Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 643 of 770
Found at i:202064427 original size:83 final size:80
Alignment explanation
Indices: 202064288--202064507 Score: 284
Period size: 83 Copynumber: 2.7 Consensus size: 80
202064278 CGGATGATAT
* **
202064288 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
202064353 TGCGAGTAGTTG-CCATAC
66 TGC---TAG-TGACCATAC
* *
202064371 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
* *
202064436 TGCTAGTGACTATAT
66 TGCTAGTGACCATAC
* * *
202064451 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
202064508 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.13
80 43 0.35
81 2 0.02
83 63 0.51
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACCATAC
Found at i:202071360 original size:29 final size:29
Alignment explanation
Indices: 202071219--202071348 Score: 165
Period size: 29 Copynumber: 4.5 Consensus size: 29
202071209 GACAAGATTG
* * * *
202071219 GCACTAAGTGTGCGGGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* * *
202071249 GCACTAAGTGTGCGAGTTTG--ATTCTATA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
202071277 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
202071306 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
202071335 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
202071349 GATTCACTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.23
29 50 0.56
30 15 0.17
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:202074591 original size:29 final size:29
Alignment explanation
Indices: 202074559--202074694 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
202074549 ATACCCTTCG
** * *
202074559 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
202074588 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
202074617 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
202074646 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
202074675 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
202074695 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:202074686 original size:58 final size:58
Alignment explanation
Indices: 202074534--202074693 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
202074524 AATTTAAGCC
* *** * * ** * *
202074534 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
202074592 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
202074650 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
202074694 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:202075527 original size:142 final size:140
Alignment explanation
Indices: 202075338--202075630 Score: 543
Period size: 142 Copynumber: 2.1 Consensus size: 140
202075328 AAATTCTATA
202075338 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
202075403 TGTTAAACATTC-AACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TG-TAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
202075467 GAAGACAACAT
130 GAAAACAACAT
202075478 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
202075543 TTTGTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAA
64 TTTGTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAA
202075608 GGAAAACAACAT
129 GGAAAACAACAT
202075620 GCATGGCCGAA
1 GCATGGCCGAA
202075631 ATTTAACTCA
Statistics
Matches: 149, Mismatches: 1, Indels: 4
0.97 0.01 0.03
Matches are distributed among these distances:
140 19 0.13
141 9 0.06
142 121 0.81
ACGTcount: A:0.40, C:0.29, G:0.10, T:0.21
Consensus pattern (140 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTAAACATTCAAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAGG
AAAACAACAT
Found at i:202082472 original size:29 final size:29
Alignment explanation
Indices: 202082440--202082574 Score: 148
Period size: 29 Copynumber: 4.7 Consensus size: 29
202082430 ATACCCTTCG
** * *
202082440 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
202082469 AGCTTGCACACATAGTGTCAT-TTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
202082497 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
202082526 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
202082555 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
202082575 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
28 23 0.25
29 69 0.75
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:202082525 original size:57 final size:58
Alignment explanation
Indices: 202082415--202082573 Score: 167
Period size: 57 Copynumber: 2.8 Consensus size: 58
202082405 AATTTAAGCC
* *** * * ** * *
202082415 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
202082473 TGCACACATAGTGTCAT-TTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
202082530 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
202082574 AATCTCGTCA
Statistics
Matches: 81, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
57 43 0.53
58 38 0.47
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:202088414 original size:28 final size:28
Alignment explanation
Indices: 202088349--202088449 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
202088339 ATAGTGAATC
*
202088349 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
202088378 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
202088406 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
202088436 CGCACACTTAGTGC
1 CGCACACTTAGTGC
202088450 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:202097788 original size:29 final size:28
Alignment explanation
Indices: 202097755--202097857 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
202097745 GGGACGAGAT
* *
202097755 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
202097784 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
202097813 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
202097842 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
202097858 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:202105022 original size:39 final size:39
Alignment explanation
Indices: 202104923--202105113 Score: 154
Period size: 40 Copynumber: 4.8 Consensus size: 39
202104913 CGAATGATGT
* * * * *
202104923 CCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AA
* * *
202104963 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
202105002 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
202105041 CCCGGGTTAAGTCCCGAAGGCATTCGTGCTAGTCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
202105082 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
202105114 CGTTATATCC
Statistics
Matches: 121, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:202105059 original size:79 final size:82
Alignment explanation
Indices: 202104922--202105106 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
202104912 TCGAATGATG
* * * *
202104922 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
202104986 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
202105002 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
* *
202105064 TCGTGCTAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
202105082 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
202105107 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 33 0.37
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:202106539 original size:21 final size:21
Alignment explanation
Indices: 202106513--202106557 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
202106503 CTAGTCAAGG
202106513 GAAGTCCATTGATCCATCTCA
1 GAAGTCCATTGATCCATCTCA
*
202106534 GAAGTCGATTGATCCATCTCA
1 GAAGTCCATTGATCCATCTCA
202106555 GAA
1 GAA
202106558 ACCAGAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (21 bp):
GAAGTCCATTGATCCATCTCA
Found at i:202108841 original size:40 final size:40
Alignment explanation
Indices: 202108774--202108918 Score: 134
Period size: 40 Copynumber: 3.6 Consensus size: 40
202108764 AAATTGAATG
* * * *
202108774 ATATCCGGGCTAAG-CACCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGAC-CCGAAGGCAATTGTGCTGGTAATT
* * ***
202108814 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
202108854 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
202108894 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
202108919 TTCGTGCACA
Statistics
Matches: 84, Mismatches: 17, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 3 0.04
40 80 0.95
41 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:202108939 original size:40 final size:40
Alignment explanation
Indices: 202108812--202108941 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
202108802 ATGCTGGAAA
* *
202108812 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
202108852 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
202108892 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
202108932 TTATATCCGG
1 TTATATCCGG
202108942 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:202117570 original size:39 final size:39
Alignment explanation
Indices: 202117466--202117572 Score: 130
Period size: 38 Copynumber: 2.8 Consensus size: 39
202117456 ATAATCACGT
* *
202117466 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TAGAATCTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAATCTA
*
202117504 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCA-CTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAG-AATCTA
* *
202117544 GCAC-ATTGCCTTCGGGTCTTAACCCGGAT
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT
202117573 ATAATTTCCA
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
