Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 652 of 770
Found at i:204834449 original size:30 final size:30
Alignment explanation
Indices: 204834415--204834511 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
204834405 AGCTCACTCC
204834415 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
204834445 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
204834475 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
204834505 TAGCTCA
1 TAGCTCA
204834512 TTTTAGTTTA
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:204844445 original size:13 final size:13
Alignment explanation
Indices: 204844427--204844451 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
204844417 AATAGTTGTG
204844427 TGTTATTTAATTA
1 TGTTATTTAATTA
204844440 TGTTATTTAATT
1 TGTTATTTAATT
204844452 TTGTAGGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:204848694 original size:10 final size:10
Alignment explanation
Indices: 204848681--204848726 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
204848671 AGCTCACTTG
204848681 AGCTCGTTTT
1 AGCTCGTTTT
*
204848691 AGCTCGTTTG
1 AGCTCGTTTT
*
204848701 AGCTCGAATTT
1 AGCTCG-TTTT
*
204848712 AGCTCGTTTC
1 AGCTCGTTTT
204848722 AGCTC
1 AGCTC
204848727 ATTCCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (10 bp):
AGCTCGTTTT
Found at i:204848714 original size:21 final size:20
Alignment explanation
Indices: 204848678--204848726 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
204848668 ATCAGCTCAC
*
204848678 TTGAGCTCGTTTTAGCTCGT
1 TTGAGCTCGATTTAGCTCGT
204848698 TTGAGCTCGAATTTAGCTCGT
1 TTGAGCTCG-ATTTAGCTCGT
*
204848719 TTCAGCTC
1 TTGAGCTC
204848727 ATTCCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.14, C:0.22, G:0.22, T:0.41
Consensus pattern (20 bp):
TTGAGCTCGATTTAGCTCGT
Found at i:204848969 original size:13 final size:13
Alignment explanation
Indices: 204848951--204848975 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
204848941 AATAGTTGTG
204848951 TGTTATTTAATTA
1 TGTTATTTAATTA
204848964 TGTTATTTAATT
1 TGTTATTTAATT
204848976 TTGTAGGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:204855912 original size:28 final size:29
Alignment explanation
Indices: 204855857--204855916 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
204855847 TAGTCCACAC
*
204855857 ATTTCATTTATTTTACATTTTAGTCCCTCA
1 ATTTCATTTATTTTACAATTTAGTCCCT-A
204855887 ATTT-ATTT-TTTTACAAATTTAG-CCCTA
1 ATTTCATTTATTTTAC-AATTTAGTCCCTA
204855914 ATT
1 ATT
204855917 ACTCAAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 4 0.14
28 10 0.36
29 10 0.36
30 4 0.14
ACGTcount: A:0.27, C:0.17, G:0.03, T:0.53
Consensus pattern (29 bp):
ATTTCATTTATTTTACAATTTAGTCCCTA
Found at i:204856720 original size:18 final size:18
Alignment explanation
Indices: 204856692--204856735 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
204856682 AGTGAAATTT
204856692 ATATGAAAATCCCTGAAGG
1 ATAT-AAAATCCCTGAAGG
* *
204856711 ATTTAAAATCCTTGAAGG
1 ATATAAAATCCCTGAAGG
204856729 ATATAAA
1 ATATAAA
204856736 GTTTCTCGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 19 0.86
19 3 0.14
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.27
Consensus pattern (18 bp):
ATATAAAATCCCTGAAGG
Found at i:204858712 original size:20 final size:19
Alignment explanation
Indices: 204858678--204858717 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
204858668 ATGTTTTTAT
204858678 AAATATTTTTTTAAT-ATA
1 AAATATTTTTTTAATCATA
204858696 AAATATTTTCATTTAATCATA
1 AAATATTTT--TTTAATCATA
204858717 A
1 A
204858718 TGTGAGTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.47
20 6 0.32
21 4 0.21
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
AAATATTTTTTTAATCATA
Found at i:204861996 original size:27 final size:27
Alignment explanation
Indices: 204861966--204862096 Score: 190
Period size: 27 Copynumber: 4.8 Consensus size: 27
204861956 TAAATGATAG
*
204861966 AATGACTATTTTGCCCTTATGTGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
*
204861993 AATGATTGTTTTGCCCTTATGTGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
*
204862020 AATGACTGTTTTGCCCTTATATGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
*
204862047 AATGACTGGTTTGCCCTTATGTGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
* *
204862074 GATGACTGCTTTGCTCCTATATG
1 AATGACTGTTTTGC-CCT-TATG
204862097 CAGTATATAT
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 87 0.93
28 3 0.03
29 4 0.04
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.40
Consensus pattern (27 bp):
AATGACTGTTTTGCCCTTATGTGGTAA
Found at i:204866173 original size:29 final size:29
Alignment explanation
Indices: 204866141--204866272 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
204866131 ATAGTGAATC
204866141 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
204866170 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
204866200 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
204866229 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
204866258 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
204866273 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:204866282 original size:59 final size:59
Alignment explanation
Indices: 204866141--204866272 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
204866131 ATAGTGAATC
204866141 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
204866200 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
204866258 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
204866273 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:204867594 original size:19 final size:18
Alignment explanation
Indices: 204867570--204867605 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
204867560 CCCCCTTTTT
*
204867570 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
204867589 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
204867606 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:204873868 original size:29 final size:29
Alignment explanation
Indices: 204873836--204873967 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
204873826 ATAGTGAATC
204873836 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
204873865 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
204873895 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
204873924 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
204873953 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
204873968 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:204873977 original size:59 final size:59
Alignment explanation
Indices: 204873836--204873967 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
204873826 ATAGTGAATC
204873836 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
204873895 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
204873953 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
204873968 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:204875290 original size:19 final size:18
Alignment explanation
Indices: 204875266--204875301 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
204875256 CCCCCTTTTT
*
204875266 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
204875285 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
204875302 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:204877356 original size:27 final size:27
Alignment explanation
Indices: 204877326--204877479 Score: 164
Period size: 27 Copynumber: 5.5 Consensus size: 27
204877316 ATAGTGAATC
204877326 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
204877353 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
204877381 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * *
204877408 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* **
204877437 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
204877466 TGCACACTTAGTGC
1 CGCACACTTAGTGC
204877480 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 40 0.37
28 27 0.25
29 40 0.37
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:204877373 original size:29 final size:28
Alignment explanation
Indices: 204877326--204877479 Score: 145
Period size: 29 Copynumber: 5.5 Consensus size: 28
204877316 ATAGTGAATC
204877326 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* * **
204877353 CGCACACATAGTGC-TATATAATCAAATT
1 CGCACACTTAGTGCATATAAAATC-AGCT
204877381 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* ** *
204877408 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGC-ATATAAAATCAGCT
**
204877437 CGCACACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTG-CATATAAAAT-CAGCT
*
204877466 TGCACACTTAGTGC
1 CGCACACTTAGTGC
204877480 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
