Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 654 of 770
Found at i:205488165 original size:29 final size:29
Alignment explanation
Indices: 205488075--205488234 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
205488065 ACTCGATTTC
* * **
205488075 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
205488104 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
205488132 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
205488162 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
205488191 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
205488220 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
205488235 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:205495101 original size:42 final size:42
Alignment explanation
Indices: 205494993--205495112 Score: 138
Period size: 42 Copynumber: 2.9 Consensus size: 42
205494983 TACCATGCCA
*
205494993 ATGCCATATCCTAGATATTGTCTTACATG-A-TCTCATATCG
1 ATGCCATATCCTAGATATTGTCTTACACGAAGTCTCATATCG
* * * *
205495033 ATGCCAATAGCCTAGCTATTGTCTTACACGAAGTCTCTTATTG
1 ATGCC-ATATCCTAGATATTGTCTTACACGAAGTCTCATATCG
* *
205495076 ATGCCATATCCCAGATATGGTCTTACAC-ATAGTCTCA
1 ATGCCATATCCTAGATATTGTCTTACACGA-AGTCTCA
205495113 ACTAACCCTA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
40 5 0.08
41 22 0.33
42 26 0.39
43 13 0.20
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCTAGATATTGTCTTACACGAAGTCTCATATCG
Found at i:205501126 original size:40 final size:40
Alignment explanation
Indices: 205501071--205501280 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
205501061 AACATTGGAA
205501071 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205501111 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205501151 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
205501191 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
205501230 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
205501271 CTATATCCGG
1 ATATATCCGG
205501281 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:205509261 original size:39 final size:40
Alignment explanation
Indices: 205509201--205509355 Score: 275
Period size: 39 Copynumber: 4.0 Consensus size: 40
205509191 AACATTGGAA
205509201 ATATAT-CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205509240 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205509279 ATATATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205509318 ATATATCC-GGCTAAGACCCGAAGGC-TTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205509356 CCAAGGAAGG
Statistics
Matches: 114, Mismatches: 0, Indels: 5
0.96 0.00 0.04
Matches are distributed among these distances:
38 21 0.18
39 83 0.73
40 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:205512604 original size:40 final size:39
Alignment explanation
Indices: 205512530--205512669 Score: 201
Period size: 39 Copynumber: 3.5 Consensus size: 39
205512520 AAACCAAGTA
* *
205512530 CCTTCGGGATTTAGCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTCAA-TAGCACAAATG
* *
205512569 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAG-CCGGATATAGTCAATAGCACAAATG
*
205512609 CCTTCGGGACTTAGCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTCAATAGCACAAATG
205512648 CCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAG-CCGGATA
205512670 ATCATTCGAA
Statistics
Matches: 91, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
39 49 0.54
40 39 0.43
41 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTCAATAGCACAAATG
Found at i:205521002 original size:40 final size:40
Alignment explanation
Indices: 205520927--205521069 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 40
205520917 CAAACTCAAG
* * *
205520927 TGCCTTCGGGATTTAG-CC-GATATAG-CAACTCGCACAGA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAA
* *
205520965 TGCCTTTGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* * *
205521005 AGCCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* * *
205521045 TGCCCTCGGGACTTAACCTGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
205521070 CATTCGAATA
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
38 13 0.15
39 2 0.02
40 70 0.80
41 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
Found at i:205531958 original size:40 final size:40
Alignment explanation
Indices: 205531903--205532112 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
205531893 AACATTGGAA
205531903 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205531943 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205531983 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
205532023 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
205532062 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
205532103 CTATATCCGG
1 ATATATCCGG
205532113 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:205540094 original size:40 final size:40
Alignment explanation
Indices: 205540039--205540248 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
205540029 AACATTGGAA
205540039 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205540079 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205540119 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
205540159 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
205540198 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
205540239 CTATATCCGG
1 ATATATCCGG
205540249 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:205548702 original size:29 final size:29
Alignment explanation
Indices: 205548674--205548775 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
205548664 CCTCCGAGCT
** * * *
205548674 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
205548703 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
205548732 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
205548761 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
205548776 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:205555965 original size:43 final size:43
Alignment explanation
Indices: 205555892--205556015 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 43
205555882 ATATAGCTCG
* * *
205555892 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
** * * **
205555933 TATTGATGCGACTGTCCCAGACATGGTCTTACACATAATCACAA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
*
205555977 TACAATGCCAATGTCCCAGACATGGTTTTACATGTAATC
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
205556016 TCATCTCGGT
Statistics
Matches: 64, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
41 2 0.03
42 4 0.06
43 55 0.86
44 3 0.05
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
Found at i:205558515 original size:22 final size:23
Alignment explanation
Indices: 205558488--205558533 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
205558478 AGCTATCTAC
205558488 AAATCAAAT-TTCCAAGATTACA
1 AAATCAAATATTCCAAGATTACA
* * *
205558510 AAATCATATATTCTAATATTACA
1 AAATCAAATATTCCAAGATTACA
205558533 A
1 A
205558534 GTTATCTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (23 bp):
AAATCAAATATTCCAAGATTACA
Found at i:205563706 original size:40 final size:40
Alignment explanation
Indices: 205563651--205563835 Score: 248
Period size: 40 Copynumber: 4.6 Consensus size: 40
205563641 TATTCGGATG
*
205563651 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
*
205563691 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCT
* **
205563734 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGTTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
* *
205563774 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
*
205563814 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
205563836 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 16 0.13
40 72 0.57
41 2 0.02
42 1 0.01
43 35 0.28
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
Found at i:205563794 original size:83 final size:80
Alignment explanation
Indices: 205563655--205563835 Score: 247
Period size: 83 Copynumber: 2.2 Consensus size: 80
205563645 CGGATGATAT
** *
205563655 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCGAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTG
205563720 TGCGAGTAGTTGCTATAC
66 TGC--G-AGTTGCTATAC
** * *
205563738 CCGGGCTAAGTCCCGAAGGCATTTGTGTTAGTGACTATATCTGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTG
*
205563803 TGCGAGTTGCTATAT
66 TGCGAGTTGCTATAC
*
205563818 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
205563836 TACTTGGGTT
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 15 0.17
80 12 0.13
81 1 0.01
83 61 0.69
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTG
TGCGAGTTGCTATAC
Found at i:205566933 original size:18 final size:18
Alignment explanation
Indices: 205566910--205566955 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
205566900 CAAACAAAAC
*
205566910 AGTCCAAAAAGTCCGGAG
1 AGTCCAAAAAGTCCAGAG
205566928 AGTCCAAAAAGTCCAGAG
1 AGTCCAAAAAGTCCAGAG
205566946 AGTCCAAAAA
1 AGTCCAAAAA
205566956 TTACAAAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.46, C:0.22, G:0.22, T:0.11
Consensus pattern (18 bp):
AGTCCAAAAAGTCCAGAG
Found at i:205566940 original size:9 final size:9
