Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 647 of 770
Found at i:203356830 original size:58 final size:58
Alignment explanation
Indices: 203356758--203356869 Score: 147
Period size: 58 Copynumber: 1.9 Consensus size: 58
203356748 CCCCCTTTTC
203356758 CCTTAGTAATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTTCTTTTCTTT
1 CCTTAGTAATTTCGGCCAAGAAGATGGAG-AAGGATGAACAAATTTTTTTCTTTTCTTT
*** **
203356816 CCTTAGTACA-TTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTCTTTT
1 CCTTAGTA-ATTTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTTCTTTT
203356870 TTTTTTCCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
58 43 0.91
59 4 0.09
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (58 bp):
CCTTAGTAATTTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTTCTTTTCTTT
Found at i:203361970 original size:40 final size:39
Alignment explanation
Indices: 203361925--203362090 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
203361915 CGGAATATAA
203361925 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
203361965 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
203362004 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
203362044 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
203362083 CCGGATAT
1 CCGGATAT
203362091 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:203362047 original size:79 final size:79
Alignment explanation
Indices: 203361941--203362090 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
203361931 ATAATCACGT
*
203361941 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
203362004 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
203362020 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
203362085 GGATAT
66 GGATAT
203362091 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:203368071 original size:13 final size:13
Alignment explanation
Indices: 203368053--203368131 Score: 149
Period size: 13 Copynumber: 6.1 Consensus size: 13
203368043 GCTCGATAGG
203368053 GACACGCCCGTGT
1 GACACGCCCGTGT
203368066 GACACGCCCGTGT
1 GACACGCCCGTGT
*
203368079 GACACGCCAGTGT
1 GACACGCCCGTGT
203368092 GACACGCCCGTGT
1 GACACGCCCGTGT
203368105 GACACGCCCGTGT
1 GACACGCCCGTGT
203368118 GACACGCCCGTGT
1 GACACGCCCGTGT
203368131 G
1 G
203368132 CGATTGCTTA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 64 1.00
ACGTcount: A:0.16, C:0.37, G:0.32, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:203370189 original size:18 final size:19
Alignment explanation
Indices: 203370139--203370189 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
203370129 ATTGCAAAAG
*
203370139 GAGTTTTAGTTTTATTTAT
1 GAGTTTTAGTTTTATTTAA
* *
203370158 TA-TATTAGGTTTTA-TTAA
1 GAGTTTTA-GTTTTATTTAA
203370176 GAGTTTTAGTTTTA
1 GAGTTTTAGTTTTA
203370190 CTTATTTTCT
Statistics
Matches: 25, Mismatches: 5, Indels: 5
0.71 0.14 0.14
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.25, C:0.00, G:0.16, T:0.59
Consensus pattern (19 bp):
GAGTTTTAGTTTTATTTAA
Found at i:203377289 original size:24 final size:23
Alignment explanation
Indices: 203377237--203377315 Score: 81
Period size: 23 Copynumber: 3.4 Consensus size: 23
203377227 GCTGATGGAT
* *
203377237 AGTAAGCTCT-ATTGAGCTAAAAC
1 AGTAAGCTCTGA-TAAGCTGAAAC
203377260 TA-TAAGCTCTGATAAGCTGGAAAC
1 -AGTAAGCTCTGATAAGCT-GAAAC
* *
203377284 AGTAAGCTCTTATGAGCTGAAAC
1 AGTAAGCTCTGATAAGCTGAAAC
203377307 AGTAAGCTC
1 AGTAAGCTC
203377316 CAACGAGCTG
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
23 28 0.58
24 20 0.42
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (23 bp):
AGTAAGCTCTGATAAGCTGAAAC
Found at i:203377309 original size:23 final size:23
Alignment explanation
Indices: 203377274--203377370 Score: 115
Period size: 23 Copynumber: 4.1 Consensus size: 23
203377264 AGCTCTGATA
*
203377274 AGCTGGAAACAGTAAGCTCTTATG
1 AGCT-GAAACAGTAAGCTCTTACG
**
203377298 AGCTGAAACAGTAAGCTCCAACG
1 AGCTGAAACAGTAAGCTCTTACG
**
203377321 AGCTGAAAACA-TAAGCTCCAACG
1 AGCTG-AAACAGTAAGCTCTTACG
203377344 AGCTGAAAACAGTAAGCTCTTACG
1 AGCTG-AAACAGTAAGCTCTTACG
203377368 AGC
1 AGC
203377371 CGATATATCG
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
23 44 0.67
24 22 0.33
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.18
Consensus pattern (23 bp):
AGCTGAAACAGTAAGCTCTTACG
Found at i:203379462 original size:28 final size:28
Alignment explanation
Indices: 203379401--203379498 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
203379391 TCACAAATTG
** * *
203379401 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
203379430 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
203379458 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
203379486 GCACTAAGTGTGC
1 GCACTAAGTGTGC
203379499 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:203386683 original size:28 final size:28
Alignment explanation
Indices: 203386622--203386719 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
203386612 TCACAAATTG
** * *
203386622 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
203386651 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
203386679 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
203386707 GCACTAAGTGTGC
1 GCACTAAGTGTGC
203386720 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:203389131 original size:45 final size:45
Alignment explanation
Indices: 203389057--203389214 Score: 255
Period size: 45 Copynumber: 3.5 Consensus size: 45
203389047 ATTTCACCTA
* *
203389057 CTAGGCTCGAA-GCCCGAATAGTATCTCACCAGCATTATAGCCTG
1 CTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTG
* * *
203389101 CTAGGCTCAAAGGCCCGAGTGGTATTTCACCGGCATTATAGCCTG
1 CTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTG
*
203389146 CTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTA
1 CTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTG
203389191 CTAGGCTCAAAGGCCCGAATAGTA
1 CTAGGCTCAAAGGCCCGAATAGTA
203389215 CTGTGCGATA
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
44 10 0.10
45 94 0.90
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (45 bp):
CTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTG
Found at i:203391933 original size:6 final size:6
Alignment explanation
Indices: 203391912--203392008 Score: 90
Period size: 6 Copynumber: 15.8 Consensus size: 6
203391902 TATTAGAACT
* * *
203391912 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
203391961 AGAATT AGAATC AGAATC AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
203392009 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
5 3 0.04
6 62 0.85
7 6 0.08
8 2 0.03
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:203391953 original size:19 final size:19
Alignment explanation
Indices: 203391929--203392005 Score: 73
Period size: 19 Copynumber: 3.8 Consensus size: 19
203391919 AAATGAGAAT
203391929 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTGA
*
203391948 CAGAATCAGAATCAGAATTAGAA
1 CAGAATCAGAATCAG--GT-G-A
* *
203391971 TCAGAATCAGTATCAGGTAA
1 -CAGAATCAGAATCAGGTGA
*
203391991 CAGAATCAAAATCAG
1 CAGAATCAGAATCAG
203392006 AATGTGAATG
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
19 28 0.60
20 1 0.02
21 1 0.02
22 2 0.04
23 1 0.02
24 14 0.30
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTGA
Found at i:203391960 original size:43 final size:43
Alignment explanation
Indices: 203391912--203392014 Score: 152
Period size: 43 Copynumber: 2.4 Consensus size: 43
203391902 TATTAGAACT
* *
203391912 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATGAGAATCAGAATCAGAATCAGGTAACAGAATC
* *
203391955 AGAATCAGAATTAGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATGAGAATCAGAATCAGAATCAGGTAACAGAATC
* *
203391998 AAAATCAGAATGTGAAT
1 AGAATCAGAATGAGAAT
203392015 GCAACCCCAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (43 bp):
AGAATCAGAATGAGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:203392289 original size:100 final size:98
Alignment explanation
Indices: 203392111--203392316 Score: 349
Period size: 100 Copynumber: 2.1 Consensus size: 98
203392101 TACCACAGAA
*
203392111 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCATATACAGATATTGCGGCTAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGCGGCTAGGCCACC
*
203392176 AGAATAGATATATATATATGTGGCGAAGCCACCAG
66 AGAACAG--ATATATATATGTGGCGAAGCCACCAG
* *
203392211 ATTGTAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGCGGCTAGGCCACT
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGCGGCTAGGCCACC
203392276 AGAACAGATATATATATGTGGCGAAGCCACCAG
66 AGAACAGATATATATATGTGGCGAAGCCACCAG
*
203392309 ATTACAGC
1 ATTGCAGC
203392317 ACTAGAACAG
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
98 32 0.32
100 68 0.68
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (98 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGCGGCTAGGCCACC
AGAACAGATATATATATGTGGCGAAGCCACCAG
Found at i:203392349 original size:98 final size:98
Alignment explanation
Indices: 203392115--203392355 Score: 308
Period size: 100 Copynumber: 2.4 Consensus size: 98
203392105 ACAGAAATTG
* *
203392115 CAGCGAGGCTGCCAGATATTGTGACGAAGTCACCATATACAGATATTGCGGCTAGGCCACCAGAA
1 CAGCGA-GCTGACAGATATTGTGACGAAGTCACCAGATACAGATATTGCGGCTAGGCCACCAGAA
* *
203392180 TAGATATATATATATGTGGCGAAGCCACCAGATTG
65 CAGA-ATATATATATGTGGCGAAGCCACCAGATTA
* * *
203392215 TAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGCGGCTAGGCCACTAGAA
1 CAGCGA-GCTGACAGATATTGTGACGAAGTCACCAGATACAGATATTGCGGCTAGGCCACCAGAA
203392280 CAG-ATATATATATGTGGCGAAGCCACCAGATTA
65 CAGAATATATATATGTGGCGAAGCCACCAGATTA
* * *
203392313 CAGC-A-CTAGAACAGATATATGTGGCGAGGCCACCAGATTACAG
1 CAGCGAGCT-G-ACAGATAT-TGTGACGAAGTCACCAGA-TACAG
203392356 CGAGGCTACC
Statistics
Matches: 127, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
95 2 0.02
96 1 0.01
97 8 0.06
98 47 0.37
99 5 0.04
100 64 0.50
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (98 bp):
CAGCGAGCTGACAGATATTGTGACGAAGTCACCAGATACAGATATTGCGGCTAGGCCACCAGAAC
AGAATATATATATGTGGCGAAGCCACCAGATTA
Found at i:203392615 original size:27 final size:27
Alignment explanation
Indices: 203392585--203392859 Score: 327
Period size: 27 Copynumber: 10.2 Consensus size: 27
203392575 AACACCCTAG
*
203392585 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* * *
203392612 GGGTAAAACGGTAATTCTGTAAATAGA
1 GGGTAAAACGGTAATTTTATAAATCGA
*
203392639 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
203392666 GGGTAAAA-GAGTAATTTTATAAATCGA
1 GGGTAAAACG-GTAATTTTATAAATCGA
* * * *
203392693 GGATAAAATGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *
203392720 GGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *
203392747 GGGTAAAACGATAATTTTATAAATTGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *
203392774 GGGTAAAACGGTAATTCTATAAATTGA
1 GGGTAAAACGGTAATTTTATAAATCGA
** *
203392801 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
** * * *
203392828 GGGTAAAATAGTAATTCTGTAAATTGA
1 GGGTAAAACGGTAATTTTATAAATCGA
203392855 GGGTA
1 GGGTA
203392860 CTTTGGTAAT
Statistics
Matches: 223, Mismatches: 23, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.00
27 221 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (27 bp):
GGGTAAAACGGTAATTTTATAAATCGA
Found at i:203392700 original size:81 final size:82
Alignment explanation
Indices: 203392585--203392859 Score: 360
Period size: 81 Copynumber: 3.4 Consensus size: 82
203392575 AACACCCTAG
*
203392585 GGGTAAAATG-GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAACG
