 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTGTAA
ATCGAGGGTAAAATG
Found at i:201756175 original size:23 final size:24
Alignment explanation
Indices: 201756107--201756292 Score: 262
Period size: 24 Copynumber: 8.0 Consensus size: 24
201756097 GCTTTATCAT
* *
201756107 ATAACTGGAGGCCT-AGCCTTTTTA
1 ATAACTGG-GGCATAAGCCCTTTTA
*
201756131 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
201756155 ATAACTGGGGCAT-AGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
201756177 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
201756200 ATAACT-GGGC-TAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
201756222 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
201756246 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
201756268 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
201756292 A
1 A
201756293 CTGCACCTTC
Statistics
Matches: 149, Mismatches: 6, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.05
22 39 0.26
23 51 0.34
24 52 0.35
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:201756185 original size:46 final size:46
Alignment explanation
Indices: 201756127--201756292 Score: 266
Period size: 46 Copynumber: 3.6 Consensus size: 46
201756117 GCCTAGCCTT
*
201756127 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCAT-AGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACT-GGGCATAAGCCC
201756173 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGC-TAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCC
* *
201756217 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCC
201756264 TTTAATAACTGGGGCATAAGCCCTTTTAA
1 TTTAATAACTGGGGCATAAGCCCTTTTAA
201756293 CTGCACCTTC
Statistics
Matches: 111, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
43 1 0.01
44 9 0.08
45 32 0.29
46 62 0.56
47 7 0.06
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (46 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCC
Found at i:201756250 original size:91 final size:91
Alignment explanation
Indices: 201756121--201756289 Score: 286
Period size: 91 Copynumber: 1.9 Consensus size: 91
201756111 CTGGAGGCCT
*
201756121 AGCCTTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCAT-AGCCCTTTAATAACTGG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACT-GGGCATAAGCCCTTTAATAACTGG
201756185 GGCATAAGCCCTTTAATAACTGGGCTA
65 GGCATAAGCCCTTTAATAACTGGGCTA
* * *
201756212 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGCATAAGCCCTTTAATAACTGGG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGCATAAGCCCTTTAATAACTGGG
201756277 GCATAAGCCCTTT
66 GCATAAGCCCTTT
201756290 TAACTGCACC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
90 6 0.08
91 67 0.92
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (91 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGCATAAGCCCTTTAATAACTGGG
GCATAAGCCCTTTAATAACTGGGCTA
Found at i:201756367 original size:9 final size:9
Alignment explanation
Indices: 201756353--201756409 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
201756343 ATCTCATGTG
201756353 CATATCATA
1 CATATCATA
*
201756362 CATATCATGTG
1 CATATCA--TA
201756373 CATATCATA
1 CATATCATA
* *
201756382 CATGTCATGTG
1 CATATCA--TA
201756393 CATATCATA
1 CATATCATA
201756402 CATATCAT
1 CATATCAT
201756410 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:201756369 original size:20 final size:20
Alignment explanation
Indices: 201756341--201756411 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
201756331 GCATTTATGA
*
201756341 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
201756361 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
201756381 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
201756401 ACATATCATGT
1 ACATATCATGT
201756412 TTATCAAATC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:201756376 original size:11 final size:11
Alignment explanation
Indices: 201756346--201756400 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
201756336 TATGAACATC
201756346 TCATGTGCATA
1 TCATGTGCATA
*
201756357 TCA--TACATA
1 TCATGTGCATA
201756366 TCATGTGCATA
1 TCATGTGCATA
* *
201756377 TCA--TACATG
1 TCATGTGCATA
201756386 TCATGTGCATA
1 TCATGTGCATA
201756397 TCAT
1 TCAT
201756401 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:201757727 original size:27 final size:27
Alignment explanation
Indices: 201757697--201757958 Score: 316
Period size: 27 Copynumber: 9.7 Consensus size: 27
201757687 AGGGTATTTT
*
201757697 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
201757724 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
201757751 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
201757778 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
201757805 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
201757832 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
201757859 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
201757886 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
201757913 AGTAATTCTGTAAAACTGA-GGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
201757940 GGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAATCGAG
201757959 AGTACTTTGG
Statistics
Matches: 205, Mismatches: 24, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.01
27 198 0.97
28 4 0.02
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:201757790 original size:81 final size:80
Alignment explanation
Indices: 201757698--201757958 Score: 348
Period size: 81 Copynumber: 3.2 Consensus size: 80
201757688 GGGTATTTTA
* * *
201757698 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAAC-GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
201757763 AATCGAGGGTAAAATG
65 AATCGAGGGTAAAATG
*
201757779 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGT
1 GTAATTCTGTAAATCGAGGGTAAAACG-TAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGT
*
201757843 AAATCGGGGGTAAAATG
64 AAATCGAGGGTAAAATG
* * * *
201757860 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATCGA-GGGTAAAAC-GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
* *
201757924 AAAACTGA-GGTAAAACG
64 AAATC-GAGGGTAAAATG
201757941 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
201757959 AGTACTTTGG
Statistics
Matches: 158, Mismatches: 15, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
80 3 0.02
81 151 0.96
82 4 0.03
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (80 bp):
GTAATTCTGTAAATCGAGGGTAAAACGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAA
ATCGAGGGTAAAATG
Found at i:201761144 original size:40 final size:39
Alignment explanation
Indices: 201761093--201761382 Score: 332
Period size: 41 Copynumber: 7.1 Consensus size: 39
201761083 GCAAAAATTG
* *
201761093 TAAAACACAGAGCAATAGCGGCGTTTTAC-CAAAAGCGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGCTTT-CGTAAAA-CGCCGC
* *
201761134 TAAAAACAGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-CTTTCG-TAAAACGCCGC
201761175 TAAAAACAGAGCAATAGCGGCGCTTTCGGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTC-GTAAAACGCCGC
* *
201761215 T-AAAACTAGAGCATTAGCGGCGCTTTCGGTAAAACGCCCC
1 TAAAAAC-AGAGCAATAGCGGCGCTTTC-GTAAAACGCCGC
* * *
201761255 TAAAAACCGGAGCAATAGCGGCACTTTCGGTAAAACGCAGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTC-GTAAAACGCCGC
*
201761296 TAAAAACCGAAGCAATAGCGGCGCTTTCGGTAAAACGCCGC
1 TAAAAACAG-AGCAATAGCGGCGCTTTC-GTAAAACGCCGC
* *
201761337 TAAAAACCGGAGCATTAGCGGCGCTTTCGATAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTCG-TAAAACGCCGC
201761378 TAAAA
1 TAAAA
201761383 GTCATATAAC
Statistics
Matches: 223, Mismatches: 16, Indels: 20
0.86 0.06 0.08
Matches are distributed among these distances:
39 5 0.02
40 67 0.30
41 144 0.65
42 7 0.03
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (39 bp):
TAAAAACAGAGCAATAGCGGCGCTTTCGTAAAACGCCGC
Found at i:201761234 original size:81 final size:81
Alignment explanation
Indices: 201761094--201761382 Score: 370
Period size: 82 Copynumber: 3.5 Consensus size: 81
201761084 CAAAAATTGT
* *
201761094 AAAACACAGAGCAATAGCGGCGTTTTAC--CAAAAGCGCCGCTAAAAACAGAGCAATAGCGGCGT
1 AAAAC-CAGAGCAATAGCGGCGCTTT-CGGTAAAA-CGCCGCTAAAAACAGAGCAATAGCGGCG-
* * *
201761157 TTTTTGTTAAAACGCCGCTA
62 CTTTCGGTAAAACGCCGCTA
*
