Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 649 of 770
Found at i:204006829 original size:44 final size:44
Alignment explanation
Indices: 204006781--204006927 Score: 160
Period size: 44 Copynumber: 3.4 Consensus size: 44
204006771 TGATATATAT
204006781 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAG
* *
204006825 TTATGTAAATTATGATA--TA---AAATATATTTAAGTATTATGTAAG
1 TTATGTAAATTAT-ATATTTATCTAAGT-TATATAAG--TTATGTAAG
* * *
204006868 TTATGTAAGTTATATATTTGTCTAAGTTATATAAGTTATGTACG
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAG
* *
204006912 TTCTGTAAGTTATATA
1 TTATGTAAATTATATA
204006928 AATTATGATA
Statistics
Matches: 86, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
40 3 0.03
41 7 0.08
42 3 0.03
43 23 0.27
44 37 0.43
45 3 0.03
46 7 0.08
47 3 0.03
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (44 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTATGTAAG
Found at i:204006883 original size:87 final size:90
Alignment explanation
Indices: 204006781--204006965 Score: 250
Period size: 96 Copynumber: 2.0 Consensus size: 90
204006771 TGATATATAT
*
204006781 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TA-TGTAAGTTATGTAAATTATGATAT
1 TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTACTGTAAGTTATATAAATTATGATAT
204006843 AAAATATATTTAAGTATTATGTAAG
66 AAAATATATTTAAGTATTATGTAAG
* *
204006868 TTATGTAAGTTATATATTTGTCTAAGTTATATAAGTTATGTACGTTCTGTAAGTTATATAAATTA
1 TTATGTAAATTATATATTTATCTAAGTTATATAAG-T-TGTA----CTGTAAGTTATATAAATTA
* *
204006933 TGATATCAAATATATTTATGTATTATGTAAG
60 TGATATAAAATATATTTAAGTATTATGTAAG
204006964 TT
1 TT
204006966 TTTTATTTCA
Statistics
Matches: 84, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
87 33 0.39
90 1 0.01
91 2 0.02
96 48 0.57
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (90 bp):
TTATGTAAATTATATATTTATCTAAGTTATATAAGTTGTACTGTAAGTTATATAAATTATGATAT
AAAATATATTTAAGTATTATGTAAG
Found at i:204006952 original size:114 final size:114
Alignment explanation
Indices: 204006721--204006934 Score: 254
Period size: 114 Copynumber: 1.9 Consensus size: 114
204006711 ACTAGTTATG
* * * *
204006721 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
* * * **
204006786 TAAATTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
66 TAAATTATATAGTTATCTAAGTTATATAAATTATGTAAGTCAAATAAAT
*
204006835 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATATTTG-TCTA-AGTTA
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATA--TGATATATAGTTA
* * * *
204006897 TATAAGTTATGTACGTTCTGTAAGTTATATAAATTATG
64 TATAAATTATATA-GTTATCTAAGTTATATAAATTATG
204006935 ATATCAAATA
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
113 17 0.20
114 67 0.78
115 2 0.02
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.47
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATGATATGATATATAGTTATA
TAAATTATATAGTTATCTAAGTTATATAAATTATGTAAGTCAAATAAAT
Found at i:204007059 original size:15 final size:15
Alignment explanation
Indices: 204007039--204007094 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
204007029 AAGTAGCGGG
204007039 ATTAAATAATATTTA
1 ATTAAATAATATTTA
204007054 ATTAAATAATATTT-
1 ATTAAATAATATTTA
204007068 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
204007083 ATTAAGTAATAT
1 ATTAAATAATAT
204007095 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:204008112 original size:356 final size:358
Alignment explanation
Indices: 204007304--204008183 Score: 1710
Period size: 356 Copynumber: 2.5 Consensus size: 358
204007294 ATAAAACGGA
*
204007304 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACATCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
204007369 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
204007434 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
204007499 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
204007564 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
261 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
204007629 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
326 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
204007662 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
*
204007727 CTCGATATAAGGCAACCCGTCAAGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
204007792 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
204007857 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGC-AAAAAATAGTAATTTGAATATAA
196 ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
204007921 TAATAT-AAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
261 TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
204007985 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
326 ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
204008018 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
1 GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
204008083 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
66 CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
* *
204008148 AAGGTCGGAGAGAAGGTCATCCATTGTTGTAATTTT
131 AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTT
204008184 AATGGACAAG
Statistics
Matches: 517, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
356 254 0.49
357 29 0.06
358 234 0.45
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (358 bp):
GAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAG
CTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAT
AAGGTTGGAGAGAAGGTCAGCCATTGTTGTAATTTTGATAAAAATTAGTTATAACTTTTAAAGAC
ATTTAAAAATATTAAATATTAAAATCAAACATTATTAATGCAAAAAAATAGTAATTTGAATATAA
TAATATAAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAA
ATGAGCTCGATAGAACTTTTTTCAAGTCTTTTT
Found at i:204008427 original size:15 final size:15
Alignment explanation
Indices: 204008407--204008435 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
204008397 AGAATTTTGA
204008407 AATAAAACGTACCTT
1 AATAAAACGTACCTT
204008422 AATAAAACGTACCT
1 AATAAAACGTACCT
204008436 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:204008948 original size:183 final size:183
Alignment explanation
Indices: 204008640--204009005 Score: 705
Period size: 183 Copynumber: 2.0 Consensus size: 183
204008630 AGAACAGATC
204008640 TAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATC
1 TAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATC
204008705 AGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGC
66 AGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGC
*
204008770 AGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATATAGACACATG
131 AGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATATAGACACATG
*
204008823 TAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTATATC
1 TAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATC
204008888 AGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGC
66 AGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGC
*
204008953 AGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACACATG
131 AGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATATAGACACATG
204009006 GAACTATATC
Statistics
Matches: 180, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 180 1.00
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (183 bp):
TAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATC
AGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGC
AGGAAGCAGTAACTGAAACACATACAACATTAATTCACTAATATAGACACATG
Found at i:204011669 original size:26 final size:27
Alignment explanation
Indices: 204011640--204011697 Score: 93
Period size: 25 Copynumber: 2.2 Consensus size: 27
204011630 ACTAGGGTAA
204011640 AAATTTTAGGGGAGAAGAAGTT-GGGG
1 AAATTTTAGGGGAGAAGAAGTTGGGGG
*
204011666 AAA-TTTGGGGGAGAAGAAGTTGGGGG
1 AAATTTTAGGGGAGAAGAAGTTGGGGG
204011692 AAATTT
1 AAATTT
204011698 GGGGGAAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 17 0.59
26 10 0.34
27 2 0.07
ACGTcount: A:0.34, C:0.00, G:0.41, T:0.24
Consensus pattern (27 bp):
AAATTTTAGGGGAGAAGAAGTTGGGGG
Found at i:204011678 original size:25 final size:26
Alignment explanation
Indices: 204011648--204011703 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
204011638 AAAAATTTTA
204011648 GGGGAGAAGAAGTT-GGGGAAATTTG
1 GGGGAGAAGAAGTTGGGGGAAATTTG
204011673 GGGGAGAAGAAGTTGGGGGAAATTTG
1 GGGGAGAAGAAGTTGGGGGAAATTTG
204011699 GGGGA
1 GGGGA
204011704 AATCGGGGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 14 0.47
26 16 0.53
ACGTcount: A:0.30, C:0.00, G:0.52, T:0.18
Consensus pattern (26 bp):
GGGGAGAAGAAGTTGGGGGAAATTTG
Found at i:204012016 original size:28 final size:28
Alignment explanation
Indices: 204011984--204012041 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
204011974 AATCAAAACT
*
204011984 CTAT-ACCTTAAACCATTAAACTATATCC
1 CTATAACCTTAAACC-CTAAACTATATCC
* *
204012012 CTATAACCTTAATCCCTAAAGTATATCC
1 CTATAACCTTAAACCCTAAACTATATCC
204012040 CT
1 CT
204012042 TAAACCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (28 bp):
CTATAACCTTAAACCCTAAACTATATCC
Found at i:204012042 original size:21 final size:21
Alignment explanation
Indices: 204012018--204012061 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
204012008 ATCCCTATAA
* *
204012018 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCCTAAACTATATC
204012039 CCTTAAACCCTAAACTATATC
1 CCTTAAACCCTAAACTATATC
204012060 CC
1 CC
204012062 CTAACCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.30
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:204012321 original size:21 final size:21
Alignment explanation
Indices: 204012297--204012341 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
204012287 CCCTAACCCC
* *
204012297 TAAACCCTAACCCTTAAATCA
1 TAAACCCCAACCCTTAAACCA
204012318 TAAACCCCAACCCTTAAACCA
1 TAAACCCCAACCCTTAAACCA
204012339 TAA
1 TAA
204012342 TGCATAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (21 bp):
TAAACCCCAACCCTTAAACCA
Found at i:204012472 original size:41 final size:41
Alignment explanation
Indices: 204012415--204012746 Score: 422
Period size: 41 Copynumber: 8.1 Consensus size: 41
204012405 AACCCTAAAC
204012415 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* **
204012456 TTTTTAGCGGCGTTTTACCAAAACCGCCGCTAATGCTCCGA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* * * *
204012497 TTTTTAGCGGCGCTTTACCAAAAGCGCTGCTATTGCT-TCGA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-TA
* * * * *
204012538 TTTTTAGTGGCGTTTTACAAAAAGCGCCACTATTGCT-TCGA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-TA
204012579 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
*
204012620 TTTTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
* * *
204012661 TTTTTAGCAGCGTTTTACCAAAAGCGCCGCTATTGCTC-TG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
*** *
204012701 TTTTTAGCGGCGTTTTGGTAAAA-CGCCGCTATTGCTC-TA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
204012740 TGTTTTA
1 T-TTTTA
204012747 CAATTTTTTT
Statistics
Matches: 260, Mismatches: 28, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
39 16 0.06
40 25 0.10
41 218 0.84
42 1 0.00
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.35
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTA
Found at i:204013631 original size:2 final size:2
Alignment explanation
Indices: 204013624--204013651 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
204013614 CTCCAATGCC
204013624 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
204013652 GGGCTTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:204019651 original size:39 final size:40
Alignment explanation
Indices: 204019543--204019716 Score: 190
Period size: 40 Copynumber: 4.3 Consensus size: 40
204019533 CGAATGGTAT
* * *
204019543 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
204019584 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
204019624 CCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * * *
204019663 CCGGGCTAATTCCCGAAGGCAATTGTGTGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
204019703 CCGGGC-AATGTCCC
1 CCGGGCTAA-GTCCC
204019717 AAAGACAATC
Statistics
Matches: 113, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 36 0.32
40 51 0.45
41 26 0.23
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:204019705 original size:79 final size:81
Alignment explanation
Indices: 204019543--204019716 Score: 192
Period size: 79 Copynumber: 2.2 Consensus size: 81
204019533 CGAATGGTAT
* * * *
204019543 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAACCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATT
* *
204019608 GTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * * * *
204019624 CCGGGTTAAGT-CCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATT
* * *
204019687 GTGTGAATCACTATAA
66 GTGCGAATCACCAAAA
204019703 CCGGGC-AATGTCCC
1 CCGGGCTAA-GTCCC
204019717 AAAGACAATC
Statistics