1 GGGTAAAACGAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAACG
* *
203392649 GTAATTCTATAAATCGA
66 GTAATTTTGTAAATCGA
* * * * *
203392666 GGGTAAAA-GAGTAATTTTATAAATCGAGGATAAAATGATAATTTTGTAAATCGAGGGTAAAACG
1 GGGTAAAACGAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAACG
*
203392730 ATAATTTTGTAAATCGA
66 GTAATTTTGTAAATCGA
* * * **
203392747 GGGTAAAACGA-TAATTTTATAAATTGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATA
1 GGGTAAAACGAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAACG
203392811 GTAATTTTGTAAATCGA
66 GTAATTTTGTAAATCGA
* * * *
203392828 GGGTAAAA-TAGTAATTCTGTAAATTGAGGGTA
1 GGGTAAAACGAGTAATTTTATAAATCGAGGGTA
203392860 CTTTGGTAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
80 2 0.01
81 166 0.98
82 2 0.01
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (82 bp):
GGGTAAAACGAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATAGAGGGTAAAACG
GTAATTTTGTAAATCGA
Found at i:203392885 original size:27 final size:27
Alignment explanation
Indices: 203392855--203392951 Score: 158
Period size: 27 Copynumber: 3.6 Consensus size: 27
203392845 TGTAAATTGA
*
203392855 GGGTACTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
203392882 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
203392909 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
203392936 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
203392952 CTACCCTACA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:203392977 original size:54 final size:54
Alignment explanation
Indices: 203392865--203392977 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
203392855 GGGTACTTTG
* * * * **
203392865 GTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTCTACAAACTAGGGGCATTTCA
* **
203392919 GTAATTTTATAAACCAAGGGTATTTTGGTAATTCTACCCTAC-AGGGGCATTTCA
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA-CAAACTAGGGGCATTTCA
203392973 GTAAT
1 GTAAT
203392978 GCTAGCCTAC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 46 0.94
55 3 0.06
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (54 bp):
GTAATTTTACAAACCAAGGGTATTTTGGTAATTCTACAAACTAGGGGCATTTCA
Found at i:203399305 original size:28 final size:28
Alignment explanation
Indices: 203399244--203399341 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
203399234 TCACAAATTG
** * *
203399244 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
203399273 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
203399301 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
203399329 GCACTAAGTGTGC
1 GCACTAAGTGTGC
203399342 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:203406984 original size:28 final size:28
Alignment explanation
Indices: 203406923--203407020 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
203406913 TCACAAATTG
** * *
203406923 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
203406952 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
203406980 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
203407008 GCACTAAGTGTGC
1 GCACTAAGTGTGC
203407021 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:203410942 original size:29 final size:29
Alignment explanation
Indices: 203410900--203410998 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
203410890 TAGTGAATCT
203410900 GCACA-TTAGTGCTATATATTTTCAGCTC
1 GCACACTTAGTGCTATATATTTTCAGCTC
203410928 GCACACTTAGTGCTATATATTTTCAGCTC
1 GCACACTTAGTGCTATATATTTTCAGCTC
* * *
203410957 GCACACTTAGTGCTATAGA--ATCAAACTC
1 GCACACTTAGTGCTATATATTTTC-AGCTC
203410985 GCACACTTAGTGCT
1 GCACACTTAGTGCT
203410999 GTACAATTTT
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
27 2 0.03
28 23 0.35
29 41 0.62
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.33
Consensus pattern (29 bp):
GCACACTTAGTGCTATATATTTTCAGCTC
Found at i:203418904 original size:27 final size:29
Alignment explanation
Indices: 203418874--203418986 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 29
203418864 ATACAAGAGC
*
203418874 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
203418901 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* ** *
203418930 ATATATTTTCAGCTCGCCCACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* * * *
203418959 ATAGA-ATCAAACTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
203418987 GTACAATTTT
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
27 5 0.07
28 21 0.29
29 47 0.64
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:203418918 original size:29 final size:29
Alignment explanation
Indices: 203418886--203419015 Score: 147
Period size: 29 Copynumber: 4.5 Consensus size: 29
203418876 ATAGTGAATC
*
203418886 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
*
203418915 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAACT
* * *
203418944 CGCCCACTTAGTGCTATAGA--ATCAAACT
1 CGCACACTTAGTGCTATATATTTTC-AACT
* * * *
203418972 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATA-TATTTTCAACT
203419002 CGCACACTTAGTGC
1 CGCACACTTAGTGC
203419016 CAATCTTGTC
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.02
28 19 0.22
29 48 0.55
30 17 0.20
31 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAACT
Found at i:203427013 original size:79 final size:80
Alignment explanation
Indices: 203426877--203427094 Score: 232
Period size: 79 Copynumber: 2.8 Consensus size: 80
203426867 GAATCACGTA
*** * **
203426877 CCTTCGGAAT-TTAA-CCGGATATAACGACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTAT
1 CCTTCGG-ATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-T
*
203426939 AGTAACTCGCACGAATG
64 AGTAACTCGCACGAACG
* *
203426956 CCTTCGGGA-CTTAACCCGGGTTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTA
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
*
203427019 TTAACTCGCACGAACG
65 GTAACTCGCACGAACG
** * *
203427035 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
203427095 CATCATTCAA
Statistics
Matches: 116, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.03
79 63 0.54
80 50 0.43
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAG
TAACTCGCACGAACG
Found at i:203427094 original size:40 final size:39
Alignment explanation
Indices: 203426903--203427094 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 39
203426893 GGATATAACG
* ** *
203426903 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
203426943 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* *
203426983 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
203427022 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
203427062 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
203427095 CATCATTCAA
Statistics
Matches: 126, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 83 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:203430446 original size:73 final size:72
Alignment explanation
Indices: 203430360--203430599 Score: 331
Period size: 72 Copynumber: 3.3 Consensus size: 72
203430350 AAATGCTAAA
* * *
203430360 CTAGTTTTATCAATTGTTATTTATGTTTGATTTTTGGATATTGAATTTATGTCTCTACTTATTTA
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGT-TCTACTTATTTA
203430425 TGTGTAAT
65 TGTGTAAT
* *
203430433 CTAGTTTTATCAATGGCTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
203430498 GTGTAAT
66 GTGTAAT
* * * *
203430505 CTACTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATATTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
* *
203430570 ACT-AAAT
66 -GTGTAAT
* *
203430577 -TAGTTTTACCAATACTTGTTTAT
1 CTAGTTTTATCAATAGTTGTTTAT
203430600 ATATGATTTT
Statistics
Matches: 150, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
71 19 0.13
72 82 0.55
73 49 0.33
ACGTcount: A:0.24, C:0.08, G:0.14, T:0.55
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTGTAAT
Found at i:203432630 original size:12 final size:13
Alignment explanation
Indices: 203432604--203432663 Score: 59
Period size: 13 Copynumber: 4.7 Consensus size: 13
203432594 CTTAAATTTT
203432604 TCAAAAACACTTC
1 TCAAAAACACTTC
203432617 TCAAAAACAC-TC
1 TCAAAAACACTTC
** *
203432629 TCAAAAGTACTTT
1 TCAAAAACACTTC
* * *
203432642 TCCATATCACTTC
1 TCAAAAACACTTC
203432655 TCAAAAACA
1 TCAAAAACA
203432664 TTGCCAAACT
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
12 10 0.29
13 25 0.71
ACGTcount: A:0.43, C:0.28, G:0.02, T:0.27
Consensus pattern (13 bp):
TCAAAAACACTTC
Found at i:203445442 original size:46 final size:44
Alignment explanation
Indices: 203445383--203445497 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
203445373 ACAGGACAGA
* *
203445383 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
203445429 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
203445473 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
203445498 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:203445478 original size:44 final size:45
Alignment explanation
Indices: 203445383--203445516 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
203445373 ACAGGACAGA
* *
203445383 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
203445429 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
203445473 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
203445517 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:203451583 original size:46 final size:44
Alignment explanation
Indices: 203451524--203451638 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
203451514 ACAGGACAGA
* *
203451524 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
203451570 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
203451614 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
203451639 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:203451619 original size:44 final size:45
Alignment explanation
Indices: 203451524--203451657 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
203451514 ACAGGACAGA
* *
203451524 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
203451570 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
203451614 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
203451658 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:203459825 original size:29 final size:31
Alignment explanation
Indices: 203459766--203459829 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
203459756 TTAAGTATTG
*
203459766 TTATCCCACATCTTTTATATATTGAATTTTT
1 TTATCCCACATCTTTTATATATAGAATTTTT
*
203459797 TTATCCCACATCTTTTATAT-TAGATTTTTT
1 TTATCCCACATCTTTTATATATAGAATTTTT
203459827 TTA
1 TTA
203459830 CTTGTATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 11 0.35
31 20 0.65
ACGTcount: A:0.25, C:0.16, G:0.03, T:0.56
Consensus pattern (31 bp):
TTATCCCACATCTTTTATATATAGAATTTTT
Found at i:203463236 original size:40 final size:40
Alignment explanation
Indices: 203463170--203463320 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
203463160 AAATTGAATG
* * *
203463170 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
203463209 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
203463249 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
203463289 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
203463321 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:203463334 original size:40 final size:40
Alignment explanation
Indices: 203463207--203463336 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
203463197 ATGCTGGAAA
* * *
203463207 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