201761177 AAAA-CAGAGCAATAGCGGCGCTTTCGGTAAAACGCCGCT-AAAACTAGAGCATTAGCGGCGCTT
1 AAAACCAGAGCAATAGCGGCGCTTTCGGTAAAACGCCGCTAAAAAC-AGAGCAATAGCGGCGCTT
*
201761240 TCGGTAAAACGCCCCTA
65 TCGGTAAAACGCCGCTA
* * * *
201761257 AAAACCGGAGCAATAGCGGCACTTTCGGTAAAACGCAGCTAAAAACCGAAGCAATAGCGGCGCTT
1 AAAACCAGAGCAATAGCGGCGCTTTCGGTAAAACGCCGCTAAAAACAG-AGCAATAGCGGCGCTT
201761322 TCGGTAAAACGCCGCTA
65 TCGGTAAAACGCCGCTA
* * *
201761339 AAAACCGGAGCATTAGCGGCGCTTTCGATAAAACGCCGCTAAAA
1 AAAACCAGAGCAATAGCGGCGCTTTCGGTAAAACGCCGCTAAAA
201761383 GTCATATAAC
Statistics
Matches: 183, Mismatches: 17, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
80 26 0.14
81 73 0.40
82 80 0.44
83 4 0.02
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (81 bp):
AAAACCAGAGCAATAGCGGCGCTTTCGGTAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTT
CGGTAAAACGCCGCTA
Found at i:201761760 original size:14 final size:13
Alignment explanation
Indices: 201761743--201761786 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
201761733 ATTTTAAGAT
201761743 TTAGGGTTTATGGG
1 TTAGGGTTTA-GGG
*
201761757 TTAGGGGTTAAGGG
1 TTA-GGGTTTAGGG
201761771 TTAGGAGTTTAGGG
1 TTAGG-GTTTAGGG
201761785 TT
1 TT
201761787 TAGTTAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 2 0.08
14 18 0.69
15 6 0.23
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.39
Consensus pattern (13 bp):
TTAGGGTTTAGGG
Found at i:201762372 original size:19 final size:19
Alignment explanation
Indices: 201762337--201762399 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
201762327 TTAGATTTAA
201762337 AAAAACATTGATAAATAAAT
1 AAAAACATTGAT-AATAAAT
201762357 AAAAACATTGATAATAAAT
1 AAAAACATTGATAATAAAT
*
201762376 AAAAACATTGATAACAAAT
1 AAAAACATTGATAATAAAT
201762395 AAAAA
1 AAAAA
201762400 TGAAATACAA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
19 30 0.71
20 12 0.29
ACGTcount: A:0.67, C:0.06, G:0.05, T:0.22
Consensus pattern (19 bp):
AAAAACATTGATAATAAAT
Found at i:201762444 original size:15 final size:15
Alignment explanation
Indices: 201762424--201762475 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
201762414 AAAAATGAAA
201762424 TATGGGTTTATGGAT
1 TATGGGTTTATGGAT
*
201762439 TATGGGTTTAGGGAT
1 TATGGGTTTATGGAT
* *
201762454 TAT-GATTTATGGTT
1 TATGGGTTTATGGAT
*
201762468 TAAGGGTT
1 TATGGGTT
201762476 GGGTTTAAGG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
14 10 0.33
15 20 0.67
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (15 bp):
TATGGGTTTATGGAT
Found at i:201764804 original size:25 final size:26
Alignment explanation
Indices: 201764768--201764874 Score: 184
Period size: 25 Copynumber: 4.2 Consensus size: 26
201764758 TGATACAAAT
*
201764768 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
201764793 TGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
201764818 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
201764844 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
201764869 TGATAA
1 TGATAA
201764875 GAATTTCATG
Statistics
Matches: 80, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
25 69 0.86
26 11 0.14
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:201766384 original size:25 final size:26
Alignment explanation
Indices: 201766356--201766407 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
201766346 TTTACAGTTT
*
201766356 TACCCCTAGTGATAAATT-ACCGAAA
1 TACCCCTAGGGATAAATTGACCGAAA
* *
201766381 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
201766407 T
1 T
201766408 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:201770606 original size:26 final size:26
Alignment explanation
Indices: 201770569--201770652 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
201770559 TGATACAAAT
* *
201770569 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
201770595 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
201770621 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
201770647 TGATAA
1 TGATAA
201770653 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:201772160 original size:25 final size:26
Alignment explanation
Indices: 201772132--201772183 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
201772122 TTTACAGTTT
*
201772132 TACCCCTAGTGATAAATT-ACCGAAA
1 TACCCCTAGGGATAAATTGACCGAAA
* *
201772157 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
201772183 T
1 T
201772184 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:201776401 original size:51 final size:52
Alignment explanation
Indices: 201776346--201776454 Score: 184
Period size: 51 Copynumber: 2.1 Consensus size: 52
201776336 TGATACAAAT
201776346 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
* * *
201776397 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
201776449 TGATAA
1 TGATAA
201776455 GAATTTCATG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 31 0.57
52 23 0.43
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:201776415 original size:26 final size:26
Alignment explanation
Indices: 201776346--201776454 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
201776336 TGATACAAAT
*
201776346 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
201776372 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
201776397 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
201776423 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
201776449 TGATAA
1 TGATAA
201776455 GAATTTCATG
Statistics
Matches: 81, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
25 25 0.31
26 56 0.69
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:201782190 original size:26 final size:26
Alignment explanation
Indices: 201782154--201782263 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
201782144 TGATACAAAT
201782154 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
201782180 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
201782206 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
201782232 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
201782258 TGATAA
1 TGATAA
201782264 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:201787971 original size:26 final size:26
Alignment explanation
Indices: 201787935--201788044 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
201787925 TGATACAAAT
201787935 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
201787961 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
201787987 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
201788013 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
201788039 TGATAA
1 TGATAA
201788045 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:201791972 original size:37 final size:36
Alignment explanation
Indices: 201791930--201792004 Score: 141
Period size: 37 Copynumber: 2.1 Consensus size: 36
201791920 AATTAAAGCG
201791930 TTCAAAATTAACTCAAAACAAAAACAATGGAAGTAAC
1 TTCAAAATTAACTCAAAACAAAAACAATGG-AGTAAC
201791967 TTCAAAATTAACTCAAAACAAAAACAATGGAGTAAC
1 TTCAAAATTAACTCAAAACAAAAACAATGGAGTAAC
201792003 TT
1 TT
201792005 ACTTATAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 8 0.21
37 30 0.79
ACGTcount: A:0.55, C:0.16, G:0.08, T:0.21
Consensus pattern (36 bp):
TTCAAAATTAACTCAAAACAAAAACAATGGAGTAAC
Found at i:201794594 original size:40 final size:40
Alignment explanation
Indices: 201794557--201794739 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
201794547 GCTACTCGTT
*
201794557 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
201794597 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
201794637 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
201794676 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
201794717 CAAA-GCCTTC-GGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
201794740 ACATCATTCG
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
38 2 0.02
39 40 0.32
40 71 0.57
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:201794672 original size:79 final size:80
Alignment explanation
Indices: 201794559--201794740 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 80
201794549 TACTCGTTCA
* *
201794559 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
201794622 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