Alignment explanation
Indices: 205566904--205566955 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
205566894 AAAATTCAAA
205566904 CAAAACAGTC
1 CAAAA-AGTC
205566914 CAAAAAGTC
1 CAAAAAGTC
** *
205566923 CGGAGAGTC
1 CAAAAAGTC
205566932 CAAAAAGTC
1 CAAAAAGTC
* *
205566941 CAGAGAGTC
1 CAAAAAGTC
205566950 CAAAAA
1 CAAAAA
205566956 TTACAAAACT
Statistics
Matches: 32, Mismatches: 10, Indels: 1
0.74 0.23 0.02
Matches are distributed among these distances:
9 27 0.84
10 5 0.16
ACGTcount: A:0.48, C:0.23, G:0.19, T:0.10
Consensus pattern (9 bp):
CAAAAAGTC
Found at i:205568470 original size:12 final size:12
Alignment explanation
Indices: 205568455--205568481 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
205568445 ATATTATCTC
205568455 AACATCCCCACT
1 AACATCCCCACT
205568467 AACATCCCCACT
1 AACATCCCCACT
205568479 AAC
1 AAC
205568482 CACTAACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.48, G:0.00, T:0.15
Consensus pattern (12 bp):
AACATCCCCACT
Found at i:205570089 original size:41 final size:41
Alignment explanation
Indices: 205570044--205570161 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
205570034 TGAAAGATAA
205570044 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
205570085 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
205570115 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
205570156 ATGTAG
1 ATGTAG
205570162 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:205570100 original size:71 final size:71
Alignment explanation
Indices: 205570012--205570175 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
205570002 GAGATGTATC
205570012 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
205570077 AGGACA
66 AGGACA
205570083 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
205570148 AGGACA
66 AGGACA
205570154 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
205570176 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:205587700 original size:15 final size:16
Alignment explanation
Indices: 205587672--205587701 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
205587662 ATACAAAGAA
205587672 TTTCTTTGTTGTTGTT
1 TTTCTTTGTTGTTGTT
205587688 TTTCTTT-TTGTTGT
1 TTTCTTTGTTGTTGT
205587702 GCTGTCCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.00, C:0.07, G:0.17, T:0.77
Consensus pattern (16 bp):
TTTCTTTGTTGTTGTT
Found at i:205588370 original size:44 final size:44
Alignment explanation
Indices: 205588271--205588424 Score: 157
Period size: 45 Copynumber: 3.5 Consensus size: 44
205588261 TCTGCTCTAT
* ** * *
205588271 TGCAACTTCAAGGAGATAAGA-TCTGCTATTTTCAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGACTC-G-TAACTTCAACCTGCCCCAC
* * *
205588316 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAGCTTGCCCCAC
1 TGCAACTTCAGGGAGATAAGACTCGTAACTTCAACCTGCCCCAC
* *
205588360 TGCAACTTCAGAGAGGTAAGGACTCGTAACTTCAACCTGCCCCAC
1 TGCAACTTCAGGGAGATAA-GACTCGTAACTTCAACCTGCCCCAC
* * *
205588405 TGTAACTTTAGGGGGATAAG
1 TGCAACTTCAGGGAGATAAG
205588425 GTTTATGGCT
Statistics
Matches: 89, Mismatches: 18, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
44 31 0.35
45 57 0.64
46 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGACTCGTAACTTCAACCTGCCCCAC
Found at i:205588696 original size:44 final size:43
Alignment explanation
Indices: 205588644--205588783 Score: 122
Period size: 44 Copynumber: 3.2 Consensus size: 43
205588634 CCAATGCCAT
205588644 TTCAAGGAGAAGAGATTTGTAGCCTCGATCTACTCAGCTGAAAC
1 TTCAAGGAGAAGAGATTTGTAGCCTCGATCTACTCA-CTGAAAC
*** * * * * ** * ** *
205588688 TTCAAGGAGATCTG--CTGTGGCTTCGAGCCGCTCCAATGCCAT
1 TTCAAGGAGAAGAGATTTGTAGCCTCGATCTACT-CACTGAAAC
205588730 TTCAAGGAGAAGAGATTTGTAGCCTCGATCTACTCTACTGAAAC
1 TTCAAGGAGAAGAGATTTGTAGCCTCGATCTACTC-ACTGAAAC
205588774 TTCAAGGAGA
1 TTCAAGGAGA
205588784 TACGAACTGT
Statistics
Matches: 66, Mismatches: 26, Indels: 8
0.66 0.26 0.08
Matches are distributed among these distances:
42 26 0.39
43 3 0.05
44 37 0.56
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (43 bp):
TTCAAGGAGAAGAGATTTGTAGCCTCGATCTACTCACTGAAAC
Found at i:205588945 original size:44 final size:44
Alignment explanation
Indices: 205588897--205589125 Score: 143
Period size: 44 Copynumber: 5.2 Consensus size: 44
205588887 ATCTGCTCCA
*
205588897 CTACTGCTTAGGAAGATAAGATCTATAATTTCTAGCCTGTTACC
1 CTACTGCTTAGGGAGATAAGATCTATAATTTCTAGCCTGTTACC
* * * ** * *
205588941 CTACTACTTAGGGAGTTAA-AGCTCATCGTCTTCGA-TCTGTT-CC
1 CTACTGCTTAGGGAGATAAGATCT-ATAAT-TTCTAGCCTGTTACC
* *
205588984 ACTACTTCTTAGGGATATAAGATCTATAATTT-TCAGCCTGTTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTCT-AGCCTGTTACC
* * * ** * * *
205589029 CTACTACTTAGGG-GGTAAG-GCTCATCGTCTTCGATCTTG-T-CC
1 CTACTGCTTAGGGAGATAAGATCT-ATAAT-TTCTAGCCTGTTACC
* *
205589071 ACTACTGCTTAGGGAGATAAGATCTGTAATTT-TCAGCCTATTACC
1 -CTACTGCTTAGGGAGATAAGATCTATAATTTCT-AGCCTGTTACC
205589116 CTACTGCTTA
1 CTACTGCTTA
205589126 AGGGGTTAAG
Statistics
Matches: 134, Mismatches: 35, Indels: 32
0.67 0.17 0.16
Matches are distributed among these distances:
42 4 0.03
43 33 0.25
44 84 0.63
45 13 0.10
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (44 bp):
CTACTGCTTAGGGAGATAAGATCTATAATTTCTAGCCTGTTACC
Found at i:205588985 original size:88 final size:87
Alignment explanation
Indices: 205588881--205589183 Score: 412
Period size: 88 Copynumber: 3.5 Consensus size: 87
205588871 AGATTTGTTA
* * *
205588881 TCTTTGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTATAA-TTTCTAGCCTGTTACCCTAC
1 TCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTC-AGCCTGTTACCCTAC
*
205588945 TACTTAGGGAGTTAAAGCTCATCG
65 TACTTAGGG-GTTAAGGCTCATCG
* *
205588969 TCTTCGATCTGTTCCACTACTTCTTAGGGATATAAGATCTATAATTTTCAGCCTGTTACCCTACT
1 TCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACCCTACT
*
205589034 ACTTAGGGGGTAAGGCTCATCG
66 ACTTAGGGGTTAAGGCTCATCG
* *
205589056 TCTTCGATCT-TGTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTATTACCCTAC
1 TCTTCGATCTGT-TCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACCCTAC
* * *
205589120 TGCTTAAGGGGTTAAGGCTTACCG
65 TACTT-AGGGGTTAAGGCTCATCG
** **
205589144 TCTTCGATCTGTTCTGCTACTATTTAGGGAGATAAGATCT
1 TCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCT
205589184 GCAATTTGGC
Statistics
Matches: 192, Mismatches: 19, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
86 1 0.01
87 74 0.39
88 112 0.58
89 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (87 bp):
TCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCTGTTACCCTACT
ACTTAGGGGTTAAGGCTCATCG
Found at i:205589375 original size:42 final size:42
Alignment explanation
Indices: 205589328--205589651 Score: 125
Period size: 42 Copynumber: 7.5 Consensus size: 42
205589318 CTTTAGCCTA
* *
205589328 CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTCAATCTG
1 CTCCACTACTGCTTAGGGAGATAAGATGCTGGCTTCAATCTG
* * * * **
205589370 CTCCACTACTGGTTAGGGAGGA-AAGATTCACCGTCTTTGATCTG
1 CTCCACTACTGCTTAGGGA-GATAAGA-T-GCTGGCTTCAATCTG
* ** * * ** *
205589414 TTCCACTACAACTTCAGGGAGACAAGAT-CTGGAATCTTTAGCCTA
1 CTCCACTACTGCTT-AGGGAGATAAGATGCTGG---CTTCAATCTG
* *
205589459 CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTCAATCTG
1 CTCCACTACTGCTTAGGGAGATAAGATGCTGGCTTCAATCTG
* * * ** * * * * *
205589501 TTCCACTACTGGTTAAGGAGGCAAGATTCACCGTCTTCGATCTA
1 CTCCACTACTGCTTAGGGAGATAAGA-T-GCTGGCTTCAATCTG
* ** * * * ** *
205589545 TTCCACTACAACTTCAGGGAGACAAGAT-CTGCAATCTTTAGCCTA
1 CTCCACTACTGCTT-AGGGAGATAAGATGCTG---GCTTCAATCTG
* * *
205589590 CTCCACTACTACTTAGGGAGATAGGATGGC-GGCTTCAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGAT-GCTGGCTTCAATCTG
*
205589632 CTCCACTACTGGTTAGGGAG
1 CTCCACTACTGCTTAGGGAG
205589652 GCAAGATTCG
Statistics
Matches: 205, Mismatches: 60, Indels: 34
0.69 0.20 0.11
Matches are distributed among these distances:
42 76 0.37
43 4 0.02
44 65 0.32
45 59 0.29
46 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (42 bp):
CTCCACTACTGCTTAGGGAGATAAGATGCTGGCTTCAATCTG
Found at i:205589595 original size:45 final size:43
Alignment explanation
Indices: 205589546--205589741 Score: 126
Period size: 45 Copynumber: 4.5 Consensus size: 43
205589536 TTCGATCTAT
205589546 TCCACTACAACTTCAGGGAGACAAGATCTGCAATCTTTAGCCTAC
1 TCCACTACAACTT-AGGGAGACAAGAT-TGCAATCTTTAGCCTAC
* * * * ** * **
205589591 TCCACTACTACTTAGGGAGATAGGATGGC-GGCTTCAATCTAC
1 TCCACTACAACTTAGGGAGACAAGATTGCAATCTTTAGCCTAC
*** * * * * **
205589633 TCCACTACTGGTTAGGGAGGCAAGATTCGCCATC-TTCGAACTGT
1 TCCACTACAACTTAGGGAGACAAGATT-GCAATCTTTAG-CCTAC
* *
205589677 TCCACTGCAACTTCAGGAAGACAAGATCTGCAATCTTTAGCCTAC
1 TCCACTACAACTT-AGGGAGACAAGAT-TGCAATCTTTAGCCTAC
**
205589722 TCCACTACTGCTTAGGGAGA
1 TCCACTACAACTTAGGGAGA
205589742 TAGGATAGTG
Statistics
Matches: 107, Mismatches: 38, Indels: 13
0.68 0.24 0.08
Matches are distributed among these distances:
42 29 0.27
43 5 0.05
44 29 0.27
45 40 0.37
46 4 0.04
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (43 bp):
TCCACTACAACTTAGGGAGACAAGATTGCAATCTTTAGCCTAC
Found at i:205589840 original size:131 final size:131
Alignment explanation
Indices: 205589171--205589832 Score: 1015
Period size: 131 Copynumber: 5.1 Consensus size: 131
205589161 TACTATTTAG
* * * *