38 28 0.46
39 23 0.38
40 9 0.15
41 1 0.02
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAATCTA
Found at i:202124687 original size:40 final size:40
Alignment explanation
Indices: 202124642--202124772 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
202124632 CGGAATATAA
202124642 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
202124682 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
202124722 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
202124762 CCGGATATAAT
1 CCGGATATAAT
202124773 TTCCAGCATA
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:202124786 original size:40 final size:40
Alignment explanation
Indices: 202124658--202124809 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
202124648 ATAATCACGT
* *
202124658 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATC-CA
* ** *
202124698 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCA-CTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATA-ATATCCA
* *
202124738 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATCCA
* * *
202124778 GCATAATTGTCTTCAGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTC-GGGTCTTAGCCCGGATAT
202124810 CATTCCATTT
Statistics
Matches: 91, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
39 2 0.02
40 83 0.91
41 6 0.07
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATATCCA
Found at i:202127298 original size:32 final size:32
Alignment explanation
Indices: 202127262--202127356 Score: 127
Period size: 32 Copynumber: 3.0 Consensus size: 32
202127252 CAATTGAATC
* *
202127262 TTCGTACATACATGTACCATATTGTACTAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
202127294 TTCGTACATACCTGTACCATATTGTACCAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
* * * * *
202127326 TCCGTAGATACCTGTATCATCTCGTACCAAT
1 TTCGTACATACCTGTACCATATTGTACCAAT
202127357 CTCATACTCA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (32 bp):
TTCGTACATACCTGTACCATATTGTACCAATT
Found at i:202127465 original size:28 final size:28
Alignment explanation
Indices: 202127434--202127529 Score: 111
Period size: 28 Copynumber: 3.4 Consensus size: 28
202127424 CCTATACCTT
* *
202127434 GCACACTAAGTGTCGTTTTGGATGTTTC
1 GCACACTAAGTGTCATTCTGGATGTTTC
* * * **
202127462 GCACACTAAGTGTCATCCTCGTTACTTC
1 GCACACTAAGTGTCATTCTGGATGTTTC
* *
202127490 GCACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGTCATTCTGGATGTTTC
202127518 GCACACTAAGTG
1 GCACACTAAGTG
202127530 CCATCCCCGA
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTGGATGTTTC
Found at i:202127494 original size:56 final size:56
Alignment explanation
Indices: 202127399--202127560 Score: 184
Period size: 56 Copynumber: 2.9 Consensus size: 56
202127389 TGAATATTCA
* ** * * * *
202127399 ATGTATCGCACA-TTAGATGCCATATCCTATACCTT-GCACACTAAGTGTCGTTTTGG
1 ATGTATCGCACACTAAG-TGCCATCCCCGATA-CTTCGCACACTAAGTGCCATTCTGG
* * * *
202127455 ATGTTTCGCACACTAAGTGTCATCCTCGTTACTTCGCACACTAAGTGCCATTCTGG
1 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCATTCTGG
*
202127511 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACATTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCA
202127561 CATATAATTA
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
55 3 0.03
56 82 0.93
57 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (56 bp):
ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCATTCTGG
Found at i:202127547 original size:28 final size:28
Alignment explanation
Indices: 202127459--202127560 Score: 125
Period size: 28 Copynumber: 3.6 Consensus size: 28
202127449 TTTTGGATGT
* *
202127459 TTCGCACACTAAGTGTCATCCTCGTTAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
* * *
202127487 TTCGCACACTAAGTGCCATTCTGGAT-G
1 TTCGCACACTAAGTGCCATCCTCGATAC
*
202127514 TATCGCACACTAAGTGCCATCCCCGATAC
1 T-TCGCACACTAAGTGCCATCCTCGATAC
*
202127543 TTCGCACATTAAGTGCCA
1 TTCGCACACTAAGTGCCA
202127561 CATATAATTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
27 1 0.02
28 60 0.97
29 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:202129335 original size:2 final size:2
Alignment explanation
Indices: 202129328--202129354 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
202129318 AATAATCATA
202129328 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
202129355 GGGAAAGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:202133775 original size:23 final size:23
Alignment explanation
Indices: 202133721--202133768 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
202133711 TTATTGTTAG
202133721 CATAATATTGCTTGAACTGTTGT
1 CATAATATTGCTTGAACTGTTGT
202133744 CATAATATTGCTTGAACTGTTGT
1 CATAATATTGCTTGAACTGTTGT
202133767 CA
1 CA
202133769 ATATATTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.42
Consensus pattern (23 bp):
CATAATATTGCTTGAACTGTTGT
Found at i:202134428 original size:18 final size:18
Alignment explanation
Indices: 202134405--202134440 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
202134395 AAAGTAAGCC
202134405 ATGTTCCAAAAAATCATT
1 ATGTTCCAAAAAATCATT
202134423 ATGTTCCAAAAAATCATT
1 ATGTTCCAAAAAATCATT
202134441 TTTCAGAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (18 bp):
ATGTTCCAAAAAATCATT
Found at i:202137782 original size:21 final size:20
Alignment explanation
Indices: 202137758--202137797 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
202137748 CATGTATCTT
202137758 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
202137779 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
202137798 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:202137805 original size:20 final size:21
Alignment explanation
Indices: 202137763--202137805 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
202137753 ATCTTAATGA
*
202137763 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
202137784 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
202137804 TT
1 TT
202137806 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:202138331 original size:41 final size:42
Alignment explanation
Indices: 202138286--202138475 Score: 144
Period size: 41 Copynumber: 4.5 Consensus size: 42
202138276 ATTTCAGATA
202138286 TATATATATGGCACTTA-TGTGTGATTCGAGATAGCTTCGGC
1 TATATATATGGCACTTAGTGTGTGATTCGAGATAGCTTCGGC
* * * *
202138327 TATATATATATATGGCACTTAGTGTGCGGTTCGAAATAGCTTCAGC
1 ----TATATATATGGCACTTAGTGTGTGATTCGAGATAGCTTCGGC
* **
202138373 TAT-T-TGTGGCACTTAGTGTGTGAGACTGAGATAGCTTCGGC
1 TATATATATGGCACTTAGTGTGTGATTC-GAGATAGCTTCGGC
* * *
202138414 TATGA-A-A-GGCACTTAGTGTGCGAGATT-AAAATAGCTTCGGC
1 TAT-ATATATGGCACTTAGTGT--GTGATTCGAGATAGCTTCGGC
* *
202138455 TATGT-TTTGGCACTTAGTGTG
1 TATATATATGGCACTTAGTGTG
202138476 CAAGAATTTG
Statistics
Matches: 116, Mismatches: 19, Indels: 25
0.73 0.12 0.16
Matches are distributed among these distances:
40 18 0.16
41 43 0.37
42 15 0.13
43 3 0.03
45 17 0.15
46 20 0.17
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (42 bp):
TATATATATGGCACTTAGTGTGTGATTCGAGATAGCTTCGGC
Found at i:202138346 original size:45 final size:46
Alignment explanation
Indices: 202138283--202138375 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
202138273 GACATTTCAG
* * *
202138283 ATATATATATATGGCACTTA-TGTGTGATTCGAGATAGCTTCGGCT
1 ATATATATATATGGCACTTAGTGTGCGATTCGAAATAGCTTCAGCT
*
202138328 ATATATATATATGGCACTTAGTGTGCGGTTCGAAATAGCTTCAGCT
1 ATATATATATATGGCACTTAGTGTGCGATTCGAAATAGCTTCAGCT
202138374 AT
1 AT
202138376 TTGTGGCACT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 20 0.47
46 23 0.53
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.37
Consensus pattern (46 bp):
ATATATATATATGGCACTTAGTGTGCGATTCGAAATAGCTTCAGCT
Found at i:202142946 original size:19 final size:19
Alignment explanation
Indices: 202142919--202142972 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
202142909 TTAAAAAAGG
*
202142919 AATTGAAATAAATAAGA-GA
1 AATTAAAATAAA-AAGATGA
*
202142938 AATTAAAATAAAAAAATGA
1 AATTAAAATAAAAAGATGA
*
202142957 AATAAAAATAAAAAGA
1 AATTAAAATAAAAAGA
202142973 ATTTTCAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 3 0.10
19 27 0.90
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (19 bp):
AATTAAAATAAAAAGATGA
Found at i:202149044 original size:30 final size:30
Alignment explanation
Indices: 202149000--202149088 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
202148990 CAAAGATAAC
202149000 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
202149029 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
202149059 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
202149089 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:202149048 original size:15 final size:15
Alignment explanation
Indices: 202149000--202149079 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
202148990 CAAAGATAAC
*
202149000 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
202149014 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
202149029 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
202149044 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
202149059 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
202149074 AAGAAA
1 AAGAAA
202149080 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:202149088 original size:15 final size:15
Alignment explanation
Indices: 202149011--202149088 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
202149001 AGAAAACCGA
202149011 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