27 36 0.34
28 28 0.26
29 42 0.39
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCATATAAAATCAGCT
Found at i:204877397 original size:55 final size:55
Alignment explanation
Indices: 204877326--204877429 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
204877316 ATAGTGAATC
204877326 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
204877381 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
204877430 TTGAGCTCGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:204878127 original size:4 final size:4
Alignment explanation
Indices: 204878113--204878148 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
204878103 TGATGGTCGA
* *
204878113 ATAT GTAT ATAT ATAT ATAT ATAT ATAT ATAA ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
204878149 CAACTATGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (4 bp):
ATAT
Found at i:204878127 original size:6 final size:6
Alignment explanation
Indices: 204878113--204878148 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
204878103 TGATGGTCGA
* *
204878113 ATATGT ATATAT ATATAT ATATAT ATATAT AAATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
204878149 CAACTATGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (6 bp):
ATATAT
Found at i:204881039 original size:31 final size:31
Alignment explanation
Indices: 204880997--204881056 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
204880987 AGCAGCAATG
204880997 TGAAAAAAATTGCTAAATCTAAGACCTAATA
1 TGAAAAAAATTGCTAAATCTAAGACCTAATA
* * *
204881028 TGAAAATAATTGCTAAATTTAATACCTAA
1 TGAAAAAAATTGCTAAATCTAAGACCTAA
204881057 CTTAGACAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.50, C:0.12, G:0.08, T:0.30
Consensus pattern (31 bp):
TGAAAAAAATTGCTAAATCTAAGACCTAATA
Found at i:204889158 original size:43 final size:41
Alignment explanation
Indices: 204889092--204889249 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 41
204889082 ATGTGATTTT
* * *
204889092 CGTGTAAGAGCACGTTTGAGACATTGGCATCGATTTGAAATTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATTTG--ATTA
* ** * *
204889135 CGTGTAAGACCATGTCTGGGACATCAGCATCATATTTGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATC-GATTTGATTA
* *
204889177 CGTGTAAGACC-CTGTTTGGGACAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCG--ATTTGATTA
* * *
204889220 CATGTATGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
204889250 TATACGAGCT
Statistics
Matches: 90, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
42 28 0.31
43 56 0.62
44 6 0.07
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (41 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTTGATTA
Found at i:204889186 original size:42 final size:43
Alignment explanation
Indices: 204889131--204889241 Score: 136
Period size: 42 Copynumber: 2.6 Consensus size: 43
204889121 TCGATTTGAA
204889131 ATTACGTGTAAGACCATGTCTGGGACA-TCAGCATC-ATATTTG
1 ATTACGTGTAAGACCATGTCTGGGACAGT-AGCATCGATATTTG
* * * *
204889173 ATTTCGTGTAAGACCCTGTTTGGGACAGTGGCATCGATATTTG
1 ATTACGTGTAAGACCATGTCTGGGACAGTAGCATCGATATTTG
* * *
204889216 ATTACATGTATGACCACGTCTGGGAC
1 ATTACGTGTAAGACCATGTCTGGGAC
204889242 GTTGGCATTA
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
42 29 0.51
43 28 0.49
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGGGACAGTAGCATCGATATTTG
Found at i:204889237 original size:85 final size:85
Alignment explanation
Indices: 204889080--204889241 Score: 204
Period size: 85 Copynumber: 1.9 Consensus size: 85
204889070 GATTTTCGAT
* *
204889080 ATATGTGATTTTCGTGTAAGAGCACGTTTGAGACATTGGCATCGATTTGAAATTACGTGTAAGAC
1 ATATGTGATTTTCGTGTAAGAGCACGTTTGAGACAGTGGCATCGATTTG-AATTACATGTAAGAC
*
204889145 CATGTCTGGGACATCAGCATC
65 CACGTCTGGGACATCAGCATC
* * * *
204889166 ATATTTGA-TTTCGTGTAAGA-CCCTGTTTGGGACAGTGGCATCGATATTTG-ATTACATGTATG
1 ATATGTGATTTTCGTGTAAGAGCAC-GTTTGAGACAGTGGCATCG--ATTTGAATTACATGTAAG
204889228 ACCACGTCTGGGAC
63 ACCACGTCTGGGAC
204889242 GTTGGCATTA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
84 2 0.03
85 52 0.79
86 7 0.11
87 5 0.08
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (85 bp):
ATATGTGATTTTCGTGTAAGAGCACGTTTGAGACAGTGGCATCGATTTGAATTACATGTAAGACC
ACGTCTGGGACATCAGCATC
Found at i:204891054 original size:15 final size:15
Alignment explanation
Indices: 204891034--204891063 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
204891024 GTATATTAGA
204891034 ACCAATCCAGCTGTG
1 ACCAATCCAGCTGTG
204891049 ACCAATCCAGCTGTG
1 ACCAATCCAGCTGTG
204891064 CCATAACCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.20, T:0.20
Consensus pattern (15 bp):
ACCAATCCAGCTGTG
Found at i:204900477 original size:15 final size:15
Alignment explanation
Indices: 204900457--204900525 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
204900447 GTATCTTGGG
204900457 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
204900472 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
204900487 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
204900502 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
204900517 TTTCTTTAT
1 TTTCTTTAT
204900526 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:204900526 original size:30 final size:30
Alignment explanation
Indices: 204900448--204900535 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
204900438 CATAGTATCG
* * * *
204900448 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
204900478 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
204900508 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
204900536 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:204902962 original size:46 final size:46
Alignment explanation
Indices: 204902907--204903087 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
204902897 TAGGATGGTT
204902907 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
204902953 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
204902999 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
204903046 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
204903088 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:204903068 original size:93 final size:93
Alignment explanation
Indices: 204902909--204903079 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
204902899 GGATGGTTGA
* *
204902909 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
204902974 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
204903002 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
204903067 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
204903080 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:204915833 original size:24 final size:22
Alignment explanation
Indices: 204915785--204915846 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 22
204915775 ACACATATGT
204915785 ATAATAAT-GATGAAAATAATA
1 ATAATAATAGATGAAAATAATA
204915806 ATAATAATAG-TGAAAATAAATA
1 ATAATAATAGATGAAAAT-AATA
*
204915828 A-GATAATA-AT-AAAATAATA
1 ATAATAATAGATGAAAATAATA
204915847 GTAAAAAGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
19 4 0.11
20 5 0.14
21 22 0.59
22 6 0.16
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (22 bp):
ATAATAATAGATGAAAATAATA
Found at i:204916019 original size:25 final size:25
Alignment explanation
Indices: 204915951--204916019 Score: 58
Period size: 25 Copynumber: 2.8 Consensus size: 25
204915941 TACGAAGAAG
*
204915951 TATATAT-AATATA-ATAATAATAT
1 TATATATAAATATATAAAATAATAT
204915974 TA-A-ATACAATA-ATTAAAAATAATAT
1 TATATATA-AATATA-T-AAAATAATAT
*
204915999 TATATATAAATATATACAATA
1 TATATATAAATATATAAAATA
204916020 TTCACATGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
21 2 0.06
22 2 0.06
23 6 0.17
25 16 0.44
26 6 0.17
27 4 0.11
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (25 bp):
TATATATAAATATATAAAATAATAT
Found at i:204918093 original size:71 final size:71
Alignment explanation
Indices: 204918004--204918178 Score: 221
Period size: 71 Copynumber: 2.5 Consensus size: 71
204917994 GTTAAAAAGA
* * *
204918004 CTCAACTCACCTCTCGCAATTTGA-TTGACTTTTGAAA-ATAGAATTTGAAAATACCTTAGCGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGACTTTTGAAACATA-AA-TTGAAAATACCTCAACGTG
204918067 CCGCGAGG
64 CCGCGAGG
* * * *
204918075 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTC
1 CTCAACTCACCTCTCGCAATATGAGTTGACTTTTGAAACATAAATTGAAAATACCTCAACGTGCC
**
204918140 TTGAGG
66 GCGAGG
*
204918146 CTCAACTCACCTCTCGCAATATGAGCTGA-TTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGACTTTT
204918179 CTTGGAAAAC
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
70 4 0.04
71 70 0.77
72 14 0.15
73 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (71 bp):
CTCAACTCACCTCTCGCAATATGAGTTGACTTTTGAAACATAAATTGAAAATACCTCAACGTGCC
GCGAGG
