Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 656 of 770
Found at i:206120307 original size:83 final size:84
Alignment explanation
Indices: 206120157--206120345 Score: 193
Period size: 83 Copynumber: 2.2 Consensus size: 84
206120147 TATGGTGACG
* * ** * *
206120157 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATG
1 AGATATGGCACTAAGTGTGCATGCTGG--A-ATATGACACTAAGTGTGCAAGCTGGAAAAATACG
* *
206120221 GCACTAAGTGTGCGTGCTGGAA
63 GCACTAAGTGTGCGAGCTCGAA
* * *
206120243 ATATATGGCACTAAGTGTGCATGCTGG-GTATGACACTATGTGTGCAAGCTGGAAAAATACGGCA
1 AGATATGGCACTAAGTGTGCATGCTGGAATATGACACTAAGTGTGCAAGCTGGAAAAATACGGCA
**
206120307 CTGGGTGTGCGAGCTCGAA
66 CTAAGTGTGCGAGCTCGAA
* * *
206120326 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
206120346 GGGCTTAAAT
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
83 61 0.72
86 3 0.04
87 21 0.25
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.26
Consensus pattern (84 bp):
AGATATGGCACTAAGTGTGCATGCTGGAATATGACACTAAGTGTGCAAGCTGGAAAAATACGGCA
CTAAGTGTGCGAGCTCGAA
Found at i:206120321 original size:29 final size:29
Alignment explanation
Indices: 206120161--206120346 Score: 184
Period size: 29 Copynumber: 6.6 Consensus size: 29
206120151 GTGACGAGAT
*
206120161 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
*
206120190 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
*
206120219 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
*
206120248 TGGCACTAAGTGTGC-ATGCTGG----GTA
1 TGGCACTAAGTGTGCGA-GCTGGAAATATA
* * * *
206120273 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** * ***
206120302 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
*
206120331 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
206120347 GGCTTAAATT
Statistics
Matches: 134, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
25 20 0.15
26 1 0.01
29 113 0.84
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:206124327 original size:27 final size:28
Alignment explanation
Indices: 206124297--206124366 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
206124287 ATAATAAGTC
*
206124297 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
206124324 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
206124352 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
206124367 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:206132258 original size:27 final size:28
Alignment explanation
Indices: 206132228--206132297 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
206132218 ATAATAAGTC
*
206132228 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
206132255 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
206132283 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
206132298 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:206135023 original size:19 final size:19
Alignment explanation
Indices: 206134994--206135037 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
206134984 AACTTAAAAT
206134994 TTTACTTAAATTTGTTTATA
1 TTTA-TTAAATTTGTTTATA
206135014 TTTATTAAATTTGTTTATA
1 TTTATTAAATTTGTTTATA
206135033 TTTAT
1 TTTAT
206135038 AAGTGGCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (19 bp):
TTTATTAAATTTGTTTATA
Found at i:206135115 original size:23 final size:23
Alignment explanation
Indices: 206135089--206135135 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
206135079 TTTTTAAAAA
206135089 AATATTCATATTAT-TTTTAATTT
1 AATATTCA-ATTATATTTTAATTT
* *
206135112 AATATTTAATTATATTTTTATTT
1 AATATTCAATTATATTTTAATTT
206135135 A
1 A
206135136 TTAAGATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (23 bp):
AATATTCAATTATATTTTAATTT
Found at i:206135312 original size:18 final size:17
