Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 655 of 770
Found at i:205812254 original size:17 final size:18
Alignment explanation
Indices: 205812212--205812260 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
205812202 AGTTGAAAAG
205812212 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
205812231 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
205812248 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
205812261 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:205813146 original size:40 final size:39
Alignment explanation
Indices: 205813080--205813245 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
205813070 AAATTGAATG
* * *
205813080 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
205813119 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
205813158 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
205813198 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
205813238 ATATCCGG
1 ATATCCGG
205813246 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:205820249 original size:17 final size:18
Alignment explanation
Indices: 205820207--205820255 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
205820197 AGTTGAAAAG
205820207 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
205820226 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
205820243 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
205820256 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:205821142 original size:40 final size:38
Alignment explanation
Indices: 205821076--205821240 Score: 154
Period size: 39 Copynumber: 4.2 Consensus size: 38
205821066 AAATTGAATG
* * *
205821076 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCTGG-TATT
* * **
205821115 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCTGGTATT
205821154 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGCCCGAAGGCAATT-GTGCTG-G-TATT
* * **
205821193 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCTGGT-ATT
205821233 ATATCCGG
1 ATATCCGG
205821241 TTATATTCCG
Statistics
Matches: 103, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
37 3 0.03
38 14 0.14
39 43 0.42
40 41 0.40
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCTGGTATT
Found at i:205821207 original size:78 final size:78
Alignment explanation
Indices: 205821076--205821224 Score: 203
Period size: 78 Copynumber: 1.9 Consensus size: 78
205821066 AAATTGAATG
*
205821076 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
205821141 TTGTGCTAGTGGT
66 TTGTGCTAGTGGT
* * ** *
205821154 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
205821217 ATTTGTGC
64 AATTGTGC
205821225 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 4 0.06
78 58 0.94
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGT
Found at i:205825359 original size:40 final size:40
Alignment explanation
Indices: 205825255--205825469 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
205825245 CGGATGATAA
* *
205825255 CCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
205825294 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
205825333 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
205825373 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
205825413 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
205825453 CC-GGCTAAAT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGG
205825470 TACTTGGTTG
Statistics
Matches: 167, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
38 7 0.04
39 54 0.32
40 106 0.63
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:205833276 original size:40 final size:40
Alignment explanation
Indices: 205833221--205833438 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
205833211 CGGATGATAA
* * *
205833221 CCGGGCTAAGCCCCGACGGCATTTGTGCTA-TTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT-ACTATA-T
* *
205833261 CCGGGCTAAGCCCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
205833301 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
205833341 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
205833381 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
205833421 CC-AGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
205833439 TACTTGGTTG
Statistics
Matches: 162, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.10
40 143 0.88
41 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:205836059 original size:28 final size:27
Alignment explanation
Indices: 205836028--205836090 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
205836018 AGTTACTAAA
*
205836028 ATACCCCTAAGTATGGAAAATTACCATT
1 ATACCCCTAAG-ATGGAAAATGACCATT
* * *
205836056 ATACCTCT-AGGTGTAAAATGACCATT
1 ATACCCCTAAGATGGAAAATGACCATT
205836082 ATACCCCTA
1 ATACCCCTA
205836091 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 20 0.69
27 2 0.07
28 7 0.24
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.29
Consensus pattern (27 bp):
ATACCCCTAAGATGGAAAATGACCATT
Found at i:205836325 original size:27 final size:27
Alignment explanation
Indices: 205836200--205836309 Score: 193
Period size: 27 Copynumber: 4.1 Consensus size: 27
205836190 GAAGCGTCTA
* *
205836200 GGTGGCTATGCCACAATTATCTGTTCT
1 GGTGGCTCTGCCACAAATATCTGTTCT
*
205836227 GGTGGTTCTGCCACAAATATCTGTTCT
1 GGTGGCTCTGCCACAAATATCTGTTCT
205836254 GGTGGCTCTGCCACAAATATCTGTTCT
1 GGTGGCTCTGCCACAAATATCTGTTCT
205836281 GGTGGCTCTGCCACAAATATCTGTTCT
1 GGTGGCTCTGCCACAAATATCTGTTCT
205836308 GG
1 GG
205836310 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35
Consensus pattern (27 bp):
GGTGGCTCTGCCACAAATATCTGTTCT
Found at i:205839476 original size:40 final size:40
Alignment explanation
Indices: 205839432--205839578 Score: 244
Period size: 40 Copynumber: 3.7 Consensus size: 40
205839422 GCTACTTGCT
205839432 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
205839472 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
205839512 CAAATGCCTTCGGG-CTTAGCCCGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
205839550 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
205839579 CATCCGAATA
Statistics
Matches: 99, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
38 24 0.24
39 20 0.20
40 55 0.56
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:205839565 original size:78 final size:80
Alignment explanation
Indices: 205839432--205839578 Score: 244
Period size: 78 Copynumber: 1.9 Consensus size: 80
205839422 GCTACTTGCT
** *
205839432 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
205839497 TTATAGTAACTCGCA
66 TTATAGTAACTCGCA
*
205839512 CAAATGCCTTCGGG-CTTAGCCCGAAT-TAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
205839575 TTAT
66 TTAT
205839579 CATCCGAATA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
78 39 0.62
79 10 0.16
80 14 0.22
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
TTATAGTAACTCGCA
Found at i:205844032 original size:40 final size:40
Alignment explanation
Indices: 205843977--205844144 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
205843967 TGAATGATAC
* *
205843977 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
205844017 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
205844057 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
205844097 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
205844137 CC-GGCTAA
1 CCGGGCTAA
205844145 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:205848513 original size:20 final size:20
Alignment explanation
Indices: 205848488--205848532 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
205848478 GCGTCTAGAC
205848488 AATTAAAGCCACATGAGAAA
1 AATTAAAGCCACATGAGAAA
205848508 AATTAAAGCCACATGAGAAA
1 AATTAAAGCCACATGAGAAA
205848528 AATTA
1 AATTA
205848533 TCCGACCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.56, C:0.13, G:0.13, T:0.18
Consensus pattern (20 bp):
AATTAAAGCCACATGAGAAA
Found at i:205852309 original size:40 final size:40
Alignment explanation
Indices: 205852254--205852421 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
205852244 TGAATGATAC
* *
205852254 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
205852294 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
205852334 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
205852374 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
205852414 CC-GGCTAA
1 CCGGGCTAA
205852422 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:205858986 original size:29 final size:29
Alignment explanation
Indices: 205858948--205859026 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
205858938 CATACCCTCG
* *
205858948 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
205858977 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
205859006 AGCACGCACACTTAGTGCCAT
1 AGCTCGCACACCCAGTGCCAT
205859027 CTCGTCACCG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:205866852 original size:29 final size:29
Alignment explanation
Indices: 205866801--205866872 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
205866791 CCTCCGAGCT
* * * *
205866801 CGCACAC-CAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