203463247 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
203463287 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
203463327 TTATATCCGG
1 TTATATCCGG
203463337 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:203471357 original size:40 final size:40
Alignment explanation
Indices: 203471230--203471359 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
203471220 ATGCTGGAAA
* * *
203471230 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
203471270 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
203471310 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
203471350 TTATATCCGG
1 TTATATCCGG
203471360 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:203478236 original size:48 final size:48
Alignment explanation
Indices: 203478180--203478446 Score: 265
Period size: 48 Copynumber: 5.6 Consensus size: 48
203478170 TGAATTGCCA
* * * * *
203478180 ATGCCATGTTCTAAACATGGTCTTACATTGGCTCACATGTCGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGCCG
*
203478228 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT--ATGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGA-GGCCG
* * * * * *
203478276 ATGCCATGTCCCAGACATGGTATTACACTGGCTCTTAT-TAC-ATTGTCA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CGA-GGCCG
* * * * * *
203478324 ATGCCATGTTCCAAACATCGTCCTACACTGGCTTTCATATCGTGGCTG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGCCG
* *
203478372 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAGGCCG
*
203478420 ATGCCATGTCCCATACATGGTCTTACA
1 ATGCCATGTCCCAAACATGGTCTTACA
203478447 TTAGCGCACA
Statistics
Matches: 183, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 177 0.97
49 4 0.02
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGAGGCCG
Found at i:203478438 original size:144 final size:144
Alignment explanation
Indices: 203478173--203478446 Score: 413
Period size: 144 Copynumber: 1.9 Consensus size: 144
203478163 AAGAGGGTGA
* * * * *
203478173 ATTGCCAATGCCATGTTCTAAACATGGTCTTACATTGGCTCACATGTCGAGGCCGATGCCATGTC
1 ATTGCCAATGCCATGTTCCAAACATCGTCCTACACTGGCTCACATATCGAGGCCGATGCCATGTC
*
203478238 CCAGACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATGTCCCAGACATGGTATTACA
66 CCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATGTCCCAGACATGGTATTACA
203478303 CTGGCTCTTATTAC
131 CTGGCTCTTATTAC
* ** * * *
203478317 ATTGTCAATGCCATGTTCCAAACATCGTCCTACACTGGCTTTCATATCGTGGCTGATGCCATGTT
1 ATTGCCAATGCCATGTTCCAAACATCGTCCTACACTGGCTCACATATCGAGGCCGATGCCATGTC
* * *
203478382 CCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCATACATGGTCTTACA
66 CCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATGTCCCAGACATGGTATTACA
203478447 TTAGCGCACA
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
144 115 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (144 bp):
ATTGCCAATGCCATGTTCCAAACATCGTCCTACACTGGCTCACATATCGAGGCCGATGCCATGTC
CCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCCATGTCCCAGACATGGTATTACA
CTGGCTCTTATTAC
Found at i:203478460 original size:96 final size:96
Alignment explanation
Indices: 203478180--203478446 Score: 299
Period size: 96 Copynumber: 2.8 Consensus size: 96
203478170 TGAATTGCCA
* * * * * *
203478180 ATGCCATGTTCTAAACATGGTCTTACATTGGCTCACAT-GTCGAGGCCGATGCCATGTCCCAGAC
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCCATGTCCCAAAC
203478244 ATGGTCTTACACTGGCTCTCATAAT-ATGGCCG
65 ATGGTCTTACACTGGCTCTCAT-ATCATGGCCG
* * * * * * *
203478276 ATGCCATGTCCCAGACATGGTATTACACTGGCTCTTATTACAT-T-GTCAATGCCATGTTCCAAA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCA-TA-ATGTGGCCGATGCCATGTCCCAAA
* * * * *
203478339 CATCGTCCTACACTGGCTTTCATATCGTGGCTG
64 CATGGTCTTACACTGGCTCTCATATCATGGCCG
*
203478372 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCATACA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAAACA
203478437 TGGTCTTACA
66 TGGTCTTACA
203478447 TTAGCGCACA
Statistics
Matches: 137, Mismatches: 28, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
94 2 0.01
95 5 0.04
96 128 0.93
97 1 0.01
99 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (96 bp):
ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAAACA
TGGTCTTACACTGGCTCTCATATCATGGCCG
Found at i:203483319 original size:66 final size:68
Alignment explanation
Indices: 203483243--203483429 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
203483233 TAGTACCACT
*
203483243 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
203483305 CACG
65 CACG
203483309 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
203483374 ATCACG
63 ATCACG
203483380 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
203483430 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:203483354 original size:71 final size:71
Alignment explanation
Indices: 203483266--203483429 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
203483256 CGATTTGTCT
203483266 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
203483331 CTTTCA
66 CTTTCA
203483337 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
203483402 CTTTCA
66 CTTTCA
203483408 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
203483430 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:203483467 original size:71 final size:70
Alignment explanation
Indices: 203483266--203483463 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
203483256 CGATTTGTCT
* * *
203483266 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
203483331 CTTTCA
65 CTTTCA
* * *
203483337 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
203483402 CTTTCA
65 CTTTCA
* *
203483408 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
203483464 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:203490881 original size:66 final size:68
Alignment explanation
Indices: 203490805--203490991 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
203490795 TAGTACCACT
*
203490805 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
203490867 CACG
65 CACG
203490871 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
203490936 ATCACG
63 ATCACG
203490942 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
203490992 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:203490916 original size:71 final size:71
Alignment explanation
Indices: 203490828--203490991 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
203490818 CGATTTGTCT
203490828 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
203490893 CTTTCA
66 CTTTCA
203490899 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
203490964 CTTTCA
66 CTTTCA
203490970 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
203490992 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:203491029 original size:71 final size:70
Alignment explanation
Indices: 203490828--203491025 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
203490818 CGATTTGTCT
* * *
203490828 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
203490893 CTTTCA
65 CTTTCA
* * *
203490899 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
203490964 CTTTCA
65 CTTTCA
* *
203490970 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
203491026 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:203494592 original size:40 final size:40
Alignment explanation
Indices: 203494547--203494713 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
203494537 CGGAATATAA
203494547 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
203494587 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
203494627 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
203494667 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
203494706 CCGGATAT
1 CCGGATAT
203494714 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:203494697 original size:80 final size:79
Alignment explanation
Indices: 203494547--203494713 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
203494537 CGGAATATAA
* *
203494547 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
203494612 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
203494627 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
203494689 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
203494706 CCGGATAT
1 CCGGATAT
203494714 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:203495560 original size:17 final size:19
Alignment explanation
Indices: 203495537--203495582 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
203495527 AAGAAGCATG
203495537 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
203495555 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
203495573 AATCATGCTC
1 AATCATGCTC
203495583 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:203502594 original size:40 final size:40
Alignment explanation
Indices: 203502549--203502715 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
203502539 CGGAATATAA
203502549 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
203502589 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
203502629 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
203502669 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
203502708 CCGGATAT
1 CCGGATAT
203502716 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:203502699 original size:80 final size:79
Alignment explanation
Indices: 203502549--203502715 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
203502539 CGGAATATAA
* *
203502549 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
203502614 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
203502629 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
203502691 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
203502708 CCGGATAT
1 CCGGATAT
203502716 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:203503564 original size:17 final size:19
Alignment explanation
Indices: 203503541--203503586 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
203503531 AAGAAGCATG
203503541 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
203503559 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
203503577 AATCATGCTC
1 AATCATGCTC
203503587 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:203505046 original size:45 final size:46
Alignment explanation
Indices: 203504927--203505051 Score: 182
Period size: 46 Copynumber: 2.7 Consensus size: 46
203504917 TGGTTTAGCA
*
203504927 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
203504973 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGC-AACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
203505018 -CTCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
203505052 GGGCGGGTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
44 1 0.01
45 31 0.43
46 40 0.56
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:203508022 original size:14 final size:15
Alignment explanation
Indices: 203507973--203508022 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
203507963 GTATCTTGGG
* *
203507973 TTTCTTTATCCTAGA
1 TTTCTTTATTCTGGA
*
203507988 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
203508003 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
203508017 TTTCTT
1 TTTCTT
203508023 GTTATCTTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 8 0.27
15 22 0.73
ACGTcount: A:0.12, C:0.18, G:0.10, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:203510468 original size:46 final size:46
Alignment explanation
Indices: 203510418--203510543 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