205589171 GGAGATAAGATCTGCAA--TTTGGCCTACTCCACTACTACTTAGGGAGATAGGATGTTGGCTTCA
1 GGAGACAAGATCTGCAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTCA
* * *
205589234 ATCTACTCCACTACTGGTTAAGGAGGCAAGATTCGCCATGTTCGATCTGTTCCACTGCAACTTCA
66 ATCTGCTCCACTACTGGTTAAGGAGGCAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCA
205589299 A
131 A
*
205589300 GGAGACAAGATCTGTAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTCA
1 GGAGACAAGATCTGCAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTCA
* * * * *
205589365 ATCTGCTCCACTACTGGTTAGGGAGGAAAGATTCACCGTCTTTGATCTGTTCCACTACAACTTCA
66 ATCTGCTCCACTACTGGTTAAGGAGGCAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCA
*
205589430 G
131 A
*
205589431 GGAGACAAGATCTGGAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTCA
1 GGAGACAAGATCTGCAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTCA
* * * *
205589496 ATCTGTTCCACTACTGGTTAAGGAGGCAAGATTCACCGTCTTCGATCTATTCCACTACAACTTCA
66 ATCTGCTCCACTACTGGTTAAGGAGGCAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCA
*
205589561 G
131 A
* *
205589562 GGAGACAAGATCTGCAATCTTTAGCCTACTCCACTACTACTTAGGGAGATAGGATGGCGGCTTCA
1 GGAGACAAGATCTGCAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTCA
* * * *
205589627 ATCTACTCCACTACTGGTTAGGGAGGCAAGATTCGCCATCTTCGAACTGTTCCACTGCAACTTC-
66 ATCTGCTCCACTACTGGTTAAGGAGGCAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCA
205589691 A
131 A
* *
205589692 GGAAGACAAGATCTGCAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATAGTGGCTTT
1 GG-AGACAAGATCTGCAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTC
* * *
205589757 AATCTGCTCTACTACTGGTTAAGGAGGCAAGATTCGTCGTCTTCGATGTGTTCCACTGCAACTTC
65 AATCTGCTCCACTACTGGTTAAGGAGGCAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTC
205589822 AA
130 AA
205589824 GGAGACAAG
1 GGAGACAAG
205589833 GTTTGCAAAT
Statistics
Matches: 486, Mismatches: 43, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
129 15 0.03
130 2 0.00
131 466 0.96
132 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (131 bp):
GGAGACAAGATCTGCAATCTTTAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTCA
ATCTGCTCCACTACTGGTTAAGGAGGCAAGATTCGCCGTCTTCGATCTGTTCCACTGCAACTTCA
A
Found at i:205590008 original size:64 final size:64
Alignment explanation
Indices: 205589904--205590031 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
205589894 TCATGTATCT
*
205589904 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAAGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
* * *
205589968 ATGCTTATGTCAAATGATTAAGATGCTATGATCGAGATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAAGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
205590032 TTATGAATGA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAAGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:205591146 original size:15 final size:14
Alignment explanation
Indices: 205591128--205591162 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
205591118 CTTTTCTTTC
*
205591128 TTTTTATTTTTTAT
1 TTTTTATTTTTTAA
205591142 TTTTTATTTTTTTAA
1 TTTTTA-TTTTTTAA
205591157 TTTTTA
1 TTTTTA
205591163 GGTTTCAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTATTTTTTAA
Found at i:205591162 original size:7 final size:7
Alignment explanation
Indices: 205591128--205591153 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
205591118 CTTTTCTTTC
205591128 TTTTTAT
1 TTTTTAT
205591135 TTTTTAT
1 TTTTTAT
205591142 TTTTTAT
1 TTTTTAT
205591149 TTTTT
1 TTTTT
205591154 TAATTTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:205598035 original size:25 final size:25
Alignment explanation
Indices: 205598006--205598053 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
205597996 TTATAATATG
* * *
205598006 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
205598031 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
205598054 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:205598122 original size:20 final size:20
Alignment explanation
Indices: 205598097--205598156 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
205598087 TAAATATGGT
205598097 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* * *
205598117 ATGTATGATACGTACATGAT
1 ATGTATGATATGCACATGAA
205598137 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
205598157 GTAATCATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:205598236 original size:23 final size:24
Alignment explanation
Indices: 205598206--205598300 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
205598196 GAGGAAGTGA
205598206 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
205598229 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
205598253 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
205598277 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
205598301 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:205598274 original size:47 final size:49
Alignment explanation
Indices: 205598207--205598300 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
205598197 AGGAAGTGAA
*
205598207 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
205598254 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
205598301 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:205598483 original size:31 final size:31
Alignment explanation
Indices: 205598445--205598561 Score: 144
Period size: 31 Copynumber: 3.5 Consensus size: 31
205598435 TTCATTGAAA
205598445 TAATATGAAACATGAAAAGGCTTCGGCCCAG
1 TAATATGAAACATGAAAAGGCTTCGGCCCAG
*
205598476 TAATATGAAATATGAAAAGGCTTCGGCCCAG
1 TAATATGAAACATGAAAAGGCTTCGGCCCAG
205598507 TATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAG
1 -----T--AATATGAAACATGAAAAGGCTTCGGCCCAG
* *
205598545 TATTATGAAATATGAAA
1 TAATATGAAACATGAAA
205598562 TACGAAAAGG
Statistics
Matches: 75, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
31 44 0.59
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.24
Consensus pattern (31 bp):
TAATATGAAACATGAAAAGGCTTCGGCCCAG
Found at i:205598519 original size:38 final size:38
Alignment explanation
Indices: 205598477--205598584 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
205598467 TCGGCCCAGT
205598477 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
205598515 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
* *
205598553 AATATGAAATACGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
205598585 GCATGATTGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 52 0.80
39 13 0.20
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:205609186 original size:40 final size:40
Alignment explanation
Indices: 205609078--205609247 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
205609068 CGGGATTTAA
* * * * *
205609078 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
205609118 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
205609158 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
205609198 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
205609238 CCGGATATAT
1 CCGGATATAT
205609248 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:205612985 original size:47 final size:46
Alignment explanation
Indices: 205612864--205613026 Score: 143
Period size: 47 Copynumber: 3.5 Consensus size: 46
205612854 AGGAATTTAC
* * *
205612864 GATTAAGGATACCAAGTAAGACCACGTCAAGACATGGCATTGGTAAG
1 GATTAAGGAT-CCATGTAAGACCACGTCAAGACATGGCATCGGCAAG
* * **
205612911 GA--AAGGATCCGTGTAAGACCATGTCAAGACATGGCATCGGCATT
1 GATTAAGGATCCATGTAAGACCACGTCAAGACATGGCATCGGCAAG
* ** * *
205612955 GATTAAGGACTCCATGTAAGACCACATCAAGATGTGGCATTGGCACTAA
1 GATTAAGGA-TCCATGTAAGACCACGTCAAGACATGGCATCGGCA--AG
*
205613004 GA-CAAGGATACCATGTAAGACCA
1 GATTAAGGAT-CCATGTAAGACCA
205613027 TGTTTGGAAC
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
44 31 0.33
45 6 0.06
46 5 0.05
47 32 0.34
48 18 0.19
49 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (46 bp):
GATTAAGGATCCATGTAAGACCACGTCAAGACATGGCATCGGCAAG
Found at i:205613060 original size:47 final size:47
Alignment explanation
Indices: 205613001--205613122 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
205612991 GCATTGGCAC
205613001 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
205613048 TAAGACAAGGATACCATGTAAAACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
205613095 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
205613123 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:205613225 original size:55 final size:53
Alignment explanation
Indices: 205613101--205613297 Score: 207
Period size: 54 Copynumber: 3.7 Consensus size: 53
205613091 TTGGTAAGAT
* * * * *
205613101 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTC-ATAAGGC
* * * * *
205613155 AAGGAAATCATGTAAGCCCATGTCTAGATATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAGGC
* * * *
205613210 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGC
* *
205613263 AAGGATACCACGTAAGACCATGTCAAGAGATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
205613298 ATGGTAAGTT
Statistics
Matches: 118, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.27
54 39 0.33
55 39 0.33
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGC
Found at i:205613309 original size:53 final size:54
Alignment explanation
Indices: 205613101--205613308 Score: 215
Period size: 53 Copynumber: 3.9 Consensus size: 54
205613091 TTGGTAAGAT
* *
205613101 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * * ** *
205613155 AAGGAAATCATGTAAGCCCATGTCTAGATATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC
* * *
205613210 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * *
205613263 AAGGATACCACGTAAGACCATGTCAAGAG-ATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAG-GCATGGCATTGATAAGTTC
205613309 AAAAAGGAAA
Statistics
Matches: 128, Mismatches: 22, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 40 0.31
55 39 0.30
56 4 0.03
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
Found at i:205616472 original size:26 final size:26
Alignment explanation
Indices: 205616443--205616550 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
205616433 TGGTACAAAT
205616443 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
205616469 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
205616495 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
205616521 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
205616547 TGAT
1 TGAT
205616551 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:205618187 original size:27 final size:27
Alignment explanation
Indices: 205618147--205618233 Score: 115
Period size: 27 Copynumber: 3.2 Consensus size: 27
205618137 AGGAAGCGTC
*
205618147 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
205618174 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
205618201 ATGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
205618228 CTGGTG
1 CTGGTG
205618234 ACTTCGTCAC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
26 8 0.15
27 43 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:205623492 original size:26 final size:26
Alignment explanation
Indices: 205623463--205623544 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
205623453 TGGTACAAAT
205623463 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
205623489 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
205623515 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
205623541 TGAT
1 TGAT
205623545 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:205625173 original size:27 final size:27
Alignment explanation
Indices: 205625133--205625273 Score: 166
Period size: 27 Copynumber: 5.2 Consensus size: 27
205625123 AGGAAGCGTC
*
205625133 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
205625160 CTGGTGGCTCTGCCA-TATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
205625186 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
205625214 CTGGTGGCTCTGCCAC-ATATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
*
205625241 CTGGTGGCTCTGTCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
205625268 CTGGTG
1 CTGGTG
205625274 ACTTCGTCAC
Statistics
Matches: 99, Mismatches: 6, Indels: 18
0.80 0.05 0.15
Matches are distributed among these distances:
26 11 0.11
27 83 0.84
28 5 0.05
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:205625212 original size:54 final size:54
Alignment explanation
Indices: 205625130--205625273 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
205625120 TGGAGGAAGC
*
205625130 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
205625184 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * *
205625238 ATTCTGGTGGCTCTGTCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
205625274 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 6 0.07
54 78 0.93
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:205625282 original size:27 final size:27
Alignment explanation
Indices: 205625133--205625291 Score: 148
Period size: 27 Copynumber: 5.9 Consensus size: 27
205625123 AGGAAGCGTC
* *
205625133 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGTCACAA-TATCTGTAT
* * *
205625160 CTGGTGGCTCTGCCATATATATCTGT-C
1 CTGGTGGCTCTGTCACA-ATATCTGTAT
* *
205625187 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGTCACAA-TATCTGTAT
* *
205625214 CTGGTGGCTCTGCCACATATATCTAT-T
1 CTGGTGGCTCTGTCACA-ATATCTGTAT
205625241 CTGGTGGCTCTGTCACAATATCTGTAT
1 CTGGTGGCTCTGTCACAATATCTGTAT
*
205625268 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GTCACAATATCTG
205625292 GCAGCCTCGC
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 9 0.08
27 102 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGTCACAATATCTGTAT
Found at i:205625285 original size:81 final size:80
Alignment explanation
Indices: 205625133--205625291 Score: 191
Period size: 81 Copynumber: 2.0 Consensus size: 80
205625123 AGGAAGCGTC
* *
205625133 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
205625198 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
205625214 CTGGTGGCTCTGCCAC-ATATATCT-ATTCTGGTGGCTCTGTCACA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGA-TCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGAC
*
205625276 T-TCGTCACAATATCTG
63 TAT-GCCACAATATCTG
205625292 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
80 18 0.26
81 50 0.74
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:205638164 original size:8 final size:8
Alignment explanation
Indices: 205638148--205638183 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
205638138 GACATCCCAA
205638148 TTTTCGGC
1 TTTTCGGC
*
205638156 TTTTTGGC
1 TTTTCGGC
205638164 TTTTCGGC
1 TTTTCGGC
*
205638172 TTTTTGGC
1 TTTTCGGC
205638180 TTTT
1 TTTT
205638184 GCTATTACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.00, C:0.17, G:0.22, T:0.61
Consensus pattern (8 bp):
TTTTCGGC
Found at i:205638169 original size:16 final size:16
Alignment explanation
Indices: 205638148--205638183 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
205638138 GACATCCCAA
205638148 TTTTCGGCTTTTTGGC
1 TTTTCGGCTTTTTGGC
205638164 TTTTCGGCTTTTTGGC
1 TTTTCGGCTTTTTGGC
205638180 TTTT
1 TTTT
205638184 GCTATTACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.00, C:0.17, G:0.22, T:0.61
Consensus pattern (16 bp):
TTTTCGGCTTTTTGGC
Found at i:205638876 original size:15 final size:16
Alignment explanation
Indices: 205638856--205638885 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
205638846 GAAAATTACC
205638856 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
205638871 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
205638886 TGGAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:205642926 original size:15 final size:16
Alignment explanation
Indices: 205642908--205642941 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
205642898 TTCTTCTCCC
205642908 TTTCTTTC-TTTCTTT
1 TTTCTTTCTTTTCTTT
205642923 TTTCTTTCTTTTCTTT
1 TTTCTTTCTTTTCTTT
205642939 TTT
1 TTT
205642942 TAATTTAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTCTTTCTTTTCTTT
Found at i:205642984 original size:3 final size:3
Alignment explanation
Indices: 205642978--205643022 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
205642968 TTTTTTTCCT
*
205642978 TTA TTA TTA TTC TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
205643023 ACTTTATATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:205648256 original size:29 final size:29
Alignment explanation
Indices: 205648214--205648271 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
205648204 TTGCTTGCAA
205648214 AGTATGCAGAGATTTTCTACTCAGAATAT
1 AGTATGCAGAGATTTTCTACTCAGAATAT
205648243 AGTATGCAGAGATTTTCTACTCAGAATAT
1 AGTATGCAGAGATTTTCTACTCAGAATAT
205648272 TTGTAACCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (29 bp):
AGTATGCAGAGATTTTCTACTCAGAATAT
Found at i:205650463 original size:23 final size:22
Alignment explanation
Indices: 205650437--205650527 Score: 62
Period size: 23 Copynumber: 4.0 Consensus size: 22
205650427 GGACTCACCG
205650437 CAGCTTGTAAGAGCTTACTATTT
1 CAGCTT-TAAGAGCTTACTATTT
*
205650460 CAGCTCATTGA-AGCTTACTGA-TT
1 CAGCT--TTAAGAGCTTACT-ATTT
*
205650483 CAGCTTAAAAGAGCTTACTATTT
1 CAGCTT-TAAGAGCTTACTATTT
** *
205650506 -AGCTCAATAGAGCTTACCATTT
1 CAGCTTTA-AGAGCTTACTATTT
205650528 TACCATTTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 15
0.74 0.07 0.20
Matches are distributed among these distances:
21 3 0.05
22 19 0.34
23 30 0.54
24 3 0.05
25 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (22 bp):
CAGCTTTAAGAGCTTACTATTT
Found at i:205650517 original size:22 final size:22
Alignment explanation
Indices: 205650446--205650527 Score: 85
Period size: 22 Copynumber: 3.6 Consensus size: 22
205650436 GCAGCTTGTA
205650446 AGAGCTTACTATTTCAGCTC-AT
1 AGAGCTTACTATTT-AGCTCAAT
* * * *
205650468 TGAAGCTTACTGATTCAGCTTAAA
1 AG-AGCTTACT-ATTTAGCTCAAT
205650492 AGAGCTTACTATTTAGCTCAAT
1 AGAGCTTACTATTTAGCTCAAT
*
205650514 AGAGCTTACCATTT
1 AGAGCTTACTATTT
205650528 TACCATTTTT
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
22 23 0.48
23 20 0.42
24 5 0.10
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (22 bp):
AGAGCTTACTATTTAGCTCAAT
Found at i:205654523 original size:21 final size:22
Alignment explanation
Indices: 205654471--205654523 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