205866829 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
205866858 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
205866873 GATCTCGTCA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 6 0.16
29 31 0.84
ACGTcount: A:0.22, C:0.33, G:0.17, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:205875362 original size:49 final size:48
Alignment explanation
Indices: 205875302--205875602 Score: 457
Period size: 47 Copynumber: 6.3 Consensus size: 48
205875292 GTATGAGATA
*
205875302 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
205875351 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
205875398 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
205875447 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* *
205875494 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* * * * * * *
205875541 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
*
205875588 TATAAATGTGATAAG
1 TATATATGTGATAAG
205875603 TCCCGAAGGG
Statistics
Matches: 240, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 148 0.62
48 5 0.02
49 87 0.36
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.30
Consensus pattern (48 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
Found at i:205875408 original size:96 final size:96
Alignment explanation
Indices: 205875302--205875602 Score: 480
Period size: 96 Copynumber: 3.2 Consensus size: 96
205875292 GTATGAGATA
*
205875302 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
205875367 CCTAATGGCCGATGTGATGAATGTGAAAGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTG
205875398 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
*
205875463 CCTAATGGCCGATGTGATGAATGTGAAGGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
205875494 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AAG-GTGTATATATGTGATAGGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
* * * * * *
205875557 CCGAGTGGCCAACGTGATGGATGTGGAAGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTG
*
205875588 TATAAATGTGATAAG
1 TATATATGTGATAAG
205875603 TCCCGAAGGG
Statistics
Matches: 192, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
94 56 0.29
95 3 0.02
96 133 0.69
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.30
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:205877505 original size:28 final size:28
Alignment explanation
Indices: 205877459--205877527 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
205877449 TTTAAAACCC
*
205877459 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
205877486 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
205877514 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
205877528 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:205878855 original size:20 final size:20
Alignment explanation
Indices: 205878832--205878869 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
205878822 CACATCCAAA
*
205878832 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
205878852 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
205878870 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:205884569 original size:28 final size:28
Alignment explanation
Indices: 205884523--205884591 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
205884513 TTTAAAACCC
*
205884523 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
205884550 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
205884578 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
205884592 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:205887531 original size:30 final size:30
Alignment explanation
Indices: 205887495--205887595 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
205887485 GACAAGATTG
* * *
205887495 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
205887525 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
205887553 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
205887582 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
205887596 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:205887607 original size:29 final size:28
Alignment explanation
Indices: 205887524--205887599 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
205887514 AAAATTGTAC
* *
205887524 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
205887552 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
205887581 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
205887600 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:205895410 original size:30 final size:30
Alignment explanation
Indices: 205895374--205895474 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
205895364 GACAAGATTG
* * *
205895374 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
205895404 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
205895432 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
205895461 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
205895475 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:205895486 original size:29 final size:28
Alignment explanation
Indices: 205895403--205895478 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
205895393 AAAATTGTAC
* *
205895403 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
205895431 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
205895460 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
205895479 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:205906370 original size:80 final size:80
Alignment explanation
Indices: 205906286--205906434 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
205906276 TATGGTAACC
* * * *
205906286 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
205906350 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
205906366 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
205906431 CCGG
66 CCGG
205906435 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:205906376 original size:40 final size:38
Alignment explanation
Indices: 205906327--205906434 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
205906317 ATCACGATTT
*
205906327 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
205906367 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
205906407 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
205906435 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:205910506 original size:29 final size:29
Alignment explanation
Indices: 205910472--205910529 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
205910462 CACTAAGGAA
205910472 TCATAGTGACCATATCTCGTTCTGAAGGC
1 TCATAGTGACCATATCTCGTTCTGAAGGC
205910501 TCATAGTGACCATATCTCGTTCTGAAGGC
1 TCATAGTGACCATATCTCGTTCTGAAGGC
205910530 AGTCTTGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (29 bp):
TCATAGTGACCATATCTCGTTCTGAAGGC
Found at i:205914326 original size:80 final size:80
Alignment explanation
Indices: 205914242--205914390 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
205914232 TATGGTAACC
* * * *
205914242 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
205914306 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
205914322 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
205914387 CCGG
66 CCGG
205914391 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:205914332 original size:40 final size:38
Alignment explanation
Indices: 205914283--205914390 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
205914273 ATCACGATTT
*
205914283 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
205914323 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
205914363 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
205914391 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:205922247 original size:40 final size:40
Alignment explanation
Indices: 205922190--205922283 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 40
205922180 ATTGAATGAT
* * * *
205922190 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACTAC
* * * *
205922230 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACTAC
205922270 ATCCGGGCTAAGAC
1 ATCCGGGCTAAGAC
205922284 AAGAAGGCAT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACTAC
Found at i:205930348 original size:40 final size:39
Alignment explanation
Indices: 205930262--205930373 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 39
205930252 GCTGGTAATT
*
205930262 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGAC
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC
* *
205930301 TACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-
1 -ACATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGAC
* *
205930343 A-ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGC
205930374 GGGTTACCAT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
40 57 0.90
41 1 0.02
43 5 0.08
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
ACATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC
Found at i:205937200 original size:46 final size:46
Alignment explanation
Indices: 205937150--205937325 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
205937140 TGGTTGAGCA