Found at i:204918312 original size:160 final size:160
Alignment explanation
Indices: 204918043--204918429 Score: 704
Period size: 160 Copynumber: 2.4 Consensus size: 160
204918033 TTTTGAAAAT
* *
204918043 AGAATTTGAAAATACCTTAGCGTGCCGC-GAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
1 AGAAATTGAAAATACCTCAGCGTGCC-CTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
204918107 TTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
65 TTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
*
204918172 TGATTTTCTTGGAAAACATGAATTAAAAAGC
130 TAATTTTCTTGGAAAACATGAATTAAAAAGC
*
204918203 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
*
204918268 TGAAACATACATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
66 TGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
204918333 AATTTTCTTGGAAAACATGAATTAAAAAGC
131 AATTTTCTTGGAAAACATGAATTAAAAAGC
*
204918363 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCTACTCACTTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
204918428 TG
66 TG
204918430 GAAAAAACAA
Statistics
Matches: 219, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
159 1 0.00
160 218 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (160 bp):
AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
TGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCT
AATTTTCTTGGAAAACATGAATTAAAAAGC
Found at i:204918338 original size:71 final size:71
Alignment explanation
Indices: 204918207--204918338 Score: 192
Period size: 71 Copynumber: 1.9 Consensus size: 71
204918197 AAAAGCAGAA
* * * *
204918207 ATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGAA
1 ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTAATTTTTGAA
204918272 ACATAC
66 ACATAC
* * * *
204918278 ATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTT
1 ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTAATTTT
204918339 CTTGGAAAAC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
71 53 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (71 bp):
ATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTAATTTTTGAA
ACATAC
Found at i:204930934 original size:24 final size:22
Alignment explanation
Indices: 204930886--204930939 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 22
204930876 ACACATATGT
204930886 ATAATAAT-GATGAAAATAATA
1 ATAATAATAGATGAAAATAATA
204930907 ATAATAATAG-TGAAAATAAATAA
1 ATAATAATAGATGAAAAT-AAT-A
204930930 GATAATAATA
1 -ATAATAATA
204930940 AATATAATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 15 0.52
22 4 0.14
23 1 0.03
24 9 0.31
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (22 bp):
ATAATAATAGATGAAAATAATA
Found at i:204931123 original size:25 final size:25
Alignment explanation
Indices: 204931055--204931123 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
204931045 TACGAAGAAG
*
204931055 TATATAT-AATATA-ATAATAATAT
1 TATATATAAATATATAAAATAATAT
*
204931078 TA-AAATACAATA-ATTAAAATAATAT
1 TATATATA-AATATA-TAAAATAATAT
*
204931103 TATATATAAATATATACAATA
1 TATATATAAATATATAAAATA
204931124 TTCACATGTA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
22 3 0.08
23 3 0.08
24 4 0.11
25 21 0.58
26 5 0.14
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (25 bp):
TATATATAAATATATAAAATAATAT
Found at i:204932139 original size:26 final size:26
Alignment explanation
Indices: 204932082--204932215 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 26
204932072 TGATACAAAT
204932082 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
204932107 TAATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* * *
204932133 TAATAATAGGTTAGGTAAGTGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
204932159 TGATAATAGATTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
204932184 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
204932210 TGATAA
1 TGATAA
204932216 GAATTTCATG
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
25 43 0.43
26 56 0.57
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:204932140 original size:51 final size:50
Alignment explanation
Indices: 204932084--204932215 Score: 201
Period size: 51 Copynumber: 2.6 Consensus size: 50
204932074 ATACAAATTG
* *
204932084 ATAATAGGTTAGGTAAATGTTCATAATAATAGGTTAGGTAAATGTTTCATA
1 ATAATAGGTTAGGTAAATGTTCATGATAATAGATTAGGTAAATG-TTCATA
* *
204932135 ATAATAGGTTAGGTAAGTGTTCCATGATAATAGATTAGGTAAATGTTCATG
1 ATAATAGGTTAGGTAAATGTT-CATGATAATAGATTAGGTAAATGTTCATA
204932186 ATAATAGGTTAGGTAAATGTTTCATGATAA
1 ATAATAGGTTAGGTAAATG-TTCATGATAA
204932216 GAATTTCATG
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
51 51 0.69
52 23 0.31
ACGTcount: A:0.38, C:0.05, G:0.21, T:0.36
Consensus pattern (50 bp):
ATAATAGGTTAGGTAAATGTTCATGATAATAGATTAGGTAAATGTTCATA
Found at i:204933719 original size:23 final size:23
Alignment explanation
Indices: 204933689--204933736 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
204933679 TACCTTGTAT
* **
204933689 GGAAAATTACTGTTATACCCCTA
1 GGAAAATTACCGAAATACCCCTA
204933712 GGAAAATTACCGAAATACCCCTA
1 GGAAAATTACCGAAATACCCCTA
204933735 GG
1 GG
204933737 GTTAAATTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23
Consensus pattern (23 bp):
GGAAAATTACCGAAATACCCCTA
Found at i:204934281 original size:136 final size:136
Alignment explanation
Indices: 204934001--204934285 Score: 527
Period size: 135 Copynumber: 2.1 Consensus size: 136
204933991 GAGTAGTCTC
204934001 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
204934066 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
204934131 CTGTTA
131 CTGTTA
*
204934137 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
204934201 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAAT-TGAAAAGGGCTCTGGCCCAGTACC
204934266 ACTGTTA
130 ACTGTTA
**
204934273 CCTGAATGGGCTT
1 CCCAAATGGGCTT
204934286 AGGCCCAATG
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
135 83 0.57
136 62 0.43
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:204939339 original size:24 final size:25
Alignment explanation
Indices: 204939254--204939383 Score: 196
Period size: 25 Copynumber: 5.2 Consensus size: 25
204939244 TGATACAAAT
204939254 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
204939279 TAATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
204939305 T-ATAATAGGTTAGGT-AATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
204939329 TGATAAT-GGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
204939353 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
204939378 TGATAA
1 TGATAA
204939384 GAATTTCATG
Statistics
Matches: 99, Mismatches: 1, Indels: 10
0.90 0.01 0.09
Matches are distributed among these distances:
23 2 0.02
24 37 0.37
25 55 0.56
26 5 0.05
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:204939343 original size:49 final size:50
Alignment explanation
Indices: 204939254--204939383 Score: 196
Period size: 49 Copynumber: 2.6 Consensus size: 50
204939244 TGATACAAAT
*
204939254 TGATAATAGGTTAGGTAAATGTTCATAATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATG-TTCA
204939305 T-ATAATAGGTTAGGT-AATGTTCCATGATAAT-GGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTT-CATGATAATAGGTTAGGTAAATGTTCA
204939353 TGATAAT-GGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATG-TTCATGATAA
204939384 GAATTTCATG
Statistics
Matches: 74, Mismatches: 1, Indels: 10
0.87 0.01 0.12
Matches are distributed among these distances:
48 13 0.18
49 36 0.49
50 24 0.32
51 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (50 bp):
TGATAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTCA
Found at i:204940902 original size:25 final size:26
Alignment explanation
Indices: 204940861--204940912 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
204940851 ATTTACAGTT
204940861 TACCCCTAGGTGAAAATT-ACCGAAA
1 TACCCCTAGGTGAAAATTGACCGAAA
* *
204940886 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTG-AAAATTGACCGAAA
204940912 T
1 T
204940913 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 15 0.65
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGTGAAAATTGACCGAAA
Found at i:204949740 original size:30 final size:30
Alignment explanation
Indices: 204949706--204949802 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
204949696 TAAACTAAAA
204949706 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
204949736 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
204949766 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
204949796 TGAGCTA
1 TGAGCTA
204949803 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:204952061 original size:30 final size:30
Alignment explanation
Indices: 204951991--204952072 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
204951981 TTTTGTTTCA
* *