202149026 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
202149040 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
202149055 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
202149071 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
202149086 ATA
1 ATA
202149089 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:202152091 original size:46 final size:46
Alignment explanation
Indices: 202152024--202152196 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
202152014 TGTAACCCGC
*
202152024 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
202152070 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
202152120 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACG--CGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
202152161 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
202152197 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 2 0.02
44 29 0.26
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:202152189 original size:91 final size:92
Alignment explanation
Indices: 202152032--202152201 Score: 306
Period size: 91 Copynumber: 1.8 Consensus size: 92
202152022 GCCCATAAGT
*
202152032 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-TCGCATCCATAAGTGAACTCGGACTCAACTCAA
202152097 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
202152125 GAACTCGGACTCAACTCAACGAGTTCGGACG-CGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
202152189 GAGTTCGGATGCC
66 GAGTTCGGATGCC
202152202 CAAATATCCA
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 46 0.61
93 29 0.39
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:202154617 original size:30 final size:30
Alignment explanation
Indices: 202154573--202154661 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
202154563 CAAAGATAAC
202154573 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
202154602 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
202154632 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
202154662 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:202154621 original size:15 final size:15
Alignment explanation
Indices: 202154573--202154652 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
202154563 CAAAGATAAC
*
202154573 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
202154587 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
202154602 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
202154617 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
202154632 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
202154647 AAGAAA
1 AAGAAA
202154653 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:202154661 original size:15 final size:15
Alignment explanation
Indices: 202154584--202154661 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
202154574 AGAAAACCGA
202154584 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
202154599 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
202154613 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
202154628 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
202154644 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
202154659 ATA
1 ATA
202154662 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:202157717 original size:93 final size:93
Alignment explanation
Indices: 202157605--202157776 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
202157595 GCCCATAAGT
* *
202157605 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
202157670 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
202157698 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
202157763 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
202157777 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:202157772 original size:46 final size:46
Alignment explanation
Indices: 202157597--202157772 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
202157587 TGTAACCCGC
* * *
202157597 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
202157643 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
202157693 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
202157736 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
202157773 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:202163139 original size:3 final size:3
Alignment explanation
Indices: 202163133--202163176 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
202163123 AAATGATGAA
202163133 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
202163177 CGCATATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:202165856 original size:37 final size:36
Alignment explanation
Indices: 202165806--202165892 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
202165796 TACGAAGTCT
202165806 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
202165842 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
202165879 TCACCCGGAACATA
1 T-ACCCGG-ACATA
202165893 TTTCTAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:202166028 original size:49 final size:49
Alignment explanation
Indices: 202165961--202166158 Score: 369
Period size: 49 Copynumber: 4.0 Consensus size: 49
202165951 TTTACCACAT
* *
202165961 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
202166010 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
202166059 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
202166108 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
202166157 AT
1 AT
202166159 GTGACATCCC
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 146 1.00
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.33
Consensus pattern (49 bp):
ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:202167889 original size:29 final size:29
Alignment explanation
Indices: 202167857--202167958 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
202167847 GTGACGAGAT
* *
202167857 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
202167886 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* *
202167915 TGGCACTATGTGTGCGGGCTT-AAATCA-A
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
202167943 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
202167959 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
28 18 0.30
29 43 0.70
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:202174271 original size:17 final size:19
Alignment explanation
Indices: 202174249--202174286 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
202174239 AAGGGAGAAT
202174249 AAAG-AAATG-GAAAAAAA
1 AAAGAAAATGAGAAAAAAA
202174266 AAAGAAAATGATGAAAAAAA
1 AAAGAAAATGA-GAAAAAAA
202174286 A
1 A
202174287 TGTGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 5 0.28
20 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAGAAAATGAGAAAAAAA
Found at i:202175624 original size:29 final size:29
Alignment explanation
Indices: 202175592--202175694 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
202175582 GTGACGAGAT
* *
202175592 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
202175621 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
202175650 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
202175679 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
202175695 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:202177288 original size:48 final size:49
Alignment explanation
Indices: 202177170--202177326 Score: 298
Period size: 49 Copynumber: 3.2 Consensus size: 49
202177160 GGGGTGTTAC
202177170 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
*
202177219 ATCACATATATATACAGTTTCACATTCATCACATCGGCCATTA-GCCTT
1 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
202177267 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
202177316 ATCACATATAT
1 ATCACATATAT
202177327 TATTATGTAC
Statistics
Matches: 105, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
48 47 0.45
49 58 0.55
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (49 bp):
ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:202183102 original size:40 final size:40
Alignment explanation
Indices: 202183043--202183250 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
202183033 CAATTGAATG
* * * *
202183043 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
202183083 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
202183123 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
202183163 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
202183203 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
202183243 ATATCCGG
1 ATATCCGG
202183251 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:202183181 original size:80 final size:80
Alignment explanation
Indices: 202183044--202183250 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
202183034 AATTGAATGA
* * ** * * *
202183044 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
202183109 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
202183122 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
202183187 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
202183204 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
202183251 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:202191950 original size:40 final size:40
Alignment explanation
Indices: 202191842--202192051 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
202191832 CGGGATTTAA
* * * * *