205937150 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
205937196 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
205937241 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
205937289 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
205937326 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:205937306 original size:93 final size:93
Alignment explanation
Indices: 205937147--205937317 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
205937137 GGATGGTTGA
* *
205937147 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
205937212 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
205937240 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
205937305 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
205937318 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:205940294 original size:15 final size:15
Alignment explanation
Indices: 205940274--205940342 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
205940264 GTATCTTGGG
205940274 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
205940289 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
205940304 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
205940319 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
205940334 TTTCTTTAT
1 TTTCTTTAT
205940343 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:205940343 original size:30 final size:30
Alignment explanation
Indices: 205940265--205940352 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
205940255 CATAGTATCG
* * * *
205940265 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
205940295 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
205940325 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
205940353 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:205942772 original size:46 final size:46
Alignment explanation
Indices: 205942722--205942897 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
205942712 TGGTTGAGCA
205942722 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
205942768 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
205942813 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
205942861 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
205942898 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:205942878 original size:93 final size:93
Alignment explanation
Indices: 205942719--205942889 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
205942709 GGATGGTTGA
* *
205942719 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
205942784 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
205942812 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
205942877 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
205942890 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:205945864 original size:15 final size:15
Alignment explanation
Indices: 205945844--205945912 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
205945834 GTATCTTGGG
205945844 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
205945859 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
205945874 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
205945889 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
205945904 TTTCTTTAT
1 TTTCTTTAT
205945913 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:205945913 original size:30 final size:30
Alignment explanation
Indices: 205945835--205945922 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
205945825 CATAGTATCG
* * * *
205945835 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
205945865 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
205945895 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
205945923 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:205949879 original size:40 final size:40
Alignment explanation
Indices: 205949813--205949979 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
205949803 AAATTGAATG
* * *
205949813 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
205949852 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
205949892 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
205949932 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
205949972 ATATCCGG
1 ATATCCGG
205949980 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:205956985 original size:17 final size:18
Alignment explanation
Indices: 205956943--205956991 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
205956933 AGTTGAAAAG
205956943 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
205956962 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
205956979 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
205956992 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:205957878 original size:40 final size:40
Alignment explanation
Indices: 205957812--205957978 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
205957802 AAATTGAATG
* * *
205957812 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
205957851 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
205957891 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
205957931 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
205957971 ATATCCGG
1 ATATCCGG
205957979 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:205959700 original size:48 final size:48
Alignment explanation
Indices: 205959628--205959891 Score: 342
Period size: 48 Copynumber: 5.6 Consensus size: 48
205959618 TGCCTCATGT
** * * *
205959628 CGATGCCATGTCTTAGACATGGTCTTACACTAGCTCACATAACGATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGC
* * *
205959676 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGC
* * *
205959724 CGATGTCATGTCCTAGACATGGTCTTACACTGGCTCACATAATAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGC
*
205959772 CGATGCCATGTCCCAGACATGGTCATACACTGGCTCACATAACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGC
* * *
205959820 TGATGCCA--T----GACATGGTCTTACACGGGTTCACATAACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGC
*
205959862 CGATGCCATGTCCCAGACATGGTTTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
205959892 GATTACACAT
Statistics
Matches: 190, Mismatches: 20, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
42 37 0.19
44 1 0.01
46 1 0.01
48 151 0.79
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGC
Found at i:205964035 original size:29 final size:29
Alignment explanation
Indices: 205964000--205964136 Score: 127
Period size: 29 Copynumber: 4.7 Consensus size: 29
205963990 CTACTCGATT
* *
205964000 TCGCACACTTAGTGCCACGTAATTT-AAGC
1 TCGCACACTTAGTGCCA-ATAATTTCCAGC
** **
205964029 TCGCACACACAGTGCCATATTTTTTTCCAGC
1 TCGCACACTTAGTGCCA-A-TAATTTCCAGC
*
205964060 TTGCACACTTAGTGCCAA-ATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
205964089 ACGCACACTTAGTGCC-ATATATTTCCAGC
1 TCGCACACTTAGTGCCAATA-ATTTCCAGC
*
205964118 ACGCACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
205964137 CTCGACACCA
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
28 1 0.01
29 64 0.72
30 7 0.08
31 17 0.19
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
TCGCACACTTAGTGCCAATAATTTCCAGC
Found at i:205964076 original size:60 final size:58
Alignment explanation
Indices: 205964001--205964135 Score: 155
Period size: 60 Copynumber: 2.3 Consensus size: 58
205963991 TACTCGATTT
** * * *
205964001 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATATTTTTTTCCAGCT
1 CGCACACTTAGTGCCAAAT-ATTTCAAGCACGCACACACAGTGCCATA--TATTTCCAGCA
* * **
205964061 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
205964119 CGCACACTTAGTGCCAA
1 CGCACACTTAGTGCCAA
205964136 TCTCGACACC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
58 25 0.39
59 4 0.06
60 35 0.55
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCAAATATTTCAAGCACGCACACACAGTGCCATATATTTCCAGCA
Found at i:205971943 original size:40 final size:39
Alignment explanation
Indices: 205971778--205971961 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
205971768 AAATTGAATG
* * *
205971778 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
205971818 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
205971858 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
205971898 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
205971937 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
205971962 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:205971986 original size:80 final size:81
Alignment explanation
Indices: 205971818--205972006 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
205971808 GCTGGAAATT
* * * *
205971818 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
205971883 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
205971899 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
205971962 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
205971978 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
205972007 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:205981084 original size:29 final size:29
Alignment explanation