Matches: 76, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
78 2 0.03
79 48 0.63
80 16 0.21
81 10 0.13
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:204027682 original size:40 final size:40
Alignment explanation
Indices: 204027584--204027764 Score: 213
Period size: 40 Copynumber: 4.5 Consensus size: 40
204027574 TTCGAATGGT
* * *
204027584 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
204027625 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
204027665 AACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
204027705 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
204027746 A-CCGGGC-AATGTCCCGAAG
1 ATCCGGGCTAA-GTCCCGAAG
204027765 ACAATCGAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
39 2 0.02
40 90 0.74
41 30 0.25
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:204027789 original size:80 final size:80
Alignment explanation
Indices: 204027620--204027790 Score: 191
Period size: 80 Copynumber: 2.1 Consensus size: 80
204027610 GTGCTAAGTG
* * * * *
204027620 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
* * * *
204027685 GCATTCGTGCGAGTT
66 ACAATCGAGCGAGTC
* * *
204027700 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAA
1 ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAA
*
204027764 GACAATCGAGCTAGTC
65 GACAATCGAGCGAGTC
* *
204027780 GCTATATCCGG
1 ACTAAATCCGG
204027791 TTAAATTCCG
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
79 2 0.03
80 73 0.97
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (80 bp):
ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:204039980 original size:40 final size:39
Alignment explanation
Indices: 204039921--204040050 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
204039911 CGGGACTTTA
* *
204039921 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAG
* *
204039961 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAG
* *
204040001 CCCGGATATAGCAC-TGCAGCACATTGCCTTCGGGTCTTAG
1 CCCGGATATAACACTTGCA-CA-AATGCCTTCGGGTCTTAG
204040041 CCCGGATATA
1 CCCGGATATA
204040051 GCTACCATTG
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
38 4 0.05
39 3 0.04
40 72 0.91
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
CCCGGATATAACACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:204040051 original size:40 final size:39
Alignment explanation
Indices: 204039937--204040082 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 39
204039927 TATCACGATT
* * *
204039937 TGCACA-AATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TGCACACATTGCCTTCGGGTCTTAGCCCGGATATAGC-AC
204039976 TTGCACGA-A-TGCCTTCGGGTCTTAGCCCGGATATAGCAC
1 -TGCAC-ACATTGCCTTCGGGTCTTAGCCCGGATATAGCAC
204040015 TGCAGCACATTGCCTTCGGGTCTTAGCCCGGATATAG--C
1 TGCA-CACATTGCCTTCGGGTCTTAGCCCGGATATAGCAC
*
204040053 T--AC-CATTGCCTTCGGGTCTTAACCCGGATA
1 TGCACACATTGCCTTCGGGTCTTAGCCCGGATA
204040083 AAATTTCAGC
Statistics
Matches: 99, Mismatches: 3, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
34 26 0.26
35 1 0.01
36 1 0.01
38 7 0.07
39 4 0.04
40 58 0.59
41 2 0.02
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (39 bp):
TGCACACATTGCCTTCGGGTCTTAGCCCGGATATAGCAC
Found at i:204040065 original size:34 final size:38
Alignment explanation
Indices: 204039945--204040122 Score: 161
Period size: 40 Copynumber: 4.7 Consensus size: 38
204039935 TTTGCACAAA
* * * *
204039945 TGCCTTCGGGTCTTAGCCCGGATTTA-ACAACTTGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAGAC-TC-AGCAC-AT
204039985 TGCCTTCGGGTCTTAGCCCGGATATAGCACTGCAGCACAT
1 TGCCTTCGGGTCTTAGCCCGGATATAG-ACT-CAGCACAT
204040025 TGCCTTCGGGTCTTAGCCCGGATATAG-CT-A-C-CAT
1 TGCCTTCGGGTCTTAGCCCGGATATAGACTCAGCACAT
* * * *
204040059 TGCCTTCGGGTCTTAACCCGGATA-AAATTTCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAGA-CTCAGCA-CAT
* *
204040098 TGTCTTCGGGGCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
204040123 CATTCAATTT
Statistics
Matches: 117, Mismatches: 11, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
33 1 0.01
34 26 0.22
35 2 0.02
36 2 0.02
37 1 0.01
38 2 0.02
39 23 0.20
40 53 0.45
41 4 0.03
42 3 0.03
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.29
Consensus pattern (38 bp):
TGCCTTCGGGTCTTAGCCCGGATATAGACTCAGCACAT
Found at i:204042837 original size:27 final size:27
Alignment explanation
Indices: 204042737--204042820 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
204042727 GGGCATATTC
* *
204042737 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
204042764 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
204042791 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
204042818 GTC
1 GTC
204042821 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:204042912 original size:27 final size:27
Alignment explanation
Indices: 204042880--204043096 Score: 190
Period size: 27 Copynumber: 8.0 Consensus size: 27
204042870 TCGTAAATCA
* *
204042880 ACAAACCAAAGGTATTTTAGTAATTTT
1 ACAAACCAAGGGTATTTTGGTAATTTT
** * *
204042907 GTAAACCAATGGTATTTCT-ATAATTTTT
1 ACAAACCAAGGGTATTT-TGGTAA-TTTT
* *
204042935 A-ATAAGTCAAGGGTATTTCT-GTAACTTT
1 ACA-AA-CCAAGGGTATTT-TGGTAATTTT
** * *
204042963 GTAAATCAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTTGGTAATTTT
** * *
204042990 ACAAA-TTAGGGTATTTCGGTAATTTC
1 ACAAACCAAGGGTATTTTGGTAATTTT
204043016 ACAAACCAAGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTTGGTAATTTT
* *
204043043 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTTGGTAATTTT
*
204043070 ACAAACCAAGGGTATTTTAGTAATTTT
1 ACAAACCAAGGGTATTTTGGTAATTTT
204043097 GTAAATCGAG
Statistics
Matches: 155, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
26 22 0.14
27 105 0.68
28 12 0.08
29 16 0.10
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
ACAAACCAAGGGTATTTTGGTAATTTT
Found at i:204043108 original size:27 final size:27
Alignment explanation
Indices: 204042890--204043137 Score: 162
Period size: 27 Copynumber: 9.1 Consensus size: 27
204042880 ACAAACCAAA
* * *
204042890 GGTATTTTAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
204042917 GGTATTTCTA-TAATTTTTAATAAGTCAAG
1 GGTATTT-TAGTAA-TTTT-ATAAATCAAG
* * *
204042946 GGTATTTCT-GTAACTTTGTAAATCAGG
1 GGTATTT-TAGTAATTTTATAAATCAAG
* * *
204042973 GGTATTTTGGTAATTTTACAAAT-TAG
1 GGTATTTTAGTAATTTTATAAATCAAG
** * * *
204042999 GGTATTTCGGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
204043026 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* * *
204043053 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* *
204043080 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
**** * *
204043107 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
204043134 GGTA
1 GGTA
204043138 AAACAATAAT
Statistics
Matches: 181, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
26 23 0.13
27 130 0.72
28 10 0.06
29 18 0.10
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:204043120 original size:54 final size:54
Alignment explanation
Indices: 204042972--204043175 Score: 151
Period size: 54 Copynumber: 3.8 Consensus size: 54
204042962 TGTAAATCAG
* * * *** *
204042972 GGGTATTTTGGTAATTTTACAAAT-TAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTACAAACCAA
* * * ****
204043025 GGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTAGTAATTTTATAAATCGA-GGGTAAAACGGTAATTTTACAAACCAA
* * * ** *
204043079 GGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAA
1 GGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTACAAACCAA
**** * *
204043133 GGGTAAAACAATAATTCTATAAATCGAGGGTAAAACGGTAATT
1 GGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGGTAATT
204043176 CTGTAAATCG
Statistics
Matches: 125, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
53 25 0.20
54 98 0.78
55 2 0.02
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGGTAATTTTACAAACCAA
Found at i:204043138 original size:27 final size:27
Alignment explanation
Indices: 204043088--204043291 Score: 229
Period size: 27 Copynumber: 7.6 Consensus size: 27
204043078 AGGGTATTTT
*
204043088 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
204043115 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
204043142 AATAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
204043169 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
204043196 GGTAATTCTATAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
204043223 -GATAA-TCATGTAAATC-AGGGGTAAAAC
1 AG-TAATTC-TGTAAATCGA-GGGTAAAAC
* *
204043250 -GATAATTATGTAAAT-TAGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
*
204043277 GGTAATTCTGTAAAT
1 AGTAATTCTGTAAAT
204043292 TGGGGTACTT
Statistics
Matches: 157, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
26 4 0.03
27 151 0.96
28 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:204043148 original size:81 final size:81
Alignment explanation
Indices: 204043063--204043291 Score: 203
Period size: 81 Copynumber: 2.8 Consensus size: 81
204043053 GGTATTTTGG
* **** * *
204043063 TAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAA
1 TAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAA
204043128 ATCAAGGGTAAAACAA
66 ATCAAGGGTAAAACAA
* * * * *
204043144 TAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAA
1 TAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAA
* * *
204043209 GTCGAGGGTAAAACGA
66 ATCAAGGGTAAAACAA
** * * * * * *
204043225 TAA-TCATGTAAATCAGGGGTAAAAC-GATAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTG
1 TAATTC-TACAAACCAAGGGTAAAACAG-TAATTCTGTAAATCGA-GGGTAAAACAGTAATTCTA
204043287 TAAAT
63 TAAAT
204043292 TGGGGTACTT
Statistics
Matches: 123, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 4 0.03
81 119 0.97
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.29
Consensus pattern (81 bp):
TAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAA
ATCAAGGGTAAAACAA
Found at i:204043176 original size:54 final size:54
Alignment explanation
Indices: 204043098--204043291 Score: 266
Period size: 54 Copynumber: 3.6 Consensus size: 54
204043088 AGTAATTTTG
* *
204043098 TAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTCTA
* *
204043152 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTCTA
* * * * *
204043206 TAAGTCGAGGGTAAAACGATAA-TCATGTAAATCAGGGGTAAAACGATAATTATG
1 TAAATCGAGGGTAAAACGGTAATTC-TGTAAATCAAGGGTAAAACGATAATTCTA
*
204043260 TAAAT-TAGGGGTAAAACGGTAATTCTGTAAAT
1 TAAATCGA-GGGTAAAACGGTAATTCTGTAAAT
204043292 TGGGGTACTT
Statistics
Matches: 123, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.02
54 118 0.96
55 2 0.02
ACGTcount: A:0.42, C:0.10, G:0.22, T:0.26
Consensus pattern (54 bp):
TAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTCTA
Found at i:204043333 original size:27 final size:26
Alignment explanation
Indices: 204043295--204043393 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 26
204043285 TGTAAATTGG
204043295 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAATTTTACAA-TCGAA
* *
204043322 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAATTTTAC-AATCGAA
* * * *
204043349 GGTATTTCAGTATTTTTACAAACTAA
1 GGTATTTCGGTAATTTTACAATCGAA
204043375 GGATATTTCGGTAATTTTA
1 GG-TATTTCGGTAATTTTA
204043394 GTAAACTAAA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 9 0.15
27 48 0.81
28 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAATCGAA
Found at i:204043408 original size:27 final size:26
Alignment explanation
Indices: 204043304--204043408 Score: 66
Period size: 27 Copynumber: 3.9 Consensus size: 26
204043294 GGGTACTTTG
* * * *
204043304 GTAATTTTACAAGTCGAAGGTATTTCG
1 GTAATTTTACAA-ACTAAAGTATTTCA
* * **
204043331 GTAAATTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAA-CTAAAGTATTTCA
* * *
204043358 GTATTTTTACAAACTAAGGATATTTCG
1 GTAATTTTACAAACTAAAG-TATTTCA
*
204043385 GTAATTTTAGTAAACTAAAGTATT
1 GTAATTTTA-CAAACTAAAGTATT
204043409 CTAAATAGGG
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.06
27 51 0.81
28 8 0.13
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (26 bp):
GTAATTTTACAAACTAAAGTATTTCA
Found at i:204046159 original size:31 final size:29
Alignment explanation
Indices: 204046121--204046182 Score: 97
Period size: 31 Copynumber: 2.1 Consensus size: 29
204046111 CCTTTTCATA
204046121 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATA-TGGGCC-AAGCCT
*
204046152 TTTCATATTTCATATTATGGGCCAAGCCT
1 TTTCATATTTCATAATATGGGCCAAGCCT
204046181 TT
1 TT
204046183 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 8 0.27
30 6 0.20
31 16 0.53
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (29 bp):
TTTCATATTTCATAATATGGGCCAAGCCT
Found at i:204046424 original size:24 final size:24
Alignment explanation
Indices: 204046372--204046539 Score: 250
Period size: 24 Copynumber: 7.0 Consensus size: 24
204046362 GCTTTATCAT
* *
204046372 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
204046397 ATAACTGGGGCAAAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