204951991 ATTTCTTTTTCATCTTCTTTTTCACTCTCAG
1 ATTTCTTTTTCTTC-TCTTTTTCAATCTCAG
204952022 ATTTC-TTTTCGTTCTCTTTTTCAATCTCA-
1 ATTTCTTTTTC-TTCTCTTTTTCAATCTCAG
* *
204952051 TTTTCTTTTTCATTTTCTTTTT
1 ATTTCTTTTTC-TTCTCTTTTT
204952073 GCTTTTCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 4 0.09
30 33 0.75
31 7 0.16
ACGTcount: A:0.11, C:0.22, G:0.02, T:0.65
Consensus pattern (30 bp):
ATTTCTTTTTCTTCTCTTTTTCAATCTCAG
Found at i:204952072 original size:18 final size:18
Alignment explanation
Indices: 204952023--204952078 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
204952013 CACTCTCAGA
* *
204952023 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
204952040 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
204952058 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
204952077 TT
1 TT
204952079 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:204952079 original size:12 final size:12
Alignment explanation
Indices: 204952048--204952072 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
204952038 TTTTTCAATC
204952048 TCATTTTCTTTT
1 TCATTTTCTTTT
204952060 TCATTTTCTTTT
1 TCATTTTCTTTT
204952072 T
1 T
204952073 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:204952104 original size:12 final size:11
Alignment explanation
Indices: 204952073--204952100 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
204952063 TTTTCTTTTT
204952073 GCTTTTCAAAG
1 GCTTTTCAAAG
204952084 GCTTTTCAAAG
1 GCTTTTCAAAG
204952095 GCTTTT
1 GCTTTT
204952101 TCAAGTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (11 bp):
GCTTTTCAAAG
Found at i:204952162 original size:5 final size:5
Alignment explanation
Indices: 204952152--204952206 Score: 60
Period size: 5 Copynumber: 11.0 Consensus size: 5
204952142 CTCTTGCCTC
* *
204952152 TCTTT TCTTT T-ATT TCTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT TCTTT
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT T-C-TTT TCTTT TCTTT
204952202 TCTTT
1 TCTTT
204952207 ATTTTCTCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
4 6 0.14
5 30 0.71
6 2 0.05
7 4 0.10
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (5 bp):
TCTTT
Found at i:204952169 original size:14 final size:13
Alignment explanation
Indices: 204952152--204952213 Score: 65
Period size: 14 Copynumber: 4.6 Consensus size: 13
204952142 CTCTTGCCTC
204952152 TCTTTTCTTTTATT
1 TCTTTTCTTTT-TT
204952166 TCTTTTCTTTTTCT
1 TCTTTTCTTTTT-T
204952180 TCTTTTGC--TTTT
1 TCTTTT-CTTTTTT
204952192 TCTTTTCTTTTCTT
1 TCTTTTCTTTT-TT
*
204952206 TATTTTCT
1 TCTTTTCT
204952214 CTTTACAAGA
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
11 1 0.02
12 7 0.17
13 6 0.14
14 27 0.64
15 1 0.02
ACGTcount: A:0.03, C:0.18, G:0.02, T:0.77
Consensus pattern (13 bp):
TCTTTTCTTTTTT
Found at i:204952190 original size:15 final size:14
Alignment explanation
Indices: 204952152--204952206 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 14
204952142 CTCTTGCCTC
204952152 TCTTTTCTTTTAT-T
1 TCTTTTCTTTT-TCT
204952166 TCTTTTCTTTTTCT
1 TCTTTTCTTTTTCT
204952180 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
204952197 TCTTTTCTTT
1 TCTTTTCTTT
204952207 ATTTTCTCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.03
14 18 0.49
15 7 0.19
16 4 0.11
17 7 0.19
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:204954808 original size:30 final size:30
Alignment explanation
Indices: 204954774--204954870 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
204954764 TAAACTAAAA
204954774 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
204954804 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
204954834 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
204954864 TGAGCTA
1 TGAGCTA
204954871 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:204958114 original size:12 final size:13
Alignment explanation
Indices: 204958087--204958120 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
204958077 ATACAAGTTT
*
204958087 GAAAAAAAATTCC
1 GAAAAAAAAATCC
204958100 GAAAAAAAAAT-C
1 GAAAAAAAAATCC
204958112 GAAAAAAAA
1 GAAAAAAAA
204958121 GACTTTTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.74, C:0.09, G:0.09, T:0.09
Consensus pattern (13 bp):
GAAAAAAAAATCC
Found at i:204958946 original size:14 final size:14
Alignment explanation
Indices: 204958905--204958946 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
204958895 ACTTTGTCTA
204958905 CTCTTTTTCTTTTTG
1 CTCTTTTTC-TTTTG
*
204958920 -TCTTTTTATTTTG
1 CTCTTTTTCTTTTG
204958933 CTCTTTTTCTTTTG
1 CTCTTTTTCTTTTG
204958947 ATCTCTCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 5 0.21
14 19 0.79
ACGTcount: A:0.02, C:0.17, G:0.07, T:0.74
Consensus pattern (14 bp):
CTCTTTTTCTTTTG
Found at i:204963234 original size:30 final size:30
Alignment explanation
Indices: 204963149--204963245 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
204963139 TAAACTAAAA
* *
204963149 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * *
204963179 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
*
204963209 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
204963238 ATGAGCTA
1 -TGAGCTA
204963246 GGAGTGAGCT
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:204965627 original size:10 final size:10
Alignment explanation
Indices: 204965614--204965650 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
204965604 AAGCTCGGTT
204965614 GAGCTGAAAC
1 GAGCTGAAAC
204965624 GAGCTGAAAC
1 GAGCTGAAAC
* *
204965634 GAGCTCAAAT
1 GAGCTGAAAC
204965644 GAGCTGA
1 GAGCTGA
204965651 GTTGAGCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.38, C:0.19, G:0.30, T:0.14
Consensus pattern (10 bp):
GAGCTGAAAC
Found at i:204965657 original size:20 final size:20
Alignment explanation
Indices: 204965611--204965658 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
204965601 AGTAAGCTCG
*
204965611 GTTGAGCTGAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
*** *
204965631 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
204965651 GTTGAGCT
1 GTTGAGCT
204965659 GGACGGAGCT
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:204967268 original size:18 final size:19
Alignment explanation
Indices: 204967245--204967283 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
204967235 TTTATCTCAA
*
204967245 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
204967263 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
204967282 TT
1 TT
204967284 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:204967299 original size:48 final size:49
Alignment explanation
Indices: 204967247--204967350 Score: 115
Period size: 48 Copynumber: 2.2 Consensus size: 49
204967237 TATCTCAATT
* * *
204967247 TCTTTTTCCACTCT-TTTTTC-TTGTTCACATTCTTTTTCTCTCTCAAAC
1 TCTTTTTCCACTCTCTTTTTCAAT-CTCACATTCTTTTTCACTCTCAAAC
* ** *
204967295 TCTTTTT-CATTCTCTTTTTCAATCTCATTTTCTTTTTCACTCTCAATC
1 TCTTTTTCCACTCTCTTTTTCAATCTCACATTCTTTTTCACTCTCAAAC
204967343 TCTTTTTC
1 TCTTTTTC
204967351 TTTTTCTTTC
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
47 5 0.11
48 40 0.87
49 1 0.02
ACGTcount: A:0.12, C:0.28, G:0.01, T:0.59
Consensus pattern (49 bp):
TCTTTTTCCACTCTCTTTTTCAATCTCACATTCTTTTTCACTCTCAAAC
Found at i:204967322 original size:18 final size:18
Alignment explanation
Indices: 204967301--204967350 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
204967291 AAACTCTTTT
204967301 TCATTCTCTTTTTCAATC
1 TCATTCTCTTTTTCAATC
* *
204967319 TCATTTTCTTTTTCACTC
1 TCATTCTCTTTTTCAATC
*
204967337 TCAATCTCTTTTTC
1 TCATTCTCTTTTTC
204967351 TTTTTCTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.14, C:0.28, G:0.00, T:0.58
Consensus pattern (18 bp):
TCATTCTCTTTTTCAATC
Found at i:204967340 original size:24 final size:24
Alignment explanation
Indices: 204967276--204967357 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
204967266 CTTGTTCACA
*
204967276 TTCTTTTTCTCTCTCAAACTCTTT
1 TTCTTTTTCTCTCTCAATCTCTTT
* * * * *
204967300 TTCATTCTCTTTTTCAATCTCATT
1 TTCTTTTTCTCTCTCAATCTCTTT
*
204967324 TTCTTTTTCACTCTCAATCTCTTT
1 TTCTTTTTCTCTCTCAATCTCTTT
204967348 TTCTTTTTCT
1 TTCTTTTTCT
204967358 TTCATTTCTT
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.12, C:0.27, G:0.00, T:0.61
Consensus pattern (24 bp):
TTCTTTTTCTCTCTCAATCTCTTT
Found at i:204969019 original size:14 final size:14
Alignment explanation
Indices: 204968997--204969044 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
204968987 ACCTAAACCG
* *
204968997 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
204969011 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
204969025 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
204969039 ACCATT
1 ACCATT
