Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 653 of 770
Found at i:205116670 original size:93 final size:93
Alignment explanation
Indices: 205116511--205116681 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
205116501 CGGATATTTG
* * *
205116511 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGTCTGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAG
205116576 TTGAGTCCGAGTTTGTGAGATGTAACTA
66 TTGAGTCCGAGTTTGTGAGATGTAACTA
* * * * *
205116604 GGCATCTGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAG
205116669 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
205116682 CGCTTATGGG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAG
TTGAGTCCGAGTTTGTGAGATGTAACTA
Found at i:205118021 original size:40 final size:40
Alignment explanation
Indices: 205117976--205118142 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
205117966 CGGAATATAA
*
205117976 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
205118016 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
205118056 CCGGATATAGCCACTAGCACAACTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
205118096 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
205118135 CCGGATAT
1 CCGGATAT
205118143 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:205121051 original size:46 final size:46
Alignment explanation
Indices: 205120955--205121125 Score: 140
Period size: 46 Copynumber: 3.7 Consensus size: 46
205120945 GGGGTAAGGT
* * ** *
205120955 GCCGATGCTATGTCCTAGACATGGTCTTACACTGACACATTTC-ATG
1 GCCGATGC-ATGTCCCAGACATGGTCTTACACTGGCTTATGTCAATG
205121001 GCCGATGCATGTCCCAGACAT-GTCTTACACTAGTGCTTATGTCAAT-
1 GCCGATGCATGTCCCAGACATGGTCTTACACT-G-GCTTATGTCAATG
* *
205121047 GCCGATGCCATGTCCTTA-ACATGGTCTTACACTGGCTCT-CGT-AATGTG
1 GCCGATG-CATGTCC-CAGACATGGTCTTACACTGGCT-TATGTCAA--TG
* *
205121095 GCCGATGCATGTCCCAAACAT-TTCTTACACT
1 GCCGATGCATGTCCCAGACATGGTCTTACACT
205121126 AGCTCACACA
Statistics
Matches: 105, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
44 10 0.10
45 15 0.14
46 35 0.33
47 27 0.26
48 18 0.17
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTATGTCAATG
Found at i:205124647 original size:30 final size:30
Alignment explanation
Indices: 205124592--205124722 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
205124582 ATAGTGAATC
*
205124592 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
205124621 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
205124651 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
205124679 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
205124709 CGCACACTTAGTGC
1 CGCACACTTAGTGC
205124723 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:205124702 original size:58 final size:58
Alignment explanation
Indices: 205124591--205124722 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
205124581 TATAGTGAAT
* * * * *
205124591 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
205124650 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
205124708 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
205124723 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:205132591 original size:30 final size:30
Alignment explanation
Indices: 205132536--205132666 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
205132526 ATAGTGAATC
*
205132536 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
205132565 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
205132595 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
205132623 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
205132653 CGCACACTTAGTGC
1 CGCACACTTAGTGC
205132667 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:205132646 original size:58 final size:58
Alignment explanation
Indices: 205132535--205132666 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
205132525 TATAGTGAAT
* * * * *
205132535 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
205132594 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
205132652 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
205132667 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:205136921 original size:29 final size:29
Alignment explanation
Indices: 205136882--205136960 Score: 113
Period size: 29 Copynumber: 2.7 Consensus size: 29
205136872 CATACCCTCG
** *
205136882 AGCTCGCACACCCAGTGCCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
205136911 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
205136940 AGCACGCACACTTAGTGCCAT
1 AGCTCGCACACTTAGTGCCAT
205136961 CTCGTCACCG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:205139870 original size:43 final size:43
Alignment explanation
Indices: 205139713--205139871 Score: 216
Period size: 43 Copynumber: 3.7 Consensus size: 43
205139703 TATGTGTTCT
* *
205139713 CATGTAAGACCACGTCTGGGACGTTGGCATTGACT-TATGATTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTA
* *
205139757 CATGTAAGACCACGTCTGGGACATTGGCATC-ATATTTGATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
* *
205139799 CATGTAAGACCATGTCTGGGACAG-TGGCACCGATATTTGATTA
1 CATGTAAGACCACGTCTGGGAC-GTTGGCATCGATATTTGATTA
205139842 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
205139872 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
42 31 0.31
43 41 0.41
44 29 0.29
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:205139871 original size:85 final size:86
Alignment explanation
Indices: 205139712--205139871 Score: 236
Period size: 85 Copynumber: 1.9 Consensus size: 86
205139702 ATATGTGTTC
**
205139712 TCATGTAAGACCACGTCTGGGACGTTGGCATTGACTTATGATTTACATGTAAGACCACGTCTGGG
1 TCATGTAAGACCACGTCTGGGACGTTGGCACCGACTTATGATTTACATGTAAGACCACGTCTGGG
205139777 ACATTGGCATCATATTTGATT
66 ACATTGGCATCATATTTGATT
* *
205139798 TCATGTAAGACCATGTCTGGGACAG-TGGCACCGA-TATTTGA-TTACATGTAAGACCACGTCTG
1 TCATGTAAGACCACGTCTGGGAC-GTTGGCACCGACT-TATGATTTACATGTAAGACCACGTCTG
*
205139860 GGACGTTGGCAT
64 GGACATTGGCAT
205139872 TGTACGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
85 33 0.49
86 33 0.49
87 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (86 bp):
TCATGTAAGACCACGTCTGGGACGTTGGCACCGACTTATGATTTACATGTAAGACCACGTCTGGG
ACATTGGCATCATATTTGATT
Found at i:205142358 original size:24 final size:24
Alignment explanation
Indices: 205142326--205142422 Score: 185
Period size: 24 Copynumber: 4.0 Consensus size: 24
205142316 GGGTAGAAAG
205142326 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
205142350 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
205142374 TTTACTATGGCACTGTGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
*
205142398 TTTACTATGGCACTATGTGTGCGA
1 TTTACTATGGCACTGTGTGTGCGA
205142422 T
1 T
205142423 CATAATAAGC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.18, C:0.16, G:0.28, T:0.38
Consensus pattern (24 bp):
TTTACTATGGCACTGTGTGTGCGA
Found at i:205142435 original size:48 final size:48
Alignment explanation
Indices: 205142335--205142443 Score: 157
Period size: 48 Copynumber: 2.3 Consensus size: 48
205142325 GTTTACTATG
* * * *
205142335 GCACTGTGTGTGCGATTTACTATGGCACTGTGTGTGCGATTTACTATG
1 GCACTGTGTGTGCGATTTACTATGGCACTATGTGTGCGATATAATATA
205142383 GCACTGTGTGTGCGATTTACTATGGCACTATGTGTGCGATCATAATA-A
1 GCACTGTGTGTGCGATTTACTATGGCACTATGTGTGCGAT-ATAATATA
*
205142431 GCACTATGTGTGC
1 GCACTGTGTGTGC
205142444 CACATTCGGT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 51 0.93
49 4 0.07
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (48 bp):
GCACTGTGTGTGCGATTTACTATGGCACTATGTGTGCGATATAATATA
Found at i:205151992 original size:17 final size:18
Alignment explanation
Indices: 205151950--205151998 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
205151940 AGTTGAAAAG
205151950 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
205151969 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
205151986 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
205151999 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:205152887 original size:40 final size:40
Alignment explanation
Indices: 205152821--205152987 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
205152811 AAATTGAATG
* * *
205152821 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
205152860 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
205152900 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
205152940 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
205152980 ATATCCGG
1 ATATCCGG
205152988 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:205159993 original size:17 final size:18
Alignment explanation
Indices: 205159951--205159999 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
205159941 AGTTGAAAAG
205159951 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
205159970 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
205159987 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
205160000 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:205160887 original size:40 final size:40