204046421 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
204046445 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
204046469 ATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
204046493 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
*
204046516 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
204046540 CACTTCCTCC
Statistics
Matches: 132, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
23 21 0.16
24 99 0.75
25 12 0.09
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:204046612 original size:20 final size:20
Alignment explanation
Indices: 204046584--204046624 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
204046574 GCATTTATGA
*
204046584 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
204046604 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
204046624 A
1 A
204046625 TGTAACACCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:204047372 original size:31 final size:31
Alignment explanation
Indices: 204047334--204047397 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
204047324 CCTTTTCATA
204047334 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
204047365 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
204047396 TT
1 TT
204047398 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:204047729 original size:47 final size:47
Alignment explanation
Indices: 204047589--204047729 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
204047579 GCTTTATCAT
* *
204047589 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
204047637 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
204047684 ATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
204047730 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
46 12 0.14
47 57 0.66
48 18 0.21
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:204047730 original size:24 final size:24
Alignment explanation
Indices: 204047589--204047729 Score: 200
Period size: 23 Copynumber: 6.0 Consensus size: 24
204047579 GCTTTATCAT
*
204047589 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
204047614 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
204047637 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
204047660 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
204047684 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
204047708 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
204047730 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 3, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
23 56 0.51
24 46 0.42
25 8 0.07
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:204047818 original size:21 final size:20
Alignment explanation
Indices: 204047780--204047840 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
204047770 TATGATTACC
204047780 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
204047800 TCATGTGCAATAGCATACATT
1 TCATGTGC-ATATCATACATA
204047821 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
204047841 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
20 18 0.50
21 18 0.50
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:204047915 original size:25 final size:25
Alignment explanation
Indices: 204047883--204047930 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
204047873 ATACATAAAC
* * *
204047883 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
204047908 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
204047931 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:204051948 original size:27 final size:27
Alignment explanation
Indices: 204051848--204051931 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
204051838 GGGCATATTC
* *
204051848 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
204051875 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
204051902 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
204051929 GTC
1 GTC
204051932 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:204052048 original size:26 final size:27
Alignment explanation
Indices: 204051993--204052048 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
204051983 GTAAATCAAC
204051993 AAACCAAATGTATTTTAGTAATTTTGT
1 AAACCAAATGTATTTTAGTAATTTTGT
204052020 AAACC-AATGGTATTTCTA-TAATTTT-T
1 AAACCAAAT-GTATTT-TAGTAATTTTGT
204052046 AAA
1 AAA
204052049 AAGTCAAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
26 7 0.26
27 18 0.67
28 2 0.07
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (27 bp):
AAACCAAATGTATTTTAGTAATTTTGT
Found at i:204052096 original size:27 final size:27
Alignment explanation
Indices: 204052083--204052208 Score: 189
Period size: 27 Copynumber: 4.7 Consensus size: 27
204052073 TGTAAATTAG
*
204052083 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAACTAA
* * *
204052110 GGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAA
*
204052137 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAA
*
204052164 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAA
*
204052191 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
204052209 GTAAATCGAG
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAA
Found at i:204052174 original size:81 final size:81
Alignment explanation
Indices: 204052002--204052207 Score: 227
Period size: 81 Copynumber: 2.5 Consensus size: 81
204051992 CAAACCAAAT
* ** * * * *
204052002 GTATTTTAGTAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTAAAAAGTCAAGGGTATTTCT
1 GTATTTTGGTAATTTTACAAACCAAGGGTATTTC-AGTAA-TTTCACAAA-CCAAGGGTATTTCT
** *
204052066 GTAACTTTGTAAATTAGGG
63 GTAACTTTACAAACTAGGG
** *
204052085 GTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT-TGGT
1 GTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTCT-GT
*
204052149 AATTTTACAAACTAGGG
65 AACTTTACAAACTAGGG
*
204052166 GTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
1 GTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTT
204052208 TGTAAATCGA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
80 1 0.01
81 64 0.62
82 7 0.07
83 31 0.30
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (81 bp):
GTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTCTGTA
ACTTTACAAACTAGGG
Found at i:204052220 original size:27 final size:27
Alignment explanation
Indices: 204052002--204052276 Score: 160
Period size: 27 Copynumber: 10.1 Consensus size: 27
204051992 CAAACCAAAT
* * *
204052002 GTATTTTAGTAATTTTGTAAACCAATG
1 GTATTTTAGTAATTTTATAAATCAAGG
*
204052029 GTATTTCTA-TAATTTTTAAAAAGTCAAGG
1 GTATTT-TAGTAA-TTTTATAAA-TCAAGG
* * * *
204052058 GTATTTCT-GTAACTTTGTAAATTAGGG
1 GTATTT-TAGTAATTTTATAAATCAAGG
* * *
204052085 GTATTTTGGTAATTTTACAAATTAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
** * * *
204052112 GTATTTCGGTAATTTCACAAACCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
* * *
204052139 GTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTTAGTAATTTTATAAATC-AAGG
* * *
204052166 GTATTTTGGTAATTTTACAAACCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
* *
204052193 GTATTTTAGTAATTTTGTAAATCGAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
**** * *
204052220 GTAAAACAGTAATTCTGTAAATCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
**** * *
204052247 GTAAAACAGTAATTCTATAAATCGAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
204052274 GTA
1 GTA
204052277 AAACGGTAAT
Statistics
Matches: 207, Mismatches: 34, Indels: 14
0.81 0.13 0.05
Matches are distributed among these distances:
26 2 0.01
27 174 0.84
28 16 0.08
29 15 0.07
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
GTATTTTAGTAATTTTATAAATCAAGG
Found at i:204052232 original size:81 final size:81
Alignment explanation
Indices: 204052080--204052233 Score: 182
Period size: 81 Copynumber: 1.9 Consensus size: 81
204052070 CTTTGTAAAT
** * ***
204052080 TAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAA
**
204052145 TGGTAATTTTACAAAC
66 CAGTAATTTTACAAAC
* *** * *
204052161 TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAA
204052226 CAGTAATT
66 CAGTAATT
204052234 CTGTAAATCA
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAA
CAGTAATTTTACAAAC
Found at i:204052259 original size:81 final size:81
Alignment explanation
Indices: 204052174--204052403 Score: 205
Period size: 81 Copynumber: 2.8 Consensus size: 81
204052164 GGGTATTTTG
* **** * *
204052174 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
204052239 AATCAAGGGTAAAACA
66 AATCAAGGGTAAAACA
* * * * *
204052255 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
* *
204052320 AGTCGAGGGTAAAAC-
66 AATCAAGGGTAAAACA
** * * * * * *
204052335 GATAA-TCATGTAAATCAGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCT
1 G-TAATTC-TACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGA-GGGTAAAACAGTAATTCT
*
204052398 GTAAAT
63 ATAAAT
204052404 TGGGGGTACT
Statistics
Matches: 125, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
80 4 0.03
81 121 0.97
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.29
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCAAGGGTAAAACA
Found at i:204052411 original size:27 final size:27
Alignment explanation
Indices: 204052201--204052403 Score: 268
Period size: 27 Copynumber: 7.5 Consensus size: 27
204052191 GGGTATTTTA
* *
204052201 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
204052228 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
204052255 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
204052282 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
204052309 GTAATTCTATAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
204052336 ATAA-TCATGTAAATC-AGGGGTAAAACG
1 GTAATTC-TGTAAATCGA-GGGTAAAACG
* *
204052363 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
204052390 GTAATTCTGTAAAT
1 GTAATTCTGTAAAT
204052404 TGGGGGTACT
Statistics
Matches: 158, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.02
27 154 0.97
28 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:204052438 original size:27 final size:27
Alignment explanation
Indices: 204052408--204052469 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
204052398 GTAAATTGGG
* *
204052408 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAAATTTACAAATCGAA
*
204052435 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAAATTTACAAATCGAA
204052462 GGTATTTC
1 GGTATTTC
204052470 AGTATTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 3 0.10
27 28 0.90
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (27 bp):
GGTATTTCGGTAAATTTACAAATCGAA
Found at i:204055182 original size:541 final size:541
Alignment explanation
Indices: 204053504--204062880 Score: 16722
Period size: 541 Copynumber: 17.5 Consensus size: 541
204053494 GGGTGTTACA
* * * *
204053504 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTAATGATGGAGGTATAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
* * *
204053569 ATGTTATAAATTTTTGTATTTTGATGTTTAA-GGATAGATTTTGCATGTTTATGGTTAGAGAAAC
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGG-TAGATTATGCATGTTTATGGTTGGAGAAAC
* * *
204053633 AACTTTTGCTAAGTTATTTTCAATGAAAATGCTAAAAAGGACTAATTTATAAAAGTTATAAAATA
130 AACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATT
* *
204053698 TGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTCGG
195 TTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGG
204053763 CTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGAT
260 CTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGAT
*
204053828 AAAATTTAGGGGCAAAAATGTAA-TTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTCTAA
325 AAAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
* *
204053892 ATAAACAAAATAAAAGCAAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
390 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACC
204053957 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
455 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
204054022 GATTTTCACG-TTTTGAAATCC
520 GATTTTCACGTTTTTGAAATCC
* * *
204054043 TTGTAACATGATCTACCTATTTCTACCACTTATTTGAGTTATGATGAAGGTTTAGGGTCTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
*
204054108 ATGTTATAAATTTTTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
* *
204054173 ACTTTTGCTAAGTGATTTTCAATGACAATGCTAAAAAGGACTAATTTGTAAAACTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
204054238 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
*
204054303 TTAAACTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
* * *
204054368 AAATTTAAGGGC-AAAATGTAATTTTTTCCATGGTATGAAAAAATTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
* * **
204054432 TAAACGAAATAAAAGCCAGATTTTGGTCATCTTCAACCTTTCGGCCGAAATTTTGAAGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
*
204054497 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCTGTTCTTGCCCCGTTTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204054562 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