201794639 AATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
201794703 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
* *
201794718 AAAGCCTTCGGACTTAGCCCGGA
1 AATGCCTTCGGGCTTAGCCCGGA
201794741 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 69 0.78
80 17 0.19
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:201797887 original size:40 final size:39
Alignment explanation
Indices: 201797837--201797946 Score: 143
Period size: 40 Copynumber: 2.8 Consensus size: 39
201797827 ATAACCACGT
*
201797837 GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCACAATGCCTTCGGGTCTTAGCCCGGATAGAA-GCACTA
*
201797876 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTA
*
201797916 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
201797947 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
38 1 0.02
39 8 0.13
40 54 0.86
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTA
Found at i:201805875 original size:39 final size:39
Alignment explanation
Indices: 201805831--201805996 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 39
201805821 CGGAATACAA
201805831 CCGGATATAACCACGT-GCACAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAATGCCTTCGGGTCTTAGC
* * *
201805870 CCGGATAGAA-GACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCAC-AATGCCTTCGGGTCTTAGC
* *
201805909 CCGGATGTAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAGC
*** * * * *
201805949 CCGGATATAATTTCCAGCATAAGTGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAGC
201805989 CCGGATAT
1 CCGGATAT
201805997 GTGACATCCC
Statistics
Matches: 106, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.01
38 6 0.06
39 38 0.36
40 61 0.58
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:201805952 original size:40 final size:38
Alignment explanation
Indices: 201805831--201805954 Score: 153
Period size: 39 Copynumber: 3.2 Consensus size: 38
201805821 CGGAATACAA
*
201805831 CCGGATATAACCACGTGCACAATGCCTTCGGGTCTTAGC
1 CCGGATGTAACCAC-TGCACAATGCCTTCGGGTCTTAGC
*
201805870 CCGGATAG-AA-GACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGAT-GTAACCACT-GCAC-AATGCCTTCGGGTCTTAGC
*
201805909 CCGGATGTAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATGTAACCACT-GCACAA-TGCCTTCGGGTCTTAGC
201805949 CCGGAT
1 CCGGAT
201805955 ATAATTTCCA
Statistics
Matches: 74, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
37 1 0.01
38 7 0.09
39 37 0.50
40 29 0.39
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (38 bp):
CCGGATGTAACCACTGCACAATGCCTTCGGGTCTTAGC
Found at i:201807455 original size:29 final size:29
Alignment explanation
Indices: 201807422--201807553 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
201807412 GTGACGAGAT
*
201807422 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
201807451 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
201807480 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
201807509 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
201807538 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
201807554 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:201815265 original size:29 final size:29
Alignment explanation
Indices: 201815232--201815363 Score: 174
Period size: 29 Copynumber: 4.6 Consensus size: 29
201815222 GTGACGAGAT
*
201815232 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
201815261 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
201815290 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
201815319 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
201815348 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
201815364 AGCTCGAAGG
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:201823081 original size:29 final size:29
Alignment explanation
Indices: 201823048--201823179 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
201823038 GTGACGAGAT
*
201823048 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
201823077 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
201823106 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
201823135 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
201823164 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
201823180 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:201832181 original size:29 final size:29
Alignment explanation
Indices: 201832148--201832279 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
201832138 GTGACGAGAT
*
201832148 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
201832177 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
201832206 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
201832235 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
201832264 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
201832280 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:201834677 original size:23 final size:23
Alignment explanation
Indices: 201834651--201834696 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
201834641 TATCCCCATA
*
201834651 TGGAGTGTAG-GGTTGGATAGAGT
1 TGGAGTGTAGAGGCTGGAT-GAGT
201834674 TGGAGTGTAGAGGCTGGATGAGT
1 TGGAGTGTAGAGGCTGGATGAGT
201834697 AGAACTTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.22, C:0.02, G:0.48, T:0.28
Consensus pattern (23 bp):
TGGAGTGTAGAGGCTGGATGAGT
Found at i:201836762 original size:12 final size:12
Alignment explanation
Indices: 201836745--201836774 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
201836735 GGTAAATGGC
201836745 ATTGAATTGAGT
1 ATTGAATTGAGT
201836757 ATTGAATTGAGT
1 ATTGAATTGAGT
201836769 ATTGAA
1 ATTGAA
201836775 ATGGTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (12 bp):
ATTGAATTGAGT
Found at i:201837112 original size:12 final size:12
Alignment explanation
Indices: 201837095--201837123 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
201837085 ACAGGATTGG
201837095 CACGGCCTAGCA
1 CACGGCCTAGCA
201837107 CACGGCCTAGCA
1 CACGGCCTAGCA
201837119 CACGG
1 CACGG
201837124 GCGTGTGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.41, G:0.28, T:0.07
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:201841384 original size:34 final size:34
Alignment explanation
Indices: 201841328--201841396 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
201841318 AGTGATAGTC
* *
201841328 CAGTATCAGTTAGGGCCATAGCCCATTACAGTAT
1 CAGTATCAGATAGGGCCATAGCCCATTACACTAT
* *
201841362 CAGTATCAGAATA-GGCCTTAGCCCGTTACACTAT
1 CAGTATCAG-ATAGGGCCATAGCCCATTACACTAT
201841396 C
1 C
201841397 CGTAATAGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 28 0.93
35 2 0.07
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (34 bp):
CAGTATCAGATAGGGCCATAGCCCATTACACTAT
Found at i:201843235 original size:46 final size:46
Alignment explanation
Indices: 201843185--201843352 Score: 300
Period size: 46 Copynumber: 3.7 Consensus size: 46
201843175 TGAGCATCCA
*
201843185 AACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
201843231 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
* *
201843277 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
*
201843323 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
201843353 GGGGCGGGTT
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 118 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
Found at i:201843614 original size:19 final size:20
Alignment explanation
Indices: 201843577--201843614 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
201843567 ATAAGGTGGT
201843577 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
201843597 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
201843615 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:201845196 original size:17 final size:19
Alignment explanation
Indices: 201845154--201845197 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
201845144 ATGAAATTTT
*
201845154 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
201845173 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
201845191 AA-TATTA
1 AATTATTA
201845198 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:201847019 original size:28 final size:28
Alignment explanation
Indices: 201846987--201847055 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