Alignment explanation
Indices: 205160821--205160987 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
205160811 AAATTGAATG
* * *
205160821 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
205160860 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
205160900 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
205160940 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
205160980 ATATCCGG
1 ATATCCGG
205160988 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:205167375 original size:40 final size:40
Alignment explanation
Indices: 205167309--205167459 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
205167299 AAATTGAATG
* * *
205167309 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
205167348 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
205167388 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
205167428 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
205167460 ACGTGTTATA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:205175391 original size:40 final size:40
Alignment explanation
Indices: 205175324--205175475 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
205175314 AAATTGAATG
* * * *
205175324 ATATCCGGGCTAAGCCCCAAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
205175364 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
**
205175404 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
205175444 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
205175476 ACATGCTTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 86 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:205175489 original size:40 final size:39
Alignment explanation
Indices: 205175362--205175491 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
205175352 ATGCTGGAAA
* * *
205175362 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
205175403 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
205175441 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
205175482 TTATATCCGG
1 TTATATCCGG
205175492 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:205177249 original size:27 final size:27
Alignment explanation
Indices: 205177220--205177721 Score: 673
Period size: 27 Copynumber: 18.6 Consensus size: 27
205177210 GGGCAAAATG
* * * * *
205177220 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
205177247 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
205177274 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
205177301 GTATTTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
205177328 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
205177355 GTATTTCTACCTTACAAGGGTATTT-T
1 GTAATTCTACCCTACAGGGGTATTTCA
*
205177381 GATAATTCTACCCTACAGGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCA
205177409 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
205177436 GTAATTCCACCCTATAGGGGTGTTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
205177463 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
205177490 GTAATTCTACTCTACAGGGTTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
205177517 GTATTTCTATCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
205177544 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
205177571 ATAATTTTATCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
205177598 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
205177625 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
205177652 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
205177679 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
205177706 GTAATACTAGCCTACA
1 GTAATTCTACCCTACA
205177722 AATATGAGAT
Statistics
Matches: 419, Mismatches: 54, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 417 1.00
28 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:205182655 original size:47 final size:45
Alignment explanation
Indices: 205182589--205182709 Score: 125
Period size: 47 Copynumber: 2.6 Consensus size: 45
205182579 TGTGTGCTAT
* * * *
205182589 TGTAAGACATGTCTAGGACATGCATCGCCCACATTATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGCACACA-GACGAGAGCCAG
* * ***
205182635 TGTAAGACCATGTATGGGACATGGCATTAGCATTGAGACGAGAGCCAG
1 TGTAAGA-CATGTCTGGGACAT-GCA-TCGCACACAGACGAGAGCCAG
205182683 TGTAAGACATGTCTGGGACATGCATCG
1 TGTAAGACATGTCTGGGACATGCATCG
205182710 GCTACGAGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
45 2 0.03
46 10 0.16
47 25 0.41
48 20 0.33
49 4 0.07
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCGCACACAGACGAGAGCCAG
Found at i:205184521 original size:20 final size:21
Alignment explanation
Indices: 205184482--205184521 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
205184472 TTTATAATGA
205184482 CCACACGGGCATGTTGCCCTT
1 CCACACGGGCATGTTGCCCTT
205184503 CCACACGGGCATG-TGCCCT
1 CCACACGGGCATGTTGCCCT
205184522 GTTTCAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACGGGCATGTTGCCCTT
Found at i:205184943 original size:19 final size:19
Alignment explanation
Indices: 205184912--205184953 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
205184902 ATGTTGGCAA
205184912 GTTTCGAAAACTTATATAT
1 GTTTCGAAAACTTATATAT
*
205184931 GTTT-GAAAGACTTGTATAT
1 GTTTCGAAA-ACTTATATAT
205184950 GTTT
1 GTTT
205184954 ATGTACTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.45
Consensus pattern (19 bp):
GTTTCGAAAACTTATATAT
Found at i:205186042 original size:55 final size:55
Alignment explanation
Indices: 205185958--205186068 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
205185948 TAACTGTGAC
205185958 AGCCCAAAATTGACCCTAGACGGGATGTGGTTTCGGGACCACAAAACCGAGGCAT
1 AGCCCAAAATTGACCCTAGACGGGATGTGGTTTCGGGACCACAAAACCGAGGCAT
205186013 AGCCCAAAATTGACCCTAGACGGGATGTGGTTTCGGGACCACAAAACCGAGGCAT
1 AGCCCAAAATTGACCCTAGACGGGATGTGGTTTCGGGACCACAAAACCGAGGCAT
205186068 A
1 A
205186069 AAAATAATTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.32, C:0.25, G:0.27, T:0.16
Consensus pattern (55 bp):
AGCCCAAAATTGACCCTAGACGGGATGTGGTTTCGGGACCACAAAACCGAGGCAT
Found at i:205187624 original size:29 final size:29
Alignment explanation
Indices: 205187591--205187720 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
205187581 TGATGAGATC
*
205187591 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
205187620 GGCACTAAGTGTGCGTGCTGGAAATATA-
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
205187648 AGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
205187677 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
205187706 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
205187721 AGCTCGGAGG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 25 0.28
29 63 0.72
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:205187661 original size:57 final size:57
Alignment explanation
Indices: 205187592--205187700 Score: 164
Period size: 57 Copynumber: 1.9 Consensus size: 57
205187582 GATGAGATCG
* * * **
205187592 GCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAA
1 GCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAATATAA
*
205187649 GCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAGCTGGAAA
1 GCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAA
205187701 AATACGGCAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (57 bp):
GCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAATATAA
Found at i:205195577 original size:29 final size:29
Alignment explanation
Indices: 205195544--205195673 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
205195534 TGACGAGATC
205195544 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
*
205195573 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
*
205195602 GGCACTAAGTGTGCATGCTGGAAA-ATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
* * ** * *
205195630 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
205195659 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
205195674 AGCTCGGAGG
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 24 0.27
29 65 0.73
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:205195672 original size:57 final size:58
Alignment explanation
Indices: 205195543--205195664 Score: 174
Period size: 57 Copynumber: 2.1 Consensus size: 58
205195533 GTGACGAGAT
* * ** *
205195543 CGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCATGCTGGAAATATATGACACTAAGTGTGCAAGCTGGAAAAATA
* *
205195601 AGGCACTAAGTGTGCATGCTGGAAA-ATATGACACTATGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCATGCTGGAAATATATGACACTAAGTGTGCAAGCTGGAAAAATA
205195658 CGGCACT
1 CGGCACT
205195665 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 33 0.59
58 23 0.41
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (58 bp):
CGGCACTAAGTGTGCATGCTGGAAATATATGACACTAAGTGTGCAAGCTGGAAAAATA
Found at i:205199650 original size:40 final size:40
Alignment explanation
Indices: 205199591--205199798 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
205199581 CAATTGAATG
* * * *
205199591 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