205654461 AAATAAAATC
*
205654471 CATGTA-CAAATATCATCATCT
1 CATGTATCATATATCATCATCT
* *
205654492 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATCATCT
205654514 CATGTATCAT
1 CATGTATCAT
205654524 CATTTACTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATCATCT
Found at i:205657599 original size:15 final size:14
Alignment explanation
Indices: 205657578--205657605 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
205657568 CAACTTGGGA
205657578 AAATTTTTCCTAAG
1 AAATTTTTCCTAAG
205657592 AAATTTTTCCTAAG
1 AAATTTTTCCTAAG
205657606 TGTTGTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (14 bp):
AAATTTTTCCTAAG
Found at i:205658926 original size:44 final size:43
Alignment explanation
Indices: 205658856--205658939 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 43
205658846 GATTCTGATA
* *
205658856 TGAGATTTTGTGTAAGACCACATCTGGGACATTAGCATCGATT
1 TGAGATTTCGTGTAAGACCACATCTGGGACATCAGCATCGATT
* **
205658899 TGAGATTTACGTGTAAGATCATGTCTGGGACATCAGCATCG
1 TGAGATTT-CGTGTAAGACCACATCTGGGACATCAGCATCG
205658940 TATGTGATAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 8 0.23
44 27 0.77
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TGAGATTTCGTGTAAGACCACATCTGGGACATCAGCATCGATT
Found at i:205660618 original size:29 final size:28
Alignment explanation
Indices: 205660586--205660688 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 28
205660576 GTGACGAGAT
* *
205660586 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* *
205660615 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACT-AGTGTGCGAGCTTGGAATATA
* **
205660644 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTA-GTGTGCGAGCTTGGAAT-ATA
205660673 TGGCACTAAGTGTGCG
1 TGGCACT-AGTGTGCG
205660689 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
28 4 0.07
29 56 0.92
30 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.29
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTTGGAATATA
Found at i:205672895 original size:40 final size:40
Alignment explanation
Indices: 205672836--205673004 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
205672826 CGGGACTTTA
* * *
205672836 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
205672876 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
205672916 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
205672956 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
205672996 CCCGGATAT
1 CCCGGATAT
205673005 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:205679112 original size:13 final size:14
Alignment explanation
Indices: 205679066--205679121 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 14
205679056 ATGCCGAATT
205679066 CTTCTTTCTCTTCTC
1 CTTCTTT-TCTTCTC
* *
205679081 C-TCTCTTCTTCTAT
1 CTTCTTTTCTTCT-C
*
205679095 TTTCTTTT-TTCTC
1 CTTCTTTTCTTCTC
205679108 CTTCTTTTCTTCTC
1 CTTCTTTTCTTCTC
205679122 TAGCCGAAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
13 13 0.41
14 13 0.41
15 6 0.19
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.64
Consensus pattern (14 bp):
CTTCTTTTCTTCTC
Found at i:205681883 original size:42 final size:43
Alignment explanation
Indices: 205681787--205681948 Score: 134
Period size: 43 Copynumber: 3.8 Consensus size: 43
205681777 ATCAAGATAT
* * * *
205681787 GATTACATGTAAGACCATGTCTGGAACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAATCA
*
205681830 GATTACGTGTAA-ACCATGTCTGGGACATTGGCATCGTTAATCA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAATCA
* * * * * **
205681873 -ATTTCATGTAAGACCTTGTCTAGGATAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTA-ATCA
* * * *
205681915 GATAACATGCAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
205681949 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 19, Indels: 9
0.77 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 39 0.41
43 56 0.58
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAATCA
Found at i:205685418 original size:27 final size:27
Alignment explanation
Indices: 205685378--205685569 Score: 187
Period size: 27 Copynumber: 7.2 Consensus size: 27
205685368 GTCGTTAAGG
* * *
205685378 CCCC-GATTTATAAAACTACCAAAATA
1 CCCCTGATTTGTAAAATTACCGAAATA
205685404 CCCCTGATTTGTAAAATTACC-AAATA
1 CCCCTGATTTGTAAAATTACCGAAATA
* * **
205685430 CCCCTAATTTGTGAAATTATTGAAATA
1 CCCCTGATTTGTAAAATTACCGAAATA
*
205685457 GGCCC-GATTTGTAAAATTACCGAAATA
1 -CCCCTGATTTGTAAAATTACCGAAATA
* * *
205685484 CCCTTAATTTGTAAAATTATCGAAATA
1 CCCCTGATTTGTAAAATTACCGAAATA
* * *
205685511 CCCTTAATTTGT-GAATTACCGAAATA
1 CCCCTGATTTGTAAAATTACCGAAATA
* *
205685537 CCCCT-AGTTTGTAAAATGACCGTAATA
1 CCCCTGA-TTTGTAAAATTACCGAAATA
205685564 CCCCTG
1 CCCCTG
205685570 TAGGGTAAAA
Statistics
Matches: 138, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
25 1 0.01
26 49 0.36
27 85 0.62
28 3 0.02
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (27 bp):
CCCCTGATTTGTAAAATTACCGAAATA
Found at i:205685528 original size:53 final size:53
Alignment explanation
Indices: 205685399--205685553 Score: 199
Period size: 53 Copynumber: 2.9 Consensus size: 53
205685389 AAAACTACCA
* *
205685399 AAATACCCCTGATTTGTAAAATTACC-AAATACCCCTAATTTGTGAAATTATTG
1 AAATA-CCCTGATTTGTAAAATTACCGAAATACCCCTAATTTGTAAAATTATCG
*
205685452 AAATAGGCCC-GATTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTATCG
1 AAATA--CCCTGATTTGTAAAATTACCGAAATACCCCTAATTTGTAAAATTATCG
* * *
205685506 AAATACCCTTAATTTGT-GAATTACCGAAATACCCCTAGTTTGTAAAAT
1 AAATACCC-TGATTTGTAAAATTACCGAAATACCCCTAATTTGTAAAAT
205685554 GACCGTAATA
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
52 3 0.03
53 49 0.54
54 38 0.42
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (53 bp):
AAATACCCTGATTTGTAAAATTACCGAAATACCCCTAATTTGTAAAATTATCG
Found at i:205685528 original size:80 final size:79
Alignment explanation
Indices: 205685378--205685568 Score: 231
Period size: 80 Copynumber: 2.4 Consensus size: 79
205685368 GTCGTTAAGG
* * * *
205685378 CCCCGATTTATAAAACTACCAAAATACCCCTGATTTGTAAAATTACCAAATACCCCTAATTTGTG
1 CCCCGATTTGTAAAATTACCGAAATACCCCTAATTTGTAAAATTACCAAATACCCCTAATTTGTG
**
205685443 AAATTATTGAAATA
66 AAATTACCGAAATA
* * * *
205685457 GGCCCGATTTGTAAAATTACCGAAATACCCTTAATTTGTAAAATTATCGAAATACCCTTAATTTG
1 -CCCCGATTTGTAAAATTACCGAAATACCCCTAATTTGTAAAATTA-CCAAATACCCCTAATTTG
205685522 TG-AATTACCGAAATA
64 TGAAATTACCGAAATA
* * *
205685537 CCCCTAGTTTGTAAAATGACCGTAATACCCCT
1 CCCCGA-TTTGTAAAATTACCGAAATACCCCT
205685569 GTAGGGTAAA
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
79 4 0.04
80 72 0.77
81 18 0.19
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.31
Consensus pattern (79 bp):
CCCCGATTTGTAAAATTACCGAAATACCCCTAATTTGTAAAATTACCAAATACCCCTAATTTGTG
AAATTACCGAAATA
Found at i:205685577 original size:27 final size:27
Alignment explanation
Indices: 205685547--205685606 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
205685537 CCCCTAGTTT
205685547 GTAAAATGACCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
205685574 GTAAAATGACCGTAATACCCTTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
205685601 GTAAAA
1 GTAAAA
205685607 AGACGATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:205685828 original size:26 final size:27
Alignment explanation
Indices: 205685751--205685813 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
205685741 GGAAGTACTC
* * *
205685751 TACTGGTGACTATGTCAC-ATTCACTGT
1 TACTGGTGGCTATGCCACAATT-ACTGA
205685778 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACAATTACTGA
205685805 TACTGGTGG
1 TACTGGTGG
205685814 TTTGCCATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 29 0.91
28 3 0.09
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTGA
Found at i:205686025 original size:28 final size:28
Alignment explanation
Indices: 205685994--205686047 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
205685984 GTACTGATAT
* * * *
205685994 TGTATTGGGCTTAGGCCCACACTGTTAC
1 TGTATAGGGCTAAAGCCCAAACTGTTAC
205686022 TGTATAGGGCTAAAGCCCAAACTGTT
1 TGTATAGGGCTAAAGCCCAAACTGTT
205686048 CTATTACTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (28 bp):
TGTATAGGGCTAAAGCCCAAACTGTTAC
Found at i:205686477 original size:17 final size:19
Alignment explanation
Indices: 205686435--205686478 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
205686425 ATGAAATTTT
*
205686435 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
205686454 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
205686472 AA-TATTA
1 AATTATTA
205686479 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:205690707 original size:17 final size:19
Alignment explanation
Indices: 205690665--205690708 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
205690655 ATGAAATTTT
*
205690665 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
205690684 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
205690702 AA-TATTA
1 AATTATTA
205690709 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:205694945 original size:17 final size:19
Alignment explanation
Indices: 205694903--205694946 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
205694893 ATGAAATTTT
*
205694903 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