201846977 GCGTAGATCA
201846987 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
201847015 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
201847043 CGATA-TACCCCTA
1 CGAAATTACCCCTA
201847056 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:201849464 original size:17 final size:19
Alignment explanation
Indices: 201849422--201849465 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
201849412 ATGAAATTTT
*
201849422 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
201849441 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
201849459 AA-TATTA
1 AATTATTA
201849466 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:201852000 original size:93 final size:93
Alignment explanation
Indices: 201851888--201852058 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
201851878 GCCCATAAGT
* *
201851888 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
201851953 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
201851981 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
201852046 CGAGTTCGGATGC
66 CGAGTTCGGATGC
201852059 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:201852074 original size:46 final size:46
Alignment explanation
Indices: 201851880--201852060 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
201851870 TGTAACCCGC
* * *
201851880 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
201851926 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
201851976 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
201852019 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
201852061 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:201854471 original size:30 final size:30
Alignment explanation
Indices: 201854427--201854515 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
201854417 CAAAGATAAC
*
201854427 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
201854456 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
201854486 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
201854516 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:201854475 original size:15 final size:14
Alignment explanation
Indices: 201854427--201854509 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
201854417 CAAAGATAAC
*
201854427 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
201854441 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
201854456 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
201854471 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
201854486 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
201854501 AAGAAACCC
1 AAGAAACCC
201854510 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:201854515 original size:15 final size:15
Alignment explanation
Indices: 201854438--201854515 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
201854428 AGAAAACCGA
201854438 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
201854453 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
201854467 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
201854482 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
201854498 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
201854513 ATA
1 ATA
201854516 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:201859774 original size:40 final size:40
Alignment explanation
Indices: 201859719--201859968 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
201859709 AACATTGGAA
201859719 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
201859759 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
201859799 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
201859839 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
201859879 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
201859918 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
201859959 CTATATCCGG
1 ATATATCCGG
201859969 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:201867946 original size:40 final size:40
Alignment explanation
Indices: 201867891--201868140 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
201867881 AACATTGGAA
201867891 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
201867931 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
201867971 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
201868011 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
201868051 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
201868090 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
201868131 CTATATCCGG
1 ATATATCCGG
201868141 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:201873205 original size:63 final size:64
Alignment explanation
Indices: 201873125--201873382 Score: 211
Period size: 68 Copynumber: 3.9 Consensus size: 64
201873115 ATATAGTTCG
* * *
201873125 GCTCTCTTGTAC-ACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGTA
1 GCTCTCTTGT-CTACATGGTGTACACTCAGTACCACCCATGTGACCTAGCCACATATATCCCGTA
* * * * *
201873188 GCTCTCTTGTCTACATGGTGTCCTTCAC-CTAGAACCACGCATGCGACCTAGCTACATATATCCC
1 GCTCTCTTGTCTACATGGTG---TACACTC-AGTACCACCCATGTGACCTAGCCACATATATCCC
201873252 GTA
62 GTA
* * *
201873255 GCTCTCTTGTCTACATGGTGTACACAT-AGTATCACCCATGTGACCTAGCTACATCATAATGTCT
1 GCTCTCTTGTCTACATGGTGTACAC-TCAGTACCACCCATGTGACCTAGC--CA-CAT-ATATCC
*
201873319 TGTA
61 CGTA
* * * ** *
201873323 GCTCTCTTGTAC-ACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACATACTATC
1 GCTCTCTTGT-CTACATGGTGTACACTCAGTACCACCCATGTGACCTAGCCACATA-TATC
201873383 TGTATCATCC
Statistics
Matches: 155, Mismatches: 25, Indels: 28
0.75 0.12 0.13
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 23 0.15
65 7 0.05
66 25 0.16
67 34 0.22
68 46 0.30
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACTCAGTACCACCCATGTGACCTAGCCACATATATCCCGTA
Found at i:201874074 original size:30 final size:30
Alignment explanation
Indices: 201874040--201874100 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
201874030 TCCTTAACTC
201874040 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
201874070 AAACTTTTGCATATTTACATTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
201874100 A
1 A
201874101 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:201881282 original size:58 final size:57
Alignment explanation
Indices: 201881209--201881319 Score: 134
Period size: 57 Copynumber: 1.9 Consensus size: 57
201881199 TGAATGTGAC
* * *
201881209 TGGGCCTAACGGGCCATA-GAAATGTGATTTGGCCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACAGGCCATATG-AATATGA-TTGGCCCTAATGGGCCAGATACAGGTGATT
* * * *
201881267 TGGGCCTAATAGGCCATATGAATATGATTGGGCTTAGTGGGCCAGATACAGGT
1 TGGGCCTAACAGGCCATATGAATATGATTGGCCCTAATGGGCCAGATACAGGT
201881320 ATGTGAAATT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
57 22 0.49
58 22 0.49
59 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (57 bp):
TGGGCCTAACAGGCCATATGAATATGATTGGCCCTAATGGGCCAGATACAGGTGATT
Found at i:201881294 original size:29 final size:28
Alignment explanation
Indices: 201881196--201881310 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 28
201881186 GTGAGCATGA
* *
201881196 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
201881224 ATA-GAAATGTGATTTGGCCCTAATGGGCC
1 ATATG-AATGTGA-TTGGGCCTAATGGGCC
* *
201881253 ATAT-ACAGGTGATTTGGGCCTAATAGGCC
1 ATATGA-ATGTGA-TTGGGCCTAATGGGCC
* * *
201881282 ATATGAATATGATTGGGCTTAGTGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
201881310 A
1 A
201881311 GATACAGGTA
Statistics
Matches: 71, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
27 1 0.01
28 25 0.35
29 44 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:201884090 original size:39 final size:40
Alignment explanation
Indices: 201883912--201884094 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
201883902 CCGCACCAAG
* * * * * * * *
201883912 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
201883952 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
201883992 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
201884032 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
201884071 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