205199631 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
205199671 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
205199711 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
205199751 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
205199791 ATATCCGG
1 ATATCCGG
205199799 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:205199729 original size:80 final size:80
Alignment explanation
Indices: 205199593--205199798 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
205199583 ATTGAATGAT
* * ** * * *
205199593 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
205199657 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
205199673 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
205199738 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
205199753 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
205199799 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:205207700 original size:40 final size:40
Alignment explanation
Indices: 205207641--205207848 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
205207631 CAATTGAATG
* * * *
205207641 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
205207681 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
205207721 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
205207761 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
205207801 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
205207841 ATATCCGG
1 ATATCCGG
205207849 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:205207779 original size:80 final size:80
Alignment explanation
Indices: 205207643--205207848 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
205207633 ATTGAATGAT
* * ** * * *
205207643 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
205207707 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
205207723 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
205207788 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
205207803 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
205207849 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:205212892 original size:49 final size:47
Alignment explanation
Indices: 205212792--205213010 Score: 212
Period size: 49 Copynumber: 4.6 Consensus size: 47
205212782 CGATGCCGAC
* * *
205212792 GCCATGTTCCAAACATGGCCTTACACT-AGCTCTCACATCTAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGA-CTCTCACATCTAAGTCGAT
* *
205212840 GCCATGTCCCAGACAAGTCTTACACTGACTCTCACTTATCTATGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCAC--ATCTAAGTCGAT
* * * * *
205212889 GCCATGTCCTAGACAGGTCTTACACT-A-ACACACCTC-AAGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCACATCTAAGTCGAT
* * * **
205212933 GCCATGTCCCAGATAGGTCTTACATTGGCTCTCACTTATCTGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCAC--ATCTAAGTCGAT
*
205212982 GCCGTGTCCCAGACAGGTCTTACACTGAC
1 GCCATGTCCCAGACAGGTCTTACACTGAC
205213011 ACACACATTG
Statistics
Matches: 137, Mismatches: 26, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
44 29 0.21
45 2 0.01
46 4 0.03
47 20 0.15
48 17 0.12
49 65 0.47
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTCTCACATCTAAGTCGAT
Found at i:205212940 original size:93 final size:93
Alignment explanation
Indices: 205212836--205213014 Score: 286
Period size: 93 Copynumber: 1.9 Consensus size: 93
205212826 ACATCTAAGT
*
205212836 CGATGCCATGTCCCAGACAAGTCTTACACTGACTCTCACTTATCTATGTCGATGCCATGTCCTAG
1 CGATGCCATGTCCCAGACAAGTCTTACACTGACTCTCACTTATCTATGTCGATGCCATGTCCCAG
205212901 ACAGGTCTTACACTAACACACCTCAAGC
66 ACAGGTCTTACACTAACACACCTCAAGC
* * * * * *
205212929 CGATGCCATGTCCCAGATAGGTCTTACATTGGCTCTCACTTATCTGTGTCGATGCCGTGTCCCAG
1 CGATGCCATGTCCCAGACAAGTCTTACACTGACTCTCACTTATCTATGTCGATGCCATGTCCCAG
*
205212994 ACAGGTCTTACACTGACACAC
66 ACAGGTCTTACACTAACACAC
205213015 ACATTGTAAC
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 78 1.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACAAGTCTTACACTGACTCTCACTTATCTATGTCGATGCCATGTCCCAG
ACAGGTCTTACACTAACACACCTCAAGC
Found at i:205213793 original size:40 final size:40
Alignment explanation
Indices: 205213723--205213900 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
205213713 AAGCCAAGTA
* * * *
205213723 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
205213762 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
205213802 CCTTCGGGACTTAGTCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
205213842 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
205213882 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
205213901 TTATCACCCA
Statistics
Matches: 123, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 13 0.11
40 110 0.89
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:205221128 original size:46 final size:46
Alignment explanation
Indices: 205220982--205221198 Score: 228
Period size: 46 Copynumber: 4.7 Consensus size: 46
205220972 TGTGTGAACT
* * * *
205220982 AGTGTAAGACATGTCTGGGACATGCATCGGCCAT-ATTATGTGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-GATGTAAGCC
* * * *
205221028 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGATGTA-AGCC
* *
205221076 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATGTAAGCC
* *
205221122 AGTGTAAGACATGTCTGGGACATGCATCAG-CTGTGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-TGAGATGTAAGCC
205221166 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
205221199 ACCTTACCCC
Statistics
Matches: 145, Mismatches: 17, Indels: 17
0.81 0.09 0.09
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 66 0.46
47 28 0.19
48 23 0.16
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATGTAAGCC
Found at i:205221737 original size:46 final size:46
Alignment explanation
Indices: 205221670--205221761 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
205221660 AAAAGTGTTG
205221670 GCTTGGGATAGATCCTACACTTGATATTAAGCCTTGAATGATGGCT
1 GCTTGGGATAGATCCTACACTTGATATTAAGCCTTGAATGATGGCT
*
205221716 GCTTGGGATAGATTCCT-CACTTGGTATTAAGCCTTGAATGATGGCT
1 GCTTGGGATAGA-TCCTACACTTGATATTAAGCCTTGAATGATGGCT
205221762 AACATTCATT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 40 0.91
47 4 0.09
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (46 bp):
GCTTGGGATAGATCCTACACTTGATATTAAGCCTTGAATGATGGCT
Found at i:205223238 original size:39 final size:39
Alignment explanation
Indices: 205223190--205223376 Score: 182
Period size: 39 Copynumber: 4.8 Consensus size: 39
205223180 GCTACTAGTT
* * * ** *
205223190 CAAACGCCTTCGGGACATAGCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCGGATATCATAACTCGCA
* *
205223229 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTT-AGCCGGATATCATAACTCGCA
*
205223269 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCGGATATCATAACTCGCA
* * * * *
205223308 CAATTGCCTTCGGG-CTTAGCCCGGATGTCACAATTTGCA
1 CAAATGCCTTCGGGACTTAG-CCGGATATCATAACTCGCA
*
205223347 CAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 CAAATGCCTTCGGGACTTAG-CCGGATATCA
205223377 CTCGAACATT
Statistics
Matches: 130, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 101 0.78
40 28 0.22
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCGGATATCATAACTCGCA
Found at i:205223351 original size:78 final size:79
Alignment explanation
Indices: 205223220--205223376 Score: 253
Period size: 78 Copynumber: 2.0 Consensus size: 79
205223210 CCGGTTATGG
205223220 TAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCT
1 TAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCT
205223285 TAGCCCGGATATCA
66 TAGCCCGGATATCA
* * * * * *
205223299 TAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATGTCACAATTTGCACAATTGCCTTCGGGCT
1 TAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCT
205223363 TAGCCCGGATATCA
66 TAGCCCGGATATCA
205223377 CTCGAACATT
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
78 51 0.71
79 21 0.29
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (79 bp):
TAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCT
TAGCCCGGATATCA
Found at i:205233476 original size:38 final size:38
Alignment explanation
Indices: 205233434--205233508 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
205233424 TCACAAATTG
205233434 GCACTAAGTGTGCGGGTTCAAATTATACAGCACTAAGA
1 GCACTAAGTGTGCGGGTTCAAATTATACAGCACTAAGA
205233472 GCACTAAGTGTGCGGGTTCAAATTATACAGCACTAAG
1 GCACTAAGTGTGCGGGTTCAAATTATACAGCACTAAG
205233509 TGTGCAAGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (38 bp):
GCACTAAGTGTGCGGGTTCAAATTATACAGCACTAAGA
Found at i:205233533 original size:28 final size:28
Alignment explanation
Indices: 205233471--205233569 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
205233461 CAGCACTAAG
** * *
205233471 AGCACTAAGTGTGCGGGTTCAAATTATAC
1 AGCACTAAGTGTGCAAGTTC-GATTATAT
*
205233500 AGCACTAAGTGTGCAAGTTTGATTATAT
1 AGCACTAAGTGTGCAAGTTCGATTATAT
* *
205233528 AGCACTAAGTGTGCGAGTTCGACTAT-T
1 AGCACTAAGTGTGCAAGTTCGATTATAT
205233555 AAGCACTAAGTGTGC
1 -AGCACTAAGTGTGC
205233570 GGGCTTATTG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.70