205694922 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
205694940 AA-TATTA
1 AATTATTA
205694947 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:205700160 original size:46 final size:46
Alignment explanation
Indices: 205700110--205700285 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
205700100 TATTTGGGCA
205700110 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
205700156 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
205700203 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
205700249 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
205700286 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:205700265 original size:93 final size:93
Alignment explanation
Indices: 205700106--205700277 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
205700096 TGGATATTTG
* *
205700106 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205700171 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
205700199 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205700264 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
205700278 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:205703258 original size:15 final size:15
Alignment explanation
Indices: 205703238--205703306 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
205703228 GTATCTTGGG
205703238 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
205703253 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
205703268 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
205703283 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
205703298 TTTCTTTAT
1 TTTCTTTAT
205703307 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:205703307 original size:30 final size:30
Alignment explanation
Indices: 205703229--205703316 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
205703219 CATAGTATCG
* * * *
205703229 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
205703259 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
205703289 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
205703317 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:205705750 original size:46 final size:46
Alignment explanation
Indices: 205705700--205705875 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
205705690 TATTTGGGCA
205705700 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
205705746 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
205705793 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
205705839 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
205705876 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:205705855 original size:93 final size:93
Alignment explanation
Indices: 205705696--205705867 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
205705686 TGGATATTTG
* *
205705696 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205705761 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
205705789 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205705854 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
205705868 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:205708847 original size:15 final size:15
Alignment explanation
Indices: 205708827--205708895 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
205708817 GTATCTTGGG
205708827 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
205708842 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
205708857 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
205708872 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
205708887 TTTCTTTAT
1 TTTCTTTAT
205708896 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:205708896 original size:30 final size:30
Alignment explanation
Indices: 205708818--205708905 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
205708808 CATAGTATCG
* * * *
205708818 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
205708848 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
205708878 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
205708906 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:205711343 original size:46 final size:46
Alignment explanation
Indices: 205711290--205711465 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
205711280 TATTTGGGCA
205711290 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
205711336 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
205711383 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
205711429 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
205711466 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:205711445 original size:93 final size:93
Alignment explanation
Indices: 205711286--205711457 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
205711276 GGGATATTTG
* *
205711286 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205711351 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
205711379 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205711444 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
205711458 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:205714437 original size:15 final size:15
Alignment explanation
Indices: 205714417--205714485 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
205714407 GTATCTTGGG
205714417 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
205714432 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
205714447 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
205714462 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
205714477 TTTCTTTAT
1 TTTCTTTAT
205714486 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:205714486 original size:30 final size:30
Alignment explanation
Indices: 205714408--205714495 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
205714398 CATAGTATCG
* * * *
205714408 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
205714438 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
205714468 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
205714496 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:205716934 original size:46 final size:46
Alignment explanation
Indices: 205716881--205717056 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
205716871 TATTTGGGCA
205716881 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
205716927 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
205716974 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
205717020 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
205717057 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:205717036 original size:93 final size:93
Alignment explanation
Indices: 205716877--205717048 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
205716867 GGGATATTTG
* *
205716877 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205716942 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
205716970 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205717035 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
205717049 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:205720026 original size:15 final size:15
Alignment explanation
Indices: 205720006--205720074 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
205719996 GTATCTTGGG
205720006 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
205720021 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
205720036 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
205720051 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
205720066 TTTCTTTAT
1 TTTCTTTAT
205720075 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:205720075 original size:30 final size:30
Alignment explanation
Indices: 205719997--205720084 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
205719987 CATAGTATCG
* * * *
205719997 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
205720027 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
205720057 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
205720085 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:205722517 original size:46 final size:46
Alignment explanation
Indices: 205722467--205722642 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
205722457 TATTTGGGCA
205722467 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
205722513 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
205722560 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
205722606 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
205722643 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:205722622 original size:93 final size:93
Alignment explanation
Indices: 205722463--205722634 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
205722453 TGGATATTTG
* *
205722463 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205722528 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
205722556 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205722621 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
205722635 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:205725616 original size:15 final size:15