204969045 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:204969436 original size:12 final size:12
Alignment explanation
Indices: 204969415--204969446 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
204969405 TATACAAGTT
204969415 AAAA-AAAATCA
1 AAAATAAAATCA
204969426 AAAATAAAATCA
1 AAAATAAAATCA
204969438 AAAATAAAA
1 AAAATAAAA
204969447 AAATCGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.12
Consensus pattern (12 bp):
AAAATAAAATCA
Found at i:204975379 original size:14 final size:12
Alignment explanation
Indices: 204975358--204975394 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 12
204975348 TTATACAAGT
204975358 TTGAAAAAAAAA
1 TTGAAAAAAAAA
204975370 TTCCGAAAAAAAAA
1 TT--GAAAAAAAAA
204975384 TTGAAAAAAAA
1 TTGAAAAAAAA
204975395 GTGATTTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 11 0.48
14 12 0.52
ACGTcount: A:0.70, C:0.05, G:0.08, T:0.16
Consensus pattern (12 bp):
TTGAAAAAAAAA
Found at i:204979756 original size:28 final size:29
Alignment explanation
Indices: 204979691--204979791 Score: 134
Period size: 28 Copynumber: 3.5 Consensus size: 29
204979681 ATAGTGAATC
204979691 CGCACACTTAGTGCTATATACATTC-AACT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
204979720 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
204979748 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
204979778 CGCACACTTAGTGC
1 CGCACACTTAGTGC
204979792 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.37
29 20 0.31
30 19 0.29
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:204987654 original size:28 final size:29
Alignment explanation
Indices: 204987589--204987689 Score: 134
Period size: 28 Copynumber: 3.5 Consensus size: 29
204987579 ATAGTGAATC
204987589 CGCACACTTAGTGCTATATACATTC-AACT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
204987618 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
204987646 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
204987676 CGCACACTTAGTGC
1 CGCACACTTAGTGC
204987690 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.37
29 20 0.31
30 19 0.29
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:204988932 original size:17 final size:18
Alignment explanation
Indices: 204988890--204988938 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
204988880 AGTTGAAAAG
204988890 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
204988909 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
204988926 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
204988939 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:204989826 original size:40 final size:40
Alignment explanation
Indices: 204989760--204989926 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
204989750 AAATTGAATG
* * *
204989760 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
204989799 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
204989839 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
204989879 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
204989919 ATATCCGG
1 ATATCCGG
204989927 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:204996928 original size:17 final size:18
Alignment explanation
Indices: 204996886--204996934 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
204996876 AGTTGAAAAG
204996886 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
204996905 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
204996922 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
204996935 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:204997822 original size:40 final size:40
Alignment explanation
Indices: 204997756--204997922 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
204997746 AAATTGAATG
* * *
204997756 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
204997795 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
204997835 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
204997875 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
204997915 ATATCCGG
1 ATATCCGG
204997923 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:205006757 original size:28 final size:29
Alignment explanation
Indices: 205006690--205006790 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
205006680 ATAGTGAATC
*
205006690 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
205006719 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
205006747 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
205006777 CGCACACTTAGTGC
1 CGCACACTTAGTGC
205006791 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:205015798 original size:40 final size:40
Alignment explanation
Indices: 205015753--205015919 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
205015743 CGGAATATAA
205015753 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
205015793 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
205015833 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
205015873 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
205015912 CCGGATAT
1 CCGGATAT
205015920 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:205015903 original size:80 final size:79
Alignment explanation
Indices: 205015753--205015919 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
205015743 CGGAATATAA
* *
205015753 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
205015818 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
205015833 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
205015895 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
205015912 CCGGATAT
1 CCGGATAT
205015920 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:205016765 original size:17 final size:19
Alignment explanation
Indices: 205016742--205016787 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
205016732 AAGAAGCATG
205016742 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
205016760 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
205016778 AATCATGCTC
1 AATCATGCTC
205016788 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:205020596 original size:38 final size:38
Alignment explanation
Indices: 205020553--205020647 Score: 181
Period size: 38 Copynumber: 2.5 Consensus size: 38
205020543 GGGTCGTAGC
205020553 CCTTTTCATATTTCATATTTCATAATACTGGGCCGAAG
1 CCTTTTCATATTTCATATTTCATAATACTGGGCCGAAG
*
205020591 CCTTTTCATGTTTCATATTTCATAATACTGGGCCGAAG
1 CCTTTTCATATTTCATATTTCATAATACTGGGCCGAAG
205020629 CCTTTTCATATTTCATATT
1 CCTTTTCATATTTCATATT
205020648 ACTGGGCCGA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (38 bp):
CCTTTTCATATTTCATATTTCATAATACTGGGCCGAAG
Found at i:205020605 original size:31 final size:31
Alignment explanation
Indices: 205020563--205020664 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
205020553 CCTTTTCATA
205020563 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
205020600 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
205020632 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
205020663 TT
1 TT
205020665 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
31 32 0.51
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.44
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:205020902 original size:24 final size:24
Alignment explanation
Indices: 205020856--205020974 Score: 136
Period size: 24 Copynumber: 5.0 Consensus size: 24
205020846 GCTTTATCAT
*
205020856 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
205020881 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
205020905 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
* **
205020928 ATAACTGAGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
*
205020952 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
205020975 TCACTTCCTC
Statistics
Matches: 82, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
23 23 0.28
24 46 0.56
25 13 0.16
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:205020945 original size:47 final size:48
Alignment explanation
Indices: 205020856--205020974 Score: 154
Period size: 47 Copynumber: 2.5 Consensus size: 48
205020846 GCTTTATCAT
* *
205020856 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGAGGCCAAAGCCCTTTCA
*
205020905 ATAACTGGGGCATAAGCCCTTTT-ATAACTGAGG-CATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGAGGCCA-AAGCCCTTTCA
*
205020952 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
205020975 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
46 2 0.03
47 41 0.64
48 9 0.14
49 12 0.19
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGAGGCCAAAGCCCTTTCA
Found at i:205021050 original size:20 final size:20
Alignment explanation
Indices: 205021025--205021084 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