29 17 0.28
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCAAGTTCGATTATAT
Found at i:205236643 original size:11 final size:11
Alignment explanation
Indices: 205236627--205236652 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
205236617 CAAAAGAGTT
205236627 AATGCAAAATA
1 AATGCAAAATA
205236638 AATGCAAAATA
1 AATGCAAAATA
205236649 AATG
1 AATG
205236653 TATGTACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.08, G:0.12, T:0.19
Consensus pattern (11 bp):
AATGCAAAATA
Found at i:205237270 original size:23 final size:24
Alignment explanation
Indices: 205237227--205237271 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
205237217 TTTAATTATT
205237227 TTGTTTTTTATTTATACAAATTTG
1 TTGTTTTTTATTTATACAAATTTG
205237251 TTGTTTTTTATTTATA-AAATT
1 TTGTTTTTTATTTATACAAATT
205237272 GGCATAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.64
Consensus pattern (24 bp):
TTGTTTTTTATTTATACAAATTTG
Found at i:205237481 original size:13 final size:13
Alignment explanation
Indices: 205237463--205237488 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
205237453 TAAAATTAAA
205237463 AATATAATAATTT
1 AATATAATAATTT
205237476 AATATAATAATTT
1 AATATAATAATTT
205237489 TATTTTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AATATAATAATTT
Found at i:205239660 original size:40 final size:40
Alignment explanation
Indices: 205239612--205239783 Score: 256
Period size: 40 Copynumber: 4.3 Consensus size: 40
205239602 TCTTCAGGAT
* * * *
205239612 TTAG-CCGGATATAACCACACGCCCAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
205239651 TTAACCCGGACATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
205239691 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
205239731 TTATCCCGGATATAACAACTCGCACAAATGCCTTCGGGGC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
205239771 TTAGCCCGGATAT
1 TTAGCCCGGATAT
205239784 CATTCAAATG
Statistics
Matches: 119, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 3 0.03
40 116 0.97
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:205243206 original size:31 final size:31
Alignment explanation
Indices: 205243168--205243230 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
205243158 TTCTATGTGA
205243168 TAGAAATTCGTATGTGAGCATGAATATAATG
1 TAGAAATTCGTATGTGAGCATGAATATAATG
205243199 TAGAAATTCGTATGTGAGCATGAATATAATG
1 TAGAAATTCGTATGTGAGCATGAATATAATG
205243230 T
1 T
205243231 GATTTGGGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.06, G:0.22, T:0.33
Consensus pattern (31 bp):
TAGAAATTCGTATGTGAGCATGAATATAATG
Found at i:205243309 original size:28 final size:28
Alignment explanation
Indices: 205243226--205243309 Score: 87
Period size: 29 Copynumber: 2.9 Consensus size: 28
205243216 GCATGAATAT
* *
205243226 AATGTGATTTGGGCCTAATGGGCTATATA
1 AATGTGA-TTGGGCCTAATGGGCCATACA
* * *
205243255 AATGTAATCTGGGCCTAATGGGTCATACG
1 AATGTGAT-TGGGCCTAATGGGCCATACA
* *
205243284 AATGTGATTGGGCCTAGTGGACCATA
1 AATGTGATTGGGCCTAATGGGCCATA
205243310 TACAAGTATG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
28 16 0.36
29 29 0.64
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATACA
Found at i:205245684 original size:17 final size:17
Alignment explanation
Indices: 205245664--205245698 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
205245654 CGCTGGGCTA
205245664 AATGGGCTGGTGGGCCC
1 AATGGGCTGGTGGGCCC
* *
205245681 AATGGGCTTGTTGGCCC
1 AATGGGCTGGTGGGCCC
205245698 A
1 A
205245699 CACAGATGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.14, C:0.23, G:0.40, T:0.23
Consensus pattern (17 bp):
AATGGGCTGGTGGGCCC
Found at i:205247136 original size:96 final size:96
Alignment explanation
Indices: 205247028--205247202 Score: 323
Period size: 96 Copynumber: 1.8 Consensus size: 96
205247018 AATCTCGACA
205247028 AAAATAGAGATCAAATTAGGGGATTTCAACAACAATGGGTTATGGGTTAATATTAAGGGTAAATC
1 AAAATAGAGATCAAATTAGGGGATTTCAACAACAATGGGTTATGGGTTAATATTAAGGGTAAATC
205247093 AATTAATGGCTTGTAAAATCATAAATTAATT
66 AATTAATGGCTTGTAAAATCATAAATTAATT
* * *
205247124 AAAATAGGGATCAAATTAGGGGATTTCAACAATAATGGGTTATGGGTTAATATTGAGGGTAAATC
1 AAAATAGAGATCAAATTAGGGGATTTCAACAACAATGGGTTATGGGTTAATATTAAGGGTAAATC
205247189 AATTAATGGCTTGT
66 AATTAATGGCTTGT
205247203 TAGGCTCAAA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 76 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (96 bp):
AAAATAGAGATCAAATTAGGGGATTTCAACAACAATGGGTTATGGGTTAATATTAAGGGTAAATC
AATTAATGGCTTGTAAAATCATAAATTAATT
Found at i:205248234 original size:6 final size:6
Alignment explanation
Indices: 205248214--205248253 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
205248204 TAAATAAGAT
* *
205248214 AAATAA AGATAA AAATGA AAATAA AAATAA TAAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA -AAATAA AAA
205248254 GTTTTTAAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:205251407 original size:40 final size:40
Alignment explanation
Indices: 205251176--205251400 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
205251166 TCGAATGATG
* * * *
205251176 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
205251216 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
205251256 TCCGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * *
205251295 TCCTGGTTAATTCCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
205251335 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
205251376 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
205251401 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 32 0.20
40 115 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:205265209 original size:30 final size:30
Alignment explanation
Indices: 205265173--205265332 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
205265163 GACAAGATTG
* * * * *
205265173 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
205265203 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
205265231 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
205265260 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
205265290 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
205265319 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
205265333 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:205265301 original size:59 final size:57
Alignment explanation
Indices: 205265173--205265332 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
205265163 GACAAGATTG
* * * * * *
205265173 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
205265231 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
205265290 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
205265333 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:205273279 original size:30 final size:30
Alignment explanation
Indices: 205273243--205273402 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
205273233 GACAAGATTG
* * * * *
205273243 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
205273273 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
205273301 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
205273330 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
205273360 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
205273389 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
205273403 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:205273371 original size:59 final size:57
Alignment explanation
Indices: 205273243--205273402 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
205273233 GACAAGATTG
* * * * * *
205273243 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
205273301 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
205273360 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
205273403 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:205285678 original size:40 final size:39
Alignment explanation
Indices: 205285634--205285762 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 39
205285624 TCGAATACAA
205285634 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * *
205285674 CCGGATAGAACGACTTGCACGAATTCCTTC-GGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
205285713 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
205285753 CCGGATATAA
1 CCGGATATAA
205285763 TTTCCAGCAT
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
38 3 0.04
39 28 0.38
40 42 0.58
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:205298670 original size:40 final size:39
Alignment explanation
Indices: 205298502--205298672 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
205298492 AGAAATTGAA
* *
205298502 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
205298542 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
205298582 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
205298622 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
205298662 TGATATCCGGG
1 TGATATCCGGG
205298673 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:205314368 original size:28 final size:29
Alignment explanation