* * **
204054583 TTGTAACATGATCTACCTATTTCTACTATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAAAT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
* *
204054648 ATGTTGTAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
* * *
204054713 AGTTTTGCTAAGTGATTTTCAATGAAAATGGTAAAAATGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
* ** *
204054778 GTCATAAAAGTGTGATTTAGTGGAAATTGTGGGAATTTATAGTTATGAAAGTGGTTCTGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
* *
204054843 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTAAAAGCCTAGGGGCAAAAGTGTAAA-ATGAT
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTA-GGGTAAAAGTGTAAATATGAT
* * *
204054907 AAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATTAAATTTAGTAGTTAAATGTTTAA
325 AAAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
* *
204054972 ATAAACAAAATAAAAGCAAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
390 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACC
204055037 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
455 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
*
204055102 GATTTTTACGTTTTTGAAATCC
520 GATTTTCACGTTTTTGAAATCC
* *
204055124 TTGTAACATGATCTACCTATTTCAACCATTTATTTGAGTTATGATGAAGGTTTAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
*
204055189 ATGTTATAAATTTGTGTATTTTGATGTTTAATAGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204055254 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
* ** *
204055319 TTCATAAAAGTGTGATTTTGTGCTAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCAGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
* *
204055384 TTAAAGTGAAAATAAATTGAATGAAAATTATCTTACAAACCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
* *
204055449 AAATTTAGGGGCAAAAATTTAGTTTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
326 AAATTTAGGGGCAAAAATGTA-ATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
* * *
204055514 ATAAACAAAATAAAAGCCAAATTTTGTTCCTCTTCAATCCCTCGGCCGAAATTTTGAAGACCACC
390 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACC
**
204055579 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTATGTTCTTGCCCCGTTTTTAAT
455 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
204055644 GATTTTCACGTTTTTGAAATCC
520 GATTTTCACGTTTTTGAAATCC
* *
204055666 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
*
204055731 ATGTTATAAATTTGGGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204055796 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
204055861 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
* *
204055926 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCTTAGGGTAAAAGTGTAAATATG-TT
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
**
204055990 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAGTTTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
* *
204056055 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTGTGGAGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
* *
204056120 TGGCTAGGGTTCTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTAAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204056185 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
* *
204056206 TTGTAACATGATCTACCTATTTCTACCACTTATTTGAGTTATGATGAAGGTTTAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
*
204056271 ATGTTATAAATTTGTGTATTTTGATGTTTAATAGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204056336 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
* ** *
204056401 TTCATAAAAGTGTGATTTTGTGCTAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCAGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
* *
204056466 TTAAAGTGAAAATAAATTGAATGAAAATTATCTTACAAACCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
* * *
204056531 AAATTTAAGGGCAAAAATTTAATTTTTTCTATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
* * * *
204056596 TAAACAAAATAAAAGCCAAATTTTGTTCCTCTTCAATCCCTCGGCCGAAATTTTGCAGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
* **
204056661 TGGCTAGGGTTTTGTTTAAGCTTTCCCAGCTCCATAGTAAGTATGTTCTTGCCCCGTTTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204056726 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
* *
204056747 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
*
204056812 ATGTTATAAATTTGGGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204056877 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA-TT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
204056941 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
*
204057006 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTA-AAGCTTAGGGTAAAAGTGTAAATATGAT-
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
*
204057069 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGAT-AAGTTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
204057133 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAA-TTTG-AGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
204057196 TGGCTAGGG-TTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204057260 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
204057281 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
204057345 ATGTTATAAATTTGTGTATTTTGATGTTTAAT-GTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204057409 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
204057474 TTCATAAAAGTGTGATTT--TGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTC-GCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
*
204057536 TTAAAGTGAAAATAAATTGAATGAAAATTA-TTTACAAACCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
*
204057600 AAATTTA-GGGCAAAAAT-TAATTTTTTCCACAGTATGATAAAATTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
*
204057663 TAAACAAAATAAAAGCCAAATTTT-GTC-TCTTCAATCCCTCGGCCGAAATTTTGAAGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
**
204057726 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTATGTTCTTGCCCCGTTTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204057791 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
* *
204057812 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
204057877 ATGTTATAAATTTG-GTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204057941 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
204058006 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
* *
204058071 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCTTAGGGTAAAAGTGTAAATATG-TT
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
**
204058135 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAGTTTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
* * *
204058200 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTGTGGAGACCGCCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
*
204058265 TGGCTAGGGTTCTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCG-TTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204058329 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
*
204058350 TTGTAACATGATCTACCTATTTCTACCACTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
*
204058414 ATGTTATAAATTTGTGTATTTTGATGTTTAATAGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204058479 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA-TT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
204058543 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
204058608 TT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
204058672 AAATTTAGGGGCAAAAAT-TAA-TTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
204058735 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
204058800 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT--GTTCTTGCCCCGTTTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204058863 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
204058884 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAA-C
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
204058948 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204059013 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
204059078 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
204059143 TTAAA-TGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
204059207 AAATTTAGGGGCAAAAATGTAA-TTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
204059271 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
204059336 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204059401 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
*
204059422 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTTTAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
204059487 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204059552 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAA-TTATAAAA-TT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
204059615 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
*
204059680 TTAAATTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
204059745 AAATTTAGGGGCAAAAAT-TAATTTTTTCC-------------A--TAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
204059794 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
*
204059859 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCTGTTCTTG-CCCGTTTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204059923 ATTTTCACG-TTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
204059943 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
204060008 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204060073 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
*
204060138 GTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
204060203 TT-AAGTGAAAATAAATTGAATGAAAATTATTTTA-AAGCCTAGGGTAAAAGTGTAAATA-GATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
*
204060265 AAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
204060330 TAAACAAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCT-GGCCGAAATTTTGAAGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
204060393 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204060458 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
204060479 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
204060544 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204060609 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
204060674 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
204060739 TTAAA-TGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATA-GATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
204060802 AAATTTAGGGGCAAAAATGTAA-TTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
204060866 TAAAC-AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
204060930 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTG-CCCGTTTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204060994 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
204061015 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
204061079 ATGTTATAAATTT-TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204061143 ACTTTTGCTAAGTGATTTTCAATGAAAATGCT-AAAAGGACTAATTTGTAAAAGTTATAAAA-TT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
204061206 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
204061271 TTAAA-TGAAAATAAATTGAATGAAAATTA-TTTACAAGCCTAGGGTAAAAGTGTAAATATGAT-
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
204061333 AAATTTAGGGGCAAAAATGTAATTTTTTCC-------------A--TAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
204061383 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
204061448 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204061513 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
* *
204061534 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
204061599 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204061664 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
*
204061728 GTCATAAAAGTGTGATTTAGTGGAAATTGTGGG-TTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
204061792 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAAG-CTAGGGTAAAAGTGTAAATATGAT
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTAC-AAGCCTAGGGTAAAAGTGTAAATATGAT
*
204061856 AAAATTTAGGGGCAAAAATGTAA-TTTTGCCAT-GTATGATAAAATTTAGTAATTAAATGTTTAA
325 AAAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAA
204061919 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT-GGCCG-AATTTTGAAGACCACC
390 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACC
204061982 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-CGTTCTTGCCCCGTTTTTAAT
455 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
204062046 GATTTTCA-G-TTTTGAAATCC
520 GATTTTCACGTTTTTGAAATCC
204062066 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAG-T-T-ATGAAGGTCTAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