Indices: 205980994--205981153 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
205980984 ACTCGATTTC
* * **
205980994 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
205981023 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** * *
205981051 CGCACACCCAGTGCCGTATATTTCTAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
205981081 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
205981110 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
205981139 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
205981154 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 107 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:205983528 original size:41 final size:41
Alignment explanation
Indices: 205983431--205983533 Score: 127
Period size: 41 Copynumber: 2.5 Consensus size: 41
205983421 TGCAGGGTGC
* *
205983431 ACACGCCCGTGTGGTCAGGCCGTGTGGCTCACACGGTCAAGAG
1 ACACGCCCATGT-CTCA-GCCGTGTGGCTCACACGGTCAAGAG
*
205983474 ACACGCCCATGTCTTAGCCGTGTGAGC-CACACGGTCAAGAG
1 ACACGCCCATGTCTCAGCCGTGTG-GCTCACACGGTCAAGAG
* *
205983515 ACACGCTCGTGTCTCAGCC
1 ACACGCCCATGTCTCAGCC
205983534 TGTATGGGTA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 38 0.72
42 4 0.08
43 11 0.21
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.17
Consensus pattern (41 bp):
ACACGCCCATGTCTCAGCCGTGTGGCTCACACGGTCAAGAG
Found at i:205990990 original size:40 final size:39
Alignment explanation
Indices: 205990945--205991151 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
205990935 CGGAATACAA
*
205990945 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
205990985 CCGGATAGAACGACTTGCACAAATGCCTTC-GGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
205991024 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
205991064 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
205991104 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
205991144 CCGGATAT
1 CCGGATAT
205991152 CATTCAATTG
Statistics
Matches: 140, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 35 0.25
40 105 0.75
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:205991063 original size:79 final size:80
Alignment explanation
Indices: 205990945--205991150 Score: 238
Period size: 79 Copynumber: 2.6 Consensus size: 80
205990935 CGGAATACAA
* * *
205990945 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAA-CGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGC-ACTAGCACAAAT
*
205991009 GCCTTC-GGTATTAGC
65 GCCTTCGGGTATTAAC
* * *
205991024 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTAGCACAAAT
*
205991088 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
205991104 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
205991151 TCATTCAATT
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 2 0.02
79 59 0.55
80 46 0.43
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:205995990 original size:40 final size:40
Alignment explanation
Indices: 205995945--205996111 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
205995935 CGGAATATAA
205995945 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
205995985 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
205996025 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
205996065 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
205996104 CCGGATAT
1 CCGGATAT
205996112 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:206003971 original size:40 final size:40
Alignment explanation
Indices: 206003926--206004092 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
206003916 CGGAATATAA
206003926 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
206003966 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
206004006 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
206004046 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
206004085 CCGGATAT
1 CCGGATAT
206004093 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:206004934 original size:17 final size:19
Alignment explanation
Indices: 206004911--206004956 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
206004901 AAGAAGCATG
206004911 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
206004929 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
206004947 AATCATGCTC
1 AATCATGCTC
206004957 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:206006299 original size:13 final size:14
Alignment explanation
Indices: 206006283--206006311 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
206006273 TTATAAATAT
206006283 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
206006296 TTATAATGGTTTAA
1 TTATAATGGTTTAA
206006310 TT
1 TT
206006312 CATTGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:206007064 original size:32 final size:31
Alignment explanation
Indices: 206007028--206007112 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
206007018 TTAGATTTAA
* * *
206007028 TGTTTTTTATTGTATTTTTATGCTACATTTGC
1 TGTTTTTGATTGGA-TTTCATGCTACATTTGC
* *
206007060 TGTTTTTGGTTGGATTTCATGCTATATTTGC
1 TGTTTTTGATTGGATTTCATGCTACATTTGC
* *
206007091 TGTTTTTGGTTGGATTTAATGC
1 TGTTTTTGATTGGATTTCATGC
206007113 AGGAAGGGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 36 0.77
32 11 0.23
ACGTcount: A:0.14, C:0.08, G:0.20, T:0.58
Consensus pattern (31 bp):
TGTTTTTGATTGGATTTCATGCTACATTTGC
Found at i:206007082 original size:31 final size:31
Alignment explanation
Indices: 206007047--206007112 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
206007037 TTGTATTTTT
*
206007047 ATGCTACATTTGCTGTTTTTGGTTGGATTTC
1 ATGCTACATTTGCTGTTTTTGGTTGGATTTA
*
206007078 ATGCTATATTTGCTGTTTTTGGTTGGATTTA
1 ATGCTACATTTGCTGTTTTTGGTTGGATTTA
206007109 ATGC
1 ATGC
206007113 AGGAAGGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.15, C:0.11, G:0.23, T:0.52
Consensus pattern (31 bp):
ATGCTACATTTGCTGTTTTTGGTTGGATTTA
Found at i:206010982 original size:21 final size:22
Alignment explanation
Indices: 206010942--206010982 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
206010932 TGGATTATGC
*
206010942 TTGAAAGAATAAAGAAATGAAA
1 TTGAAAGAAAAAAGAAATGAAA
*
206010964 TTGAAA-AAAAAAGATATGA
1 TTGAAAGAAAAAAGAAATGA
206010983 TGAAAACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.63, C:0.00, G:0.17, T:0.20
Consensus pattern (22 bp):
TTGAAAGAAAAAAGAAATGAAA
Found at i:206012078 original size:24 final size:24
Alignment explanation
Indices: 206012051--206012189 Score: 251
Period size: 24 Copynumber: 5.8 Consensus size: 24
206012041 GCTGGAAATA
206012051 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
206012075 TATGGCACTATGTGTGCGATCCAC
1 TATGGCACTATGTGTGCGATTTAC
206012099 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
206012123 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
206012147 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
206012171 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
206012190 ACATAATAAG
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 110 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:206012203 original size:48 final size:48
Alignment explanation
Indices: 206012054--206012211 Score: 214
Period size: 48 Copynumber: 3.3 Consensus size: 48
206012044 GGAAATATAT
*
206012054 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACT-AT-
1 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA-ACA-TAATA
** *
206012102 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTA
1 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA
*
206012149 TGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGAACATAATA
1 -GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA
*
206012198 AGCACTATGTGTGC
1 GGCACTATGTGTGC
206012212 CACTTCGGTT
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
45 1 0.01
46 1 0.01
48 90 0.93
49 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (48 bp):
GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA
Found at i:206012203 original size:72 final size:72
Alignment explanation
Indices: 206012050--206012211 Score: 254
Period size: 72 Copynumber: 2.2 Consensus size: 72
206012040 TGCTGGAAAT
*
206012050 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
**
206012115 CGATTTA
66 CGACATA
* * *
206012122 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
206012187 CGAACATA
66 CG-ACATA
206012195 ATA-AGCACTATGTGTGC
1 ATATAGCACTATGTGTGC
206012212 CACTTCGGTT
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
72 78 0.94
73 5 0.06
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (72 bp):
ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
CGACATA
Found at i:206019857 original size:24 final size:24
Alignment explanation
Indices: 206019830--206019968 Score: 251
Period size: 24 Copynumber: 5.8 Consensus size: 24
206019820 GCTGGAAATA
206019830 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
206019854 TATGGCACTATGTGTGCGATCCAC
1 TATGGCACTATGTGTGCGATTTAC
206019878 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
206019902 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
206019926 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
206019950 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