Alignment explanation
Indices: 205725596--205725664 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
205725586 GTATCTTGGG
205725596 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
205725611 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
205725626 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
205725641 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
205725656 TTTCTTTAT
1 TTTCTTTAT
205725665 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:205725665 original size:30 final size:30
Alignment explanation
Indices: 205725587--205725674 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
205725577 CATAGTATCG
* * * *
205725587 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
205725617 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
205725647 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
205725675 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:205728112 original size:46 final size:46
Alignment explanation
Indices: 205728059--205728234 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
205728049 TATTTGGGCA
205728059 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
205728105 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
205728152 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
205728198 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
205728235 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:205728214 original size:93 final size:93
Alignment explanation
Indices: 205728055--205728226 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
205728045 GGGATATTTG
* *
205728055 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205728120 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
205728148 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
205728213 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
205728227 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:205737613 original size:39 final size:39
Alignment explanation
Indices: 205737570--205737713 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
205737560 GAATGTTCGA
*
205737570 GTGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
205737609 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
205737648 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
205737687 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
205737714 CTTTGTGCGG
Statistics
Matches: 96, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.91
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:205737660 original size:78 final size:79
Alignment explanation
Indices: 205737571--205737741 Score: 263
Period size: 78 Copynumber: 2.2 Consensus size: 79
205737561 AATGTTCGAG
205737571 TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
205737635 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
205737649 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
205737714 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** *
205737728 CCATAACCGGGCTA
1 TGATATCCGGGCTA
205737742 TGTCCTGAAG
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 53 0.63
79 31 0.37
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:205742155 original size:26 final size:26
Alignment explanation
Indices: 205742124--205742231 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
205742114 TGAAATGCCC
*
205742124 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
205742150 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
205742176 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
205742202 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
205742228 ATCA
1 ATCA
205742232 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:205750396 original size:143 final size:141
Alignment explanation
Indices: 205750188--205750482 Score: 554
Period size: 143 Copynumber: 2.1 Consensus size: 141
205750178 TGAGTTAAAT
*
205750188 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
205750253 GAGTGAGGTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGGTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
205750318 GTGTGCATGAGTA
129 GTGTGCATGAGTA
205750331 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
*
205750396 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGGTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
205750461 GTGCATGAGTA
131 GTGCATGAGTA
205750472 TTCGGCCATGC
1 TTCGGCCATGC
205750483 TATAGAATTT
Statistics
Matches: 150, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 121 0.81
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGGTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:205751159 original size:29 final size:29
Alignment explanation
Indices: 205751126--205751315 Score: 157
Period size: 29 Copynumber: 6.6 Consensus size: 29
205751116 GTGACGAGAT
205751126 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
205751155 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
205751184 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * ** *
205751213 CGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
205751242 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** * * * *
205751271 TGGCACTGTGTGTGCGGGCT-TAAATTGTG
1 TGGCACTAAGTGTGCGTGCTGGAAA-TATA
205751300 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
205751316 AAATCGAGTG
Statistics
Matches: 136, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
28 2 0.01
29 134 0.99
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:205758377 original size:139 final size:138
Alignment explanation
Indices: 205758091--205758378 Score: 494
Period size: 139 Copynumber: 2.1 Consensus size: 138
205758081 TGAGTTAAAT
*
205758091 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTATGTTGTTGTGATGAAGCATGGAGATGA
1 TTCGGCCATGCA-GTTGTCTTCCTTGGTGAGTGTTTTATGTTGTTGTGATGAAGCATGGAGATGA
205758156 GTGATTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGTGTG
65 GTGATTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA-GTGTGTGTG
205758221 TGCATGAGTA
129 TGCATGAGTA
205758231 TTC--CCATGC-GTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGATG
1 TTCGGCCATGCAGTTGTCTTCCTTGGTGAGTGTTTT-ATGTTGTTGTGATG-AAGCATGGAGATG
205758293 AGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA-TGTGTGT
64 AGTGA-TTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTAGTGTGTGT
205758357 GTGCATGAGTA
128 GTGCATGAGTA
205758368 TTCGGCCATGC
1 TTCGGCCATGC
205758379 TATAGAATTT
Statistics
Matches: 142, Mismatches: 1, Indels: 11
0.92 0.01 0.07
Matches are distributed among these distances:
136 23 0.16
137 35 0.25
138 24 0.17
139 57 0.40
140 3 0.02
ACGTcount: A:0.21, C:0.11, G:0.28, T:0.40
Consensus pattern (138 bp):
TTCGGCCATGCAGTTGTCTTCCTTGGTGAGTGTTTTATGTTGTTGTGATGAAGCATGGAGATGAG
TGATTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTAGTGTGTGTGTG
CATGAGTA
Found at i:205759048 original size:29 final size:29
Alignment explanation
Indices: 205759016--205759136 Score: 161
Period size: 29 Copynumber: 4.2 Consensus size: 29
205759006 TGACGAGATT
* * *
205759016 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
* * *
205759045 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
205759074 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
* * *
205759103 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
205759132 GGCAC
1 GGCAC
205759137 GGTGTGTGCG
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 84 1.00
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAC
Found at i:205759142 original size:29 final size:29
Alignment explanation
Indices: 205759082--205759150 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 29
205759072 AAGGCACTAA
* *
205759082 GTGTGCATGCTGGAAAAATACGACACTAT
1 GTGTGCAAGCTGGAAAAATACGACACGAT
* *
205759111 GTGTGCAAGCTGGAAAAATACGGCACGGT
1 GTGTGCAAGCTGGAAAAATACGACACGAT
*
205759140 GTGTGCGAGCT
1 GTGTGCAAGCT
205759151 CGAAGGGTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (29 bp):
GTGTGCAAGCTGGAAAAATACGACACGAT
Found at i:205762865 original size:50 final size:50
Alignment explanation
Indices: 205762785--205762894 Score: 150
Period size: 50 Copynumber: 2.2 Consensus size: 50
205762775 TTCAACGAGT
* * *
205762785 ATGAAAAGGAAAGGAACGGTAAGTGTTCAAATGAACTATATAATGCATTA
1 ATGAAAAGGAAAGGAACGGTAAGTGGTCAAATGAAATATATAATACATTA
* *
205762835 ATGAAAAGGAAA-GAAGCGGTAAGTGGTCAAATGAAATATATCATATATTA
1 ATGAAAAGGAAAGGAA-CGGTAAGTGGTCAAATGAAATATATAATACATTA
*
205762885 ATGTAAAGGA
1 ATGAAAAGGA
205762895 TTGAAATGGT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
49 3 0.06
50 50 0.94
ACGTcount: A:0.47, C:0.06, G:0.23, T:0.24
Consensus pattern (50 bp):
ATGAAAAGGAAAGGAACGGTAAGTGGTCAAATGAAATATATAATACATTA
Found at i:205763009 original size:23 final size:23
Alignment explanation
Indices: 205762983--205763037 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
205762973 TTGGCTTATC
**
205762983 ATGTGGTTGATCCCAAAAGAGTT
1 ATGTGGTAAATCCCAAAAGAGTT
*
205763006 ATGT-GTAAATGCCAAAAGAGTT
1 ATGTGGTAAATCCCAAAAGAGTT
205763028 ATGT-GTAAAT
1 ATGTGGTAAAT
205763038 GCACTAACTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (23 bp):
ATGTGGTAAATCCCAAAAGAGTT
Found at i:205763021 original size:22 final size:22