203510408 TGGTTGAGCA
*
203510418 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
203510464 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
203510510 CCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
203510544 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:203514330 original size:40 final size:40
Alignment explanation
Indices: 203514256--203514477 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
203514246 AACCCCAGTA
* *
203514256 CCTTCGGGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
203514295 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
203514335 CCTTCGGGACTTAGCCCGGATATAGTCACTAACATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
203514375 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
203514415 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
203514455 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
203514478 CATCCGAATA
Statistics
Matches: 170, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.07
40 157 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:203522375 original size:39 final size:40
Alignment explanation
Indices: 203522204--203522422 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
203522194 AACCCAAGTA
* *
203522204 CCTTC-GGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
203522242 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
203522282 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
203522322 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA-G
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
203522361 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
203522400 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
203522423 CATCCGAATA
Statistics
Matches: 171, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
38 8 0.05
39 65 0.38
40 97 0.57
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:203529394 original size:27 final size:27
Alignment explanation
Indices: 203529361--203529939 Score: 697
Period size: 27 Copynumber: 21.6 Consensus size: 27
203529351 AAAGTACTCC
203529361 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
203529388 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
203529415 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
203529442 CGATTTATAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
203529469 CGATTTGTAAAATTACCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
203529495 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
203529522 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
203529549 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
203529576 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
203529603 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
203529630 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
203529657 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
203529684 CGATTTACAGAATTA-CGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
203529710 AG-TTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
203529736 CGATTTATA-AATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
203529761 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
203529789 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
203529816 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
203529843 CGATTTACAGTATTTCCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
203529870 CGATTTATAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
203529897 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
203529924 CAATTTACAAAATTAC
1 CGATTTACAGAATTAC
203529940 TAAAATACCC
Statistics
Matches: 483, Mismatches: 57, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
25 13 0.03
26 68 0.14
27 398 0.82
28 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:203531206 original size:25 final size:25
Alignment explanation
Indices: 203531177--203531224 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
203531167 TTATAATATG
* * *
203531177 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
203531202 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
203531225 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:203531275 original size:9 final size:9
Alignment explanation
Indices: 203531263--203531339 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
203531253 TTTGATAAAC
203531263 ATGATATGT
1 ATGATATGT
*
203531272 ATGATATGCAC
1 ATGATATG--T
203531283 ATGATATGT
1 ATGATATGT
*
203531292 ATGATATGCAC
1 ATGATATG--T
*
203531303 ATGACATGT
1 ATGATATGT
*
203531312 ATGATATGCAC
1 ATGATATG--T
203531323 ATGATATGT
1 ATGATATGT
203531332 ATGATATG
1 ATGATATG
203531340 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:203531288 original size:11 final size:11
Alignment explanation
Indices: 203531272--203531343 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
203531262 CATGATATGT
203531272 ATGATATGCAC
1 ATGATATGCAC
*
203531283 ATGATATG--T
1 ATGATATGCAC
203531292 ATGATATGCAC
1 ATGATATGCAC
* *
203531303 ATGACATG--T
1 ATGATATGCAC
203531312 ATGATATGCAC
1 ATGATATGCAC
*
203531323 ATGATATG--T
1 ATGATATGCAC
203531332 ATGATATGCAC
1 ATGATATGCAC
203531343 A
1 A
203531344 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:203531351 original size:20 final size:20
Alignment explanation
Indices: 203531261--203531343 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
203531251 ATTTTGATAA
203531261 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
203531281 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
203531301 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
203531321 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
203531341 ACA
1 ACA
203531344 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:203531428 original size:23 final size:23
Alignment explanation
Indices: 203531398--203531517 Score: 186
Period size: 23 Copynumber: 5.1 Consensus size: 23
203531388 AGGAAGTGAA
203531398 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
203531421 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
203531445 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
203531468 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
203531492 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
203531515 AAA
1 AAA
203531518 AGAGGCTAGG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 46 0.52
24 42 0.48
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:203531453 original size:24 final size:23
Alignment explanation
Indices: 203531397--203531539 Score: 189
Period size: 24 Copynumber: 6.0 Consensus size: 23
203531387 GAGGAAGTGA
203531397 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
203531420 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
203531443 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
203531467 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
203531490 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
203531515 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
203531539 A
1 A
203531540 TGATAAAGCA
Statistics
Matches: 106, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
23 43 0.41
24 52 0.49
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:203531466 original size:47 final size:47
Alignment explanation
Indices: 203531396--203531539 Score: 218
Period size: 47 Copynumber: 3.0 Consensus size: 47
203531386 GGAGGAAGTG
203531396 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
203531443 CAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
203531490 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTATGCC-CCAGTTAT
203531539 A
1 A
203531540 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
47 67 0.76
48 9 0.10
49 12 0.14
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:203531765 original size:31 final size:31
Alignment explanation
Indices: 203531730--203531793 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
203531720 CGTTTACAGT
*
203531730 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
203531761 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
203531792 AA
1 AA
203531794 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:203535221 original size:27 final size:27
Alignment explanation
Indices: 203534639--203535220 Score: 672
Period size: 27 Copynumber: 21.6 Consensus size: 27
203534629 AAAGTACTCC
203534639 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
203534666 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
203534693 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
203534720 CGATTTATAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
203534747 CGATTTGTAAAATTACCGTTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
203534774 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
203534801 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
203534828 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
***
203534855 C-AGTTTACAGAATTATTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
203534882 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
203534909 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
203534936 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
203534963 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
203534990 -TAGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
203535017 CGATTTATAAAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
203535043 CTAATTTACATAATTACCATTTTACCC-
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
203535070 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
203535097 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
203535124 CGATTTATAGTATTTCCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
203535151 CGATTTATAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
203535178 TGATTTACAGAATTACTGTTTTAGCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
203535205 CAATTTACAAAATTAC
1 CGATTTACAGAATTAC
203535221 TAAAATACCC
Statistics
Matches: 478, Mismatches: 67, Indels: 20
0.85 0.12 0.04
Matches are distributed among these distances:
26 27 0.06
27 447 0.94
28 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:203536557 original size:9 final size:9
Alignment explanation
Indices: 203536545--203536621 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
203536535 TTTGATAAAC
203536545 ATGATATGT
1 ATGATATGT
*
203536554 ATGATATGCAC
1 ATGATATG--T
203536565 ATGATATGT
1 ATGATATGT
*
203536574 ATGATATGCAC
1 ATGATATG--T
*
203536585 ATGACATGT
1 ATGATATGT
*
203536594 ATGATATGCAC
1 ATGATATG--T
203536605 ATGATATGT
1 ATGATATGT
203536614 ATGATATG
1 ATGATATG
203536622 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:203536570 original size:11 final size:11
Alignment explanation
Indices: 203536554--203536625 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
203536544 CATGATATGT
203536554 ATGATATGCAC
1 ATGATATGCAC
*
203536565 ATGATATG--T
1 ATGATATGCAC
203536574 ATGATATGCAC
1 ATGATATGCAC
* *
203536585 ATGACATG--T
1 ATGATATGCAC
203536594 ATGATATGCAC
1 ATGATATGCAC
*
203536605 ATGATATG--T
1 ATGATATGCAC
203536614 ATGATATGCAC
1 ATGATATGCAC
203536625 A
1 A
203536626 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:203536633 original size:20 final size:20
Alignment explanation
Indices: 203536543--203536625 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
203536533 ATTTTGATAA
203536543 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