Alignment explanation
Indices: 206135272--206135314 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
206135262 ATACTATTTC
* *
206135272 TTTTTCTTTTTTCTAAA
1 TTTTTCTTTTTGCAAAA
206135289 TCTTTTCTTTTTGCAATAA
1 T-TTTTCTTTTTGCAA-AA
206135308 TTTTTCT
1 TTTTTCT
206135315 CAATCTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 18 0.82
19 3 0.14
ACGTcount: A:0.16, C:0.14, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTTTCTTTTTGCAAAA
Found at i:206135772 original size:18 final size:18
Alignment explanation
Indices: 206135744--206135790 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
206135734 AATACAACCC
206135744 AAAAT-AAAAAATAAAAA
1 AAAATAAAAAAATAAAAA
* *
206135761 AAAATAAAAAAATGAAGA
1 AAAATAAAAAAATAAAAA
*
206135779 AAAAGAAAAAAA
1 AAAATAAAAAAA
206135791 CCTAATCTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 5 0.19
18 21 0.81
ACGTcount: A:0.85, C:0.00, G:0.06, T:0.09
Consensus pattern (18 bp):
AAAATAAAAAAATAAAAA
Found at i:206136979 original size:19 final size:19
Alignment explanation
Indices: 206136955--206137011 Score: 105
Period size: 19 Copynumber: 3.0 Consensus size: 19
206136945 TTGAGATTGC
206136955 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCTTGAAAT
206136974 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCTTGAAAT
*
206136993 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCTTGAAAT
206137012 TATTCATTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.35
Consensus pattern (19 bp):
CAACCTATTTGCTTGAAAT
Found at i:206147898 original size:47 final size:46
Alignment explanation
Indices: 206147847--206147994 Score: 123
Period size: 47 Copynumber: 3.3 Consensus size: 46
206147837 TCAGGCAGGG
206147847 AGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
1 AGCAGATC-AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
* * * * * *
206147894 AGCAGATC----CA-AGATGATTTGGC-ATCTC-TGTATCAGGCG-GGG
1 AGCAGATCAAGACATAGCTGATTTGGCTTTCACGTGT-TTA--CGTTGA
206147935 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
1 AGCAGATC-AAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
*
206147982 AGCAAATCCAAGA
1 AGCAGAT-CAAGA
206147995 TGATTTGGCG
Statistics
Matches: 75, Mismatches: 13, Indels: 26
0.66 0.11 0.23
Matches are distributed among these distances:
39 3 0.04
40 5 0.07
41 20 0.27
42 4 0.05
46 4 0.05
47 30 0.40
48 6 0.08
49 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (46 bp):
AGCAGATCAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
Found at i:206147960 original size:88 final size:88
Alignment explanation
Indices: 206147811--206148034 Score: 369
Period size: 88 Copynumber: 2.6 Consensus size: 88
206147801 AGCTGAAGAT
* * *
206147811 ATCCAAGATGATTTGGCATTTTTGTATCAGGCAGGGAGCAGATCAAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCT
*
206147876 TTCACGTGTTTACGTTGAAGCAG
66 TTCACGTGTTTACGTTGAAGCAA
*
206147899 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCT
206147964 TTCACGTGTTTACGTTGAAGCAA
66 TTCACGTGTTTACGTTGAAGCAA
* * *
206147987 ATCCAAGATGATTTGGCGTCTCTGTAGC-GGCAGAGAGCAGATCGAAGA
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCAGGGAGCAGATCGAAGA
206148035 TAACAGATTT
Statistics
Matches: 127, Mismatches: 9, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
87 18 0.14
88 109 0.86
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (88 bp):
ATCCAAGATGATTTGGCATCTCTGTATCAGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCT
TTCACGTGTTTACGTTGAAGCAA
Found at i:206148050 original size:44 final size:44
Alignment explanation
Indices: 206147996--206148768 Score: 895
Period size: 44 Copynumber: 17.4 Consensus size: 44
206147986 AATCCAAGAT
*