204062128 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTT-GAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204062192 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGT-AAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
204062256 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGG-TTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
204062320 TTAAAGTGAAAATAAATT-AATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGAT-
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
*
204062383 AAATTTAGGGGCAAAAATATAATTTTTTCC--A-TAT-ATAAAATTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
204062444 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
391 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
204062509 TGGCTAGGGTTTTGTTTAAGCTTTCCAAG-TCCATAGTAAGT-CGTTCTTGCCCCG-TTTTAATG
456 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
204062571 ATTTTCACGTTTTTGAAATCC
521 ATTTTCACGTTTTTGAAATCC
204062592 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATG-AGGTCTAGGGTTTGAA-C
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
204062655 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
204062720 ACTTTTGCTAAGTGA-TTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
*
204062784 GTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
204062849 TT-AAGTG-AAATAAATTGAATGAAAATTATTTT
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTT
204062881 NNNNNNNNNN
Statistics
Matches: 8500, Mismatches: 236, Indels: 215
0.95 0.03 0.02
Matches are distributed among these distances:
517 24 0.00
518 110 0.01
519 85 0.01
520 47 0.01
521 349 0.04
522 144 0.02
523 237 0.03
524 108 0.01
525 35 0.00
526 119 0.01
527 155 0.02
528 271 0.03
529 143 0.02
530 139 0.02
531 237 0.03
532 390 0.05
533 105 0.01
534 552 0.06
535 505 0.06
536 754 0.09
537 512 0.06
538 434 0.05
539 718 0.08
540 915 0.11
541 920 0.11
542 492 0.06
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.37
Consensus pattern (541 bp):
TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
ATTTTCACGTTTTTGAAATCC
Found at i:204067563 original size:80 final size:80
Alignment explanation
Indices: 204067479--204067627 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
204067469 TATGGTAACC
* * * *
204067479 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
204067543 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
204067559 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
204067624 CCGG
66 CCGG
204067628 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:204067569 original size:40 final size:38
Alignment explanation
Indices: 204067520--204067627 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
204067510 ATCACGATTT
*
204067520 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
204067560 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
204067600 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
204067628 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:204075669 original size:80 final size:80
Alignment explanation
Indices: 204075585--204075733 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
204075575 TATGGTAACC
* * * *
204075585 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
204075649 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
204075665 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
204075730 CCGG
66 CCGG
204075734 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:204075675 original size:40 final size:38
Alignment explanation
Indices: 204075626--204075733 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
204075616 ATCACGATTT
*
204075626 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
204075666 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
204075706 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
204075734 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:204078855 original size:40 final size:40
Alignment explanation
Indices: 204078796--204078902 Score: 117
Period size: 40 Copynumber: 2.7 Consensus size: 40
204078786 CAATTGAATG
* **
204078796 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGACATTTATGCTAGTAACC
* * * *
204078836 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAA-GACATTTATGCTAGTAACC
* *
204078876 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGACATT
204078903 CGTGCATGTG
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.05
40 49 0.89
41 3 0.05
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACATTTATGCTAGTAACC
Found at i:204081632 original size:39 final size:39
Alignment explanation
Indices: 204081578--204081721 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
204081568 GAATGTTCGA
204081578 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
204081617 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
204081656 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
204081695 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
204081722 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:204081668 original size:78 final size:79
Alignment explanation
Indices: 204081579--204081761 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
204081569 AATGTTCGAG
204081579 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
204081643 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
204081657 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
204081722 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
204081736 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
204081762 GTTTGAACAG
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:204087672 original size:20 final size:20
Alignment explanation
Indices: 204087647--204087684 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
204087637 CTAAATCGAG
204087647 AACTTAGGAA-ATTTTTACAA
1 AACTTA-GAAGATTTTTACAA
204087667 AACTTAGAAGATTTTTAC
1 AACTTAGAAGATTTTTAC
204087685 CATGTACAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (20 bp):
AACTTAGAAGATTTTTACAA
Found at i:204097150 original size:40 final size:40
Alignment explanation
Indices: 204097105--204097272 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
204097095 CGGAATATAA
204097105 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
204097145 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
204097185 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
204097225 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
204097265 CCGGATAT
1 CCGGATAT
204097273 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:204097255 original size:80 final size:80
Alignment explanation
Indices: 204097121--204097270 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
204097111 ATAACCACGT
* *
204097121 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
204097186 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
204097201 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
204097264 CCCGGAT
64 CCCGGAT
204097271 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:204104322 original size:40 final size:40
Alignment explanation
Indices: 204104277--204104443 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
204104267 CGGAATATAA
204104277 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
204104317 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
204104357 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
204104397 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
204104436 CCGGATAT
1 CCGGATAT
204104444 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:204104427 original size:80 final size:79
Alignment explanation
Indices: 204104293--204104441 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
204104283 ATAACCACGT
*
204104293 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
204104358 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
204104373 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
204104436 CCGGAT
64 CCGGAT
204104442 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:204115570 original size:40 final size:40
Alignment explanation
Indices: 204115525--204115712 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
204115515 ATAATCCACA
* * * *
204115525 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACT
* * *
204115565 TGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACT
* * *
204115605 CGCACGAATGCCTTCGGGTCTTAG-CCGGATATGATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACT
* * *
204115644 AGCATAAATGCCTTCGGGACTTAGCCCGGATATGATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACT
* *
204115684 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
204115713 GTATCATTCA
Statistics
Matches: 131, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 32 0.24
40 99 0.76
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACT
Found at i:204115667 original size:79 final size:79
Alignment explanation
Indices: 204115525--204115709 Score: 228
Period size: 79 Copynumber: 2.3 Consensus size: 79
204115515 ATAATCCACA
* * * * * *
204115525 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAAATGCCTTCGGGTCTT-AGCCGGATATGATAACTAGCACAAATGCCTTCGGGACTTAGC
204115590 CCGGATAT-AACAACT
65 CCGGATATGAAC-ACT
* * * *
204115605 CGCACGAATGCCTTCGGGTCTTAGCCGGATATGATCACTAGCATAAATGCCTTCGGGACTTAGCC
1 AGCACAAATGCCTTCGGGTCTTAGCCGGATATGATAACTAGCACAAATGCCTTCGGGACTTAGCC
*
204115670 CGGATATGATCACT
66 CGGATATGAACACT
* *
204115684 AGCATAAATGCCTTCGGGACTTAGCC
1 AGCACAAATGCCTTCGGGTCTTAGCC
204115710 CGGGTATCAT
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 68 0.76
80 21 0.24
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
AGCACAAATGCCTTCGGGTCTTAGCCGGATATGATAACTAGCACAAATGCCTTCGGGACTTAGCC
CGGATATGAACACT
Found at i:204123661 original size:40 final size:40
Alignment explanation
Indices: 204123612--204123778 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
204123602 TCTTCGGAAT
* * *
204123612 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
204123651 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
204123691 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
204123731 TTAGCCCGGATATATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
204123770 TTAGCCCGG
1 TTAGCCCGG
204123779 GTATCATTCA
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 31 0.29
40 75 0.71
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:204123739 original size:80 final size:79
Alignment explanation
Indices: 204123603--204123778 Score: 212
Period size: 79 Copynumber: 2.2 Consensus size: 79
204123593 AAACCGATTT
* * * * *
204123603 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATAT-AT
*
204123667 AACTTGCACAAATGC
65 AACTAGCACAAATGC
* ** *
204123682 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAT
* *
204123746 CACTAGCATAAATGC
65 AACTAGCACAAATGC
204123761 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
204123779 GTATCATTCA
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
79 40 0.49
80 40 0.49
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATATA
ACTAGCACAAATGC
Found at i:204128961 original size:33 final size:33
Alignment explanation
Indices: 204128923--204128986 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
204128913 ATAACACAGT
204128923 AGCCTTATTCAGTAACAGTAAAGTCTGGGCCAA
1 AGCCTTATTCAGTAACAGTAAAGTCTGGGCCAA
204128956 AGCCTTATTCAGTAACAGTAAAGTCTGGGCC
1 AGCCTTATTCAGTAACAGTAAAGTCTGGGCC
204128987 TTAGCCCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (33 bp):
AGCCTTATTCAGTAACAGTAAAGTCTGGGCCAA
Found at i:204129119 original size:30 final size:30
Alignment explanation
Indices: 204129037--204129119 Score: 96
Period size: 31 Copynumber: 2.7 Consensus size: 30
204129027 TCAATCTCGA
*
204129037 CATAT-ACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGAGC-GAAGCCTTTTCATAAAT
* *
204129067 CATATCACTGGGCCATAGCCTTTTCATAAAT
1 CATATCACTGAGCGA-AGCCTTTTCATAAAT
* *
204129098 CATGTCACTGATCGAAGCCTTT
1 CATATCACTGAGCGAAGCCTTT
204129120 ACTGTAAGCG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
30 13 0.28
31 33 0.72
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.33
Consensus pattern (30 bp):
CATATCACTGAGCGAAGCCTTTTCATAAAT
Found at i:204131003 original size:27 final size:28
Alignment explanation
Indices: 204130947--204131016 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
204130937 AAAATTGTAC
204130947 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
204130975 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
204131002 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
204131017 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:204131027 original size:27 final size:27
Alignment explanation
Indices: 204130947--204131028 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
204130937 AAAATTGTAC
* *
204130947 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