203536563 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
203536583 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
203536603 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
203536623 ACA
1 ACA
203536626 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:203536711 original size:23 final size:23
Alignment explanation
Indices: 203536681--203536800 Score: 177
Period size: 23 Copynumber: 5.1 Consensus size: 23
203536671 AGGAAGTGAA
203536681 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
203536704 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
203536728 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
203536751 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
203536775 AAAGGGCTTTTTCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
203536798 AAA
1 AAA
203536801 AGAGGCTAGG
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 46 0.53
24 41 0.47
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:203536736 original size:24 final size:23
Alignment explanation
Indices: 203536680--203536822 Score: 180
Period size: 24 Copynumber: 6.0 Consensus size: 23
203536670 GAGGAAGTGA
203536680 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
203536703 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
203536726 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
203536750 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
203536773 AAAAAGGGCTTTTTCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
203536798 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
203536822 A
1 A
203536823 TGATAAAGCA
Statistics
Matches: 104, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
23 43 0.41
24 50 0.48
25 11 0.11
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:203536749 original size:47 final size:47
Alignment explanation
Indices: 203536679--203536822 Score: 209
Period size: 47 Copynumber: 3.0 Consensus size: 47
203536669 GGAGGAAGTG
203536679 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
203536726 CAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
203536773 AAAAAGGGCTTTTTCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTATGCC-CCAGTTAT
203536822 A
1 A
203536823 TGATAAAGCA
Statistics
Matches: 87, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
47 66 0.76
48 9 0.10
49 12 0.14
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:203537050 original size:31 final size:31
Alignment explanation
Indices: 203537015--203537078 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
203537005 CATTTACAGT
*
203537015 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
203537046 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
203537077 AA
1 AA
203537079 TATGAAATGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:203547170 original size:28 final size:28
Alignment explanation
Indices: 203547138--203547202 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
203547128 ATTTACTAGA
*
203547138 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
203547166 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
203547194 ATACCCCTA
1 ATACCCCTA
203547203 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:203547349 original size:28 final size:28
Alignment explanation
Indices: 203547308--203547396 Score: 112
Period size: 26 Copynumber: 3.2 Consensus size: 28
203547298 AGGAAGCGTC
203547308 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
* *
203547336 CTGGTGGCCCTGCCAC--GTTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
203547362 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
203547391 CTGGTG
1 CTGGTG
203547397 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 24 0.46
28 21 0.40
29 7 0.13
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:203552092 original size:542 final size:541
Alignment explanation
Indices: 203551071--203555814 Score: 7718
Period size: 542 Copynumber: 8.9 Consensus size: 541
203551061 GTTCAGCAAG
*
203551071 AATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
* *
203551136 ATGATGGAGGTCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
203551201 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
* *
203551266 CTAACTTGTGAAAGTTGTAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
196 CTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
*
203551331 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAGAATTATTTTTCAAGC
261 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGA-AATTATTTTACAAGC
* * * * *
203551396 CTA-GGCTAAAAGTGTAAATAAGATAAAATTTAGGGGTAAAAATTTAATTTTTGCCATAGTATGA
325 CTAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGA
203551460 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
390 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
*
203551525 CTCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTATTTAAGCTTTCCAAGCTCCATAGTA
455 CTCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
*
203551590 AGTCCATTCTTGCCCCGTTTTT
520 AGTCCGTTCTTGCCCCGTTTTT
203551612 AATGATTTTCACGATTTTT-AAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGT
1 AATGATTTTCACG-TTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGT
203551676 TATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGAT
65 TATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGAT
*
203551741 TATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGA-TTTAAATGCTAAAATGCTAAAAA
130 TATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATG--AAAATGCTAAAAA
*
203551805 AGACTAACTTGTGAAAGTTGTAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
193 AGACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTT
* *
203551870 TATAGTTATGAAAGTGGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAA
258 TATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAATTATTTTACAA
*
203551935 GCCTAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTCGACATAGTAT
323 GCCTAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTAT
* * * *
203552000 GACAAATTTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCAAAATTTTTGTCATCTTCAAC
388 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
*
203552065 CCCTCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTATTTAAGCTTTCCAAGCTCCATAG
453 CCCTCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
* *
203552130 TAAGTCCGTTCTTACCCTGTTTTT
518 TAAGTCCGTTCTTGCCCCGTTTTT
* *
203552154 AATGATTTTAACGTTTTTGAAATCCTTGTATCATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
203552219 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
203552284 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
203552349 CTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
196 CTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
*
203552414 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATAAAAATTATTTTACAAGC
261 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAAT-GAAATTATTTTACAAGC
* *
203552479 CTAGGCGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
325 CTAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGA
*
203552544 TAAAATTTAGTAATTAAATGTTTAAAAAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
390 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
* * *
203552609 CTCGGCCGAAATTTTGAAGAACACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGGTCCATAGTA
455 CTCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
203552674 AGTCCGTTCTTGCCCCGTTTTT
520 AGTCCGTTCTTGCCCCGTTTTT
*
203552696 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCACTTATTTGA-TT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
* * * *
203552760 ATGATGGA-GTCTAAGGTTTGAAACTATGTTATAAATTTGTGGTGTTTTTGATGTTTAATGGTAA
66 ATGATGAAGGTCTAGGGTTTG-AACCATGTTATAAATTTGT-GT-ATTTTGATGTTTAATGGT-A
203552824 GATTATGCATGTTTATGGTTGGAG-AA-AACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAA
127 GATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAA
* * * *
203552887 AGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGT-GGTTT
192 AAGACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTT
203552951 TTATAGTTATGAAAGTGGTTCGGCTA-GCTTAAAGTGAAAATAAATTGAATGAAAATTA-TTTAC
257 TTATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATG-AAATTATTTTAC
* * *
203553014 AAGCCTA-GGGTAAAAGTGTAAATAAGATAAAATTTAGGGGTAAAAAT-T-ATATTTTG-CGTTA
321 AAGCCTAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAAT-TTTTGAC-ATA
203553075 GTATGATAAAATTTAGTAATTAAATGTTTAAATAAAC-AAATAAAAGCCAAATTTTGGTCATCTT
384 GTATGATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTT
* *
203553139 CAA-CCCTC-GCCGAAA-TTTGAAGACCA-CATGGCTAGGG-TTTGTTTAAGCTTTCCAAGGTCA
449 CAACCCCTCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCC
* * *
203553199 ATAGCAAGTCTG-T-TTGCCCCATTTTT
514 ATAGTAAGTCCGTTCTTGCCCCGTTTTT
* *
203553225 AATGATTTCCACGTTTTTGAAATCCTTATAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
203553290 ATGATGAAGGTCTAGGGTTTGAACCAT-TTATAAATTTGTGTATTTTGATGTTTAAT-GTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
*
203553353 ATGCATGTTT-T-GTGTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTCAAAAAG
131 ATGCATGTTTATGGT-TGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCT-AAAAAA
* * *
203553416 GACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGT----A------G-----
194 GACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTT
203553466 A-A---ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAA
259 ATAGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATG-AAATTATTTTACAA
* * *
203553527 GCCTA-GGGTAAAAGTGTAAATA-GATAAAATTTAGGGG-TAAAAT-TAATTTTTGTCGTAGTAT
323 GCCTAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTAT
*
203553588 GATAAAATTTAGTAATTAAATGTTTAAAAAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
388 GATAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAAC
* *
203553653 CCCTCGGCC-AAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGGTCCATAG
453 CCCTCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAG
*
203553717 TAAGTCCGTTCTTGCCCCATTTTT
518 TAAGTCCGTTCTTGCCCCGTTTTT
203553741 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTA-TTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
203553805 ATGATGAAGGTCTA-GGTTTGAACCATGTTA-AAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
203553868 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT-AAAATGCT-AAAAAGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
* *
203553931 CTAA-TT-TAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
196 CTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
*
203553994 AGTTATGAAAGTGGTTCGGCTAGGCTT-AAGTG-AAATAAATTGAATGAAAATTATTTTAGAAG-
261 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATG-AAATTATTTTACAAGC
*
203554056 -TA-GGGT-AAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAA-TTTTGCCATAGTATGA
325 CTAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGA
* * *
203554117 TAAATTTTAGTAATTAAATGTTTAAATAAACAAAATAAAAG-CTAATTTTTGTCATCTTCAACCC
390 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
*
203554181 CTCGGCCGAAAGTTTGAAGACCACCATGGCTA-GGATTT-TTTAAGCTTTCCAAGCTCCATAGTA
455 CTCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
*
203554244 AGTCCATTCTTGCCCCGTTTTT
520 AGTCCGTTCTTGCCCCGTTTTT
203554266 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
203554331 ATGATGAAGGTCTA-GGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
203554395 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