202191842 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
202191882 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
202191922 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
202191962 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
202192002 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
202192042 CCGGATATAT
1 CCGGATATAT
202192052 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:202200085 original size:40 final size:40
Alignment explanation
Indices: 202199977--202200186 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
202199967 CGGGATTTAA
* * * * *
202199977 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
202200017 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
202200057 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
202200097 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
202200137 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
202200177 CCGGATATAT
1 CCGGATATAT
202200187 TCCAATGTTC
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:202202899 original size:40 final size:40
Alignment explanation
Indices: 202202798--202202982 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
202202788 TATTCGAATG
* * * *
202202798 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AGTGACT
* * * *
202202839 ATATCCGGACTAAGATCCGAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
202202879 ATATTCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
*
202202919 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
202202958 CATATCCGGGCTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
202202983 CTTGTGCGAG
Statistics
Matches: 119, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 92 0.77
41 26 0.22
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:202211046 original size:40 final size:40
Alignment explanation
Indices: 202210945--202211129 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
202210935 TATTCGAATG
* * * * *
202210945 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AGTTACT
* *
202210986 ATATCCGGGCTAAGATCCGAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTTACT
* * * **
202211026 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTTACT
*
202211066 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTTACT
202211105 CATATCCGGGCTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
202211130 CTTGTGTGAG
Statistics
Matches: 122, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 94 0.77
41 27 0.22
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTTACT
Found at i:202211088 original size:80 final size:81
Alignment explanation
Indices: 202210945--202211129 Score: 268
Period size: 80 Copynumber: 2.3 Consensus size: 81
202210935 TATTCGAATG
* * * *
202210945 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACTATATCCGGGCTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGATCCGAAGGC
202211010 ATTTATGCGAGTTA-C
66 ATTTATGCGAGTTATC
* *
202211025 TATATCCGGGCCAAAACCCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAG-TCCCGAAG
1 -ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGAT-CCGAAG
*
202211088 GCATTTATGCTAGTTATC
64 GCATTTATGCGAGTTATC
202211106 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
202211130 CTTGTGTGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
79 1 0.01
80 63 0.68
81 29 0.31
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGATCCGAAGGC
ATTTATGCGAGTTATC
Found at i:202215985 original size:39 final size:39
Alignment explanation
Indices: 202215942--202216020 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
202215932 TCGTTAAACT
202215942 TTTGCAATTCTCAGTCTTTCATTCATAGCACATAAACAA
1 TTTGCAATTCTCAGTCTTTCATTCATAGCACATAAACAA
202215981 TTTGCAATTCTCAGTCTTTCATTCATAGCACATAAACAA
1 TTTGCAATTCTCAGTCTTTCATTCATAGCACATAAACAA
202216020 T
1 T
202216021 CATTCTTAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.37
Consensus pattern (39 bp):
TTTGCAATTCTCAGTCTTTCATTCATAGCACATAAACAA
Found at i:202222957 original size:206 final size:205
Alignment explanation
Indices: 202222603--202223150 Score: 898
Period size: 206 Copynumber: 2.7 Consensus size: 205
202222593 AGCTGAAACA
* *
202222603 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ACATAGCTGATTTGGC
* * * *
202222668 TTTCACGTGCTTACGATGAGGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAGA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
*
202222733 TCGAAGTTTGGCGTCTCCATATTTGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGAT
130 TCGAAGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGAT
202222798 TAGACTGAAGC
195 TAGACTGAAGC
*
202222809 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTGATTTAGC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAA-CATAGCTGATTTGGC
* *
202222874 TTTCACGTGCTTACGCTGAAACAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* *
202222939 TCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACTTTCAGATGAT
130 TCGAAGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGAT
*
202223004 TAGATTGAAGC
195 TAGACTGAAGC
* * * * *
202223015 AGATCAAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGT
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ACATAGCTGATTTGGC
*
202223080 TTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
202223145 TCGAAG
130 TCGAAG
202223151 AAGCAGATTT
Statistics
Matches: 318, Mismatches: 22, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
205 1 0.00
206 316 0.99
207 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (205 bp):
AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAACATAGCTGATTTGGCT
TTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
CGAAGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGATT
AGACTGAAGC
Found at i:202224836 original size:14 final size:14
Alignment explanation
Indices: 202224781--202224842 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 14
202224771 ATCCATTATT
*
202224781 TTTTATTGTCATATA
1 TTTTATT-TTATATA
* *
202224796 TTTTACTTATAAATTA
1 TTTTA-TTTTATA-TA
* *
202224812 TATTATATTATATA
1 TTTTATTTTATATA
202224826 TTTTATTTTATATA
1 TTTTATTTTATATA
202224840 TTT
1 TTT
202224843 CTTATATATT
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
14 17 0.47
15 11 0.31
16 8 0.22
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (14 bp):
TTTTATTTTATATA
Found at i:202224872 original size:20 final size:21
Alignment explanation
Indices: 202224849--202224888 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
202224839 ATTTCTTATA
*
202224849 TATTTTTTA-TAAAATTGTAT
1 TATTATTTACTAAAATTGTAT
*
202224869 TATTATTTACTAAATTTGTA
1 TATTATTTACTAAAATTGTA
202224889 AATGGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTAT
Found at i:202225357 original size:21 final size:22
Alignment explanation
Indices: 202225333--202225393 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
202225323 GCAAAATACT
202225333 TATTATATTT-TTATTATTTTA
1 TATTATATTTCTTATTATTTTA
202225354 TATTATATTTCCTTA-TATTTTA
1 TATTATATTT-CTTATTATTTTA
* *
202225376 T-TCATATTATATTATTAT
1 TATTATATT-TCTTATTAT
202225394 ACATAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 19 0.56
22 12 0.35
23 3 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTCTTATTATTTTA
Found at i:202229409 original size:28 final size:28
Alignment explanation
Indices: 202229370--202229438 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
202229360 TTTAAAACCC
202229370 TAGGGGT-ATTTCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
202229397 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
202229425 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
202229439 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:202231270 original size:19 final size:18
Alignment explanation
Indices: 202231233--202231276 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
202231223 ATACATACAG
202231233 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
202231250 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
202231269 TACTAATT
1 TAATAATT
202231277 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:202242943 original size:206 final size:205
Alignment explanation
Indices: 202242589--202243136 Score: 898
Period size: 206 Copynumber: 2.7 Consensus size: 205
202242579 AGCTGAAACA
* *
202242589 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ACATAGCTGATTTGGC
* * * *
202242654 TTTCACGTGCTTACGATGAGGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAGA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
*
202242719 TCGAAGTTTGGCGTCTCCATATTTGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGAT
130 TCGAAGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGAT
202242784 TAGACTGAAGC
195 TAGACTGAAGC
*
202242795 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTGATTTAGC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAA-CATAGCTGATTTGGC
* *
202242860 TTTCACGTGCTTACGCTGAAACAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* *
202242925 TCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACTTTCAGATGAT
130 TCGAAGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGAT
*
202242990 TAGATTGAAGC
195 TAGACTGAAGC
* * * * *
202243001 AGATCAAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGT
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ACATAGCTGATTTGGC
*
202243066 TTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
65 TTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