201884095 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:201891697 original size:71 final size:71
Alignment explanation
Indices: 201891611--201891774 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
201891601 CGATTTGTCT
201891611 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
201891676 CTTTCA
66 CTTTCA
201891682 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
201891747 CTTTCA
66 CTTTCA
201891753 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
201891775 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:201891812 original size:71 final size:70
Alignment explanation
Indices: 201891611--201891808 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
201891601 CGATTTGTCT
* * * *
201891611 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
201891676 CTTTCA
65 CTTTCA
* * * *
201891682 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
201891747 CTTTCA
65 CTTTCA
* *
201891753 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
201891809 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:201899271 original size:71 final size:71
Alignment explanation
Indices: 201899185--201899348 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
201899175 CGATTTGTCT
201899185 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
201899250 CTTTCA
66 CTTTCA
201899256 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
201899321 CTTTCA
66 CTTTCA
201899327 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
201899349 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:201899386 original size:71 final size:70
Alignment explanation
Indices: 201899185--201899382 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
201899175 CGATTTGTCT
* * * *
201899185 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
201899250 CTTTCA
65 CTTTCA
* * * *
201899256 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
201899321 CTTTCA
65 CTTTCA
* *
201899327 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
201899383 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:201906613 original size:40 final size:40
Alignment explanation
Indices: 201906569--201906753 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
201906559 GCTACTCGTT
* * *
201906569 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
201906609 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
201906649 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
201906689 CAATTGCCTTC-GGATTTAGTCCGAATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCA
*
201906729 CAGA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
201906754 CATCATTCGA
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 27 0.21
40 97 0.77
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:201907466 original size:2 final size:2
Alignment explanation
Indices: 201907459--201907488 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
201907449 ATGTGCAAAC
201907459 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
201907489 GCAAGAGCCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:201913029 original size:29 final size:29
Alignment explanation
Indices: 201912971--201913064 Score: 109
Period size: 29 Copynumber: 3.3 Consensus size: 29
201912961 GTGAGCATGA
* * *
201912971 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
201912999 ATATAAATGTGATTTGGGCCTAATGGACC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
201913028 ATATACAGGTGGTTTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
201913057 ATATAAAT
1 ATATAAAT
201913065 ATAATTGGGT
Statistics
Matches: 54, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
28 11 0.20
29 43 0.80
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:201913093 original size:57 final size:58
Alignment explanation
Indices: 201912984--201913094 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 58
201912974 TGAATGTGAC
* * *
201912984 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGACCATATACAGGTGGTT
1 TGGGCCTAACGGGCCATATAAATATGAATTGGGCCTAATGGACCAGATACAGGTGGTT
* * ** *
201913042 TGGGCTTAATGGGCCATATAAATAT-AATTGGGTTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGAATTGGGCCTAATGGACCAGATACAGGT
201913095 ATGTGGATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 23 0.51
58 22 0.49
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGAATTGGGCCTAATGGACCAGATACAGGTGGTT
Found at i:201914107 original size:18 final size:19
Alignment explanation
Indices: 201914074--201914109 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
201914064 TAAGTGACAT
201914074 GTTCTTTTATTTTTAAGAC
1 GTTCTTTTATTTTTAAGAC
201914093 GTTCTTTTA-TTTTAAGA
1 GTTCTTTTATTTTTAAGA
201914110 AGGGTTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.22, C:0.08, G:0.11, T:0.58
Consensus pattern (19 bp):
GTTCTTTTATTTTTAAGAC
Found at i:201914816 original size:15 final size:15
Alignment explanation
Indices: 201914796--201914825 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
201914786 ATGAATAATC
201914796 TTTTTGTATGTATTA
1 TTTTTGTATGTATTA
201914811 TTTTTGTATGTATTA
1 TTTTTGTATGTATTA
201914826 CTATGTCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.13, T:0.67
Consensus pattern (15 bp):
TTTTTGTATGTATTA
Found at i:201918358 original size:124 final size:124
Alignment explanation
Indices: 201918136--201918360 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
201918126 GAATTATGTG
* * * ** * * *
201918136 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
201918201 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
201918260 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
201918325 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
201918361 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:201918482 original size:40 final size:41
Alignment explanation
Indices: 201918355--201918484 Score: 160
Period size: 40 Copynumber: 3.2 Consensus size: 41
201918345 ATGCTGGAAA
* *
201918355 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTA-GTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGACGTGG
* * **
201918395 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAC-TCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGACGTGG
*
201918435 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGACGTGG
201918475 TTATATCCGG
1 TTATATCCGG
201918485 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 5 0.07
40 70 0.93
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (41 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGACGTGG
Found at i:201924107 original size:40 final size:40
Alignment explanation
Indices: 201923999--201924208 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
201923989 CGGGATTTAA
* * * * *
201923999 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
201924039 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
201924079 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
201924119 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
201924159 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
201924199 CCGGATATAT
1 CCGGATATAT
201924209 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:201932230 original size:40 final size:40
Alignment explanation
Indices: 201932122--201932331 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
201932112 CGGGATTTAA
* * * * *
201932122 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
201932162 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
201932202 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
201932242 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
201932282 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
201932322 CCGGATATAT
1 CCGGATATAT
201932332 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:201941613 original size:40 final size:39
Alignment explanation
Indices: 201941509--201941675 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 39
201941499 CGGAATACAA
*
201941509 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CACTCGCACGAATGCCTTCGGGTCTTAGC
* *
201941549 CC-GATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTCGCACGAATGCCTTCGGGTCTTAGC
*
201941588 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTCGCACGAATGCCTTCGGGTCTTAGC