206019969 ACATAATAAG
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 110 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:206019982 original size:48 final size:48
Alignment explanation
Indices: 206019833--206019990 Score: 214
Period size: 48 Copynumber: 3.3 Consensus size: 48
206019823 GGAAATATAT
*
206019833 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACT-AT-
1 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGA-ACA-TAATA
** *
206019881 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTA
1 GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA
*
206019928 TGGCACTATGTGTGCGATTTGCTATGGCACTATGTGTGCGAACATAATA
1 -GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA
*
206019977 AGCACTATGTGTGC
1 GGCACTATGTGTGC
206019991 AACCTTCGGT
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
45 1 0.01
46 1 0.01
48 90 0.93
49 5 0.05
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (48 bp):
GGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA
Found at i:206019982 original size:72 final size:72
Alignment explanation
Indices: 206019829--206019990 Score: 236
Period size: 72 Copynumber: 2.2 Consensus size: 72
206019819 TGCTGGAAAT
*
206019829 ATATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
**
206019894 CGATTTA
66 CGACATA
* * ***
206019901 CTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTGCTATGGCACTATGTGTG
1 ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
206019966 CGAACATA
66 CG-ACATA
206019974 ATA-AGCACTATGTGTGC
1 ATATAGCACTATGTGTGC
206019991 AACCTTCGGT
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
72 76 0.94
73 5 0.06
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (72 bp):
ATATAGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTG
CGACATA
Found at i:206022338 original size:14 final size:14
Alignment explanation
Indices: 206022319--206022350 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
206022309 AAGAAAATAG
206022319 ATGTGCAAAAGAAC
1 ATGTGCAAAAGAAC
*
206022333 ATGTGCAAAAGAAT
1 ATGTGCAAAAGAAC
206022347 ATGT
1 ATGT
206022351 ACTTGGCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.09, G:0.22, T:0.22
Consensus pattern (14 bp):
ATGTGCAAAAGAAC
Found at i:206024749 original size:15 final size:15
Alignment explanation
Indices: 206024729--206024761 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
206024719 TACAAGCAAG
206024729 GAAAAAATGGAGAAA
1 GAAAAAATGGAGAAA
206024744 GAAAAAATGGAGAAA
1 GAAAAAATGGAGAAA
206024759 GAA
1 GAA
206024762 CGAGCAAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (15 bp):
GAAAAAATGGAGAAA
Found at i:206027576 original size:26 final size:25
Alignment explanation
Indices: 206027546--206027634 Score: 88
Period size: 26 Copynumber: 3.3 Consensus size: 25
206027536 ATTAAGAATG
206027546 TTATTAAATTATATTTAATAATAAT
1 TTATTAAATTATATTTAATAATAAT
* * * *
206027571 TATATTAAAATATCATTAAAATATTTATTT
1 T-TATTAAATTAT-ATT-TAATA-ATA-AT
206027601 TTATTAAATTATATTTAATAATAAT
1 TTATTAAATTATATTTAATAATAAT
206027626 CTTATTAAA
1 -TTATTAAA
206027635 ATTTGATACC
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
25 2 0.04
26 20 0.40
27 7 0.14
28 7 0.14
29 12 0.24
30 2 0.04
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TTATTAAATTATATTTAATAATAAT
Found at i:206027595 original size:35 final size:37
Alignment explanation
Indices: 206027527--206027597 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 37
206027517 TTAATATAAA
* *
206027527 AATAATTATATTAAGAATGTTATTAAATTATATTTAAT
1 AATAATTATATTAAGAATATCATTAAA-TATATTTAAT
206027565 AATAATTATATTAA-AATATCATTAAA-ATATTTA
1 AATAATTATATTAAGAATATCATTAAATATATTTA
206027598 TTTTTATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
35 7 0.23
37 10 0.32
38 14 0.45
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (37 bp):
AATAATTATATTAAGAATATCATTAAATATATTTAAT
Found at i:206027818 original size:16 final size:16
Alignment explanation
Indices: 206027790--206027872 Score: 87
Period size: 16 Copynumber: 5.2 Consensus size: 16
206027780 TGAATTACTG
* *
206027790 ATTACAACCCTATTCT
1 ATTACAGCCCTATTCC
* *
206027806 ATTATAGCTCTATTCC
1 ATTACAGCCCTATTCC
* *
206027822 ATTACA-ACTTCATTCC
1 ATTACAGCCCT-ATTCC
*
206027838 ATTATAGCCCTATTCC
1 ATTACAGCCCTATTCC
206027854 ATTACAGCCCTATTCC
1 ATTACAGCCCTATTCC
206027870 ATT
1 ATT
206027873 CAAGTGAATC
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
15 1 0.02
16 50 0.94
17 2 0.04
ACGTcount: A:0.28, C:0.30, G:0.04, T:0.39
Consensus pattern (16 bp):
ATTACAGCCCTATTCC
Found at i:206027869 original size:32 final size:31
Alignment explanation
Indices: 206027790--206027872 Score: 103
Period size: 32 Copynumber: 2.6 Consensus size: 31
206027780 TGAATTACTG
* *
206027790 ATTACAACCCTATTCTATTATAGCTCTATTCC
1 ATTAC-ACCCTATTCCATTATAGCCCTATTCC
* *
206027822 ATTACAACTTCATTCCATTATAGCCCTATTCC
1 ATTACACCCT-ATTCCATTATAGCCCTATTCC
206027854 ATTACAGCCCTATTCCATT
1 ATTACA-CCCTATTCCATT
206027873 CAAGTGAATC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
31 3 0.07
32 38 0.88
33 2 0.05
ACGTcount: A:0.28, C:0.30, G:0.04, T:0.39
Consensus pattern (31 bp):
ATTACACCCTATTCCATTATAGCCCTATTCC
Found at i:206028296 original size:22 final size:22
Alignment explanation
Indices: 206028271--206028318 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
206028261 ATTCTTGTTG
206028271 AATTTTAATTAATTTTATAATA
1 AATTTTAATTAATTTTATAATA
* *
206028293 AATTTTGATTAATTTTATATTA
1 AATTTTAATTAATTTTATAATA
206028315 AATT
1 AATT
206028319 GTACTGGACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
AATTTTAATTAATTTTATAATA
Found at i:206029617 original size:18 final size:19
Alignment explanation
Indices: 206029596--206029634 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
206029586 AATTTGAAAC
* *
206029596 AAAACAT-AAATTTTTGGA
1 AAAACATGAAAATTTGGGA
206029614 AAAACATGAAAATTTGGGA
1 AAAACATGAAAATTTGGGA
206029633 AA
1 AA
206029635 CAAGGGTCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.54, C:0.05, G:0.15, T:0.26
Consensus pattern (19 bp):
AAAACATGAAAATTTGGGA
Found at i:206031485 original size:41 final size:41
Alignment explanation
Indices: 206031440--206031554 Score: 167
Period size: 41 Copynumber: 2.8 Consensus size: 41
206031430 TTTGTTGTCT
** * *
206031440 TTTTTGGATAATGTCATTTTCAACCTTTTCATTTGATACCC
1 TTTTTGGATAACATCCTTTTCAACCTCTTCATTTGATACCC
*
206031481 TTTTTGGATAACATCCTTTTCAACCTCTTCATTTGATATCC
1 TTTTTGGATAACATCCTTTTCAACCTCTTCATTTGATACCC
**
206031522 TTTTCAGATAACATCCTTTTCAACCTCTTCATT
1 TTTTTGGATAACATCCTTTTCAACCTCTTCATT
206031555 GATTTGGAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.23, C:0.23, G:0.07, T:0.47
Consensus pattern (41 bp):
TTTTTGGATAACATCCTTTTCAACCTCTTCATTTGATACCC
Found at i:206033825 original size:22 final size:23
Alignment explanation
Indices: 206033784--206033827 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
206033774 AATACATATA
206033784 TATGTATATATATATAATAAAAG
1 TATGTATATATATATAATAAAAG
206033807 TATGTA-ATA-ATAATAATAAAA
1 TATGTATATATAT-ATAATAAAA
206033828 TCTACAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 2 0.10
22 12 0.60
23 6 0.30
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (23 bp):
TATGTATATATATATAATAAAAG
Found at i:206033922 original size:4 final size:4
Alignment explanation
Indices: 206033908--206033948 Score: 55
Period size: 4 Copynumber: 10.2 Consensus size: 4
206033898 TAAAATAATG
* * *
206033908 ATAT GTAT ATAT ATAT ATAT ATAT ATAT ACAT ATGT ATAT A
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT A
206033949 AAATATACAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (4 bp):
ATAT
Found at i:206033922 original size:6 final size:6
Alignment explanation
Indices: 206033908--206033948 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
206033898 TAAAATAATG
* * *
206033908 ATATGT ATATAT ATATAT ATATAT ATATAC ATATGT ATATA
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATA
206033949 AAATATACAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (6 bp):
ATATAT
Found at i:206034143 original size:20 final size:21
Alignment explanation
Indices: 206034114--206034165 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
206034104 AACTAATGGC
*
206034114 ATATATACATAATATATATAT
1 ATATACACATAATATATATAT
206034135 A-ATACACATAATATATATAT
1 ATATACACATAATATATATAT
*
206034155 ATATATACATA
1 ATATACACATA
206034166 TTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATACACATAATATATATAT
Found at i:206035026 original size:14 final size:15
Alignment explanation
Indices: 206034991--206035026 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
206034981 TTTTTGGTTT
206034991 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
206035006 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
206035020 TTTTTTT
1 TTTTTTT
206035027 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:206035027 original size:15 final size:16
Alignment explanation
Indices: 206034990--206035028 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
206034980 TTTTTTGGTT
206034990 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
206035006 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