202243131 TCGAAG
130 TCGAAG
202243137 AAGCAGATTT
Statistics
Matches: 318, Mismatches: 22, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
205 1 0.00
206 316 0.99
207 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (205 bp):
AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAACATAGCTGATTTGGCT
TTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
CGAAGTTTGGCGTCTCCATATTCGACGAAGGGCAGACACATAGCAGATCTAACCTTCAGATGATT
AGACTGAAGC
Found at i:202250649 original size:25 final size:25
Alignment explanation
Indices: 202250621--202250668 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
202250611 ATATACCATG
* * *
202250621 AAAATGATCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
202250646 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
202250669 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:202250737 original size:20 final size:20
Alignment explanation
Indices: 202250712--202250770 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
202250702 TAAATATGGT
*
202250712 ATGTATGAGATGCACATGAC
1 ATGTATGATATGCACATGAC
*
202250732 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
202250752 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
202250771 GGTAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:202250848 original size:24 final size:24
Alignment explanation
Indices: 202250821--202250963 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
202250811 GAGGAAGTGA
202250821 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
202250845 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
202250869 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
202250892 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * * * *
202250916 GAAAGGGATTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
202250940 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
202250964 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 9, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
23 23 0.21
24 75 0.70
25 9 0.08
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:202250914 original size:47 final size:47
Alignment explanation
Indices: 202250821--202250963 Score: 189
Period size: 47 Copynumber: 3.0 Consensus size: 47
202250811 GAGGAAGTGA
202250821 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
202250869 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * * * *
202250916 GAAAGGGATTTTGCCCCAATTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
202250964 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
47 41 0.48
48 34 0.40
49 11 0.13
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:202250944 original size:71 final size:72
Alignment explanation
Indices: 202250821--202250964 Score: 202
Period size: 71 Copynumber: 2.0 Consensus size: 72
202250811 GAGGAAGTGA
* * *
202250821 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTATGCCCCAATTATCAAAAGAGGC-TAGGCCT
202250884 CCAGTTAT
65 CCAGTTAT
** * *
202250892 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGATTTTGCCCCAATTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTATGCCCCAATTATCAAAAGAGGCTAGGCCTC
202250957 CAGTTAT
66 CAGTTAT
202250964 A
1 A
202250965 TGATAAAGCA
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
71 52 0.81
72 12 0.19
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGATTATGCCCCAATTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:202251190 original size:31 final size:31
Alignment explanation
Indices: 202251155--202251249 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
202251145 CGTTTACAGT
202251155 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
202251186 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
202251217 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
202251248 AA
1 AA
202251250 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:202258241 original size:20 final size:20
Alignment explanation
Indices: 202258216--202258274 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
202258206 TAAATATGGT
*
202258216 ATGTATGAGATGCACATGAC
1 ATGTATGATATGCACATGAC
*
202258236 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
202258256 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
202258275 GGTAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:202258440 original size:25 final size:24
Alignment explanation
Indices: 202258325--202258444 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
202258315 GAGGAAGTGA
202258325 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
202258349 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
202258373 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
202258397 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
202258421 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
202258445 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
24 77 0.88
25 11 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:202258671 original size:31 final size:31
Alignment explanation
Indices: 202258636--202258730 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
202258626 CGTTTACAGT
*
202258636 AAAGGCTTCGGCCCAGTAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
202258667 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
202258698 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
202258729 AA
1 AA
202258731 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:202260651 original size:27 final size:27
Alignment explanation
Indices: 202260621--202260761 Score: 126
Period size: 27 Copynumber: 5.2 Consensus size: 27
202260611 ATTACCGTTT
* * *
202260621 TACCCTCAATTTACAGAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
** *
202260648 TACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
202260675 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTC-AGTTTATAAAATTACCAAAA
**
202260702 TACCCTTTGTTTATAAAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
202260729 TACCCAT-GGTTTGA-AAAATTACTAAAA
1 TACCC-TCAGTTT-ATAAAATTACCAAAA
202260756 TACCCT
1 TACCCT
202260762 TGTAGGGTAA
Statistics
Matches: 93, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.01
27 90 0.97
28 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.31
Consensus pattern (27 bp):
TACCCTCAGTTTATAAAATTACCAAAA
Found at i:202260773 original size:27 final size:27
Alignment explanation
Indices: 202260687--202260804 Score: 114
Period size: 27 Copynumber: 4.4 Consensus size: 27
202260677 CCCCTAGTTT
* **
202260687 GTAAAATTACTAAAATACCCTTTGTTT
1 GTAAAATTACTAAAATACCCATTGTGG
* * * **
202260714 ATAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACTAAAATACCCATTGTGG
*
202260741 GAAAAATTACTAAAATACCC-TTGTAGG
1 GTAAAATTACTAAAATACCCATTGT-GG
*
202260768 GTAAAATTACTGAAATACCC-TTGTGGG
1 GTAAAATTACTAAAATACCCATTGT-GG
202260795 GTAAAATTAC
1 GTAAAATTAC
202260805 CATTTTGCCC
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.04
27 74 0.96
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (27 bp):
GTAAAATTACTAAAATACCCATTGTGG
Found at i:202260773 original size:54 final size:54
Alignment explanation
Indices: 202260637--202260787 Score: 169
Period size: 54 Copynumber: 2.8 Consensus size: 54
202260627 CAATTTACAG
* * ** * * *
202260637 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAA
1 AATTACTAAAATACCCTTTGTGGATAAAATTACCAAAATACCCATAGTTTGAAA
** *
202260691 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTTTGTGGATAAAATTACCAAAATACCCATAGTTTGAAA
* **
202260745 AATTACTAAAATACCC-TTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTTTGT-GGATAAAATTACCAAAATACCC
202260788 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.05
54 81 0.95
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTTTGTGGATAAAATTACCAAAATACCCATAGTTTGAAA
Found at i:202260789 original size:81 final size:81
Alignment explanation
Indices: 202260637--202260789 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
202260627 CAATTTACAG
* **
202260637 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATTACTAAAA
202260702 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * * *
202260718 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATA-CCCTTGTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTAGT-GGGTAAAATTACTAA
202260781 AATACCCTT
64 AATACCCTT
202260790 GTGGGGTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
80 6 0.10
81 56 0.89
82 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTAGTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:202261457 original size:28 final size:28
Alignment explanation
Indices: 202261425--202261483 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
202261415 GCGTAGATCA
202261425 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
202261453 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
202261481 CGA
1 CGA
202261484 TATACCTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:202262736 original size:16 final size:15
Alignment explanation
Indices: 202262717--202262765 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
202262707 GAATTAAGCG
202262717 AAATAATAAATAAATA
1 AAATAA-AAATAAATA
** *
202262733 AAATAAAAATATTTTT
1 AAATAAAAATA-AATA
202262749 AAATAAAAATAAATA
1 AAATAAAAATAAATA
202262764 AA
1 AA
202262766 TCACCCAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
15 8 0.31
16 18 0.69
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATAAAAATAAATA
Found at i:202266391 original size:49 final size:49