203554460 CTAACTTGTGAAAGTTATAAAA-TTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
196 CTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
* * *
203554524 AGTTATGAAAGTGGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTAAAAGCC
261 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAATTATTTTACAAGCC
203554589 TAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-ACCATAGTATGA
326 TAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGA-CATAGTATGA
* * * * *
203554653 TAAATTTTTGTAATTAAATGTTTAAATAAAAAAAATAAAAGCAAAATTTTTGTCATCTTCAACCC
390 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
* * * *
203554718 CTCGGCCGGAAGTTTGAAGACCACTATGGCTAGGGCTTTATTTAAGCTTTCCAAGCTCCATAGTA
455 CTCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
* *
203554783 AGTCCGATCTTGCCCTGTTTTT
520 AGTCCGTTCTTGCCCCGTTTTT
* * *
203554805 AATGATTTTAACGTTTTGGAAATCCTTGTAGCATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
203554870 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
203554935 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGA-TTTCAATGAAAATGCTAAAAAAGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
*
203554999 CTAACTTGTGAAAGTTGTAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
196 CTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
* * *
203555064 AGTTATGAAAGGGGGTT-GGCTAGGCTTAAGGTGAAAATAAATTGAATGAAACTATTTTACAAGC
261 AGTTATGAAA-GTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAATTATTTTACAAGC
* *
203555128 CTAGGGATAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATATAATTTTTGACATAGTATGA
325 CTAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGA
203555193 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
390 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
* * * * * *
203555258 CTTGGCCGCAATTTTGAAGACCACCACT-GCTAGGGTTTTGTTTAAGTTTTCTAAGCTCCAGAGT
455 CTCGGCCGAAAGTTTGAAGACCACCA-TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGT
* * *
203555322 AAGTCCGTTCTTGCTCTGTTGTT
519 AAGTCCGTTCTTGCCCCGTTTTT
* *
203555345 AATGATTTTCGCGTTTTTGAAATCCTTCTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
* *
203555410 ATGATGAAGGTCTAGGGTTTGAACTATGTTATGAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
*
203555475 ATGCATGTTTATGGTTGGAGAAACAACTTCTGCTAAGTGATTTTCAATG-AAAT-CTAAAAAA-A
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
203555537 CTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
196 CTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
*
203555602 AGTTATGAAAGTGATTTC-GCTAGGCTTAAAGTGAAAATAAATTGAATGAAATTATTTTACAAGC
261 AGTTATGAAAGTG-GTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAATTATTTTACAAGC
* *
203555666 CTAGGGATAAATGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGA
325 CTAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGA
* *
203555731 TAAAATTTACTAATTAAATGTTTAAATAAACAAAACAAAAGCCAAATTTTGGTCATCTTCAACCC
390 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
*
203555796 CT-GGCCGAAATTTTGAAGA
455 CTCGGCCGAAAGTTTGAAGA
203555815 NNNNNNNNNN
Statistics
Matches: 3966, Mismatches: 153, Indels: 172
0.92 0.04 0.04
Matches are distributed among these distances:
509 67 0.02
510 80 0.02
511 75 0.02
512 17 0.00
513 22 0.01
514 69 0.02
515 51 0.01
516 102 0.03
517 2 0.00
518 1 0.00
521 1 0.00
523 3 0.00
524 6 0.00
525 130 0.03
526 127 0.03
527 231 0.06
528 42 0.01
529 99 0.02
530 107 0.03
531 74 0.02
532 25 0.01
533 12 0.00
534 11 0.00
535 44 0.01
536 86 0.02
537 113 0.03
538 291 0.07
539 185 0.05
540 595 0.15
541 381 0.10
542 866 0.22
543 26 0.01
544 25 0.01
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (541 bp):
AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
CTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAATTATTTTACAAGCC
TAGGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGAT
AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
TCGGCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
GTCCGTTCTTGCCCCGTTTTT
Found at i:203555242 original size:540 final size:540
Alignment explanation
Indices: 203553468--203555814 Score: 3883
Period size: 540 Copynumber: 4.4 Consensus size: 540
203553458 TTTAGTAGAA
203553468 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATG-AAATTATTTTACAAGCCTAG
* * *
203553533 GGTAAAAGTGTAAATA-GATAAAATTTAGGGG-TAAAAT-TAATTTTTGTCGTAGTATGATAAAA
65 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAA
*
203553595 TTTAGTAATTAAATGTTTAAAAAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
130 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
* *
203553660 CC-AAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGGTCCATAGTAAGTCC
195 CCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
*
203553724 GTTCTTGCCCCATTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
260 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
203553789 TACCATTTA-TTGAGTTATGATGAAGGTCTA-GGTTTGAACCATGTTA-AAATTTGTGTATTTTG
325 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
203553851 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
390 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
* *
203553916 -AAAATGCT-AAAAAGACTAA-TT-TAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGG
455 GAAAATGCTAAAAAAGACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGG
203553977 AAATTGTGGGTTTTTATAGTT
520 AAATTGTGGGTTTTTATAGTT
*
203553998 ATGAAAGTGGTTCGGCTAGGCTT-AAGTG-AAATAAATTGAATGAAAATTATTTTAGAAG--TAG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATG-AAATTATTTTACAAGCCTAG
* *
203554059 GGT-AAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAA-TTTTGCCATAGTATGATAAAT
65 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAA
* *
203554122 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAG-CTAATTTTTGTCATCTTCAACCCCTCGG
130 TTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGG
*
203554186 CCGAAAGTTTGAAGACCACCATGGCTA-GGATTT-TTTAAGCTTTCCAAGCTCCATAGTAAGTCC
195 CCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCC
*
203554249 ATTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
260 GTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTC
203554314 TACCATTTATTTGAGTTATGATGAAGGTCTA-GGTTTGAACCATGTTATAAATTTGTGTATTTTG
325 TACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTG
203554378 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
390 ATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAAT
203554443 GAAAATGCTAAAAAAGACTAACTTGTGAAAGTTATAAAA-TTTTCATAAAAGTGTGATTTAGTGG
455 GAAAATGCTAAAAAAGACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGG
203554507 AAATTGTGGGTTTTTATAGTT
520 AAATTGTGGGTTTTTATAGTT
* * *
203554528 ATGAAAGTGGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTAAAAGCCTAGG
1 ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTA-G
203554593 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-ACCATAGTATGATAAA
65 GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGA-CATAGTATGATAAA
* * * * *
203554657 TTTTTGTAATTAAATGTTTAAATAAAAAAAATAAAAGCAAAATTTTTGTCATCTTCAACCCCTCG
129 ATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCG
* * * *
203554722 GCCGGAAGTTTGAAGACCACTATGGCTAGGGCTTTATTTAAGCTTTCCAAGCTCCATAGTAAGTC
194 GCCGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTC
* * * * *
203554787 CGATCTTGCCCTGTTTTTAATGATTTTAACGTTTTGGAAATCCTTGTAGCATGATCTACCTATTT
259 CGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTT
203554852 CTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTT
324 CTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTT
203554917 GATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGA-TTTCAA
389 GATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAA
*
203554981 TGAAAATGCTAAAAAAGACTAACTTGTGAAAGTTGTAAAATTTTTCATAAAAGTGTGATTTAGTG
454 TGAAAATGCTAAAAAAGACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTG
203555046 GAAATTGTGGGTTTTTATAGTT
519 GAAATTGTGGGTTTTTATAGTT
* * *
203555068 ATGAAAGGGGGTT-GGCTAGGCTTAAGGTGAAAATAAATTGAATGAAACTATTTTACAAGCCTAG
1 ATGAAA-GTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAG
*
203555132 GGATAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATATAATTTTTGACATAGTATGATAAA
65 GG-TAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAA
*
203555197 ATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTTG
129 ATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCG
* * * * *
203555262 GCCGCAATTTTGAAGACCACCACT-GCTAGGGTTTTGTTTAAGTTTTCTAAGCTCCAGAGTAAGT
194 GCCGAAAGTTTGAAGACCACCA-TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT
* * * * *
203555326 CCGTTCTTGCTCTGTTGTTAATGATTTTCGCGTTTTTGAAATCCTTCTAACATGATCTACCTATT
258 CCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATT
* *
203555391 TCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACTATGTTATGAATTTGTGTATTT
323 TCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTT
*
203555456 TGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTCTGCTAAGTGATTTTCA
388 TGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCA
203555521 ATG-AAAT-CTAAAAAA-ACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGT
453 ATGAAAATGCTAAAAAAGACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGT
203555583 GGAAATTGTGGGTTTTTATAGTT
518 GGAAATTGTGGGTTTTTATAGTT
*
203555606 ATGAAAGTGATTTC-GCTAGGCTTAAAGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAG
1 ATGAAAGTG-GTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAG
*
203555670 GGATAAATGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAA
65 GG-TAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAA
* *
203555735 ATTTACTAATTAAATGTTTAAATAAACAAAACAAAAGCCAAATTTTGGTCATCTTCAACCCCT-G
129 ATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCG
*
203555799 GCCGAAATTTTGAAGA
194 GCCGAAAGTTTGAAGA
203555815 NNNNNNNNNN
Statistics
Matches: 1715, Mismatches: 72, Indels: 53
0.93 0.04 0.03
Matches are distributed among these distances:
525 113 0.07
526 91 0.05
527 162 0.09
528 40 0.02
529 16 0.01
530 92 0.05
531 31 0.02
532 14 0.01
533 2 0.00
534 4 0.00
535 39 0.02
536 53 0.03
537 69 0.04
538 254 0.15
539 176 0.10
540 544 0.32
541 15 0.01
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.36
Consensus pattern (540 bp):
ATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGG
GTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAAT
TTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGC
CGAAAGTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCG
TTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCT
ACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGA
TGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATG
AAAATGCTAAAAAAGACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGA
AATTGTGGGTTTTTATAGTT
Found at i:203566869 original size:8 final size:8
Alignment explanation
Indices: 203566856--203566894 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
203566846 ATCGGCAAAA
203566856 GCCGAAAT
1 GCCGAAAT
203566864 GCCGAAAT
1 GCCGAAAT
*
203566872 GCCGAAAA
1 GCCGAAAT
*
203566880 GCCAAAAT
1 GCCGAAAT
*
203566888 GCTGAAA
1 GCCGAAA
203566895 AGTCGAAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.44, C:0.23, G:0.23, T:0.10
Consensus pattern (8 bp):
GCCGAAAT
Found at i:203566877 original size:16 final size:16
Alignment explanation
Indices: 203566851--203566896 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
203566841 TATGAATCGG
*
203566851 CAAAA-GCCGAAATGC
1 CAAAATGCCGAAAAGC
*
203566866 CGAAATGCCGAAAAGC
1 CAAAATGCCGAAAAGC