205021015 TATGATTACC
205021025 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
205021045 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
205021065 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
205021085 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:205021159 original size:25 final size:25
Alignment explanation
Indices: 205021127--205021174 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
205021117 ATACATAAAC
* * *
205021127 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
205021152 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
205021175 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:205023607 original size:40 final size:40
Alignment explanation
Indices: 205023552--205023693 Score: 241
Period size: 40 Copynumber: 3.6 Consensus size: 40
205023542 TATTCGAATG
205023552 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
205023592 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
205023632 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
205023672 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
205023694 TACTTGGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 14 0.14
40 83 0.86
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:205031598 original size:39 final size:40
Alignment explanation
Indices: 205031525--205031665 Score: 225
Period size: 39 Copynumber: 3.6 Consensus size: 40
205031515 TATTCGAATG
205031525 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
205031565 ATATCCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
205031604 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
205031644 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
205031666 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
39 52 0.55
40 41 0.43
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:205036154 original size:27 final size:27
Alignment explanation
Indices: 205036107--205036159 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
205036097 AGGTAAGTTC
205036107 ATATTAGGATTACTATCTTTATTAATG
1 ATATTAGGATTACTATCTTTATTAATG
* * *
205036134 ATATTAGGGTTATTATTTTTATTAAT
1 ATATTAGGATTACTATCTTTATTAAT
205036160 TATTTTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (27 bp):
ATATTAGGATTACTATCTTTATTAATG
Found at i:205038499 original size:22 final size:22
Alignment explanation
Indices: 205038474--205038517 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
205038464 TTATCGATTC
*
205038474 AGCTCTAA-AGAGATTACTGTTT
1 AGCTC-AATAGAGATTACCGTTT
*
205038496 AGCTCAATAGAGTTTACCGTTT
1 AGCTCAATAGAGATTACCGTTT
205038518 TCGGCTCAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (22 bp):
AGCTCAATAGAGATTACCGTTT
Found at i:205038530 original size:24 final size:25
Alignment explanation
Indices: 205038496--205038564 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 25
205038486 ATTACTGTTT
*
205038496 AGCTCAATAGAGTTTACCGTTT-TC
1 AGCTCAATAGAGCTTACCGTTTATC
* * *
205038520 GGCTCAGTAGAGCTTACTGTTTATC
1 AGCTCAATAGAGCTTACCGTTTATC
*
205038545 AGCTCAAGAGGAGCTTACCG
1 AGCTCAATA-GAGCTTACCG
205038565 ATCATGAGAC
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
24 18 0.51
25 8 0.23
26 9 0.26
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (25 bp):
AGCTCAATAGAGCTTACCGTTTATC
Found at i:205038748 original size:22 final size:24
Alignment explanation
Indices: 205038704--205038749 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
205038694 ATAATAAGAG
*
205038704 TATATGTATAAGTGATATTAATTT
1 TATATGTATAAGTGATATGAATTT
*
205038728 TATATGTATGA-T-ATATGAATTT
1 TATATGTATAAGTGATATGAATTT
205038750 GGAATATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 1 0.05
24 10 0.50
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (24 bp):
TATATGTATAAGTGATATGAATTT
Found at i:205039631 original size:42 final size:42
Alignment explanation
Indices: 205039566--205039645 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
205039556 TACAGGTTTG
** * *
205039566 ACACGGCTTATACACACGGGCGTGTCTATTGGCCGTGTGTGTC
1 ACACGGCTTATACACACAAGCGTGT-GATTGACCGTGTGTGTC
*
205039609 ACACGGGTT-TACACACAAGCGTGTGATTGACCGTGTG
1 ACACGGCTTATACACACAAGCGTGTGATTGACCGTGTG
205039646 ACATAAGTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
41 11 0.34
42 13 0.41
43 8 0.25
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (42 bp):
ACACGGCTTATACACACAAGCGTGTGATTGACCGTGTGTGTC
Found at i:205045687 original size:28 final size:28
Alignment explanation
Indices: 205045647--205045714 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 28
205045637 ATATAGTGAA
*
205045647 TCGCACACTTAGTGCTA-ATACATTC-AGC
1 TCGCACACTTAGTGCTATATA-A-TCAAAC
205045675 TCGCACACTTAGTGCTATATAATCAAAC
1 TCGCACACTTAGTGCTATATAATCAAAC
205045703 TCGCACACTTAG
1 TCGCACACTTAG
205045715 CTGTACAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
27 2 0.05
28 32 0.86
29 3 0.08
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATATAATCAAAC
Found at i:205047434 original size:29 final size:29
Alignment explanation
Indices: 205047305--205047434 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
205047295 CCCTCGAGCT
** * * *
205047305 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
205047334 CGCACAC--AGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
205047361 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
205047390 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
205047419 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
205047435 ATCTCGTCAC
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
27 25 0.27
29 68 0.73
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:205048259 original size:142 final size:141
Alignment explanation
Indices: 205048070--205048363 Score: 554
Period size: 142 Copynumber: 2.1 Consensus size: 141
205048060 AAATTCTATA
205048070 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
*
205048135 TGTTAAACATTCGAACTTACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
205048200 G-AAACAACAT
131 GAAAACAACAT
205048210 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
205048275 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
205048340 AGGAAAACAACAT
129 AGGAAAACAACAT
205048353 GCATGGCCGAA
1 GCATGGCCGAA
205048364 ATTTAACTCA
Statistics
Matches: 150, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
140 19 0.13
142 111 0.74
143 20 0.13
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.22
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:205056786 original size:40 final size:39
Alignment explanation
Indices: 205056621--205056804 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
205056611 AAATTGAATG
* * *
205056621 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
205056661 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
205056701 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
205056741 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
205056780 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
205056805 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:205056829 original size:80 final size:81
Alignment explanation
Indices: 205056661--205056849 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
205056651 GCTGGAAATT
* * * *
205056661 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
205056726 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
205056742 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
205056805 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
205056821 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
205056850 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:205064902 original size:40 final size:39
Alignment explanation
Indices: 205064737--205064920 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
205064727 AAATTGAATG
* * *
205064737 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
205064777 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
205064817 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
205064857 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
205064896 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
205064921 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:205064945 original size:80 final size:81
Alignment explanation
Indices: 205064777--205064965 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
205064767 GCTGGAAATT
* * * *
205064777 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
205064842 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
205064858 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
205064921 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
205064937 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