Alignment explanation
Indices: 202266335--202266549 Score: 387
Period size: 49 Copynumber: 4.4 Consensus size: 49
202266325 TATCAAAATT
202266335 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
202266384 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
202266433 TGTGAAAAG-GTATATATATGTGATAAGGCCTCATGGCCGATGTGATGAA
1 TGTG-AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
202266482 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
202266531 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTATATATAT
202266550 ATGTGGTAAA
Statistics
Matches: 159, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
48 3 0.02
49 152 0.96
50 4 0.03
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:202278332 original size:28 final size:27
Alignment explanation
Indices: 202278292--202278388 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 27
202278282 GTAATAAGCC
202278292 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATA-TCGAACT
*
202278320 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-AT-ATCGAACT
* * *
202278348 TGCACACTTAGTGCTATAAT-TTGAACC
1 CGCACACTTAGTGCT-TAATATCGAACT
202278375 CGCACACTTAGTGC
1 CGCACACTTAGTGC
202278389 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
27 19 0.32
28 35 0.59
29 3 0.05
30 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTTAATATCGAACT
Found at i:202285959 original size:28 final size:28
Alignment explanation
Indices: 202285919--202286017 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
202285909 TGTAATAAGC
*
202285919 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
202285947 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* ** * * *
202285975 TGCACACTTAGTGCTATACCATTTGAACC
1 CGCACACTTAGTGCT-TAATAATCGAACT
202286004 CGCACACTTAGTGC
1 CGCACACTTAGTGC
202286018 CAATTTGTGA
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.62
29 18 0.31
30 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:202287688 original size:7 final size:7
Alignment explanation
Indices: 202287678--202287766 Score: 52
Period size: 7 Copynumber: 12.3 Consensus size: 7
202287668 AGTGGGTAAA
202287678 GGTTAAG
1 GGTTAAG
*
202287685 GGTTATG
1 GGTTAAG
* *
202287692 GATTATG
1 GGTTAAG
202287699 GGTTTAAG
1 GG-TTAAG
*
202287707 GATTAAG
1 GGTTAAG
* *
202287714 GGTCATG
1 GGTTAAG
*
202287721 GGTTATG
1 GGTTAAG
*
202287728 GGTTTAAT
1 GG-TTAAG
202287736 GGTTAAAG
1 GGTT-AAG
* *
202287744 GGATAGG
1 GGTTAAG
*
202287751 GGTTAGG
1 GGTTAAG
202287758 GGTTAAG
1 GGTTAAG
202287765 GG
1 GG
202287767 GTTTAATTAA
Statistics
Matches: 63, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
7 48 0.76
8 15 0.24
ACGTcount: A:0.25, C:0.01, G:0.42, T:0.33
Consensus pattern (7 bp):
GGTTAAG
Found at i:202287721 original size:29 final size:28
Alignment explanation
Indices: 202287663--202287741 Score: 97
Period size: 29 Copynumber: 2.8 Consensus size: 28
202287653 TAAAGTTTAG
* *
202287663 GGATTAGTGGG-TAAAGGTTAAGGGTTAT
1 GGATTA-TGGGTTTAAGGTTAAGGGTCAT
202287691 GGATTATGGGTTTAAGGATTAAGGGTCAT
1 GGATTATGGGTTTAAGG-TTAAGGGTCAT
*
202287720 GGGTTATGGGTTTAATGGTTAA
1 GGATTATGGGTTTAA-GGTTAA
202287742 AGGGATAGGG
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
27 4 0.09
28 11 0.24
29 28 0.62
30 2 0.04
ACGTcount: A:0.27, C:0.01, G:0.37, T:0.35
Consensus pattern (28 bp):
GGATTATGGGTTTAAGGTTAAGGGTCAT
Found at i:202287853 original size:21 final size:22
Alignment explanation
Indices: 202287800--202287855 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
202287790 ATGGTAAAGG
*
202287800 GGTTTATGGTTTATGAGCTAAT
1 GGTTTATGGTTTATGAGATAAT
* * **
202287822 GTTTTAAGGTTTA-GAGATTTT
1 GGTTTATGGTTTATGAGATAAT
202287843 GGTTTATGGTTTA
1 GGTTTATGGTTTA
202287856 AGGGTTGGGG
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
21 16 0.59
22 11 0.41
ACGTcount: A:0.21, C:0.02, G:0.27, T:0.50
Consensus pattern (22 bp):
GGTTTATGGTTTATGAGATAAT
Found at i:202287882 original size:21 final size:21
Alignment explanation
Indices: 202287824--202287882 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
202287814 GAGCTAATGT
* **
202287824 TTTAAGGTTTAGAGATTTTGG
1 TTTAAGGTTTAGAGGTTGGGG
*
202287845 TTTATGGTTTA-AGGGTTGGGG
1 TTTAAGGTTTAGA-GGTTGGGG
202287866 TTTAAGGTTTAGAGGTT
1 TTTAAGGTTTAGAGGTT
202287883 AGTGGATTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
20 1 0.03
21 29 0.94
22 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (21 bp):
TTTAAGGTTTAGAGGTTGGGG
Found at i:202287902 original size:42 final size:42
Alignment explanation
Indices: 202287824--202287903 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
202287814 GAGCTAATGT
* * *
202287824 TTTAAGGTTTAGAGATTTTGGTTTATGGTTTAAGGGTTGGGG
1 TTTAAGGTTTAGAGATTGTGGATTAGGGTTTAAGGGTTGGGG
*
202287866 TTTAAGGTTTAGAGGTTAGTGGATTAGGGTTT-AGGGTT
1 TTTAAGGTTTAGAGATT-GTGGATTAGGGTTTAAGGGTT
202287904 TTATATGGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 22 0.67
43 11 0.33
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (42 bp):
TTTAAGGTTTAGAGATTGTGGATTAGGGTTTAAGGGTTGGGG
Found at i:202290585 original size:93 final size:93
Alignment explanation
Indices: 202290473--202290644 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
202290463 GCCCATAAGT
* *
202290473 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
202290538 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
202290566 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
202290631 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
202290645 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:202290640 original size:46 final size:46
Alignment explanation
Indices: 202290465--202290640 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
202290455 TGTAACCCGC
* * *
202290465 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
202290511 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
202290561 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
202290604 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
202290641 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:202293064 original size:29 final size:29
Alignment explanation
Indices: 202293025--202293112 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
202293015 CAAAGATAAC
*
202293025 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
202293054 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
202293083 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
202293113 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:202293083 original size:15 final size:15
Alignment explanation
Indices: 202293025--202293103 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
202293015 CAAAGATAAC
*
202293025 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
202293039 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
202293054 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
202293068 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
202293083 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
202293098 AAGAAA
1 AAGAAA
202293104 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:202293112 original size:15 final size:15
Alignment explanation
Indices: 202293036--202293112 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
202293026 AGAAAACCGA
202293036 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
202293051 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
202293065 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
202293079 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
202293095 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
202293110 ATA
1 ATA
202293113 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:202296175 original size:93 final size:93
Alignment explanation
Indices: 202296063--202296234 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
202296053 GCCCATAAGT
* *
202296063 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
202296128 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
202296156 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
202296221 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
202296235 AAATATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:202296230 original size:46 final size:46
Alignment explanation
Indices: 202296055--202296230 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
202296045 TGTAACCCGC
* * *
202296055 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
202296101 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
202296151 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
202296194 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
202296231 TGCCAAATAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:202307191 original size:20 final size:20
Alignment explanation
Indices: 202307128--202307191 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
202307118 CAATCTCAAT
* *
202307128 CATATAAACAGTAATTCATT
1 CATATAAACAGTACTTCATC
* *
202307148 CA-AT-AACAGAAAC-TCCTC
1 CATATAAACAG-TACTTCATC
*
202307166 CTTATAAACAGTACTTCATC
1 CATATAAACAGTACTTCATC
202307186 CATATA
1 CATATA
202307192 TCAGTAATTC
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
18 9 0.28
19 7 0.22
20 16 0.50
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (20 bp):
CATATAAACAGTACTTCATC
Found at i:202308388 original size:10 final size:10
Alignment explanation
Indices: 202308373--202308413 Score: 82