Indices: 205314270--205314368 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
205314260 TCACAAATTG
* *
205314270 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
205314299 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
205314327 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
205314355 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
205314369 GGGTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:205316262 original size:39 final size:40
Alignment explanation
Indices: 205316142--205316284 Score: 130
Period size: 39 Copynumber: 3.6 Consensus size: 40
205316132 CCGCACCAAG
* * * * * * *
205316142 GCCTACGGGACTTAACCCGGATATCACGA-TTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* ** *
205316181 GCCTTC-GGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
205316220 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCAC-ATT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
205316259 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
205316285 TTTCCAGCAT
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
38 17 0.20
39 44 0.52
40 24 0.28
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
Found at i:205327573 original size:80 final size:80
Alignment explanation
Indices: 205327489--205327637 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
205327479 TATGGTAACC
* * * *
205327489 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
205327553 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
205327569 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
205327634 CCGG
66 CCGG
205327638 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:205327579 original size:40 final size:38
Alignment explanation
Indices: 205327530--205327637 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
205327520 ATCACGATTT
*
205327530 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
205327570 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
205327610 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
205327638 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:205333833 original size:30 final size:30
Alignment explanation
Indices: 205333797--205333897 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
205333787 GACAAGATTG
* * *
205333797 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
205333827 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
205333855 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
205333884 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
205333898 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:205333909 original size:29 final size:28
Alignment explanation
Indices: 205333826--205333901 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
205333816 AAAATTGTAC
* *
205333826 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
205333854 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
205333883 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
205333902 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:205336896 original size:43 final size:42
Alignment explanation
Indices: 205336849--205336967 Score: 107
Period size: 43 Copynumber: 2.8 Consensus size: 42
205336839 CTAGACGTGT
*
205336849 TCTTACATGTAATCAAACATCGATGCCATTGTCCCAAACAGGG
1 TCTTACATGTAATCAAACA-CGATGCCAATGTCCCAAACAGGG
* * * * *
205336892 TCTTACACT-AAATCAGATACGATGCCAATGTCCCAGACATGG
1 TCTTACA-TGTAATCAAACACGATGCCAATGTCCCAAACAGGG
* * *
205336934 TCTTACACGTAAAACAGAA-GCGATGCCAATGTCC
1 TCTTACATGT-AATCA-AACACGATGCCAATGTCC
205336968 TAGACGTAGT
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
42 27 0.44
43 32 0.52
44 2 0.03
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
TCTTACATGTAATCAAACACGATGCCAATGTCCCAAACAGGG
Found at i:205336924 original size:42 final size:43
Alignment explanation
Indices: 205336869--205336967 Score: 139
Period size: 42 Copynumber: 2.3 Consensus size: 43
205336859 AATCAAACAT
* *
205336869 CGATGCCATTGTCCCAAACAGGGTCTTACAC-TAAATCAGATA-
1 CGATGCCAATGTCCCAAACAGGGTCTTACACGTAAAACAGA-AG
* *
205336911 CGATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAAG
1 CGATGCCAATGTCCCAAACAGGGTCTTACACGTAAAACAGAAG
205336954 CGATGCCAATGTCC
1 CGATGCCAATGTCC
205336968 TAGACGTAGT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 29 0.57
43 22 0.43
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (43 bp):
CGATGCCAATGTCCCAAACAGGGTCTTACACGTAAAACAGAAG
Found at i:205336980 original size:43 final size:42
Alignment explanation
Indices: 205336869--205336984 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 42
205336859 AATCAAACAT
* * ** *
205336869 CGATGCCATTGTCCCAAACAGGGTCTTACACTAAATCAGATA
1 CGATGCCAATGTCCCAGACATAGTCTTACACTAAAACAGATA
*
205336911 CGATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGA-A
1 CGATGCCAATGTCCCAGACATAGTCTTACAC-TAAAACAGATA
* *
205336953 GCGATGCCAATGTCCTAGACGTAGTCTTACAC
1 -CGATGCCAATGTCCCAGACATAGTCTTACAC
205336985 ATTAACACAT
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
42 29 0.45
43 36 0.55
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (42 bp):
CGATGCCAATGTCCCAGACATAGTCTTACACTAAAACAGATA
Found at i:205339524 original size:40 final size:40
Alignment explanation
Indices: 205339480--205339662 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
205339470 AGTGGCTAAT
*
205339480 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACTATA
***
205339520 TCCGGGCTAAGTCCCGAAGGCATTCGTATGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACTATA
** * * *
205339560 TCTAGGCTAAGTCCCGAAGGCGTTTC-TGCAAGTTATTATA
1 TCCGGGCTAAGTCCCGAAGGC-ATTCGTGCAAGCTACTATA
* *
205339600 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACTATA
* * *
205339639 ACCGGGCTATGTCCCGAATGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
205339663 TGAACGAGTA
Statistics
Matches: 123, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 87 0.71
41 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGCTACTATA
Found at i:205339636 original size:79 final size:80
Alignment explanation
Indices: 205339484--205339662 Score: 209
Period size: 79 Copynumber: 2.2 Consensus size: 80
205339474 GCTAATTCCG
* *
205339484 GGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTAT
1 GGCTAAGTCCCGAAGGCATTCGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTAC
* * *
205339549 GAGCTACTATATCTA
66 AAGCTACTATAACCA
* * * * *
205339564 GGCTAAGTCCCGAAGGCGTTTC-TGCAAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGC-ATTCGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTA
* *
205339627 CAAGTTACTATAACCG
65 CAAGCTACTATAACCA
* *
205339643 GGCTATGTCCCGAATGCATT
1 GGCTAAGTCCCGAAGGCATT
205339663 TGAACGAGTA
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 2 0.02
79 50 0.60
80 28 0.34
81 3 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTCGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTAC
AAGCTACTATAACCA
Found at i:205344399 original size:29 final size:29
Alignment explanation
Indices: 205344366--205344439 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
205344356 GTGACGAGAT
205344366 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
205344395 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
205344424 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
205344440 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:205344455 original size:29 final size:29
Alignment explanation
Indices: 205344423--205344498 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
205344413 CTGGAAATAT
* *
205344423 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
205344452 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
205344481 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
205344499 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:205352365 original size:29 final size:29
Alignment explanation
Indices: 205352332--205352405 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
205352322 GTGACGAGAT
205352332 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
205352361 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
205352390 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
205352406 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:205352421 original size:29 final size:29
Alignment explanation
Indices: 205352389--205352464 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
205352379 CTGGAAATAT
* *
205352389 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
205352418 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
205352447 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
205352465 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:205364516 original size:40 final size:40
Alignment explanation
Indices: 205364450--205364616 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
205364440 AAATTGAATG
* * *
205364450 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
205364489 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