205064966 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:205074253 original size:28 final size:28
Alignment explanation
Indices: 205074184--205074284 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
205074174 GACAAGATTG
* * * *
205074184 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
205074214 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
205074242 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
205074271 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
205074285 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:205082202 original size:28 final size:28
Alignment explanation
Indices: 205082133--205082233 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
205082123 GACAAGATTG
* * * *
205082133 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
205082163 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
205082191 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
205082220 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
205082234 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:205084104 original size:31 final size:31
Alignment explanation
Indices: 205084063--205084126 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
205084053 CCTTTTCATA
* *
205084063 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
**
205084094 TTTCAAATTTCATATTACTGGGCCAAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
205084125 TT
1 TT
205084127 ACGGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCAAAGCCT
Found at i:205084369 original size:24 final size:24
Alignment explanation
Indices: 205084331--205084482 Score: 227
Period size: 24 Copynumber: 6.4 Consensus size: 24
205084321 TAACTGGCCT
* *
205084331 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTGATAACTGGGGCATA
*
205084356 AGCCCTTTTTATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
*
205084380 AGCCC-TTTGATAACTGGGGCGTA
1 AGCCCTTTTGATAACTGGGGCATA
205084403 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
205084427 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
* *
205084451 AGCCC-TTTAATAATTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
205084474 AGCCCTTTT
1 AGCCCTTTT
205084483 TCACTTCCTC
Statistics
Matches: 118, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
23 42 0.36
24 72 0.61
25 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTGATAACTGGGGCATA
Found at i:205084397 original size:47 final size:47
Alignment explanation
Indices: 205084342--205084481 Score: 219
Period size: 47 Copynumber: 3.0 Consensus size: 47
205084332 GCCTCTTTTA
* *
205084342 ATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTG
* *
205084389 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTG
*
205084437 ATAACTGGGGCATAAGCCC-TTTAATAATTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
205084482 TTCACTTCCT
Statistics
Matches: 86, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
46 3 0.03
47 61 0.71
48 22 0.26
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTG
Found at i:205084418 original size:71 final size:71
Alignment explanation
Indices: 205084331--205084482 Score: 241
Period size: 71 Copynumber: 2.1 Consensus size: 71
205084321 TAACTGGCCT
* *
205084331 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTGATAACTG
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTG
*
205084396 GGGCGTA
65 GGGCATA
* * *
205084403 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAATTGG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
205084468 GGCATA
66 GGCATA
205084474 AGCCCTTTT
1 AGCCCTTTT
205084483 TCACTTCCTC
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 70 0.95
72 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:205084555 original size:9 final size:9
Alignment explanation
Indices: 205084541--205084617 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
205084531 ATCTCGTGTG
205084541 CATATCATA
1 CATATCATA
*
205084550 CATATCATGTG
1 CATATCA--TA
205084561 CATATCATA
1 CATATCATA
* *
205084570 CATGTCATGTG
1 CATATCA--TA
205084581 CATATCATA
1 CATATCATA
*
205084590 CATATCATGTG
1 CATATCA--TA
205084601 CATATCATA
1 CATATCATA
205084610 CATATCAT
1 CATATCAT
205084618 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:205084560 original size:20 final size:20
Alignment explanation
Indices: 205084537--205084619 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
205084527 GAACATCTCG
205084537 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
205084557 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
205084577 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
205084597 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
205084617 TGT
1 TGT
205084620 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:205084566 original size:11 final size:11
Alignment explanation
Indices: 205084537--205084608 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
205084527 GAACATCTCG
205084537 TGTGCATATCA
1 TGTGCATATCA
*
205084548 --TACATATCA
1 TGTGCATATCA
205084557 TGTGCATATCA
1 TGTGCATATCA
* *
205084568 --TACATGTCA
1 TGTGCATATCA
205084577 TGTGCATATCA
1 TGTGCATATCA
*
205084588 --TACATATCA
1 TGTGCATATCA
205084597 TGTGCATATCA
1 TGTGCATATCA
205084608 T
1 T
205084609 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:205085966 original size:27 final size:27
Alignment explanation
Indices: 205085945--205086263 Score: 361
Period size: 27 Copynumber: 11.8 Consensus size: 27
205085935 TGGTATTTTA
* *
205085945 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACG
* * *
205085972 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAACG
* * *
205085999 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAACG
* *
205086026 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* *
205086053 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
*
205086080 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* * **
205086107 GTAATTCTATAAATCGAGGGCAAAATA
1 GTAATTTTATAAATCGAGGGTAAAACG
* *
205086134 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTTTATAAATC-GAGGGTAAAACG
* *
205086161 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
*
205086188 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAACG
* ****
205086215 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAACG
* *
205086242 GTAATTTTACAAGTCGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
205086264 TTTCAATAAT
Statistics
Matches: 256, Mismatches: 34, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 254 0.99
28 1 0.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAACG
Found at i:205086002 original size:54 final size:54
Alignment explanation
Indices: 205085945--205086236 Score: 406
Period size: 54 Copynumber: 5.4 Consensus size: 54
205085935 TGGTATTTTA
* * * * *
205085945 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
* * *
205085999 GTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
* **
205086053 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
* ** *
205086107 GTAATTCTATAAATCGAGGGCAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATC-GAGGGTAAAACG
* **
205086161 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
205086215 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
205086237 CTTTGGTAAT
Statistics
Matches: 207, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 1 0.00
54 205 0.99
55 1 0.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACG
Found at i:205086067 original size:108 final size:108
Alignment explanation
Indices: 205085945--205086236 Score: 487
Period size: 108 Copynumber: 2.7 Consensus size: 108
205085935 TGGTATTTTA
* * ** * *
205085945 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
* *
205086010 AATTGAGGGTAAAATGGTAATTCTGTAAA-TCGAGGGTAAAACG
66 AATCGAGGGTAAAATAGTAATTCTGTAAACT-GAGGGTAAAACG
205086053 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
*
205086118 AATCGAGGGCAAAATAGTAATTCTGTAAACTGAGGGTAAAACG
66 AATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACG
205086161 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
205086226 AATCGAGGGTA
66 AATCGAGGGTA
205086237 CTTTGGTAAT
Statistics
Matches: 173, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
108 172 0.99
109 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (108 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACG
Found at i:205086247 original size:81 final size:81
Alignment explanation
Indices: 205085945--205086236 Score: 406
Period size: 81 Copynumber: 3.6 Consensus size: 81
205085935 TGGTATTTTA
* * * * *
205085945 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
* *
205086010 AATTGAGGGTAAAATG
66 AATCGAGGGTAAAACG
* * * *
205086026 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