Alignment explanation
Indices: 205762995--205763039 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
205762985 GTGGTTGATC
205762995 CCAAAAGAGTTATGTGTAAATG
1 CCAAAAGAGTTATGTGTAAATG
205763017 CCAAAAGAGTTATGTGTAAATG
1 CCAAAAGAGTTATGTGTAAATG
205763039 C
1 C
205763040 ACTAACTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (22 bp):
CCAAAAGAGTTATGTGTAAATG
Found at i:205764448 original size:46 final size:46
Alignment explanation
Indices: 205764398--205764573 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
205764388 TGGTTGAGCA
205764398 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
205764444 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
205764489 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
205764537 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
205764574 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:205764554 original size:93 final size:93
Alignment explanation
Indices: 205764395--205764566 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
205764385 GGATGGTTGA
* *
205764395 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
205764460 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
205764488 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
205764553 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
205764567 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:205772025 original size:46 final size:46
Alignment explanation
Indices: 205771975--205772150 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
205771965 TGGTTGAGCA
205771975 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
205772021 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
205772066 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
205772114 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
205772151 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:205772131 original size:93 final size:93
Alignment explanation
Indices: 205771972--205772143 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
205771962 GGATGGTTGA
* *
205771972 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
205772037 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
205772065 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
205772130 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
205772144 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:205780116 original size:28 final size:28
Alignment explanation
Indices: 205780083--205780176 Score: 125
Period size: 28 Copynumber: 3.4 Consensus size: 28
205780073 GACTATGAGT
* **
205780083 GTGATTAGGCCTGACAGGCCATATGAAA
1 GTGATTGGGCCTGATGGGCCATATGAAA
*
205780111 GTGATTGGGCCTGATGGGCCATATGAAT
1 GTGATTGGGCCTGATGGGCCATATGAAA
* *
205780139 GTGATTGGGCCCGATGGGCCATATGAAT
1 GTGATTGGGCCTGATGGGCCATATGAAA
*
205780167 GAGATTGGGC
1 GTGATTGGGC
205780177 TTAAAAGGGC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.24
Consensus pattern (28 bp):
GTGATTGGGCCTGATGGGCCATATGAAA
Found at i:205781464 original size:17 final size:18
Alignment explanation
Indices: 205781431--205781464 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
205781421 TATGATGAAG
205781431 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
205781449 GGTTTTCAAT-AAAACA
1 GGTTTTCAATGAAAACA
205781465 CTTCAATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:205783874 original size:40 final size:40
Alignment explanation
Indices: 205783819--205784028 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
205783809 AACATTGGAA
205783819 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205783859 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
205783899 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
205783939 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
205783978 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
205784019 CTATATCCGG
1 ATATATCCGG
205784029 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:205794035 original size:30 final size:30
Alignment explanation
Indices: 205793991--205794079 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
205793981 CAAAGATAAC
205793991 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
205794020 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
205794050 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
205794080 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:205794039 original size:15 final size:15
Alignment explanation
Indices: 205793991--205794070 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
205793981 CAAAGATAAC
*
205793991 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
205794005 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
205794020 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
205794035 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
205794050 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
205794065 AAGAAA
1 AAGAAA
205794071 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:205794079 original size:15 final size:15
Alignment explanation
Indices: 205794002--205794079 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
205793992 AGAAAACCGA
205794002 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
205794017 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
205794031 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
205794046 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
205794062 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
205794077 ATA
1 ATA
205794080 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:205797131 original size:46 final size:48
Alignment explanation
Indices: 205797009--205797138 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 48
205796999 TGTAACCCGC
205797009 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * *
205797059 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
205797102 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
205797139 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.41
47 29 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:205797157 original size:46 final size:44
Alignment explanation
Indices: 205797014--205797157 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
205797004 CCCGCCCATA
205797014 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
205797061 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
205797107 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
205797153 AGTGA
1 AGTGA
205797158 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:205800940 original size:40 final size:40
Alignment explanation
Indices: 205800891--205801058 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
205800881 TCTTCGGAAT
* *
205800891 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* **** *
205800930 TTAACCCGGAT-TTGGTAGCTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCA-CTAGCACAAATGCCTTCGGGTC
* * *
205800970 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
205801010 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
205801050 TTAGCCCGG
1 TTAGCCCGG
205801059 GTATCATTCA
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 5 0.05
40 98 0.93
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:205801018 original size:80 final size:80
Alignment explanation
Indices: 205800882--205801058 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
205800872 AACCGAGCTT
* * * * **
205800882 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
*
205800946 -AGCTTGCACAAATGC
66 CA-CTAGCACAAATGC
* ** *
205800961 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAA
*
205801025 TCACTAGCATAAATGC
65 TCACTAGCACAAATGC
205801041 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
205801059 GTATCATTCA
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 10 0.12
80 69 0.84
81 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT
CACTAGCACAAATGC
Found at i:205801921 original size:27 final size:27
Alignment explanation
Indices: 205801883--205801947 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
205801873 TCCAAAACAC
*
205801883 AAATCTTACTTTCCATGCAATGAGCAT
1 AAATCATACTTTCCATGCAATGAGCAT
205801910 AAATCATACTTTCCATGCAATGAGCAT
1 AAATCATACTTTCCATGCAATGAGCAT
205801937 AAATCATACTT
1 AAATCATACTT
205801948 ATGGATGTAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATCATACTTTCCATGCAATGAGCAT
Found at i:205806126 original size:40 final size:40
Alignment explanation
Indices: 205806049--205806266 Score: 352
Period size: 40 Copynumber: 5.5 Consensus size: 40
205806039 AAACCAAGTA
* *
205806049 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
205806088 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
205806128 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
205806168 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
205806208 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
205806248 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
205806267 TTATCATCCG
Statistics
Matches: 170, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 15 0.09
40 155 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Done.