* *
201941628 CCGGATA-AAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA--CACTCGCACGAA-TGCCTTCGGGTCTTAGC
201941668 CCGGATAT
1 CCGGATAT
201941676 CATTCAATTG
Statistics
Matches: 112, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.01
39 38 0.34
40 72 0.64
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (39 bp):
CCGGATATAACACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:201944562 original size:40 final size:40
Alignment explanation
Indices: 201944468--201944612 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
201944458 TACTCGAATG
* *
201944468 ATATTCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
201944509 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
201944549 ATATCCGGGCTAAGTCCCGAAGGAATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
201944589 ATATCCGGGCCAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
201944613 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:201950628 original size:15 final size:15
Alignment explanation
Indices: 201950608--201950638 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
201950598 ACCATTCGTA
201950608 TCCTAGCTCGTGAAG
1 TCCTAGCTCGTGAAG
201950623 TCCTAGCTCGTGAAG
1 TCCTAGCTCGTGAAG
201950638 T
1 T
201950639 GAAGGAGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.29
Consensus pattern (15 bp):
TCCTAGCTCGTGAAG
Found at i:201951796 original size:2 final size:2
Alignment explanation
Indices: 201951791--201951816 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
201951781 TCTTGCACAC
201951791 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
201951817 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:201952619 original size:40 final size:40
Alignment explanation
Indices: 201952525--201952667 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
201952515 TACTCGAATG
*
201952525 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
201952566 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
201952606 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
201952646 ATATCCGGG-TAAG-ACCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
201952668 CTTGTCGAGT
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
38 8 0.09
39 5 0.05
40 49 0.54
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:201956466 original size:59 final size:58
Alignment explanation
Indices: 201956393--201956524 Score: 158
Period size: 59 Copynumber: 2.3 Consensus size: 58
201956383 ATTTAAGCCC
* * * * *
201956393 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCAT
* * **
201956452 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
201956510 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
201956525 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
58 26 0.41
59 36 0.57
60 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:201956482 original size:29 final size:29
Alignment explanation
Indices: 201956442--201956524 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
201956432 TGCCGTATTT
201956442 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
201956471 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
201956500 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
201956525 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:201957711 original size:19 final size:18
Alignment explanation
Indices: 201957674--201957732 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 18
201957664 AGAATGAACA
* *
201957674 CTTT-TTTTTTTTCTTTT
1 CTTTGTTTTTCTTCATTT
201957691 CTTTGTTTTTCTTCATATT
1 CTTTGTTTTTCTTCAT-TT
* *
201957710 CTCTTTTTTTTTTTCATTT
1 CT-TTGTTTTTCTTCATTT
201957729 CTTT
1 CTTT
201957733 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 4 0.11
18 11 0.31
19 8 0.23
20 12 0.34
ACGTcount: A:0.05, C:0.15, G:0.02, T:0.78
Consensus pattern (18 bp):
CTTTGTTTTTCTTCATTT
Found at i:201964390 original size:29 final size:29
Alignment explanation
Indices: 201964298--201964401 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
201964288 GATTTAAGCC
* *** * *
201964298 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** * *
201964327 CGCACACCCAGTGCCGTATTTTTTCCAGCA
1 CGCACACTTAGTGCCATA-TATTTCCAGCA
*
201964357 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
201964386 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
201964402 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
29 40 0.67
30 20 0.33
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:201967614 original size:22 final size:22
Alignment explanation
Indices: 201967589--201967667 Score: 79
Period size: 22 Copynumber: 3.6 Consensus size: 22
201967579 TAGCTCGTAT
* *
201967589 GAGCTTATTGTTTAGCTTAATA
1 GAGCTTACTGTTCAGCTTAATA
*
201967611 GAGCTTACTGTTCAGCTTGATA
1 GAGCTTACTGTTCAGCTTAATA
* *
201967633 GAGCTTACCT-TTCAGCTCATTA
1 GAGCTTA-CTGTTCAGCTTAATA
* *
201967655 AAGCTTATTGTTC
1 GAGCTTACTGTTC
201967668 CTCAGCTCAG
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
21 1 0.02
22 44 0.94
23 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTTAATA
Found at i:201973332 original size:34 final size:34
Alignment explanation
Indices: 201973284--201973348 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
201973274 AATTACATTT
*
201973284 CTGTTACTGTTACTGAATTGGGCTAAGGCCCACA
1 CTGTTACTGATACTGAATTGGGCTAAGGCCCACA
*
201973318 CTGTTACTGATACTGTATTGGGCTAAGGCCC
1 CTGTTACTGATACTGAATTGGGCTAAGGCCC
201973349 TAACTGATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.31
Consensus pattern (34 bp):
CTGTTACTGATACTGAATTGGGCTAAGGCCCACA
Found at i:201973360 original size:34 final size:34
Alignment explanation
Indices: 201973288--201973360 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 34
201973278 ACATTTCTGT
* *
201973288 TACTGTTACTGAATTGGGCTAAGGCCCACACTGT
1 TACTGATACTGAATTGGGCTAAGGCCCACACTGA
*
201973322 TACTGATACTGTATTGGGCTAAGGCCCTA-ACTGA
1 TACTGATACTGAATTGGGCTAAGGCCC-ACACTGA
201973356 TACTG
1 TACTG
201973361 GACTGTCACT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
34 34 0.97
35 1 0.03
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (34 bp):
TACTGATACTGAATTGGGCTAAGGCCCACACTGA
Found at i:201978590 original size:39 final size:40
Alignment explanation
Indices: 201978491--201978635 Score: 242
Period size: 39 Copynumber: 3.7 Consensus size: 40
201978481 TGAATGATAC
*
201978491 CCGGG-TAAGACCCGAAGGCATTTGTGTGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
201978530 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
201978570 CCGGG-TAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
201978608 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGTTAAGACCCGAAGGCATTTGTGC
201978636 TTGTGGTTAT
Statistics
Matches: 100, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
38 5 0.05
39 58 0.58
40 37 0.37
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:201978664 original size:78 final size:79
Alignment explanation
Indices: 201978491--201978655 Score: 260
Period size: 78 Copynumber: 2.1 Consensus size: 79
201978481 TGAATGATAC
* * *
201978491 CCGGGTAAGACCCGAAGGCATTTGTGTGAGTTGCTATATCCGGGTTAAGACCCGAAGGCATTTGT
1 CCGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGTTAAGACCCGAAGGCAATTGT
*
201978556 GCGAGTTGTTATAT
66 GCGAGTGGTTATAT
*
201978570 CCGGGTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-CCGGGTTAAGACCCGAAGGCAATTGT
1 CCGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGTTAAGACCCGAAGGCAATTGT
**
201978634 GCTTGTGGTTATAT
66 GCGAGTGGTTATAT
201978648 CCGGCTAA
1 CCGGCTAA
201978656 ATTCCGAAGA
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
78 43 0.54
79 37 0.46
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.27
Consensus pattern (79 bp):
CCGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGTTAAGACCCGAAGGCAATTGT
GCGAGTGGTTATAT
Found at i:201987740 original size:2 final size:2
Alignment explanation
Indices: 201987733--201987759 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
201987723 TATTTTAAAG
201987733 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
201987760 TGAGGTGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:201992360 original size:47 final size:47
Alignment explanation
Indices: 201992251--201992361 Score: 129