206035020 TTTTTTTTG
1 TTTTTTTTG
206035029 GTGCTGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.15, C:0.05, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:206035040 original size:32 final size:32
Alignment explanation
Indices: 206034988--206035063 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
206034978 TTTTTTTTGG
* *
206034988 TTTTTTTTTTGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
*
206035020 TTTTTTTTGGTGCTGG-AATTTTTTGCTGG-AT
1 TTTTTTTT-GTGCTGGAAATTTTTTGCTGGAAA
*
206035051 TTTTTTTTTTGCT
1 TTTTTTTTGTGCT
206035064 TCCCCTCTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 4 0.10
31 9 0.23
32 20 0.51
33 6 0.15
ACGTcount: A:0.12, C:0.07, G:0.18, T:0.63
Consensus pattern (32 bp):
TTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
Found at i:206035055 original size:14 final size:15
Alignment explanation
Indices: 206034990--206035057 Score: 63
Period size: 15 Copynumber: 4.5 Consensus size: 15
206034980 TTTTTTGGTT
206034990 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
206035005 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
206035020 TTTTTTTTGGTGCTGGAA
1 -TTTTTTT--TGCTGGAA
206035038 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
206035050 TTTTTTTT
1 TTTTTTTT
206035058 TTTGCTTCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 10 0.23
15 14 0.32
16 6 0.14
18 3 0.07
19 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:206035503 original size:35 final size:35
Alignment explanation
Indices: 206035463--206035568 Score: 185
Period size: 35 Copynumber: 3.0 Consensus size: 35
206035453 GGGGTGTGTG
*
206035463 ATGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
* *
206035498 GTGGTGCTGGTGGCAGACAGTATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
206035533 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
206035568 A
1 A
206035569 GAGGCAAGTG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 66 1.00
ACGTcount: A:0.23, C:0.11, G:0.49, T:0.17
Consensus pattern (35 bp):
ATGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
Found at i:206036351 original size:48 final size:50
Alignment explanation
Indices: 206036275--206036420 Score: 190
Period size: 53 Copynumber: 2.9 Consensus size: 50
206036265 ATATGACCTA
**
206036275 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
206036323 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC--AA-TAAC
*
206036376 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
206036421 GGAATTGGAA
Statistics
Matches: 84, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
47 1 0.01
48 38 0.45
50 2 0.02
51 1 0.01
52 2 0.02
53 39 0.46
54 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:206036404 original size:53 final size:48
Alignment explanation
Indices: 206036274--206036420 Score: 188
Period size: 48 Copynumber: 3.0 Consensus size: 48
206036264 CATATGACCT
**
206036274 AAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAA
* *
206036322 AAGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACGAAATTA
1 AAGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC--AA--A
*
206036374 ACAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 A-AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
206036421 GGAATTGGAA
Statistics
Matches: 85, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
47 1 0.01
48 39 0.46
50 2 0.02
51 1 0.01
52 2 0.02
53 39 0.46
54 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (48 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAA
Found at i:206036560 original size:70 final size:70
Alignment explanation
Indices: 206036477--206037063 Score: 953
Period size: 70 Copynumber: 8.2 Consensus size: 70
206036467 TCAACTCACC
206036477 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
206036542 CGCCA
66 CGCAA
*
206036547 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
206036612 CACCTCTCGCAA
59 CACCTCTCGCAA
* *
206036624 TATGAGTTGA-TTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGACTTTAACTCACCTC
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGC-TCAACTCACCTC
206036688 TCGCAA
65 TCGCAA
206036694 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
206036759 CGCCA
66 CGCAA
*
206036764 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
206036829 CACCTCTCGCAA
59 CACCTCTCGCAA
*
206036841 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
206036906 CGCAA
66 CGCAA
206036911 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCT-T
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
206036975 CGCAA
66 CGCAA
206036980 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
206037045 CGCAA
66 CGCAA
*
206037050 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
206037064 CTGTCACTTG
Statistics
Matches: 486, Mismatches: 14, Indels: 34
0.91 0.03 0.06
Matches are distributed among these distances:
69 98 0.20
70 209 0.43
71 41 0.08
72 2 0.00
73 1 0.00
74 2 0.00
75 2 0.00
76 8 0.02
77 123 0.25
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (70 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAA
Found at i:206036712 original size:147 final size:140
Alignment explanation
Indices: 206036477--206037063 Score: 953
Period size: 147 Copynumber: 4.1 Consensus size: 140
206036467 TCAACTCACC
206036477 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
206036542 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
206036607 CAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
* *
206036624 TATGAGTTGA-TTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGACTTTAACTCACCTC
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGC-TCAACTCACCTC
206036688 TCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTC
65 TCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTC
*
206036753 ACCTCTCGCCA
130 ACCTCTCGCAA
*
206036764 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
206036829 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
206036894 TAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
206036911 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCT-T
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
206036975 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
206037040 CCTCTCGCAA
131 CCTCTCGCAA
*
206037050 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
206037064 CTGTCACTTG
Statistics
Matches: 418, Mismatches: 13, Indels: 26
0.91 0.03 0.06
Matches are distributed among these distances:
139 88 0.21
140 98 0.23
141 8 0.02
142 2 0.00
143 2 0.00
145 1 0.00
146 41 0.10
147 149 0.36
148 29 0.07
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (140 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAA
Found at i:206036760 original size:217 final size:216
Alignment explanation
Indices: 206036477--206037062 Score: 1062
Period size: 217 Copynumber: 2.7 Consensus size: 216
206036467 TCAACTCACC
206036477 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
206036542 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
206036607 CAACTCACCTCTCGCAATATGAGTTGATTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGA
131 CAACTCACCTCTCGCAATATGAGTTGATTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGA
206036672 GACTTTAACTCACCTCTCGCAA
196 GAC-TTAACTCACCTCTCGCAA
206036694 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
206036759 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
206036824 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGA-TTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
*
206036889 AGGCTTAACTCACCTCTCGCAA
195 AGACTTAACTCACCTCTCGCAA
206036911 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCT-T
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
206036975 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
206037033 CAACTCACCTCTCGCAATGTGAGTTGATTT
131 CAACTCACCTCTCGCAATATGAGTTGATTT
206037063 TCTGTCACTT
Statistics
Matches: 364, Mismatches: 4, Indels: 11
0.96 0.01 0.03
Matches are distributed among these distances:
208 3 0.01
209 57 0.16
211 1 0.00
212 1 0.00
216 24 0.07
217 238 0.65
218 40 0.11
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (216 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGA
GACTTAACTCACCTCTCGCAA
Found at i:206040000 original size:19 final size:20
Alignment explanation
Indices: 206039976--206040017 Score: 77
Period size: 19 Copynumber: 2.1 Consensus size: 20
206039966 CCTCATATTC
206039976 AGTGAACTTTTTG-TGAGGT
1 AGTGAACTTTTTGCTGAGGT
206039995 AGTGAACTTTTTGCTGAGGT
1 AGTGAACTTTTTGCTGAGGT
206040015 AGT
1 AGT
206040018 AGATCGCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.21, C:0.07, G:0.31, T:0.40
Consensus pattern (20 bp):
AGTGAACTTTTTGCTGAGGT
Found at i:206043619 original size:40 final size:40
Alignment explanation
Indices: 206043525--206043669 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
206043515 TACTCGAATG
*
206043525 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGCGACT
* * *
206043566 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGCGACT
* *
206043606 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
*