206147996 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206148040 GATTTGGCGTCTCTATAGCGGCAGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206148080 GATTTGGCATCTCTGTAGTGGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206148120 GATTTGGCATCTCTGTAGCAGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
206148164 GATTTGGCATCTATGTAGCGGCGGAGAGCAAATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206148208 GATTTGGCGTCTCTGTAGCGGCGGAAAGCAGATCGAAGATAAAA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * * *
206148252 GATTTGGCGTGTTTGTAGCGGTGGAGAGCAGATCGAAGGTAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
206148296 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206148340 GATTTGGTGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206148384 GATTTGGCATCCCTGTAGCGGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
206148424 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** *
206148468 GATTTGGTGTCTCCATAGCGGCGGAGAGCAGATCGAAAATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * **** * ** *
206148512 TATTTGGAGTCTCTTCGGATAATAGATTTGGCGTCTCCGTAGCGGCGAAGAGCAGATCGAAGA
1 GATTTGGCGTCTC-T--G----TAG---CGGCG-GAGAGCAG-ATCGAAGA-----T--AACA
* *
206148575 TGATTTGGCATCTCTGTAGAGGCGGAGAGCAGATCGAAGATAACA
1 -GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206148620 GATTTGGCGTCTCTGTAGCGGCGGAGATCGGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
206148664 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206148708 GATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
206148752 GATTTGGCGTCTCTGTA
1 GATTTGGCGTCTCTGTA
206148769 TTAGACGGGG
Statistics
Matches: 629, Mismatches: 72, Indels: 56
0.83 0.10 0.07
Matches are distributed among these distances:
40 113 0.18
44 465 0.74
45 3 0.00
47 1 0.00
51 3 0.00
52 6 0.01
53 3 0.00
54 8 0.01
55 3 0.00
56 5 0.01
57 3 0.00
61 2 0.00
63 4 0.01
64 10 0.02
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.23
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:206148093 original size:84 final size:85
Alignment explanation
Indices: 206147894--206148768 Score: 766
Period size: 88 Copynumber: 9.9 Consensus size: 85
206147884 TTTACGTTGA
* * * * *
206147894 AGCAGATCCAAGAT-GATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGAT
1 AGCAGATCGAAGATAGATTTGGCATCTCTGTAGC-GGCGGAGAGCAGATCGAAG--ATAACAGAT
* * **
206147958 TTGGCTTTCACGTGTTTA-C-GTTGA-
63 TTGGC-GTCTC-TG--TAGCGGCGGAG
* * * *
206147982 AGCAAATCCAAGAT-GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTG
1 AGCAGATCGAAGATAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTG
* *
206148046 GCGTCTCTATAGCGGCAGAG
66 GCGTCTCTGTAGCGGCGGAG
*
206148066 AGCAGATCGAAGAT-GATTTGGCATCTCTGTAGTGGCGGAGAGCAGATCGAAGAT----GATTTG
1 AGCAGATCGAAGATAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTG
* *
206148126 GCATCTCTGTAGCAGCGGAG
66 GCGTCTCTGTAGCGGCGGAG
* *
206148146 AGCAGATCGAAGATAACAGATTTGGCATCTATGTAGCGGCGGAGAGCAAATCGAAGATAACAGAT
1 AGCAGATCGAAGAT---AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGAT
*
206148211 TTGGCGTCTCTGTAGCGGCGGAA
63 TTGGCGTCTCTGTAGCGGCGGAG
* * * * * *
206148234 AGCAGATCGAAGATAAAAGATTTGGCGTGTTTGTAGCGGTGGAGAGCAGATCGAAGGTAGCAGAT
1 AGCAGATCGAAGAT---AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGAT
206148299 TTGGCGTCTCTGTAGCGGCGGAG
63 TTGGCGTCTCTGTAGCGGCGGAG
** *
206148322 AGCAGATCGAAGATAACAGATTTGGTGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAATAGAT
1 AGCAGATCGAAGAT---AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGAT
* *
206148387 TTGGCATCCCTGTAGCGGCGGAG
63 TTGGCGTCTCTGTAGCGGCGGAG
206148410 AGCAGATCGAAGAT-GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTG
1 AGCAGATCGAAGATAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTG
* **