Period size: 47 Copynumber: 2.4 Consensus size: 47
201992241 CCGGGATAAG
* *
201992251 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAAAAAATCCGGAACTTTAACATAATAGTA
* * *
201992298 CACAAAGTACTTCATCGGAAAAAATCTGGAACTTT-A-ATAATAGTCGA
1 CACATAGTGCTTCATCGGAAAAAATCCGGAACTTTAACATAATAGT--A
201992345 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
201992362 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
45 7 0.13
46 2 0.04
47 45 0.83
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAAAAAATCCGGAACTTTAACATAATAGTA
Found at i:201994478 original size:30 final size:30
Alignment explanation
Indices: 201994442--201994499 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
201994432 CCGAGCCTAG
201994442 GGGCAAAAGTGTAAATATGCAAAAGTTTAT
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAT
* * * *
201994472 GGGCAAAATTGTAATTTTTCAAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
201994500 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.33
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAT
Found at i:201995272 original size:68 final size:67
Alignment explanation
Indices: 201995158--201995312 Score: 167
Period size: 68 Copynumber: 2.3 Consensus size: 67
201995148 GATGATACAG
* * * *
201995158 ATTATATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACAA
1 ATTATATGTAGCTAGGTCACATGGATGATACTGAGTGCACACCATGTAG-ACAAGAGAGCTACAA
201995222 GAC
65 GAC
* *
201995225 ATTATGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTAC-
1 ATTAT-ATGTAGCTAGGTCACATGGATGATACTGA-GTGCACACCATGTAGACAAGAGAGCTACA
**
201995288 -GGG
64 AGAC
*
201995291 A-TATATGTAGCTAGGTCGCATG
1 ATTATATGTAGCTAGGTCACATG
201995313 CATGGTTCCA
Statistics
Matches: 76, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
64 17 0.22
65 3 0.04
66 2 0.03
67 6 0.08
68 47 0.62
69 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (67 bp):
ATTATATGTAGCTAGGTCACATGGATGATACTGAGTGCACACCATGTAGACAAGAGAGCTACAAG
AC
Found at i:201996495 original size:2 final size:2
Alignment explanation
Indices: 201996488--201996518 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
201996478 TCATGACATG
201996488 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
201996519 GACTAGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:202003305 original size:40 final size:40
Alignment explanation
Indices: 202003246--202003376 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
202003236 CGGGACTTTA
* * *
202003246 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
202003286 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
202003326 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
202003366 CCCGGATATAA
1 CCCGGATATAA
202003377 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:202003409 original size:39 final size:40
Alignment explanation
Indices: 202003263--202003413 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
202003253 ATCACGATTT
* * * *
202003263 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
202003303 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
202003343 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
202003382 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
202003414 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 31 0.32
40 64 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:202010400 original size:40 final size:40
Alignment explanation
Indices: 202010341--202010471 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
202010331 CGGGACTTTA
* * *
202010341 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
202010381 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
202010421 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
202010461 CCCGGATATAA
1 CCCGGATATAA
202010472 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:202010504 original size:39 final size:40
Alignment explanation
Indices: 202010358--202010508 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
202010348 ATCACGATTT
* * * *
202010358 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
202010398 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
202010438 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
202010477 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
202010509 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 31 0.32
40 64 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:202016695 original size:41 final size:41
Alignment explanation
Indices: 202016650--202016767 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
202016640 TGAAAGATAA
202016650 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
202016691 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
202016721 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
202016762 ATGTAG
1 ATGTAG
202016768 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:202016706 original size:71 final size:71
Alignment explanation
Indices: 202016618--202016781 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
202016608 GAGATGTATC
202016618 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
202016683 AGGACA
66 AGGACA
202016689 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
202016754 AGGACA
66 AGGACA
202016760 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
202016782 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:202021948 original size:47 final size:47
Alignment explanation
Indices: 202021880--202022095 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
202021870 CCTGTATATA
* *
202021880 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
202021927 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
202021974 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
**
202022021 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * *
202022068 TATATGTGGTAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
202022096 CGAAATGTGT
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:202022160 original size:65 final size:65
Alignment explanation
Indices: 202022079--202022210 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
202022069 ATATGTGGTA
202022079 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
1 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
202022144 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
1 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
202022209 AG
1 AG
202022211 ATATGTATGA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.34, C:0.11, G:0.31, T:0.24
Consensus pattern (65 bp):
AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
Found at i:202022199 original size:32 final size:32
Alignment explanation
Indices: 202022098--202022199 Score: 93
Period size: 32 Copynumber: 3.2 Consensus size: 32
202022088 GGCTAATGCG
202022098 AAATGTGTATGAGATAGATATGTGGTAAAGCC
1 AAATGTGTATGAGATAGATATGTGGTAAAGCC
*** * * *
202022130 AAATG-GCTAATGTGAGGCCGA-ATG-GCTAATGCG
1 AAATGTG-T-A--TGAGATAGATATGTGGTAAAGCC
202022163 AAATGTGTATGAGATAGATATGTGGTAAAGCC
1 AAATGTGTATGAGATAGATATGTGGTAAAGCC
202022195 AAATG
1 AAATG
202022200 GCTAATGTGA
Statistics
Matches: 51, Mismatches: 12, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
30 6 0.12
31 4 0.08
32 18 0.35
33 13 0.25
34 4 0.08
35 6 0.12
ACGTcount: A:0.36, C:0.09, G:0.29, T:0.25
Consensus pattern (32 bp):
AAATGTGTATGAGATAGATATGTGGTAAAGCC
Found at i:202022232 original size:2 final size:2
Alignment explanation
Indices: 202022225--202022249 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
202022215 GTATGAGATG
202022225 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
202022250 TGTGGCCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:202025051 original size:40 final size:40
Alignment explanation
Indices: 202024510--202025032 Score: 902
Period size: 40 Copynumber: 13.1 Consensus size: 40
202024500 AGTTGTATAG
* * * *
202024510 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
202024550 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
202024590 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
202024630 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
202024670 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