206043646 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
206043670 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 27 0.29
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGCGACT
Found at i:206044713 original size:30 final size:31
Alignment explanation
Indices: 206044677--206044769 Score: 163
Period size: 30 Copynumber: 3.1 Consensus size: 31
206044667 CCTTTTCATA
206044677 TTTCATATTTCATAATACT-GGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
206044707 TTTCATATTTCAT-ATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
206044737 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
206044768 TT
1 TT
206044770 ACTGTAAACG
Statistics
Matches: 60, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
29 5 0.08
30 37 0.62
31 18 0.30
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:206045025 original size:24 final size:24
Alignment explanation
Indices: 206044961--206045102 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
206044951 GCTTTATCAT
*
206044961 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
206044986 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
206045009 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
206045032 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
206045056 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
206045080 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
206045103 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
23 40 0.36
24 63 0.57
25 8 0.07
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:206045050 original size:47 final size:48
Alignment explanation
Indices: 206044961--206045101 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
206044951 GCTTTATCAT
*
206044961 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
206045009 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
206045056 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
206045102 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
46 12 0.14
47 41 0.47
48 34 0.39
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:206045076 original size:71 final size:71
Alignment explanation
Indices: 206044960--206045102 Score: 218
Period size: 71 Copynumber: 2.0 Consensus size: 71
206044950 TGCTTTATCA
*
206044960 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCAATAACTGGGGCATAAG
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCAATAACTGGGGCATAAG
206045025 CCCTTT
66 CCCTTT
* **
206045031 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTCAATAACTGGGGCATA
206045094 AGCCCTTT
64 AGCCCTTT
206045102 T
1 T
206045103 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
70 21 0.32
71 45 0.68
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:206045178 original size:20 final size:20
Alignment explanation
Indices: 206045153--206045212 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
206045143 TATGATTACC
206045153 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
206045173 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
206045193 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
206045213 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:206045183 original size:11 final size:11
Alignment explanation
Indices: 206045153--206045207 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
206045143 TATGATTACC
206045153 TCATGTGCATA
1 TCATGTGCATA
*
206045164 TCA--TACATA
1 TCATGTGCATA
206045173 TCATGTGCATA
1 TCATGTGCATA
* *
206045184 TCA--TACATT
1 TCATGTGCATA
206045193 TCATGTGCATA
1 TCATGTGCATA
206045204 TCAT
1 TCAT
206045208 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:206045287 original size:25 final size:25
Alignment explanation
Indices: 206045255--206045302 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
206045245 ATACATAAAC
* * *
206045255 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
206045280 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
206045303 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:206052858 original size:30 final size:31
Alignment explanation
Indices: 206052804--206052897 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
206052794 CCTTTTCATA
*
206052804 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
206052835 TTTCATATTTCATATTA-TGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
206052865 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
206052896 TT
1 TT
206052898 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
30 30 0.49
31 31 0.51
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:206053140 original size:24 final size:24
Alignment explanation
Indices: 206053089--206053207 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
206053079 GCTTTATCAT
*
206053089 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
206053114 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
206053138 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
206053161 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
206053185 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
206053208 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:206053168 original size:47 final size:48
Alignment explanation
Indices: 206053089--206053207 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
206053079 GCTTTATCAT
*
206053089 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
206053138 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
206053185 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
206053208 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:206053283 original size:20 final size:20
Alignment explanation
Indices: 206053258--206053317 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
206053248 TATGATTACC
206053258 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
206053278 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
206053298 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
206053318 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:206053288 original size:11 final size:11
Alignment explanation
Indices: 206053258--206053312 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
206053248 TATGATTACC
206053258 TCATGTGCATA
1 TCATGTGCATA
*
206053269 TCA--TACATA
1 TCATGTGCATA
206053278 TCATGTGCATA
1 TCATGTGCATA
* *
206053289 TCA--TACATT
1 TCATGTGCATA
206053298 TCATGTGCATA
1 TCATGTGCATA
206053309 TCAT
1 TCAT
206053313 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:206053392 original size:25 final size:25
Alignment explanation
Indices: 206053360--206053407 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
206053350 ATACATAAAC
* * *
206053360 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
206053385 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
206053408 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:206062722 original size:40 final size:40
Alignment explanation
Indices: 206062628--206062772 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
206062618 TACTCGAATG
*
206062628 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
206062669 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
206062709 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
206062749 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
206062773 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:206079424 original size:78 final size:81
Alignment explanation
Indices: 206079304--206079485 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
206079294 TACTCGTTCA
* *
206079304 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
206079367 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
206079383 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
206079446 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
206079462 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
206079486 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:206079485 original size:40 final size:40
Alignment explanation
Indices: 206079302--206079485 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
206079292 GCTACTCGTT
*
206079302 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
206079342 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
206079382 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
206079420 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
206079461 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
206079486 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:206082990 original size:17 final size:19
Alignment explanation
Indices: 206082961--206082995 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
206082951 GTTGTCAAGG
206082961 AAAAATCGAAAGC-ACACA
1 AAAAATCGAAAGCGACACA
206082979 AAAAATCG-AAGCGACAC
1 AAAAATCGAAAGCGACAC
206082996 CACGATGAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.57, C:0.23, G:0.14, T:0.06
Consensus pattern (19 bp):
AAAAATCGAAAGCGACACA
Found at i:206083481 original size:13 final size:13
Alignment explanation
Indices: 206083460--206083489 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
206083450 ACCATGGGCG
206083460 GTGACACGACCGT