205364529 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
205364569 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
205364609 ATATCCGG
1 ATATCCGG
205364617 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:205369343 original size:93 final size:93
Alignment explanation
Indices: 205369231--205369402 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
205369221 GCCCATAAGT
* *
205369231 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
205369296 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
205369324 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
205369389 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
205369403 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:205369398 original size:46 final size:46
Alignment explanation
Indices: 205369223--205369398 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
205369213 TGTAACCCGC
* * *
205369223 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
205369269 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
205369319 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
205369362 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
205369399 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:205371825 original size:30 final size:30
Alignment explanation
Indices: 205371781--205371869 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
205371771 CAAAGATAAC
205371781 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
205371810 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
205371840 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
205371870 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:205371829 original size:15 final size:15
Alignment explanation
Indices: 205371781--205371860 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
205371771 CAAAGATAAC
*
205371781 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
205371795 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
205371810 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
205371825 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
205371840 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
205371855 AAGAAA
1 AAGAAA
205371861 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:205371869 original size:15 final size:15
Alignment explanation
Indices: 205371792--205371869 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
205371782 AGAAAACCGA
205371792 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
205371807 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
205371821 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
205371836 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
205371852 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
205371867 ATA
1 ATA
205371870 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:205374930 original size:93 final size:93
Alignment explanation
Indices: 205374818--205374989 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
205374808 GCCCATAAGT
* *
205374818 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
205374883 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
205374911 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
205374976 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
205374990 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:205374985 original size:46 final size:46
Alignment explanation
Indices: 205374810--205374985 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
205374800 TGTAACCCGC
* * *
205374810 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
205374856 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
205374906 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
205374949 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
205374986 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:205379498 original size:13 final size:12
Alignment explanation
Indices: 205379480--205379513 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
205379470 ACAAGTTTGA
205379480 AAAAAAAAATTCG
1 AAAAAAAAA-TCG
205379493 AAAAAAAAATCG
1 AAAAAAAAATCG
205379505 AAAAAAAAA
1 AAAAAAAAA
205379514 AGAGTGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.79, C:0.06, G:0.06, T:0.09
Consensus pattern (12 bp):
AAAAAAAAATCG
Found at i:205379514 original size:13 final size:14
Alignment explanation
Indices: 205379478--205379514 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
205379468 ATACAAGTTT
205379478 GAAAAAAAAAATTC
1 GAAAAAAAAAATTC
205379492 G-AAAAAAAAA-TC
1 GAAAAAAAAAATTC
205379504 GAAAAAAAAAA
1 GAAAAAAAAAA
205379515 GAGTGATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 3 0.14
13 18 0.82
14 1 0.05
ACGTcount: A:0.78, C:0.05, G:0.08, T:0.08
Consensus pattern (14 bp):
GAAAAAAAAAATTC
Found at i:205386879 original size:39 final size:39
Alignment explanation
Indices: 205386707--205386894 Score: 233
Period size: 39 Copynumber: 4.9 Consensus size: 39
205386697 TGTGTATGAA
*
205386707 TGTGCGA-TTGTGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
205386744 TGTGCGA--T-TGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
205386780 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
205386819 TGTGCGAGTTGTGATATCCGGGTTAAGTCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* ** * *
205386858 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
205386895 GTTTGAACGA
Statistics
Matches: 133, Mismatches: 13, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
35 16 0.12
36 19 0.14
37 7 0.05
38 1 0.01
39 82 0.62
40 8 0.06
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:205394844 original size:38 final size:38
Alignment explanation
Indices: 205394793--205394946 Score: 247
Period size: 38 Copynumber: 4.0 Consensus size: 38
205394783 GATGTGTATG
205394793 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
205394831 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
*
205394869 AATGTGCGAGA-TATGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGA-ATTGTGATATCCGGGCTAAGCCCGAAGGC
* * *
205394907 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
205394946 A
1 A
205394947 TTTGTGCGGG
Statistics
Matches: 108, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
38 97 0.90
39 11 0.10
ACGTcount: A:0.26, C:0.20, G:0.32, T:0.22
Consensus pattern (38 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
Found at i:205394970 original size:40 final size:39
Alignment explanation
Indices: 205394812--205394984 Score: 154
Period size: 38 Copynumber: 4.5 Consensus size: 39
205394802 ATTGTGATAT
* * *** *
205394812 CCGGGCTAAG-CCCGAAGGCAATGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACCATAA
* * ** *
205394850 CCGGGCTAAG-CCCGAAGGCAATGTGCGAGATATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACCATAA
*** *
205394888 CCGGGCTAAG-CCCGAAGGCATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACCATAA
* *
205394926 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACCATAA
*
205394966 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
205394985 TGTTTGAACG
Statistics
Matches: 119, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
38 79 0.66
39 10 0.08
40 30 0.25
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.21
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACCATAA
Found at i:205404235 original size:37 final size:37
Alignment explanation
Indices: 205404182--205404272 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
205404172 TATAAAAGAA
*
205404182 GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
205404219 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
205404256 GTCTTACCCGGAACATA
1 GTCTTACCCGG-ACATA
205404273 TTCCAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:205404388 original size:49 final size:49
Alignment explanation
Indices: 205404335--205404553 Score: 420
Period size: 49 Copynumber: 4.5 Consensus size: 49
205404325 TCGGCTTTAC
*
205404335 CACATATGCATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
1 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
205404384 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
1 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
205404433 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
1 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
*
205404482 CACATATACATACACTTTCACATTCACCACATCGGCCATTTGGCCTCAT
1 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
205404531 CACATATACATACACTTTCACAT
1 CACATATACATACACTTTCACAT
205404554 ATTTTAGTAT
Statistics
Matches: 168, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 168 1.00
ACGTcount: A:0.31, C:0.34, G:0.08, T:0.27
Consensus pattern (49 bp):
CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
Found at i:205407466 original size:40 final size:41
Alignment explanation
Indices: 205407422--205407520 Score: 105
Period size: 41 Copynumber: 2.4 Consensus size: 41
205407412 TCGATTGTCC
* * ***
205407422 TCGGGACATAGCCCGG-TTATAGTGA-TTCGCACAATTTCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAAAGCCT
205407462 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
*
205407503 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
205407521 ACCATTCGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.39
41 29 0.59
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
Found at i:205408040 original size:29 final size:29
Alignment explanation
Indices: 205408004--205408135 Score: 237
Period size: 29 Copynumber: 4.6 Consensus size: 29
205407994 TATTGAAAAA
* *
205408004 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
205408033 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
205408062 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
205408091 CTCGCACACATAGAGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
205408120 CTCGCACACATAGTGC
1 CTCGCACACATAGTGC
205408136 TCGGTTAACG
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:205408156 original size:58 final size:58
Alignment explanation
Indices: 205408004--205408167 Score: 224
Period size: 58 Copynumber: 2.8 Consensus size: 58
205407994 TATTGAAAAA
* * *
205408004 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACGGATCTCGCACACATAGTGCCTCGATTACTGAT
* *
205408062 CTCGCACACATAGTGCCTCGATTACTGATCTCGCACACATAGAGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACGGATCTCGCACACATAGTGCCTCGATTACTGAT
* * *
205408120 CTCGCACACATAGTG-CTCGGTTAACGGAAT-TTGCACACACAGTGCCTC
1 CTCGCACACATAGTGCCTCGATT-ACGG-ATCTCGCACACATAGTGCCTC
205408168 TAATCATTCG
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 6 0.06
58 88 0.92
59 2 0.02
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (58 bp):
CTCGCACACATAGTGCCTCGATTACGGATCTCGCACACATAGTGCCTCGATTACTGAT
Found at i:205408156 original size:87 final size:87
Alignment explanation
Indices: 205408004--205408167 Score: 233
Period size: 87 Copynumber: 1.9 Consensus size: 87
205407994 TATTGAAAAA
* *
205408004 CTCGCACACACAGTGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACTGATCTCGCAC
1 CTCGCACACACAGAGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACGGATCTCGCAC
*
205408069 ACATAGTGCCTCGATTACTGAT
66 ACACAGTGCCTCGATTACTGAT
* * * *
205408091 CTCGCACACATAGAGCCTCGATTACTGATCTCGCACACATAGTG-CTCGGTTAACGGAAT-TTGC
1 CTCGCACACACAGAGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATT-ACGG-ATCTCGC
205408154 ACACACAGTGCCTC
64 ACACACAGTGCCTC
205408168 TAATCATTCG
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
86 6 0.09
87 60 0.88
88 2 0.03
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (87 bp):
CTCGCACACACAGAGCCTCAATTACTGATCTCGCACACATAGTGCCTCGATTACGGATCTCGCAC
ACACAGTGCCTCGATTACTGAT
Found at i:205410273 original size:37 final size:37
Alignment explanation
Indices: 205410220--205410341 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
205410210 TATAAAAGAA
* *
205410220 GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
205410257 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
205410294 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
205410331 GTCTTACCCGG
1 GTCTTACCCGG
205410342 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:205410463 original size:49 final size:49
Alignment explanation
Indices: 205410410--205410579 Score: 322
Period size: 49 Copynumber: 3.5 Consensus size: 49
205410400 TCGGCTTTAC
*
205410410 CACATATGCATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
1 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
205410459 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
1 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
*
205410508 CACATATACATACACTTTCACATTCACCACATCGGCCATTTGGCCTCAT
1 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
205410557 CACATATACATACACTTTCACAT
1 CACATATACATACACTTTCACAT
205410580 ATTTTAGTAT
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 119 1.00
ACGTcount: A:0.31, C:0.34, G:0.08, T:0.28
Consensus pattern (49 bp):
CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
Found at i:205415433 original size:40 final size:40
Alignment explanation
Indices: 205415378--205415587 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
205415368 AACATTGGAA
205415378 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205415418 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205415458 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
205415498 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
205415537 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
205415578 CTATATCCGG
1 ATATATCCGG
205415588 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:205419303 original size:30 final size:30
Alignment explanation
Indices: 205419269--205419365 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
205419259 TAAACTAAAA
205419269 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
205419299 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
205419329 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
205419359 TGAGCTA
1 TGAGCTA
205419366 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:205421498 original size:30 final size:29
Alignment explanation
Indices: 205421460--205421543 Score: 91
Period size: 30 Copynumber: 2.8 Consensus size: 29
205421450 TTCTTTTGTT
*
205421460 TCAATTTCTTTTTCATCTTCTTTTT-ACTC
1 TCAATTTCTTTTTCAT-TTCTTTTTCAATC
*
205421489 TCAAATTTC-TTTTCGTTCTCTTTTTCAATC
1 TC-AATTTCTTTTTCATT-TCTTTTTCAATC
*
205421519 TCATTTTCTTTTTCATTTTCTTTTT
1 TCAATTTCTTTTTCA-TTTCTTTTT
205421544 GCTTTTCAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
28 1 0.02
29 20 0.43
30 23 0.50
31 2 0.04
ACGTcount: A:0.13, C:0.21, G:0.01, T:0.64
Consensus pattern (29 bp):
TCAATTTCTTTTTCATTTCTTTTTCAATC
Found at i:205421543 original size:18 final size:18
Alignment explanation
Indices: 205421494--205421549 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
205421484 TACTCTCAAA
* *
205421494 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
205421511 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
205421529 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
205421548 TT
1 TT
205421550 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:205421550 original size:12 final size:12
Alignment explanation
Indices: 205421519--205421543 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
205421509 TTTTTCAATC
205421519 TCATTTTCTTTT
1 TCATTTTCTTTT
205421531 TCATTTTCTTTT
1 TCATTTTCTTTT
205421543 T
1 T
205421544 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:205421561 original size:12 final size:12
Alignment explanation
Indices: 205421546--205421576 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
205421536 TTCTTTTTGC
205421546 TTTTCAAAGGCT
1 TTTTCAAAGGCT
205421558 TTTTCAAAGGCT
1 TTTTCAAAGGCT
205421570 TTTTCAA
1 TTTTCAA
205421577 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:205421634 original size:5 final size:5
Alignment explanation
Indices: 205421624--205421680 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
205421614 CTCTTGCCTC
*
205421624 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
205421671 TCTTT TCTTT
1 TCTTT TCTTT
205421681 ATTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:205421664 original size:15 final size:14
Alignment explanation
Indices: 205421624--205421680 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
205421614 CTCTTGCCTC
*
205421624 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
205421639 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
205421654 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
205421671 TCTTTTCTTT
1 TCTTTTCTTT
205421681 ATTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:205421690 original size:21 final size:20
Alignment explanation
Indices: 205421622--205421691 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 20
205421612 GCCTCTTGCC
205421622 TCTCTTTTCTTTTTATTTCATTT
1 TCTCTTTTC-TTTT-TTT-ATTT
**
205421645 TCT-TTTTCTTCTTTTGCTTT
1 TCTCTTTTCTT-TTTTTATTT
205421665 T-TCTTTTCTTTTCTTTATTT
1 TCTCTTTTCTTTT-TTTATTT
205421685 TCTCTTT
1 TCTCTTT
205421692 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
19 3 0.08
20 17 0.44
21 9 0.23
22 7 0.18
23 3 0.08
ACGTcount: A:0.04, C:0.19, G:0.01, T:0.76
Consensus pattern (20 bp):
TCTCTTTTCTTTTTTTATTT
Found at i:205422612 original size:11 final size:10
Alignment explanation
Indices: 205422596--205422648 Score: 61
Period size: 11 Copynumber: 4.9 Consensus size: 10
205422586 ATTAAACACT
205422596 TTTTTTTTAGA
1 TTTTTTTTA-A
205422607 TTTTTTTCTAA
1 TTTTTTT-TAA
*
205422618 TTTTTTTGAA
1 TTTTTTTTAA
205422628 TTTTTTTTCAAA
1 TTTTTTTT--AA
205422640 TTTTTTTTA
1 TTTTTTTTA
205422649 CTTGTATAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
10 10 0.27
11 15 0.41
12 12 0.32
ACGTcount: A:0.19, C:0.04, G:0.04, T:0.74
Consensus pattern (10 bp):
TTTTTTTTAA
Found at i:205424386 original size:30 final size:30
Alignment explanation
Indices: 205424352--205424448 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