*
203566882 CAAAATGCTGAAAAG
1 CAAAATGCCGAAAAG
203566897 TCGAAAGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 4 0.15
16 22 0.85
ACGTcount: A:0.48, C:0.22, G:0.22, T:0.09
Consensus pattern (16 bp):
CAAAATGCCGAAAAGC
Found at i:203566901 original size:24 final size:24
Alignment explanation
Indices: 203566852--203566902 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
203566842 ATGAATCGGC
* *
203566852 AAAAGCCGAAATGCCGAAATGCCG
1 AAAAGCCAAAATGCCGAAAAGCCG
* *
203566876 AAAAGCCAAAATGCTGAAAAGTCG
1 AAAAGCCAAAATGCCGAAAAGCCG
203566900 AAA
1 AAA
203566903 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.49, C:0.20, G:0.22, T:0.10
Consensus pattern (24 bp):
AAAAGCCAAAATGCCGAAAAGCCG
Found at i:203567170 original size:29 final size:29
Alignment explanation
Indices: 203567136--203567226 Score: 130
Period size: 29 Copynumber: 3.2 Consensus size: 29
203567126 GCACCTAACA
203567136 GGCCATATAAATGTGATTTGGGCCTAATG
1 GGCCATATAAATGTGATTTGGGCCTAATG
* *
203567165 GGCCATATATAGGTGATTTGGGCCTAATG
1 GGCCATATAAATGTGATTTGGGCCTAATG
* * *
203567194 GGCCATATGAATATGA-TTGGGCTTAATG
1 GGCCATATAAATGTGATTTGGGCCTAATG
203567222 GGCCA
1 GGCCA
203567227 GATACAGGTA
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 16 0.29
29 39 0.71
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
GGCCATATAAATGTGATTTGGGCCTAATG
Found at i:203568269 original size:21 final size:21
Alignment explanation
Indices: 203568231--203568278 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
203568221 GTAACTGAAA
**
203568231 GGTTTCTTTTTTAATTAATTAG
1 GGTTTCTTTTTT-ATTAAGAAG
203568253 GGTTTCTTTTATT-TTAAGAAG
1 GGTTTCTTTT-TTATTAAGAAG
203568274 GGTTT
1 GGTTT
203568279 TCAATGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 11 0.48
22 10 0.43
23 2 0.09
ACGTcount: A:0.21, C:0.04, G:0.19, T:0.56
Consensus pattern (21 bp):
GGTTTCTTTTTTATTAAGAAG
Found at i:203575550 original size:16 final size:16
Alignment explanation
Indices: 203575526--203575556 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
203575516 AGAATGAAAT
*
203575526 AAAATTAAAATAAAAG
1 AAAAATAAAATAAAAG
203575542 AAAAATAAAATAAAA
1 AAAAATAAAATAAAA
203575557 AGTAGTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATAAAAG
Found at i:203575557 original size:11 final size:11
Alignment explanation
Indices: 203575522--203575557 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
203575512 CCTAAGAATG
*
203575522 AAATAAAATTA
1 AAATAAAATAA
*
203575533 AAATAAAAGAA
1 AAATAAAATAA
203575544 AAATAAAATAA
1 AAATAAAATAA
203575555 AAA
1 AAA
203575558 GTAGTTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:203575582 original size:14 final size:13
Alignment explanation
Indices: 203575565--203575604 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
203575555 AAAGTAGTTT
203575565 TAAAAAGATAAAAA
1 TAAAAA-ATAAAAA
203575579 TAAAAACATAAAAA
1 TAAAAA-ATAAAAA
*
203575593 TAATAAATAAAA
1 TAAAAAATAAAA
203575605 GTCTTTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.17
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:203579004 original size:18 final size:18
Alignment explanation
Indices: 203578981--203579015 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
203578971 ACATAGTGTG
203578981 TAGAGCAGGATTCTGATC
1 TAGAGCAGGATTCTGATC
203578999 TAGAGCAGGATTCTGAT
1 TAGAGCAGGATTCTGAT
203579016 TTACTGGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (18 bp):
TAGAGCAGGATTCTGATC
Found at i:203582209 original size:40 final size:40
Alignment explanation
Indices: 203582103--203582286 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
203582093 TGCTGGAAAT
* * * * * **
203582103 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
203582143 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
203582183 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
203582221 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
203582262 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
203582287 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:203590315 original size:40 final size:40
Alignment explanation
Indices: 203590260--203590517 Score: 324
Period size: 40 Copynumber: 6.5 Consensus size: 40
203590250 TGGATGATAA
* ** *
203590260 CCGGGCTAAGTCCCGAAGGCATTTGCGTTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
203590300 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
203590340 CTGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
203590380 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * ** *
203590420 CTGGGCTAAGTTCTAAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
203590460 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
203590499 CCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
203590518 TACTTGGCTT
Statistics
Matches: 192, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
39 18 0.09
40 174 0.91
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:203592592 original size:39 final size:39
Alignment explanation
Indices: 203592538--203592690 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
203592528 GAATGTTCGA
*
203592538 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
203592577 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
203592616 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
203592655 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
203592691 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:203592706 original size:40 final size:39
Alignment explanation
Indices: 203592539--203592720 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
203592529 AATGTTCGAG
* *
203592539 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
203592578 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
203592617 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
203592656 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
203592696 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
203592721 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:203600678 original size:39 final size:39
Alignment explanation
Indices: 203600624--203600776 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
203600614 GAATGTTCGA
*
203600624 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
203600663 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
203600702 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
203600741 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
203600777 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:203600792 original size:40 final size:39
Alignment explanation
Indices: 203600625--203600806 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
203600615 AATGTTCGAG
* *
203600625 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
203600664 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
203600703 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
203600742 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
203600782 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
203600807 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:203609135 original size:13 final size:13
Alignment explanation
Indices: 203609119--203609151 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
203609109 TTTGATTAAA
*
203609119 TTAGTTAATTAGT
1 TTAGATAATTAGT
203609132 TTAGATAATTAGT
1 TTAGATAATTAGT
203609145 TTA-ATAA
1 TTAGATAA
203609152 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:203612563 original size:80 final size:80
Alignment explanation
Indices: 203612479--203612627 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
203612469 TATGGTAACC
* * * *
203612479 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
203612543 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
203612559 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
203612624 CCGG
66 CCGG
203612628 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:203612569 original size:40 final size:38
Alignment explanation
Indices: 203612520--203612627 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
203612510 ATCACGATTT
*
203612520 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
203612560 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
203612600 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
203612628 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:203626645 original size:40 final size:40
Alignment explanation
Indices: 203626581--203626723 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 40
203626571 GCCTACTGGA
* * * *
203626581 CTTAACCCGGATATCACGATTTGCACAAATGCCTTCGGGT
1 CTTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGT
* *
203626621 CTTAGCCCGGATTTAACAACTTGCACGAATGCCTTCGGGT
1 CTTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGT
** * * *
203626661 CTTAGCCCGGATATAATTACTAGCATAAATGTCC-TC-GGA
1 CTTAGCCCGGATATAACAACTTGCACAAATG-CCTTCGGGT
* *
203626700 CTTAGCCCGGATATCACAATTTGC
1 CTTAGCCCGGATATAACAACTTGC
203626724 TCATGCACAC
Statistics
Matches: 84, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
39 21 0.25
40 61 0.73
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (40 bp):
CTTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGT
Found at i:203628840 original size:49 final size:50
Alignment explanation
Indices: 203628760--203629001 Score: 292
Period size: 49 Copynumber: 4.9 Consensus size: 50
203628750 ATCTATTGTG
*
203628760 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
203628810 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
203628860 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
203628910 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACC-GAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATT
** * *
203628960 -GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
203629002 AATAGCCTTG
Statistics
Matches: 162, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
49 78 0.48
50 46 0.28
51 38 0.23
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:203630782 original size:29 final size:28
Alignment explanation
Indices: 203630744--203630844 Score: 130
Period size: 29 Copynumber: 3.5 Consensus size: 28
203630734 TGAGAGATTA
*
203630744 GCACTGAGTGTGCGAGCTTGAAATGCATG
1 GCACTAAGTGTGCGAG-TTGAAATGCATG
203630773 GCACTAAGTGTGCGAGGTTGAAATGCATG
1 GCACTAAGTGTGCGA-GTTGAAATGCATG
* * **
203630802 GCACTAAGTGTGTGAGTTTAAAGTATATG
1 GCACTAAGTGTGCGAGTTGAAA-TGCATG
203630831 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
203630845 CGGCTGATTA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
28 6 0.09
29 57 0.89
30 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.27
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTGAAATGCATG
Found at i:203634245 original size:27 final size:27
Alignment explanation
Indices: 203634214--203634280 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
203634204 TTCAACACCC
* *
203634214 AGGGGTATTTTGGCCATTTTCACCCTT
1 AGGGGCATTTTGACCATTTTCACCCTT
* *
203634241 AGGGGCGTTTTGATCATTTTCACCCTT
1 AGGGGCATTTTGACCATTTTCACCCTT
*
203634268 AGGGGCGTTTTGA
1 AGGGGCATTTTGA
203634281 TAATTTTCCC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.15, C:0.19, G:0.27, T:0.39
Consensus pattern (27 bp):
AGGGGCATTTTGACCATTTTCACCCTT
Found at i:203634281 original size:27 final size:27
Alignment explanation
Indices: 203634228--203634288 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
203634218 GTATTTTGGC
203634228 CATTTTCACCCTTAGGGGCGTTTTGAT