Period size: 10 Copynumber: 4.1 Consensus size: 10
202308363 AAATACCTTA
202308373 ATATATGTCC
1 ATATATGTCC
202308383 ATATATGTCC
1 ATATATGTCC
202308393 ATATATGTCC
1 ATATATGTCC
202308403 ATATATGTCC
1 ATATATGTCC
202308413 A
1 A
202308414 CTCACCCTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.39
Consensus pattern (10 bp):
ATATATGTCC
Found at i:202311660 original size:29 final size:28
Alignment explanation
Indices: 202311628--202311730 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
202311618 GTGACGAGAT
* *
202311628 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
202311657 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
202311686 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
202311715 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
202311731 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:202315424 original size:46 final size:46
Alignment explanation
Indices: 202315374--202315549 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
202315364 TGGTTGAGCA
202315374 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
202315420 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
202315465 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
202315513 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
202315550 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:202315530 original size:93 final size:93
Alignment explanation
Indices: 202315371--202315542 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
202315361 GGATGGTTGA
* *
202315371 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
202315436 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
202315464 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
202315529 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
202315543 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:202320324 original size:40 final size:40
Alignment explanation
Indices: 202320276--202320368 Score: 127
Period size: 40 Copynumber: 2.3 Consensus size: 40
202320266 ATGACTCACT
202320276 CAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTAACTCGCA
* * *
202320316 CGAATGCCTTTGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTAAACCCGGGTTTAGTAACTCGCA
202320356 CAAATGCCTTCGG
1 CAAATGCCTTCGG
202320369 ATCTTAGTCC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 40 0.87
41 6 0.13
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTAAACCCGGGTTTAGTAACTCGCA
Found at i:202328606 original size:40 final size:40
Alignment explanation
Indices: 202328521--202328671 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
202328511 AATTGAATGA
* * * **
202328521 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
202328561 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
202328602 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
202328641 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
202328672 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:202328685 original size:40 final size:40
Alignment explanation
Indices: 202328558--202328687 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
202328548 ATGCTGGAAA
* * *
202328558 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
202328598 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
202328638 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
202328678 TTATATCCGG
1 TTATATCCGG
202328688 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:202336613 original size:39 final size:41
Alignment explanation
Indices: 202336510--202336663 Score: 128
Period size: 39 Copynumber: 3.9 Consensus size: 41
202336500 TGAAAATTGA
* * **
202336510 ATGA-TATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAA
1 ATGACTATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTC
* * *
202336549 ATTA-TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 ATGACTATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--C
202336591 -T-AC-ATCC-GGCTAAGACCCGAAGGC-ATTCGTGCGAGTC
1 ATGACTATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTC
* *
202336628 ATGTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATGACTATCCGGGCTAAGACCCGAAGGCAATTGTGC
202336664 AGGTGGTTAT
Statistics
Matches: 93, Mismatches: 11, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
37 1 0.01
38 4 0.04
39 39 0.42
40 25 0.27
41 22 0.24
42 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (41 bp):
ATGACTATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTC
Found at i:202339113 original size:40 final size:40
Alignment explanation
Indices: 202339060--202339159 Score: 141
Period size: 40 Copynumber: 2.5 Consensus size: 40
202339050 GGATATAACG
*
202339060 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
* *
202339100 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
202339140 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
202339160 ATCTTAGTCC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 48 0.89
41 6 0.11
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:202339177 original size:80 final size:80
Alignment explanation
Indices: 202339060--202339211 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 80
202339050 GGATATAACG
* * * *
202339060 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTAAC-TCGCACGAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACAAAGCCCGGATATAGTAACTTAGCAC-AAAGCCTTCGGGACT
202339124 TAACCCGGGTTTAGTA
65 TAACCCGGGTTTAGTA
** * *
202339140 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGA-CAAAGCCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
*
202339204 TAGCCCGG
65 TAACCCGG
202339212 ACATCATTCA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
79 3 0.05
80 53 0.87
81 5 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACAAAGCCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AACCCGGGTTTAGTA
Found at i:202344067 original size:40 final size:40
Alignment explanation
Indices: 202344012--202344204 Score: 273
Period size: 40 Copynumber: 4.8 Consensus size: 40
202344002 TTATTTGATG
*
202344012 TGGAATTGTATCCGGGCTTAAAGACCCGCATGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * * *
202344052 TGGAATTGTATCCGGGCTTAAAGTCCTGCAGGCTTCATGT
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
202344092 TGGAATTGTATCCGAGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
202344132 TGGAATTGTATCCGGGCTTAAAGATCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
202344172 TGGAA-TGACATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCCGCAGGCT
202344205 GTGCTAAATA
Statistics
Matches: 136, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 16 0.12
40 120 0.88
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:202345439 original size:21 final size:23
Alignment explanation
Indices: 202345410--202345451 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
202345400 TTTAGCAAGA
*
202345410 ACAACATT-AATCATAGAAACAG
1 ACAACATTAAATCACAGAAACAG
202345432 ACAA-ATTAAATCACAGAAAC
1 ACAACATTAAATCACAGAAAC
202345452 TTCGCAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.57, C:0.19, G:0.07, T:0.17
Consensus pattern (23 bp):
ACAACATTAAATCACAGAAACAG
Found at i:202347493 original size:39 final size:40
Alignment explanation
Indices: 202347327--202347582 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
202347317 TGGATGATAA
* * *
202347327 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
202347367 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
202347407 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
202347447 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
202347486 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
202347525 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
202347565 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
202347583 TACTTGGCTT
Statistics
Matches: 201, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
38 8 0.04
39 73 0.36
40 120 0.60
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:202354656 original size:40 final size:40
Alignment explanation
Indices: 202354600--202354842 Score: 357
Period size: 40 Copynumber: 6.1 Consensus size: 40
202354590 TGGATGATAA
* * * *
202354600 CCGGGCTAAGTTCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
202354640 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
202354680 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
202354719 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
202354759 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
202354799 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
202354839 CCGG
1 CCGG
202354843 TTCAATCCCG
Statistics
Matches: 188, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 42 0.22
40 146 0.78
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:202354734 original size:79 final size:78
Alignment explanation
Indices: 202354603--202354856 Score: 350
Period size: 79 Copynumber: 3.2 Consensus size: 78
202354593 ATGATAACCG
* * * *
202354603 GGCTAAGTTCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTTGTG
202354667 CGAGTTACTATATCC
65 CGAG-TACTATATCC
202354682 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
202354747 GAGATACTATATCC
66 GAG-TACTATATCC
* * * * *
202354761 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGTATTCGAG
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
202354826 CGAGTAGCTATATCC
65 CGAGTA-CTATATCC
*
202354841 GGTTCAA-TCCCGAAGG
1 GGCT-AAGTCCCGAAGG