204130975 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
204131002 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
204131029 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:204134767 original size:51 final size:51
Alignment explanation
Indices: 204134707--204134910 Score: 340
Period size: 51 Copynumber: 4.0 Consensus size: 51
204134697 TATGTATGAG
* *
204134707 ATGTATATATGTGATACGGCCAAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
*
204134758 ATGTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
*
204134809 ATATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
* *
204134860 A--TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGT
1 ATGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
204134909 AT
1 AT
204134911 ATATGTTATG
Statistics
Matches: 147, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
49 47 0.32
51 100 0.68
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.30
Consensus pattern (51 bp):
ATGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
Found at i:204134898 original size:100 final size:101
Alignment explanation
Indices: 204134710--204134914 Score: 349
Period size: 100 Copynumber: 2.0 Consensus size: 101
204134700 GTATGAGATG
* * *
204134710 TATATATGTGATACGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATGTATATATGTGATAC
1 TATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTA-GTATACATGTGATAA
*
204134775 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
65 GGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATA
*
204134812 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA-TATACATGTGATAAG
1 TATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTAGTATACATGTGATAAG
204134876 GCCTAATGGCCAATGTGATGAATGTGAAAGAGTATA
66 GCCTAATGGCCAATGTGATGAATGTGAAAGAGTATA
204134912 TAT
1 TAT
204134915 GTTATGATTT
Statistics
Matches: 98, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
100 51 0.52
102 47 0.48
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (101 bp):
TATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTAGTATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGAGTATA
Found at i:204136578 original size:40 final size:40
Alignment explanation
Indices: 204136532--204136791 Score: 246
Period size: 40 Copynumber: 6.5 Consensus size: 40
204136522 TGAATGATAC
**
204136532 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * *
204136572 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
204136612 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* * *
204136652 CC-GGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
204136691 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
204136731 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
204136771 CC-GGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
204136792 ATCATGCTGG
Statistics
Matches: 193, Mismatches: 19, Indels: 17
0.84 0.08 0.07
Matches are distributed among these distances:
39 39 0.20
40 148 0.77
41 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:204140628 original size:49 final size:49
Alignment explanation
Indices: 204140570--204140856 Score: 506
Period size: 49 Copynumber: 5.9 Consensus size: 49
204140560 GTATGAGATG
*
204140570 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
204140619 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
204140668 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
204140717 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
204140764 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
204140813 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
204140857 CATATGTGTG
Statistics
Matches: 228, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 43 0.19
49 185 0.81
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:204140940 original size:123 final size:123
Alignment explanation
Indices: 204140813--204141058 Score: 483
Period size: 123 Copynumber: 2.0 Consensus size: 123
204140803 TGAAGGTGTA
204140813 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
204140878 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
204140936 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
*
204141001 TGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
204141059 GAAGGCTAAT
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.32
Consensus pattern (123 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:204140943 original size:18 final size:18
Alignment explanation
Indices: 204140920--204140955 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
204140910 GTGTGATATG
*
204140920 TATATGTGGTAAAGCCTA
1 TATATGTGATAAAGCCTA
*
204140938 TATATGTGATAAGGCCTA
1 TATATGTGATAAAGCCTA
204140956 ATGGCCGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (18 bp):
TATATGTGATAAAGCCTA
Found at i:204140959 original size:66 final size:69
Alignment explanation
Indices: 204140872--204141010 Score: 176
Period size: 75 Copynumber: 2.0 Consensus size: 69
204140862 GTGTGATATG
*
204140872 TATATGTGGTAAAGCCGAATGG-C-T-AATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
1 TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
204140934 CCTA
66 CCTA
* *
204140938 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTG
1 TATATGTGATAAAGCCGAATGGCC-----G-TGAATGTGAAACATATGTGTGATATGTATATGTG
204141003 GTAAAGCC
60 GTAAAGCC
204141011 GAATGGCTAA
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
66 19 0.31
67 1 0.02
74 1 0.02
75 40 0.66
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (69 bp):
TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
CCTA
Found at i:204141084 original size:47 final size:48
Alignment explanation
Indices: 204140971--204141121 Score: 277
Period size: 48 Copynumber: 3.2 Consensus size: 48
204140961 CGATGTGATG
*
204140971 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
204141019 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAA-GGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
204141066 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
204141114 AATGTGAA
1 AATGTGAA
204141122 TGTTGTAACA
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
47 46 0.46
48 54 0.54
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:204141215 original size:37 final size:37
Alignment explanation
Indices: 204141161--204141251 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
204141151 AACTTGGAAA
*
204141161 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
204141199 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
204141236 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
204141252 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:204143253 original size:40 final size:40
Alignment explanation
Indices: 204143146--204143411 Score: 161
Period size: 40 Copynumber: 6.7 Consensus size: 40
204143136 CATGAGCATT
* *
204143146 TGAATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAT-ATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAG
*
204143187 TGAATATA-TCGGGCTAAGACCCGAAGGCATTTGTG-TGAG
1 TGAATATACCCGGGCTAAGACCCGAAGGCATTTGTGCT-AG
* * * *
204143226 TTG-TTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 -TGAATATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAG
** * * *
204143266 TGGTTATATCC-GGCTAA-ATTCCGAAGAGCATTCGTGCTAG
1 TGAATATACCCGGGCTAAGA-CCCGAAG-GCATTTGTGCTAG
* * * ** *
204143306 TG-ATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGAATATACCCGGGCTAAGACCCGAAG-GCATTTGTGCTAG
* * * ** *
204143346 TG-ATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGAATATACCCGGGCTAAGACCCGAAG-GCATTTGTGCTAG
* * * *
204143386 TG-ATGTATCCGGGCTAGGTCCCGAAG
1 TGAATATACCCGGGCTAAGACCCGAAG
204143412 AGCAATCATG
Statistics
Matches: 195, Mismatches: 21, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 49 0.25
40 138 0.71
41 6 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TGAATATACCCGGGCTAAGACCCGAAGGCATTTGTGCTAG
Found at i:204143412 original size:40 final size:40
Alignment explanation
Indices: 204143272--204143415 Score: 245
Period size: 40 Copynumber: 3.6 Consensus size: 40
204143262 CTTGTGGTTA
*
204143272 TATCCGG-CTAAATTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
204143311 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
204143351 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * *
204143391 TATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCA
204143416 ATCATGCTGG
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 7 0.07
40 93 0.93
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:204147313 original size:49 final size:49
Alignment explanation
Indices: 204147192--204147480 Score: 492
Period size: 49 Copynumber: 5.9 Consensus size: 49
204147182 GTATGAGATG
*
204147192 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TA
204147243 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
204147292 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
204147341 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
204147388 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
204147437 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
204147481 CATATGTGTG
Statistics
Matches: 228, Mismatches: 8, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
47 43 0.19
49 139 0.61
51 46 0.20
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:204147419 original size:96 final size:96
Alignment explanation
Indices: 204147191--204147480 Score: 490
Period size: 96 Copynumber: 3.0 Consensus size: 96
204147181 TGTATGAGAT
*
204147191 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGTGATA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATATGTGATA
*
204147256 AGGCCTAATGGCCAATGTGATGAATGTGAAAGT
64 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
204147289 GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATA
204147354 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
64 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
204147387 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
*
204147452 GCCTAATGGCCGATGTGATGAATGTGAAA
66 GCCTAATGGCCAATGTGATGAATGTGAAA
204147481 CATATGTGTG
Statistics
Matches: 183, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
96 89 0.49
98 48 0.26
100 46 0.25
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (96 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:204147455 original size:145 final size:148
Alignment explanation
Indices: 204147192--204147480 Score: 494
Period size: 145 Copynumber: 2.0 Consensus size: 148
204147182 GTATGAGATG
* *
204147192 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGTGATAA
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG-GTATATATATATGTGATAA
204147257 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATG
65 GGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATG
204147322 TGATGAATGTGAAAGTGTA
130 TGATGAATGTGAAAGTGTA
*
204147341 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA-G-A-GTATATATGTGATAAG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGGTATATATATATGTGATAAG
* * *
204147403 GCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
204147468 GATGAATGTGAAA
131 GATGAATGTGAAA
204147481 CATATGTGTG
Statistics
Matches: 134, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
145 90 0.67
146 1 0.01
147 1 0.01
149 42 0.31
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (148 bp):
TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGGTATATATATATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
GATGAATGTGAAAGTGTA
Found at i:204147566 original size:17 final size:18
Alignment explanation
Indices: 204147544--204147578 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
204147534 GTGTGATATG
204147544 TATATGTG-TAAAGCCTA
1 TATATGTGATAAAGCCTA
*
204147561 TATATGTGATAAGGCCTA
1 TATATGTGATAAAGCCTA
204147579 ATGGCCGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (18 bp):
TATATGTGATAAAGCCTA
Found at i:204147566 original size:122 final size:123
Alignment explanation
Indices: 204147437--204147681 Score: 474
Period size: 122 Copynumber: 2.0 Consensus size: 123
204147427 TGAAGGTGTA
204147437 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
204147502 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGT-GTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
204147559 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
*
204147624 TGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
204147682 GAAGGGCTAA
Statistics
Matches: 121, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
122 113 0.93
123 8 0.07
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.32
Consensus pattern (123 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:204147582 original size:65 final size:69
Alignment explanation
Indices: 204147496--204147633 Score: 167