1 CATTTTCACCCTTAGGGGCGTTTTGAT
203634255 CATTTTCACCCTTAGGGGCGTTTTGAT
1 CATTTTCACCCTTAGGGGCGTTTTGAT
*
203634282 AATTTTC
1 CATTTTC
203634289 CCTTAATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.16, C:0.21, G:0.20, T:0.43
Consensus pattern (27 bp):
CATTTTCACCCTTAGGGGCGTTTTGAT
Found at i:203636048 original size:29 final size:28
Alignment explanation
Indices: 203636002--203636115 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 28
203635992 TACCTGTATC
* *
203636002 TGGCCCATTA-ACCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATT-ATA
* * *
203636029 GGGCCTATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACAT-TATA
*
203636058 TGGCCCATTAGGCCGAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACA-TTATA
* *
203636087 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATT-ATA
203636115 T
1 T
203636116 TCATGCTCAC
Statistics
Matches: 70, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
27 10 0.14
28 13 0.19
29 45 0.64
30 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCACATTATA
Found at i:203638361 original size:18 final size:17
Alignment explanation
Indices: 203638338--203638371 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
203638328 GATATGGTTT
203638338 AATATGCAAATGTGTATG
1 AATATGCAAAT-TGTATG
203638356 AATATGCAAATTGTAT
1 AATATGCAAATTGTAT
203638372 TATTTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.41, C:0.06, G:0.18, T:0.35
Consensus pattern (17 bp):
AATATGCAAATTGTATG
Found at i:203641260 original size:46 final size:46
Alignment explanation
Indices: 203641205--203641385 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
203641195 TAGGATGGTT
203641205 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
203641251 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
203641297 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
203641344 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
203641386 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:203641366 original size:93 final size:93
Alignment explanation
Indices: 203641207--203641377 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
203641197 GGATGGTTGA
* *
203641207 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
203641272 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
203641300 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
203641365 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
203641378 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:203644372 original size:15 final size:15
Alignment explanation
Indices: 203644333--203644411 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
203644323 GTATCTTGGG
*
203644333 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
203644348 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
203644363 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
203644377 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
203644392 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
203644406 TTTCTT
1 TTTCTT
203644412 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:203644396 original size:29 final size:29
Alignment explanation
Indices: 203644324--203644410 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
203644314 CATAGTATCG
* * * *
203644324 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
203644354 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
203644383 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
203644411 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:203646368 original size:46 final size:46
Alignment explanation
Indices: 203646313--203646493 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
203646303 TAGGATGGTT
203646313 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
203646359 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
203646405 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
203646452 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
203646494 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:203646474 original size:93 final size:93
Alignment explanation
Indices: 203646315--203646485 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
203646305 GGATGGTTGA
* *
203646315 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
203646380 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
203646408 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
203646473 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
203646486 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:203649475 original size:15 final size:15
Alignment explanation
Indices: 203649436--203649514 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
203649426 GTATCTTGGG
*
203649436 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
203649451 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
203649466 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
203649480 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
203649495 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
203649509 TTTCTT
1 TTTCTT
203649515 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:203649499 original size:29 final size:29
Alignment explanation
Indices: 203649427--203649513 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
203649417 CATAGTATCG
* * * *
203649427 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
203649457 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
203649486 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
203649514 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:203653707 original size:40 final size:39
Alignment explanation
Indices: 203653650--203653834 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
203653640 ATTAAATGAT
* * *
203653650 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
203653690 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
203653730 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
203653770 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
203653810 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
203653835 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:203653786 original size:80 final size:80
Alignment explanation
Indices: 203653649--203653855 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
203653639 AATTAAATGA
* * ** * *
203653649 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
203653714 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
203653727 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
203653792 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
203653809 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
203653856 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:203653840 original size:40 final size:39
Alignment explanation
Indices: 203653648--203653855 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
203653638 CAATTAAATG
* * ** *
203653648 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
203653688 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
203653728 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
203653768 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
203653808 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
203653848 ATATCCGG
1 ATATCCGG
203653856 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:203661675 original size:40 final size:39
Alignment explanation
Indices: 203661618--203661822 Score: 223
Period size: 40 Copynumber: 5.2 Consensus size: 39
203661608 ATTAAATGAT
* * * *
203661618 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
* * * *
203661658 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TTAA
*
203661698 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTTAA
* **
203661738 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
* * *
203661778 ATCC-GGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
203661817 ATCCGG
1 ATCCGG
203661823 TTGTATTCCG
Statistics
Matches: 141, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 36 0.26
40 103 0.73
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTTAA
Found at i:203661754 original size:80 final size:80
Alignment explanation
Indices: 203661617--203661822 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
203661607 AATTAAATGA
* * ** * *
203661617 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
203661682 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* *
203661695 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* *
203661760 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* * *
203661777 TATCC-GGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
203661823 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 38 0.35
80 68 0.62
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:203665669 original size:20 final size:20
Alignment explanation
Indices: 203665644--203665689 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
203665634 CAGAAAATGA
203665644 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
203665664 TTTCT-GAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
203665683 TTTCTGG
1 TTTCTGG
203665690 TGTTTGGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:203666148 original size:46 final size:46
Alignment explanation
Indices: 203666078--203666199 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 46
203666068 AATAATATTA
* * *
203666078 TCCAAATGCATAATTAGTAGTACACCACATGATAACAACAACACTG
1 TCCAAGTGCATAACTAGTATTACACCACATGATAACAACAACACTG
* * * *
203666124 TCCAAGTGCATAACTAATATTACACCACATGATTACAACAGCATTG
1 TCCAAGTGCATAACTAGTATTACACCACATGATAACAACAACACTG
203666170 TCCAAGTGCATAACTAGTATTACACCACAT
1 TCCAAGTGCATAACTAGTATTACACCACAT
203666200 TAAAAGTATC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.40, C:0.25, G:0.11, T:0.25
Consensus pattern (46 bp):
TCCAAGTGCATAACTAGTATTACACCACATGATAACAACAACACTG
Found at i:203668765 original size:15 final size:15
Alignment explanation
Indices: 203668745--203668784 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
203668735 TTCTCAAGCA
*
203668745 ATGACTAAAGTTACT
1 ATGACTAAAGTTACC
203668760 ATGACTAAAGTTACC
1 ATGACTAAAGTTACC
*
203668775 ATGATTAAAG
1 ATGACTAAAG
203668785 GGAATGGAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (15 bp):
ATGACTAAAGTTACC
Found at i:203672473 original size:31 final size:31
Alignment explanation
Indices: 203672436--203672498 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
203672426 GGAGGTGGAA
**
203672436 AAAGTTGAAGAATTGAAGAAAAAAAAGGCTT
1 AAAGTTGAAGAACGGAAGAAAAAAAAGGCTT
203672467 AAAGTTGAAGAACGGAAGAAAAAAAAGGCTT
1 AAAGTTGAAGAACGGAAGAAAAAAAAGGCTT
203672498 A
1 A
203672499 CCTGGATGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.56, C:0.05, G:0.24, T:0.16
Consensus pattern (31 bp):
AAAGTTGAAGAACGGAAGAAAAAAAAGGCTT
Found at i:203673729 original size:40 final size:40
Alignment explanation
Indices: 203673662--203673829 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
203673652 AAATTGAATG
* * * * *
203673662 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
203673702 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
203673742 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
203673782 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
203673822 ATATCCGG
1 ATATCCGG
203673830 TTATATTCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.03
40 99 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Done.