206148474 GTGTCTCCATAGCGGCGGAG
66 GCGTCTCTGTAGCGGCGGAG
* * * **** * **
206148494 AGCAGATCGAAAATAACATATTTGG-AGTCTCTTCGGATAATAGATTTGGCGTCTCCGTAGCGGC
1 AGCAGATCGAAGAT---AGATTTGGCA-TCTC-T--G----TAG---CGGCG-GAGAGCAG-ATC
* * *
206148558 GAAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGAGGCGGAG
50 GAAGA-----T--AACA-GATTTGGCGTCTCTGTAGCGGCGGAG
* * *
206148602 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGATCGGATCGAAGATAACAGAT
1 AGCAGATCGAAGAT---AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGAT
206148667 TTGGCGTCTCTGTAGCGGCGGAG
63 TTGGCGTCTCTGTAGCGGCGGAG
* * *
206148690 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGTGGAGAGCAGATCGAAGATAACGGAT
1 AGCAGATCGAAGAT---AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGAT
206148755 TTGGCGTCTCTGTA
63 TTGGCGTCTCTGTA
206148769 TTAGACGGGG
Statistics
Matches: 660, Mismatches: 90, Indels: 74
0.80 0.11 0.09
Matches are distributed among these distances:
80 36 0.05
81 2 0.00
82 1 0.00
83 4 0.01
84 164 0.25
85 12 0.02
87 18 0.03
88 333 0.50
89 4 0.01
91 2 0.00
95 3 0.00
96 6 0.01
97 1 0.00
98 8 0.01
99 3 0.00
100 6 0.01
101 3 0.00
105 2 0.00
107 4 0.01
108 48 0.07
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (85 bp):
AGCAGATCGAAGATAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTG
GCGTCTCTGTAGCGGCGGAG
Found at i:206148625 original size:108 final size:109
Alignment explanation
Indices: 206148424--206148633 Score: 287
Period size: 108 Copynumber: 1.9 Consensus size: 109
206148414 GATCGAAGAT
* * ** *
206148424 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCCATAGCGG
1 GATTTGGCATCTCCGTAGCGGCGAAGAGCAGATCGAAGAT---AGATTTGGCATCTCCATAGAGG
*
206148489 CGGAGAGCAGATCGAAAATAACATATTTGGAGTCTCTTCGGATAATA
63 CGGAGAGCAGATCGAAAATAACAGATTTGGAGTCTCTTCGGATAATA
* **
206148536 GATTTGGCGTCTCCGTAGCGGCGAAGAGCAGATCGAAGAT-GATTTGGCATCTCTGTAGAGGCGG
1 GATTTGGCATCTCCGTAGCGGCGAAGAGCAGATCGAAGATAGATTTGGCATCTCCATAGAGGCGG
* *
206148600 AGAGCAGATCGAAGATAACAGATTTGGCGTCTCT
66 AGAGCAGATCGAAAATAACAGATTTGGAGTCTCT
206148634 GTAGCGGCGG
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
108 50 0.57
112 37 0.43
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (109 bp):
GATTTGGCATCTCCGTAGCGGCGAAGAGCAGATCGAAGATAGATTTGGCATCTCCATAGAGGCGG
AGAGCAGATCGAAAATAACAGATTTGGAGTCTCTTCGGATAATA
Found at i:206148654 original size:152 final size:152
Alignment explanation
Indices: 206148377--206148677 Score: 487
Period size: 152 Copynumber: 2.0 Consensus size: 152
206148367 GCAGATCGAA
*
206148377 GATAATAGATTTGGCATCCCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAG
1 GATAATAGATTTGGCATCCCTGTAGCGGCGAAGAGCAGATCGAAGATGATTTGGCATCTCTGTAG
* *
206148442 CGGCGGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCCATAGCGGCGGAGAGCAGATCGAAAA
66 AGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCATAGCGGCGGAGAGCAGATCGAAAA
*
206148507 TAACATATTTGGAGTCTCTTCG
131 TAACAGATTTGGAGTCTCTTCG
*
206148529 GATAATAGATTTGGCGTCTCC-GTAGCGGCGAAGAGCAGATCGAAGATGATTTGGCATCTCTGTA
1 GATAATAGATTTGGCATC-CCTGTAGCGGCGAAGAGCAGATCGAAGATGATTTGGCATCTCTGTA
** * * *
206148593 GAGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGATCGGATCGAAG
65 GAGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCATAGCGGCGGAGAGCAGATCGAAA
*
206148658 ATAACAGATTTGGCGTCTCT
130 ATAACAGATTTGGAGTCTCT
206148678 GTAGCGGCGG
Statistics
Matches: 137, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
152 135 0.99
153 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (152 bp):
GATAATAGATTTGGCATCCCTGTAGCGGCGAAGAGCAGATCGAAGATGATTTGGCATCTCTGTAG
AGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCCATAGCGGCGGAGAGCAGATCGAAAA
TAACAGATTTGGAGTCTCTTCG
Found at i:206148685 original size:196 final size:194