205086091 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * *
205086107 GTAATTCTATAAATCGAGGGCAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGT
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTAT
205086171 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAACG
* * * *
205086188 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
205086237 CTTTGGTAAT
Statistics
Matches: 187, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 185 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:205086273 original size:27 final size:27
Alignment explanation
Indices: 205086243--205086307 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
205086233 GGTACTTTGG
205086243 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
205086270 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
205086297 TAATTTCACAA
1 TAATTTTACAA
205086308 ATTAGGGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:205086300 original size:81 final size:79
Alignment explanation
Indices: 205086189--205086410 Score: 207
Period size: 81 Copynumber: 2.7 Consensus size: 79
205086179 GGTAAAACGG
*** * * *
205086189 TAATTTTACAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACA
1 TAATTTTACAAA-CGAGGGGTATTTCAGTAATT-TACAAATC-AGGGTATTTTGGTAATTTTACA
*
205086253 AGTCGA-GGGTATTTCAA
63 A-ACGAGGGGTATTTCAA
** *
205086270 TAATTTTACAGGTCGA-GGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACA
1 TAATTTTACA-AACGAGGGGTATTTCAGTAATTT-ACAAATCA-GGGTATTTTGGTAATTTTACA
* **
205086334 AACTAGGGGTATTTTGA
63 AACGAGGGGTATTTCAA
* * *
205086351 TAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAAGCAGGGTATTTTGGTAATTTT
1 TAATTTTACAAACGAGGGGTATTTCAGTAA-TTTACAAATCAGGGTATTTTGGTAATTTT
205086411 GTAAACCAAA
Statistics
Matches: 116, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
80 24 0.21
81 89 0.77
82 3 0.03
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (79 bp):
TAATTTTACAAACGAGGGGTATTTCAGTAATTTACAAATCAGGGTATTTTGGTAATTTTACAAAC
GAGGGGTATTTCAA
Found at i:205086316 original size:27 final size:27
Alignment explanation
Indices: 205086286--205086410 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
205086276 TACAGGTCGA
* * *
205086286 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTAGTAATTTTACAAACTAG
*
205086313 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTTACAAACTAG
205086340 GGGTATTTT-GATAATTTTACAAACTAG
1 GGGTATTTTAG-TAATTTTACAAACTAG
205086367 GGGTATTTTAGTAATTTTACAAAGC-A-
1 GGGTATTTTAGTAATTTTACAAA-CTAG
*
205086393 GGGTATTTTGGTAATTTT
1 GGGTATTTTAGTAATTTT
205086411 GTAAACCAAA
Statistics
Matches: 90, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
26 18 0.20
27 70 0.78
28 2 0.02
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAACTAG
Found at i:205086317 original size:54 final size:54
Alignment explanation
Indices: 205086259--205086389 Score: 149
Period size: 54 Copynumber: 2.4 Consensus size: 54
205086249 TACAAGTCGA
* * ** *
205086259 GGGTATTTCAATAATTTTACAGGTCGA-GGGTATTTCAG-TAATTTCACAAATTAG
1 GGGTATTTTAGTAATTTTACA-AACGAGGGGTATTT-AGATAATTTCACAAACTAG
* * * *
205086313 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTTACAAACGAGGGGTATTTAGATAATTTCACAAACTAG
205086367 GGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTAGTAATTTTACAAA
205086390 GCAGGGTATT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
53 3 0.05
54 62 0.95
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACGAGGGGTATTTAGATAATTTCACAAACTAG
Found at i:205087662 original size:16 final size:16
Alignment explanation
Indices: 205087641--205087671 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
205087631 CAAACTTCTG
205087641 GCTTTTCAGCATTTCA
1 GCTTTTCAGCATTTCA
*
205087657 GCTTTTCCGCATTTC
1 GCTTTTCAGCATTTC
205087672 TGGATTTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.29, G:0.13, T:0.45
Consensus pattern (16 bp):
GCTTTTCAGCATTTCA
Found at i:205091919 original size:24 final size:24
Alignment explanation
Indices: 205091869--205091922 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
205091859 AATCGAATTT
*
205091869 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
205091893 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
205091917 GCACAC
1 GCACAC
205091923 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:205095642 original size:70 final size:71
Alignment explanation
Indices: 205095559--205095721 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
205095549 CGATTTGTCT
205095559 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
205095623 CTTTCA
66 CTTTCA
*
205095629 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
205095694 CTTTCA
66 CTTTCA
205095700 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
205095722 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:205095759 original size:71 final size:70
Alignment explanation
Indices: 205095559--205095755 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
205095549 CGATTTGTCT
* * * *
205095559 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
205095623 CTTTCA
65 CTTTCA
* * * *
205095629 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
205095694 CTTTCA
65 CTTTCA
* *
205095700 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
205095756 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:205105722 original size:40 final size:40
Alignment explanation
Indices: 205105638--205105822 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 40
205105628 CCGAATGATG
* *
205105638 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
205105677 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
205105718 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
205105758 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
205105796 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
205105823 AATGAGTAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
38 2 0.02
39 31 0.24
40 84 0.66
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:205105777 original size:79 final size:81
Alignment explanation
Indices: 205105638--205105820 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
205105628 CCGAATGATG
* *
205105638 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
205105702 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
205105717 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATTCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
205105779 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
205105797 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
205105821 TGAATGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:205112802 original size:12 final size:12
Alignment explanation
Indices: 205112787--205112844 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
205112777 GAGCGATTGA
*
205112787 AGGAGGGATTTG
1 AGGAGAGATTTG
*
205112799 AGGAGAGATATG
1 AGGAGAGATTTG
* *
205112811 AGGAGCGATTTT
1 AGGAGAGATTTG
* *
205112823 AGGAGAAAATTG
1 AGGAGAGATTTG
205112835 TAGGAGAGAT
1 -AGGAGAGAT
205112845 GAAGGGAAGA
Statistics
Matches: 34, Mismatches: 11, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
12 27 0.79
13 7 0.21
ACGTcount: A:0.36, C:0.02, G:0.40, T:0.22
Consensus pattern (12 bp):
AGGAGAGATTTG
Found at i:205114259 original size:26 final size:27
Alignment explanation
Indices: 205114200--205114315 Score: 130
Period size: 27 Copynumber: 4.3 Consensus size: 27
205114190 CCTTATTTGA
* *
205114200 TAAAATGA-TAGAAATGCCCTTATAGGG
1 TAAAATGACT-GAAATACCCCTATAGGG
205114227 TAAAATGACTGAAATACCCC-ATAGGG
1 TAAAATGACTGAAATACCCCTATAGGG
* *
205114253 TAGAATGACCGAAATACCCCTATAGGG
1 TAAAATGACTGAAATACCCCTATAGGG
* * *
205114280 TAAAATGACT-ATAATACCCCGATAAGA
1 TAAAATGACTGA-AATACCCCTATAGGG
205114307 TAAAATGAC
1 TAAAATGAC
205114316 AGATTTGTTC
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
26 25 0.32
27 51 0.66
28 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.18, T:0.22
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCCTATAGGG
Found at i:205116570 original size:46 final size:46
Alignment explanation
Indices: 205116518--205116690 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
205116508 TTGGGCATCC
205116518 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
* *
205116564 GAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA--A-G--TCT
* * * * * *
205116611 GAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
* *
205116657 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
205116691 GTGGGTTACA
Statistics
Matches: 103, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 6 0.06
43 4 0.04
44 1 0.01
45 2 0.02
46 55 0.53
47 23 0.22
48 2 0.02
50 4 0.04
51 6 0.06
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCT
Done.