202024710 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
202024750 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
202024790 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
202024830 CCGGACTAAATCCCGAAGAGCATTTGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
202024870 CCGGACTAAATCCCGGAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
202024910 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
202024950 CCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
202024990 CTGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
202025030 CCG
1 CCG
202025033 AGCTGGGTCC
Statistics
Matches: 460, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 460 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGACTAAATCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:202028572 original size:47 final size:47
Alignment explanation
Indices: 202028504--202028719 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
202028494 CCTGTATATA
* *
202028504 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
202028551 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
202028598 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
**
202028645 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
* * *
202028692 TATATGTGGTAAGGCCGAATGGCTAATG
1 TATGTGTGATAAGGCCGAATGGCCAATG
202028720 CGAAATGTGT
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG
Found at i:202028784 original size:65 final size:65
Alignment explanation
Indices: 202028703--202028834 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
202028693 ATATGTGGTA
202028703 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
1 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
202028768 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
1 AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
202028833 AG
1 AG
202028835 ATATGTATGA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.34, C:0.11, G:0.31, T:0.24
Consensus pattern (65 bp):
AGGCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGTGGTAAAGCCAAATGGCTAATGTG
Found at i:202028823 original size:32 final size:32
Alignment explanation
Indices: 202028722--202028823 Score: 93
Period size: 32 Copynumber: 3.2 Consensus size: 32
202028712 GGCTAATGCG
202028722 AAATGTGTATGAGATAGATATGTGGTAAAGCC
1 AAATGTGTATGAGATAGATATGTGGTAAAGCC
*** * * *
202028754 AAATG-GCTAATGTGAGGCCGA-ATG-GCTAATGCG
1 AAATGTG-T-A--TGAGATAGATATGTGGTAAAGCC
202028787 AAATGTGTATGAGATAGATATGTGGTAAAGCC
1 AAATGTGTATGAGATAGATATGTGGTAAAGCC
202028819 AAATG
1 AAATG
202028824 GCTAATGTGA
Statistics
Matches: 51, Mismatches: 12, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
30 6 0.12
31 4 0.08
32 18 0.35
33 13 0.25
34 4 0.08
35 6 0.12
ACGTcount: A:0.36, C:0.09, G:0.29, T:0.25
Consensus pattern (32 bp):
AAATGTGTATGAGATAGATATGTGGTAAAGCC
Found at i:202028856 original size:2 final size:2
Alignment explanation
Indices: 202028849--202028873 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
202028839 GTATGAGATG
202028849 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
202028874 TGTGGCCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:202030862 original size:21 final size:21
Alignment explanation
Indices: 202030836--202030875 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
202030826 ACTGACTTGT
202030836 ACCACACAGCCGACGACACGC
1 ACCACACAGCCGACGACACGC
* *
202030857 ACCACACGGCCGAGGACAC
1 ACCACACAGCCGACGACAC
202030876 ACCTGTGCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.45, G:0.23, T:0.00
Consensus pattern (21 bp):
ACCACACAGCCGACGACACGC
Found at i:202032117 original size:43 final size:42
Alignment explanation
Indices: 202031952--202032109 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
202031942 CATAAGCTTG
* * *
202031952 TACAATGCC-ATATCCTAGATATGGTCTTACATGTGAA-CACA
1 TACAATGCCAATATCCTAGACATGGTCTTACACGTAAATCA-A
* * * * *
202031993 TATCGATGCCACTGTCCTAGACAGGGTCTTACACG-AAATCGAT
1 TA-CAATGCCAATATCCTAGACATGGTCTTACACGTAAATC-AA
* * *
202032036 TAACGATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAA
1 T-ACAATGCCAATATCCTAGACATGGTCTTACACGTAA-ATCAA
202032080 TACAATGCCAATATCCTAGACATGGTCTTA
1 TACAATGCCAATATCCTAGACATGGTCTTA
202032110 AATGTAATCA
Statistics
Matches: 95, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.02
42 8 0.08
43 76 0.80
44 6 0.06
45 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (42 bp):
TACAATGCCAATATCCTAGACATGGTCTTACACGTAAATCAA
Found at i:202039549 original size:12 final size:12
Alignment explanation
Indices: 202039532--202039557 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
202039522 CCACACACGC
202039532 CCATGTGCTAGG
1 CCATGTGCTAGG
202039544 CCATGTGCTAGG
1 CCATGTGCTAGG
202039556 CC
1 CC
202039558 GTGCCAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.31, G:0.31, T:0.23
Consensus pattern (12 bp):
CCATGTGCTAGG
Found at i:202041721 original size:29 final size:29
Alignment explanation
Indices: 202041689--202041766 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
202041679 ATACCCTCCG
** *
202041689 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
202041718 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
202041747 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
202041767 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:202049416 original size:29 final size:29
Alignment explanation
Indices: 202049365--202049437 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
202049355 CCCTCGAGCT
* * * *
202049365 CGCACAC-CAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
202049393 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
202049422 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
202049438 ATCTCGTCAC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
28 6 0.16
29 32 0.84
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:202050552 original size:14 final size:15
Alignment explanation
Indices: 202050527--202050557 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
202050517 ATTTTTCCTT
202050527 TCTTTTTCCCTCTAC
1 TCTTTTTCCCTCTAC
202050542 TCTTTTT-CCTCTAC
1 TCTTTTTCCCTCTAC
202050556 TC
1 TC
202050558 ACGGCAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTTCCCTCTAC
Found at i:202054381 original size:40 final size:40
Alignment explanation
Indices: 202054326--202054535 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
202054316 AACATTGGAA
202054326 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
202054366 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
202054406 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
202054446 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
202054485 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
202054526 CTATATCCGG
1 ATATATCCGG
202054536 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:202062515 original size:40 final size:40
Alignment explanation
Indices: 202062460--202062669 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
202062450 AACATTGGAA
202062460 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
202062500 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
202062540 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
202062580 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
202062619 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
202062660 CTATATCCGG
1 ATATATCCGG
202062670 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:202064339 original size:40 final size:40
Alignment explanation
Indices: 202064284--202064507 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
202064274 TATTCGGATG
202064284 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
202064324 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
202064367 ATACCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
202064407 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
202064447 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
202064487 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
202064508 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 13 0.08
40 112 0.70
41 1 0.01
43 35 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Done.