202354857 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
78 1 0.01
79 85 0.53
80 73 0.46
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (78 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGTACTATATCC
Found at i:202354856 original size:119 final size:119
Alignment explanation
Indices: 202354600--202354842 Score: 357
Period size: 119 Copynumber: 2.0 Consensus size: 119
202354590 TGGATGATAA
* * *
202354600 CCGGGCTAAGTTCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCAAAGGCATTTG
* *
202354665 TGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66 TGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATAT
*
202354719 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGAT-ACTA-TATCCGGGCTAAGTCCCAAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAG-TGACTAGT-TCCGGGCTAAGTCCCAAAGGCATT
* *
202354782 TGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
64 TGTGCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCATTCGAGCGAGTTA-CTATAT
202354839 CCGG
1 CCGG
202354843 TTCAATCCCG
Statistics
Matches: 112, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
118 1 0.01
119 76 0.68
120 35 0.31
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCAAAGGCATTTG
TGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATAT
Found at i:202361539 original size:18 final size:18
Alignment explanation
Indices: 202361498--202361540 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
202361488 AGTTTAGGAA
*
202361498 AACACGAGTTTTCAAAAT
1 AACACGAGTTTTCAAAAG
* * *
202361516 AGCACGATTTTTCTAAAG
1 AACACGAGTTTTCAAAAG
202361534 AACACGA
1 AACACGA
202361541 CCTTTCAACA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.26
Consensus pattern (18 bp):
AACACGAGTTTTCAAAAG
Found at i:202367949 original size:28 final size:28
Alignment explanation
Indices: 202367916--202367984 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
202367906 GCGTAGATCA
202367916 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
* *
202367944 TGAAATTACCCCTAAAGAGCATAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
202367972 CGATA-TACCCCTA
1 CGAAATTACCCCTA
202367985 GGGTTTTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 8 0.22
28 29 0.78
ACGTcount: A:0.42, C:0.26, G:0.10, T:0.22
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:202375540 original size:29 final size:29
Alignment explanation
Indices: 202375507--202375638 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
202375497 GTGACGAGAT
202375507 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
202375536 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
202375565 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
202375594 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
202375623 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
202375639 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:202383480 original size:29 final size:29
Alignment explanation
Indices: 202383447--202383578 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
202383437 GTGACGAGAT
202383447 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
202383476 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
202383505 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
202383534 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
202383563 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
202383579 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:202390489 original size:43 final size:43
Alignment explanation
Indices: 202390419--202390542 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 43
202390409 TCATATATCG
* * * * * *
202390419 ATGCCACTGTCCTAGATAGAGTCTTACACGAAATC-GATTAACA
1 ATGCCAATGTCCCAGACATAGTCTTACACGAAATCACAAT-ACA
* * *
202390462 ATGCCAATGTCCCAGACATAGTTTTACATGTAATCACAATACA
1 ATGCCAATGTCCCAGACATAGTCTTACACGAAATCACAATACA
* * *
202390505 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCCAGACATAGTCTTACACGAAATCACA
202390543 TCTTAGTAAC
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
43 67 0.97
44 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATAGTCTTACACGAAATCACAATACA
Found at i:202390530 original size:86 final size:85
Alignment explanation
Indices: 202390374--202390532 Score: 187
Period size: 86 Copynumber: 1.9 Consensus size: 85
202390364 TAAAGCTCAT
* * * * * * * *
202390374 ACAATGCCATATCCCAGATATGGTCTTACATGTTATCATATATCGATGCCACTGTCCTAGATAGA
1 ACAATGCCATATCCCAGACATAGTCTTACATGTAATCAAATATCAATGCCAATGTCCCAGACAGA
202390439 GTCTTACACGAAATCGATTA
66 GTCTTACACGAAATCGATTA
* *
202390459 ACAATGCCAATGTCCCAGACATAGTTTTACATGTAATCACAATA-CAATGCCAATGTCCCAGACA
1 ACAATGCC-ATATCCCAGACATAGTCTTACATGTAATCA-AATATCAATGCCAATGTCCCAGACA
202390523 TG-GTCTTACA
64 -GAGTCTTACA
202390533 TGTAATCACA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
85 8 0.13
86 49 0.80
87 4 0.07
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.28
Consensus pattern (85 bp):
ACAATGCCATATCCCAGACATAGTCTTACATGTAATCAAATATCAATGCCAATGTCCCAGACAGA
GTCTTACACGAAATCGATTA
Found at i:202390758 original size:39 final size:39
Alignment explanation
Indices: 202390704--202390780 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
202390694 CAATGTAAGT
*
202390704 ACGTCTATTAGCATACGAACTTGCCTCGTTCGCTGAAAG
1 ACGTCTATTAGCATACGAACTTACCTCGTTCGCTGAAAG
*
202390743 ACGTCTATTAGCATACGAACTTACTTCGTTCGCTGAAA
1 ACGTCTATTAGCATACGAACTTACCTCGTTCGCTGAAA
202390781 CGATGAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (39 bp):
ACGTCTATTAGCATACGAACTTACCTCGTTCGCTGAAAG
Found at i:202392726 original size:21 final size:21
Alignment explanation
Indices: 202392700--202392742 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
202392690 AGCCTCCTAA
*
202392700 AGTTG-TTGTTTCTCTTTCTTT
1 AGTTGTTTGTTT-TCTATCTTT
202392721 AGTTGTTTGTTTTCTATCTTT
1 AGTTGTTTGTTTTCTATCTTT
202392742 A
1 A
202392743 AAAGAGAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.09, C:0.12, G:0.14, T:0.65
Consensus pattern (21 bp):
AGTTGTTTGTTTTCTATCTTT
Found at i:202394529 original size:79 final size:79
Alignment explanation
Indices: 202394418--202394642 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 79
202394408 GCTACTCGTT
* * *
202394418 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGAACTTAGCCCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
202394483 ATTTAGTAACTCGCA
65 ATTTAGTAACGCGCA
* * *
202394498 CCAATGCCTTCGG-GCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGAACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGA-CTTAGCCC
202394560 GGATTTAGTAACGCGCA
63 GGATTTAGTAACGCGCA
* * *
202394577 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGAACTTAGCCCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
202394641 GA
64 GA
202394643 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 4 0.03
79 64 0.51
80 45 0.36
81 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGAACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACGCGCA
Found at i:202394602 original size:119 final size:120
Alignment explanation
Indices: 202394418--202394642 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
202394408 GCTACTCGTT
* *
202394418 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACGCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
202394483 ATTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
66 ATATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * **
202394537 CAAATGCCTTCGGATCTTAGTCCGGATT-TAGTAACGCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGAACATAGCCCGG-TTATAGTAACGCGCACAAATGCCTTCGGGA-CTTAACCC
*
202394600 GGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
202394643 CATCATTCGA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
118 3 0.03
119 71 0.78
120 17 0.19
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGAACATAGCCCGGTTATAGTAACGCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:202394642 original size:40 final size:40
Alignment explanation
Indices: 202394399--202394642 Score: 266
Period size: 40 Copynumber: 6.1 Consensus size: 40
202394389 CGGAATTTAA
** * *
202394399 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGAACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
202394439 CCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
202394479 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
202394518 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
202394558 CCGGATTTAGTAACGCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
202394598 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
202394638 CCGGA
1 CCGGA
202394643 CATCATTCGA
Statistics
Matches: 175, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.19
40 130 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:202395416 original size:40 final size:40
Alignment explanation
Indices: 202395361--202395485 Score: 164
Period size: 40 Copynumber: 3.1 Consensus size: 40
202395351 TTCATGTAGC
* *
202395361 CCGGAATTAGTAACTCGCACAAATACCTTCGGATCTTAGT
1 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
202395401 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
* * * *
202395441 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGC
1 CCGGATTTAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGT
202395481 CCGGA
1 CCGGA
202395486 CATCATTCGA
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
40 66 0.86
41 11 0.14
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
Done.