Period size: 74 Copynumber: 2.0 Consensus size: 69
204147486 GTGTGATATG
*
204147496 TATATGTGGTAAAGCCGAATGG-C-T-AATGTGAAACATATGTGTGATATGTATATGT-GTAAAG
1 TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
204147557 CCTA
66 CCTA
* *
204147561 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTG
1 TATATGTGATAAAGCCGAATGGCC-----G-TGAATGTGAAACATATGTGTGATATGTATATGTG
204147626 GTAAAGCC
60 GTAAAGCC
204147634 GAATGGCTAA
Statistics
Matches: 60, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
65 19 0.32
66 1 0.02
73 1 0.02
74 31 0.52
75 8 0.13
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.32
Consensus pattern (69 bp):
TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
CCTA
Found at i:204147646 original size:48 final size:48
Alignment explanation
Indices: 204147594--204147792 Score: 364
Period size: 48 Copynumber: 4.2 Consensus size: 48
204147584 CGATGTGATG
*
204147594 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
204147642 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
204147690 AATGTGAAATA-ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
204147737 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
204147785 AATGTGAA
1 AATGTGAA
204147793 TGTTGTAACA
Statistics
Matches: 146, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 46 0.32
48 100 0.68
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:204147692 original size:170 final size:171
Alignment explanation
Indices: 204147388--204147728 Score: 487
Period size: 170 Copynumber: 2.0 Consensus size: 171
204147378 TGTGAAAGAG
** *
204147388 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACATATATATATATGTGATAAGG
* *
204147453 CCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGG
66 CCTAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAAGGG
204147518 CTAATGTGAAACATATGTGTGATATGTATATGT-GTAAAGCC
131 CTAATGTGAAACA-ATGTGTGATATGTATATGTGGTAAAGCC
* * *
204147559 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGT-ATAT
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AACATATATAT-ATATGTGATAA
* * *
204147623 GTG-GTAA-AGCCGAATG-GCT-AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
64 G-GCCTAATAGCCG-ATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGA
*
204147684 AGGGCTAATGTGAAATAATGTGTGATATGTATATGTGGTAAAGCC
127 AGGGCTAATGTGAAACAATGTGTGATATGTATATGTGGTAAAGCC
204147729 GAATGGCTAA
Statistics
Matches: 153, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
169 19 0.12
170 64 0.42
171 47 0.31
172 16 0.10
173 7 0.05
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.32
Consensus pattern (171 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAACATATATATATATGTGATAAGG
CCTAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAAGGG
CTAATGTGAAACAATGTGTGATATGTATATGTGGTAAAGCC
Found at i:204147714 original size:95 final size:96
Alignment explanation
Indices: 204147594--204147792 Score: 364
Period size: 95 Copynumber: 2.1 Consensus size: 96
204147584 CGATGTGATG
204147594 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
204147659 TGATATGTATATGTGGTAAAGCCGAAGGGCT
66 TGATATGTATATGTGGTAAAGCCGAAGGGCT
*
204147690 AATGTGAAATA-ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
* *
204147754 TGATATGTATGTGTGGTAAAGCCGAATGGCT
66 TGATATGTATATGTGGTAAAGCCGAAGGGCT
204147785 AATGTGAA
1 AATGTGAA
204147793 TGTTGTAACA
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
95 90 0.90
96 10 0.10
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (96 bp):
AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
TGATATGTATATGTGGTAAAGCCGAAGGGCT
Found at i:204147873 original size:37 final size:37
Alignment explanation
Indices: 204147832--204147958 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
204147822 AACTTGGAAA
*
204147832 TATGTTCCGGGTGAGA-CCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
204147869 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
204147906 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
204147943 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
204147959 TTCGTAATAA
Statistics
Matches: 88, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
36 10 0.11
37 78 0.89
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:204149909 original size:40 final size:40
Alignment explanation
Indices: 204149863--204150123 Score: 255
Period size: 40 Copynumber: 6.5 Consensus size: 40
204149853 TGAATGATAC
**
204149863 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * *
204149903 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
204149943 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* * *
204149983 CC-GGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
204150022 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
204150062 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
204150102 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
204150124 ATCATGCTGG
Statistics
Matches: 194, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
39 23 0.12
40 165 0.85
41 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:204153955 original size:49 final size:49
Alignment explanation
Indices: 204153897--204154182 Score: 497
Period size: 49 Copynumber: 5.9 Consensus size: 49
204153887 GTATGAGATG
*
204153897 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
204153946 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
204153995 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
204154044 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
204154091 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
204154140 TATAT-TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
204154183 CATATGTGTG
Statistics
Matches: 227, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
47 43 0.19
48 37 0.16
49 147 0.65
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:204154269 original size:18 final size:18
Alignment explanation
Indices: 204154246--204154281 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
204154236 GTGTGATATG
*
204154246 TATATGTGGTAAAGCCTA
1 TATATGTGATAAAGCCTA
*
204154264 TATATGTGATAAGGCCTA
1 TATATGTGATAAAGCCTA
204154282 ATGGCCGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (18 bp):
TATATGTGATAAAGCCTA
Found at i:204154280 original size:123 final size:124
Alignment explanation
Indices: 204154138--204154384 Score: 478
Period size: 123 Copynumber: 2.0 Consensus size: 124
204154128 TGTGAAGGTG
204154138 TATATATTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATAT
1 TATATATTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATAT
204154203 GTGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
66 GTGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
204154262 TATATA-TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATAT
1 TATATATTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATAT
*
204154326 GTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
66 GTGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
204154385 GAAGGGCTAT
Statistics
Matches: 122, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
123 116 0.95
124 6 0.05
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (124 bp):
TATATATTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATAT
GTGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:204154285 original size:66 final size:69
Alignment explanation
Indices: 204154198--204154336 Score: 176
Period size: 75 Copynumber: 2.0 Consensus size: 69
204154188 GTGTGATATG
*
204154198 TATATGTGGTAAAGCCGAATGG-C-T-AATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
1 TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
204154260 CCTA
66 CCTA
* *
204154264 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTG
1 TATATGTGATAAAGCCGAATGGCC-----G-TGAATGTGAAACATATGTGTGATATGTATATGTG
204154329 GTAAAGCC
60 GTAAAGCC
204154337 GAATGGCTAA
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
66 19 0.31
67 1 0.02
74 1 0.02
75 40 0.66
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (69 bp):
TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
CCTA
Found at i:204154351 original size:48 final size:48
Alignment explanation
Indices: 204154297--204154495 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
204154287 CGATGTGATG
*
204154297 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
204154345 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
204154393 -ATGTGAAATAGATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
204154440 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
204154488 AATGTGAA
1 AATGTGAA
204154496 TGTTGTAACA
Statistics
Matches: 144, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 45 0.31
48 99 0.69
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:204154376 original size:171 final size:170
Alignment explanation
Indices: 204154091--204154431 Score: 478
Period size: 171 Copynumber: 2.0 Consensus size: 170
204154081 TGTGAAAGAG
*
204154091 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATTGTGATAAGGC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGATGTATATATTGTGATAAGGC
* *
204154156 CTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGC
66 CTAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGC
*
204154221 TAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
131 T-ATGTGAAACAGATGTGTGATATGTATATGTGGTAAAGCC
* *
204154262 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATA-TGT-ATA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG--A-AGATGTAT-ATATTGTGATA
* * * *
204154325 TGTG-GTAA-AGCCGAATG-GCT-AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
62 AG-GCCTAATAGCCG-ATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCG
*
204154386 AAGGGCTATGTGAAATAGATGTGTGATATGTATATGTGGTAAAGCC
125 AAGGGCTATGTGAAACAGATGTGTGATATGTATATGTGGTAAAGCC
204154432 GAATGGCTAA
Statistics
Matches: 153, Mismatches: 11, Indels: 13
0.86 0.06 0.07
Matches are distributed among these distances:
170 37 0.24
171 87 0.57
172 6 0.04
173 11 0.07
174 9 0.06
175 3 0.02
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (170 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGATGTATATATTGTGATAAGGC
CTAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGC
TATGTGAAACAGATGTGTGATATGTATATGTGGTAAAGCC
Found at i:204154411 original size:95 final size:96
Alignment explanation
Indices: 204154297--204154495 Score: 355
Period size: 95 Copynumber: 2.1 Consensus size: 96
204154287 CGATGTGATG
*
204154297 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AATGTGAAACAGATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
204154362 TGATATGTATATGTGGTAAAGCCGAAGGGCT
66 TGATATGTATATGTGGTAAAGCCGAAGGGCT
*
204154393 -ATGTGAAATAGATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
1 AATGTGAAACAGATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
* *
204154457 TGATATGTATGTGTGGTAAAGCCGAATGGCT
66 TGATATGTATATGTGGTAAAGCCGAAGGGCT
204154488 AATGTGAA
1 AATGTGAA
204154496 TGTTGTAACA
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
95 91 0.93
96 7 0.07
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (96 bp):
AATGTGAAACAGATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTG
TGATATGTATATGTGGTAAAGCCGAAGGGCT
Found at i:204154578 original size:35 final size:36
Alignment explanation
Indices: 204154534--204154657 Score: 207
Period size: 36 Copynumber: 3.4 Consensus size: 36
204154524 AACTTGGAAA
*
204154534 TATGTTCCGGGTGAGACC-ATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCGATGACTACGTGTGGAGAT
204154570 TATGTCCGGGTAAGACCCGATGACTAC-TGTGGAGAT
1 TATGTCCGGGTAAGA-CCGATGACTACGTGTGGAGAT
204154606 TATGTCCGGGTAAGACCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCGATGACTACGTGTGGAGAT
204154642 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
204154658 TTCGTAATAA
Statistics
Matches: 84, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
35 21 0.25
36 55 0.65
37 8 0.10
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAAGACCGATGACTACGTGTGGAGAT
Found at i:204156601 original size:40 final size:40
Alignment explanation
Indices: 204156555--204156813 Score: 228
Period size: 40 Copynumber: 6.5 Consensus size: 40
204156545 TGAATGATAC
**
204156555 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * * *
204156595 CTGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
204156635 CCGGG-TTAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* * *
204156674 CC-GGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
204156713 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
204156753 CC-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
204156792 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
204156814 ATCATGCTGG
Statistics
Matches: 188, Mismatches: 21, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
38 3 0.02
39 83 0.44
40 100 0.53