1 GTGACACGACCGT
*
206083473 GTGATACGACCGT
1 GTGACACGACCGT
206083486 GTGA
1 GTGA
206083490 AAATAGAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.20
Consensus pattern (13 bp):
GTGACACGACCGT
Found at i:206087276 original size:24 final size:25
Alignment explanation
Indices: 206087223--206087299 Score: 90
Period size: 24 Copynumber: 3.2 Consensus size: 25
206087213 GGCTATCCGA
* *
206087223 AGCTTCCCG-TTATGGTTCTTTTTG
1 AGCTTCCCGATTATGGCTCTTTATG
* *
206087247 AACTTCCCGATTATGCCTC-TTATG
1 AGCTTCCCGATTATGGCTCTTTATG
206087271 AGCTTCCCGA-TA-GGCTCTTTATG
1 AGCTTCCCGATTATGGCTCTTTATG
206087294 AGCTTC
1 AGCTTC
206087300 TAGAAATGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
22 4 0.09
23 13 0.29
24 21 0.47
25 7 0.16
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.40
Consensus pattern (25 bp):
AGCTTCCCGATTATGGCTCTTTATG
Found at i:206089265 original size:40 final size:40
Alignment explanation
Indices: 206089157--206089366 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
206089147 CGGGATTTAA
* * * * *
206089157 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
206089197 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206089237 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206089277 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206089317 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206089357 CCGGATATAT
1 CCGGATATAT
206089367 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:206097401 original size:40 final size:40
Alignment explanation
Indices: 206097293--206097502 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
206097283 CGGGATTTAA
* * * * *
206097293 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
206097333 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206097373 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206097413 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206097453 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206097493 CCGGATATAT
1 CCGGATATAT
206097503 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:206100780 original size:39 final size:40
Alignment explanation
Indices: 206100726--206100840 Score: 173
Period size: 39 Copynumber: 3.0 Consensus size: 40
206100716 GAAAAAAAAA
206100726 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGC-GGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
206100765 TATAACCGGGTTAAGT-CCGAAGGCATTCATGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
206100804 TATAA-CTGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
206100841 GTTACATCCG
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
38 24 0.35
39 45 0.65
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:206103975 original size:39 final size:39
Alignment explanation
Indices: 206103880--206104021 Score: 151
Period size: 39 Copynumber: 3.6 Consensus size: 39
206103870 ATATCCGGGC
* * *
206103880 TAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC-GGT
* * * *
206103921 CAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGT
* * *
206103960 TAAGTCCCGAAGGCATTTATGCGAGTTACTAAATCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGT
* *
206103999 TAA-TTCCGAAGGCAATTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGA
206104022 ATCACTATAA
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
38 17 0.20
39 38 0.45
40 10 0.12
41 19 0.23
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (39 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGT
Found at i:206104034 original size:77 final size:81
Alignment explanation
Indices: 206103874--206104049 Score: 209
Period size: 77 Copynumber: 2.2 Consensus size: 81
206103864 CGAATGATAT
* * *
206103874 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
206103939 GTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * *
206103955 CC-GGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTAAAT-CGGG-CTAATT-CCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
206104015 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
206104032 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
206104050 ACAATCGAGC
Statistics
Matches: 81, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
77 26 0.32
78 21 0.26
79 10 0.12
80 22 0.27
81 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:206111997 original size:40 final size:40
Alignment explanation
Indices: 206111895--206112075 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 40
206111885 TTCGAATGAT
* * *
206111895 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
206111936 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
206111976 AACCGGGTTAAGTCCCAAAGGCATTTATGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * ***
206112016 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAACCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
206112057 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
206112076 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
40 87 0.75
41 29 0.25
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:206112031 original size:80 final size:81
Alignment explanation
Indices: 206111897--206112047 Score: 216
Period size: 80 Copynumber: 1.9 Consensus size: 81
206111887 CGAATGATAT
* * * *
206111897 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCAAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
206111962 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * *
206111978 CCGGGTTAAGTCCCAAAGGCATTTATGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCAAAGGCATTTATGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
206112041 TGTGCGA
65 TGTGCGA
206112048 ACCACTATAA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.02
80 37 0.60
81 24 0.39
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCAAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:206112060 original size:80 final size:81
Alignment explanation
Indices: 206111897--206112071 Score: 210
Period size: 80 Copynumber: 2.2 Consensus size: 81
206111887 CGAATGATAT
* * * *
206111897 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCAAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
***
206111962 GTGCGAGTTACCAAAA
66 GTGCGAACCACCAAAA
* * *
206111978 CCGGGTTAAGTCCCAAAGGCATTTATGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCAAAGGCATTTATGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
206112041 TGTGCGAACCACTATAA
65 TGTGCGAACCACCAAAA
*
206112058 CCGGGCTATGTCCC
1 CCGGGCTAAGTCCC
206112072 GAAGACAATC
Statistics
Matches: 79, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 54 0.68
81 24 0.30
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCAAAGGCATTTATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAACCACCAAAA
Found at i:206112088 original size:80 final size:80
Alignment explanation
Indices: 206111931--206112115 Score: 178
Period size: 80 Copynumber: 2.3 Consensus size: 80
206111921 GTGCTAAGTG
* *** *
206111931 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCAAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAACCACCAAAACCGGGCTAAGTCCCAAAG
* **
206111996 GCATTTATGCGAGTT
66 ACATCGATGCGAGTT
* * * *
206112011 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAACCACTATAACCGGGCTATGTCCCGAA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAACCACCAAAACCGGGCTAAGTCCCAAA
*
206112075 GACAATCGA-GCGAGTC
65 GAC-ATCGATGCGAGTT
* * * *
206112091 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
206112116 TACGTGATTC
Statistics
Matches: 85, Mismatches: 17, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
79 8 0.09
80 74 0.87
81 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAACCACCAAAACCGGGCTAAGTCCCAAAG
ACATCGATGCGAGTT
Found at i:206119518 original size:29 final size:29
Alignment explanation
Indices: 206119485--206119674 Score: 227
Period size: 29 Copynumber: 6.6 Consensus size: 29
206119475 GTGACGAGAT
206119485 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
206119514 TGGCACTAAGTGTGCGTGTTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
206119543 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
206119572 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ** *
206119601 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
206119630 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
206119659 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
206119675 GGCTTAAATT
Statistics
Matches: 142, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 142 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:206120194 original size:29 final size:29
Alignment explanation
Indices: 206120161--206120269 Score: 209
Period size: 29 Copynumber: 3.8 Consensus size: 29
206120151 GTGACGAGAT
206120161 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
206120190 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
206120219 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
206120248 TGGCACTAAGTGTGCATGCTGG
1 TGGCACTAAGTGTGCGTGCTGG
206120270 GTATGACACT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 79 1.00
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Done.