205424342 GAAACTAAAA
205424352 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
205424382 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
205424412 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
205424442 TGAGCTA
1 TGAGCTA
205424449 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:205424922 original size:10 final size:10
Alignment explanation
Indices: 205424901--205424966 Score: 64
Period size: 10 Copynumber: 6.6 Consensus size: 10
205424891 CATGAGATTT
205424901 TGATAT-ACA
1 TGATATGACA
205424910 TGATATGACA
1 TGATATGACA
205424920 TGATATGACA
1 TGATATGACA
*
205424930 TGA-GTGCACA
1 TGATATG-ACA
**
205424940 TGATATGTTA
1 TGATATGACA
*
205424950 TGAGATGCACA
1 TGATATG-ACA
205424961 TGATAT
1 TGATAT
205424967 ACTCATTATA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
9 8 0.18
10 29 0.64
11 8 0.18
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (10 bp):
TGATATGACA
Found at i:205424932 original size:20 final size:20
Alignment explanation
Indices: 205424901--205424966 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 20
205424891 CATGAGATTT
205424901 TGATAT-ACATGATATG-ACA
1 TGATATGACATGA-ATGCACA
*
205424920 TGATATGACATGAGTGCACA
1 TGATATGACATGAATGCACA
**
205424940 TGATATGTTATGAGATGCACA
1 TGATATGACATGA-ATGCACA
205424961 TGATAT
1 TGATAT
205424967 ACTCATTATA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
19 8 0.20
20 20 0.50
21 12 0.30
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
TGATATGACATGAATGCACA
Found at i:205425055 original size:25 final size:25
Alignment explanation
Indices: 205425014--205425084 Score: 108
Period size: 25 Copynumber: 2.9 Consensus size: 25
205425004 AAGAAGTGCA
*
205425014 AAAAAGGGCTTTG-CCCAGTTTACC
1 AAAAAGGGCTTTGCCCCAGTTAACC
* *
205425038 GAAAAGGGCTTTGCCCCAGTTAATC
1 AAAAAGGGCTTTGCCCCAGTTAACC
205425063 AAAAAGGGCTTTGCCCCAGTTA
1 AAAAAGGGCTTTGCCCCAGTTA
205425085 TTAAAAGAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 12 0.29
25 30 0.71
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAAGGGCTTTGCCCCAGTTAACC
Found at i:205425096 original size:24 final size:25
Alignment explanation
Indices: 205425015--205425096 Score: 84
Period size: 24 Copynumber: 3.4 Consensus size: 25
205425005 AGAAGTGCAA
* *
205425015 AAAAG-GGCTTTG-CCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTAATC
205425038 GAAAAG-GGCTTTGCCCCAGTTAATC
1 -AAAAGAGGCTTTGCCCCAGTTAATC
*
205425063 AAAA-AGGGCTTTGCCCCAGTT-ATT
1 AAAAGA-GGCTTTGCCCCAGTTAATC
205425087 AAAAGAGGCT
1 AAAAGAGGCT
205425097 AGGCCTCCAA
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
24 26 0.51
25 25 0.49
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTAATC
Found at i:205427877 original size:14 final size:14
Alignment explanation
Indices: 205427839--205427885 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
205427829 GTACGAATGG
*
205427839 AATGGTAGGAACGA
1 AATGGTAGGAACAA
205427853 AA-GGTAGGAACAA
1 AATGGTAGGAACAA
*
205427866 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
205427880 ATTGGT
1 AATGGT
205427886 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 12 0.41
14 17 0.59
ACGTcount: A:0.45, C:0.06, G:0.30, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:205434395 original size:10 final size:10
Alignment explanation
Indices: 205434380--205434425 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
205434370 AATCACTTTT
205434380 TTTTTTTCGA
1 TTTTTTTCGA
**
205434390 TTTTTTTTTA
1 TTTTTTTCGA
205434400 TTTTTTTCGA
1 TTTTTTTCGA
*
205434410 TTTTTTT-TA
1 TTTTTTTCGA
205434419 TTTTTTT
1 TTTTTTT
205434426 AACTTGTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
9 8 0.26
10 23 0.74
ACGTcount: A:0.09, C:0.04, G:0.04, T:0.83
Consensus pattern (10 bp):
TTTTTTTCGA
Found at i:205434403 original size:19 final size:18
Alignment explanation
Indices: 205434376--205434424 Score: 73
Period size: 18 Copynumber: 2.7 Consensus size: 18
205434366 CATAAATCAC
205434376 TTTTT-TTTTTTCGATTTT
1 TTTTTATTTTTTCGA-TTT
205434394 TTTTTATTTTTTTCGATTT
1 TTTTTA-TTTTTTCGATTT
205434413 TTTTTATTTTTT
1 TTTTTATTTTTT
205434425 TAACTTGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 11 0.38
19 9 0.31
20 9 0.31
ACGTcount: A:0.08, C:0.04, G:0.04, T:0.84
Consensus pattern (18 bp):
TTTTTATTTTTTCGATTT
Found at i:205434421 original size:9 final size:9
Alignment explanation
Indices: 205434391--205434425 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
205434381 TTTTTTCGAT
205434391 TTTTTTTTA
1 TTTTTTTTA
*
205434400 TTTTTTTCGA
1 TTTTTTT-TA
205434410 TTTTTTTTA
1 TTTTTTTTA
205434419 TTTTTTT
1 TTTTTTT
205434426 AACTTGTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.09, C:0.03, G:0.03, T:0.86
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:205434425 original size:19 final size:20
Alignment explanation
Indices: 205434376--205434425 Score: 86
Period size: 19 Copynumber: 2.6 Consensus size: 20
205434366 CATAAATCAC
205434376 TTTT-TTTTTTTCGATTTTT
1 TTTTATTTTTTTCGATTTTT
205434395 TTTTATTTTTTTCGA-TTTT
1 TTTTATTTTTTTCGATTTTT
205434414 TTTTATTTTTTT
1 TTTTATTTTTTT
205434426 AACTTGTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 20 0.67
20 10 0.33
ACGTcount: A:0.08, C:0.04, G:0.04, T:0.84
Consensus pattern (20 bp):
TTTTATTTTTTTCGATTTTT
Found at i:205434825 original size:14 final size:14
Alignment explanation
Indices: 205434778--205434825 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
205434768 GTACGAATGG
*
205434778 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
205434792 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
205434806 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
205434820 ATTGGT
1 AATGGT
205434826 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:205444529 original size:12 final size:13
Alignment explanation
Indices: 205444512--205444546 Score: 63
Period size: 12 Copynumber: 2.8 Consensus size: 13
205444502 CATAAATCAC
205444512 TTTTTTTTTCG-A
1 TTTTTTTTTCGAA
205444524 TTTTTTTTTCGAA
1 TTTTTTTTTCGAA
205444537 TTTTTTTTTC
1 TTTTTTTTTC
205444547 AAACTTGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.77
Consensus pattern (13 bp):
TTTTTTTTTCGAA
Found at i:205446169 original size:10 final size:10
Alignment explanation
Indices: 205446154--205446180 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
205446144 TAAGTTGAAG
205446154 TTGAGCTGAT
1 TTGAGCTGAT
205446164 TTGAGCTGAT
1 TTGAGCTGAT
205446174 TTGAGCT
1 TTGAGCT
205446181 TGAAGGAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.30, T:0.41
Consensus pattern (10 bp):
TTGAGCTGAT
Found at i:205462808 original size:13 final size:13
Alignment explanation
Indices: 205462790--205462818 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
205462780 TTTCAATCTT
205462790 TTTGTTTTGGTCA
1 TTTGTTTTGGTCA
205462803 TTTGTTTTGGTCA
1 TTTGTTTTGGTCA
205462816 TTT
1 TTT
205462819 TTGGTATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.21, T:0.66
Consensus pattern (13 bp):
TTTGTTTTGGTCA
Found at i:205465433 original size:48 final size:48
Alignment explanation
Indices: 205465324--205465510 Score: 164
Period size: 48 Copynumber: 3.8 Consensus size: 48
205465314 GTCATCAGGG
* *
205465324 GATACATTGATTTGGCTTCGGGCCATGATATTGGCACTTCAGGTGCGA
1 GATATATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGA
* * ** *
205465372 GCT-TCATTTATTTGATTTTGGGCCATGATATTAGCACTTC-GTGTGCGA
1 GATAT-ATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAG-GTGCGA
* ** * *
205465420 GATATATTGATTTGGGTTCGGGTAATGATATTAGTACTTCAGATGCGA
1 GATATATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGA
* *
205465468 GATATATATATTGAGTTT-GCTTCGGGCCAAGATATTGGCACTT
1 G----ATATATTGA-TTTGGCTTCGGGCCATGATATTAGCACTT
205465511 AGTGTGCAAG
Statistics
Matches: 108, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
47 1 0.01
48 74 0.69
49 2 0.02
52 28 0.26
53 3 0.03
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (48 bp):
GATATATTGATTTGGCTTCGGGCCATGATATTAGCACTTCAGGTGCGA
Found at i:205469870 original size:28 final size:28
Alignment explanation
Indices: 205469801--205469901 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
205469791 GACAAGATTG
* * * *
205469801 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
205469831 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
205469859 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
205469888 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
205469902 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:205477813 original size:28 final size:28
Alignment explanation
Indices: 205477744--205477844 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
205477734 GACAAGATTG
* * * *
205477744 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
205477774 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
205477802 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
205477831 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
205477845 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Done.