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:204156671 original size:39 final size:39
Alignment explanation
Indices: 204156603--204156677 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
204156593 ATCTGGGCTA
* *
204156603 AGACCCGAAGGCATTTGTGTGAGTTGTTATACCCGGGTT
1 AGACCCGAAGGCAATTGTGTGAGTGGTTATACCCGGGTT
* *
204156642 AGACCCGAAGGCAATTGTGCT-TGTGGTTATATCCGG
1 AGACCCGAAGGCAATTGTG-TGAGTGGTTATACCCGG
204156678 CTAAATTCCG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 30 0.97
40 1 0.03
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (39 bp):
AGACCCGAAGGCAATTGTGTGAGTGGTTATACCCGGGTT
Found at i:204156689 original size:39 final size:39
Alignment explanation
Indices: 204156671--204156813 Score: 232
Period size: 40 Copynumber: 3.6 Consensus size: 39
204156661 CTTGTGGTTA
*
204156671 TATCCGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
204156710 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
204156750 TATCCGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* *
204156789 TATCCGGGCTAGGTCCCGAAGAGCA
1 TATCC-GGCTAAGTTCCGAAGAGCA
204156814 ATCATGCTGG
Statistics
Matches: 97, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 44 0.45
40 53 0.55
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:204156729 original size:79 final size:80
Alignment explanation
Indices: 204156645--204156815 Score: 240
Period size: 79 Copynumber: 2.2 Consensus size: 80
204156635 CCGGGTTAGA
* * *
204156645 CCCGAAG-GCAATT-GTGCTTGTGGTTATATCCGGCTAAATTCCGAAGAGCATTCGTGCTAGTGA
1 CCCGAAGAGCAATTCGTGCTAGT-GATATATCCGACTAAATTCCGAAGAGCATTCGTGCTAGTGA
204156708 TGTATCCGGACTAAGT
65 TGTATCCGGACTAAGT
* * *
204156724 TCCGAAGAGC-ATTCGTGCTAGTGATGTATCCGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 CCCGAAGAGCAATTCGTGCTAGTGATATATCCGACTAAATTCCGAAGAGCATTCGTGCTAGTGAT
* *
204156788 GTATCCGGGCTAGGT
66 GTATCCGGACTAAGT
204156803 CCCGAAGAGCAAT
1 CCCGAAGAGCAAT
204156816 CATGCTGGTG
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 69 0.86
80 11 0.14
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
CCCGAAGAGCAATTCGTGCTAGTGATATATCCGACTAAATTCCGAAGAGCATTCGTGCTAGTGAT
GTATCCGGACTAAGT
Found at i:204162531 original size:40 final size:40
Alignment explanation
Indices: 204162425--204162608 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
204162415 TGCTGGAAAT
* * * * * **
204162425 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
204162465 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
204162505 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
204162543 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
204162584 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
204162609 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:204165355 original size:28 final size:27
Alignment explanation
Indices: 204165292--204165361 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
204165282 ATAGTGAGTC
204165292 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
204165319 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
204165347 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
204165362 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:204170895 original size:18 final size:18
Alignment explanation
Indices: 204170872--204170906 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
204170862 TGGTGGATGC
204170872 ATAAACCGAAAAC-ACACG
1 ATAAACC-AAAACTACACG
204170890 ATAAACCAAAACTACAC
1 ATAAACCAAAACTACAC
204170907 CAAAACAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.57, C:0.29, G:0.06, T:0.09
Consensus pattern (18 bp):
ATAAACCAAAACTACACG
Found at i:204170912 original size:17 final size:18
Alignment explanation
Indices: 204170871--204170912 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
204170861 CTGGTGGATG
204170871 CATAAACCGAAAACACAC
1 CATAAACCGAAAACACAC
*
204170889 GATAAACC-AAAACTACAC
1 CATAAACCGAAAAC-ACAC
204170907 CA-AAAC
1 CATAAAC
204170913 AAGCTCAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.57, C:0.31, G:0.05, T:0.07
Consensus pattern (18 bp):
CATAAACCGAAAACACAC
Found at i:204172222 original size:18 final size:18
Alignment explanation
Indices: 204172199--204172242 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
204172189 TAGGTCATTG
204172199 AACTTAGTGTTTTTATTA
1 AACTTAGTGTTTTTATTA
*
204172217 AACTTAGTGTTTTTGTTA
1 AACTTAGTGTTTTTATTA
204172235 AACTTAGT
1 AACTTAGT
204172243 AGTGGTGGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.27, C:0.07, G:0.14, T:0.52
Consensus pattern (18 bp):
AACTTAGTGTTTTTATTA
Found at i:204174094 original size:17 final size:17
Alignment explanation
Indices: 204174072--204174105 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
204174062 TTTAGGATAA
*
204174072 ATTTTGATTGATTTATC
1 ATTTTGATTGATATATC
204174089 ATTTTGATTGATATATC
1 ATTTTGATTGATATATC
204174106 TTGAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (17 bp):
ATTTTGATTGATATATC
Found at i:204177626 original size:24 final size:26
Alignment explanation
Indices: 204177599--204177659 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
204177589 TCAGTAAACC
*
204177599 CATACGAGCTGAGA-ATTG-TAAGCT
1 CATACGAGCTGAGATATCGATAAGCT
*
204177623 CATACGAGCTGATATATCGATAAGCT
1 CATACGAGCTGAGATATCGATAAGCT
*
204177649 CATATGAGCTG
1 CATACGAGCTG
204177660 TGGTGAGTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 13 0.41
25 3 0.09
26 16 0.50
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (26 bp):
CATACGAGCTGAGATATCGATAAGCT
Found at i:204184651 original size:40 final size:40
Alignment explanation
Indices: 204184606--204184771 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
204184596 CGGAATATAA
204184606 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
204184646 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
204184686 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
204184726 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
204184765 CC-GATAT
1 CCGGATAT
204184772 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
38 5 0.05
39 8 0.08
40 91 0.88
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:204184756 original size:80 final size:78
Alignment explanation
Indices: 204184622--204184771 Score: 187
Period size: 80 Copynumber: 1.9 Consensus size: 78
204184612 ATAATCACGT
*
204184622 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
204184687 CGGATATAGCCACTA
65 C-GATATAGCCACTA
* * ** * *
204184702 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
204184765 CCGATAT
64 CCGATAT
204184772 CATTCAATTG
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
78 5 0.08
79 11 0.18
80 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GATATAGCCACTA
Found at i:204185723 original size:55 final size:55
Alignment explanation
Indices: 204185654--204185759 Score: 135
Period size: 55 Copynumber: 1.9 Consensus size: 55
204185644 CCCCCTTTTC
204185654 CCTTAGTAATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTCTTTCTTT
1 CCTTAGTAATTTCGGCCAAGAAGATGGAG-AAGGATGAACAAATTTTTCTTTCTTT
*** **
204185709 CCTTAGTACA-TTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTCTTT
1 CCTTAGTA-ATTTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTCTTT
204185760 TTTTTTTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
55 40 0.91
56 4 0.09
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (55 bp):
CCTTAGTAATTTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTCTTTCTTT
Found at i:204192105 original size:46 final size:46
Alignment explanation
Indices: 204192055--204192230 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
204192045 TATTTGGGCA
204192055 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
204192101 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
204192148 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
204192194 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
204192231 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:204192210 original size:93 final size:93
Alignment explanation
Indices: 204192051--204192222 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
204192041 TGGATATTTG
* *
204192051 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
204192116 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
204192144 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
204192209 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
204192223 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:204195223 original size:15 final size:15
Alignment explanation
Indices: 204195184--204195263 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
204195174 GTATCTTGGG
*
204195184 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
204195199 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
204195214 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
204195229 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
204195244 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
204195258 TTTCTT
1 TTTCTT
204195264 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:204195253 original size:30 final size:30
Alignment explanation
Indices: 204195175--204195262 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
204195165 CATAGTATCG
* * *
204195175 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
204195205 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
204195235 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
204195263 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:204202145 original size:2 final size:2
Alignment explanation
Indices: 204202140--204202169 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
204202130 TCACACATAC
204202140 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
204202170 AACATACATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:204208455 original size:46 final size:46
Alignment explanation
Indices: 204208307--204208515 Score: 158
Period size: 46 Copynumber: 4.5 Consensus size: 46
204208297 TGTGAGCTAA
* * * * *
204208307 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAG
1 TGTAAGACATGTCTAGGACATGCATAGGCTACGA-GATGATAGCCAG
* * * * * *
204208353 TGTAAGACCATGTCTGGGACATGGCATCA--ATATTGAGACGAGAGCTAG
1 TGTAAGA-CATGTCTAGGACAT-GCAT-AGGCTA-CGAGATGATAGCCAG
* * *
204208401 TGTCAGACATGTCTAGGACCTGCTTAGGCCT-CGAGATG-TAAGCCAG
1 TGTAAGACATGTCTAGGACATGCATAGG-CTACGAGATGAT-AGCCAG
* *
204208447 TGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGATAGTCAG
1 TGTAAGACATGTCTAGGACATGCATAGGCTACGAGATGATAGCCAG
*
204208493 TGTAAGACCATGTCTGGGACATG
1 TGTAAGA-CATGTCTAGGACATG
204208516 GCATCGACTT
Statistics
Matches: 129, Mismatches: 22, Indels: 23
0.74 0.13 0.13
Matches are distributed among these distances:
45 3 0.02
46 63 0.49
47 42 0.33
48 20 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTAGGACATGCATAGGCTACGAGATGATAGCCAG
Found at i:204208530 original size:47 final size:45
Alignment explanation
Indices: 204208307--204208570 Score: 183
Period size: 47 Copynumber: 5.6 Consensus size: 45
204208297 TGTGAGCTAA
* * * *
204208307 TGTAAGACATGTCTGGGACATGCATCGGC-CACATTATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGACTC-GA-GATGATAGCCAG
* * * * * *
204208353 TGTAAGACCATGTCTGGGACATGGCATCAATATTGAGACGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGA-CTCGAGATGATAGCCAG
* * * * * *
204208401 TGTCAGACATGTCTAGGACCTGCTTAGGCCTCGAGATG-TAAGCCAG
1 TGTAAGACATGTCTGGGACATGCAT-CGACTCGAGATGAT-AGCCAG
* * *
204208447 TGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGATAGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGACT-CGAGATGATAGCCAG
* *
204208493 TGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAT-ATGAGCCAA
1 TGTAAGA-CATGTCTGGGACAT-GCATCGACTCGAGATGAT-AGCCAG
* *
204208540 TGTAAGACCATGTGTGGGATATTGCATCGAC
1 TGTAAGA-CATGTCTGGGACA-TGCATCGAC
204208571 ACCTTACCCA
Statistics
Matches: 173, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
45 3 0.02
46 64 0.37
47 76 0.44
48 29 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCGACTCGAGATGATAGCCAG
Found at i:204214946 original size:39 final size:39
Alignment explanation
Indices: 204214891--204215068 Score: 218
Period size: 39 Copynumber: 4.5 Consensus size: 39
204214881 GGACTAAGAT
* * *
204214891 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
**
204214930 CCGAAGATATTTGTGCGAGTTACTAAATCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
204214969 CCGAAGGCATTTGTGCGAGTTACTAAA-CCTGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCC-GGGTTAAG-C
* *
204215009 CCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGGTTAAG-C
*
204215049 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTTGTGCGAGT
204215069 CGTTATATCC
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
38 2 0.02
39 67 0.54
40 46 0.37
41 9 0.07
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
Done.