Alignment explanation
Indices: 206148333--206148721 Score: 575
Period size: 196 Copynumber: 2.0 Consensus size: 194
206148323 GCAGATCGAA
* * *
206148333 GATAACAGATTTGGTGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAATAGATTTGGCATCCCT
1 GATAACAGATTTGGCGTCTCCGTAGCGGCGAAGAGCAGATCGAAG--AATAGATTTGGCATCCCT
*
206148398 GTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGA
64 GTAGAGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGA
* *
206148463 TAACAGATTTGGTGTCTCCATAGCGGCGGAGAGCAGATCGAAAATAACATATTTGGAGTCTCTTC
129 TAACAGATTTGGCGTCTCCATAGCGGCGGAGAGCAGATCGAAAATAACAGATTTGGAGTCTCTTC
206148528 G
194 G
* *
206148529 GATAATAGATTTGGCGTCTCCGTAGCGGCGAAGAGCAGATCGAAG-AT-GATTTGGCATCTCTGT
1 GATAACAGATTTGGCGTCTCCGTAGCGGCGAAGAGCAGATCGAAGAATAGATTTGGCATCCCTGT
* * *
206148592 AGAGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGATCGGATCGAA
66 AGAGGCGGAGAGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAA
** * *
206148657 GATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCT
127 GATAACAGATTTGGCGTCTCCATAGCGGCGGAGAGCAGATCGAAAATAACAGATTTGGAGTCTCT
206148722 GTAGCGGTGG
Statistics
Matches: 174, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
192 38 0.22
193 2 0.01
196 134 0.77
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (194 bp):
GATAACAGATTTGGCGTCTCCGTAGCGGCGAAGAGCAGATCGAAGAATAGATTTGGCATCCCTGT
AGAGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATA
ACAGATTTGGCGTCTCCATAGCGGCGGAGAGCAGATCGAAAATAACAGATTTGGAGTCTCTTCG
Found at i:206150288 original size:19 final size:19
Alignment explanation
Indices: 206150264--206150301 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
206150254 TTGAGATTGC
*
206150264 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
206150283 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
206150302 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:206160220 original size:47 final size:46
Alignment explanation
Indices: 206160169--206160316 Score: 116
Period size: 47 Copynumber: 3.3 Consensus size: 46
206160159 TCAGGCGGGG
206160169 AGCAGATCAAAGACATAGCTGATTTGGCTCTCACGTGTTTACGTTGA
1 AGCAGATC-AAGACATAGCTGATTTGGCTCTCACGTGTTTACGTTGA
* * * *
206160216 AGCAGATC----CA-AGATGATTTGGCATCT--C-TGTATCAGGCG-GGG
1 AGCAGATCAAGACATAGCTGATTTGGC-TCTCACGTGT-TTA--CGTTGA
*
206160257 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
1 AGCAGATC-AAGACATAGCTGATTTGGCTCTCACGTGTTTACGTTGA
*
206160304 AGCAAATCCAAGA
1 AGCAGAT-CAAGA
206160317 TGATTTGGCG
Statistics
Matches: 76, Mismatches: 10, Indels: 30
0.66 0.09 0.26
Matches are distributed among these distances:
39 3 0.04
40 3 0.04
41 20 0.26
42 7 0.09
46 6 0.08
47 30 0.39
48 4 0.05
49 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (46 bp):
AGCAGATCAAGACATAGCTGATTTGGCTCTCACGTGTTTACGTTGA
Found at i:206160282 original size:88 final size:88
Alignment explanation
Indices: 206160133--206160356 Score: 360
Period size: 88 Copynumber: 2.6 Consensus size: 88
206160123 AGCTGAAGAT
* * *
206160133 ATCCAAGATGATTTGGCATTTTTGTATCAGGCGGGGAGCAGATCAAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
*
206160198 CTCACGTGTTTACGTTGAAGCAG
66 CTCACGTGTTTACGTTGAAGCAA
206160221 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
*
206160286 TTCACGTGTTTACGTTGAAGCAA
66 CTCACGTGTTTACGTTGAAGCAA
* * * *
206160309 ATCCAAGATGATTTGGCGTCTCTGTAGC-GGCAGAGAGCAGATCGAAGA
1 ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGA
206160357 TAACAGATTT
Statistics
Matches: 127, Mismatches: 9, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
87 18 0.14
88 109 0.86
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (88 bp):
ATCCAAGATGATTTGGCATCTCTGTATCAGGCGGGGAGCAGATCGAAGACATAGCTGATTTGGCT
CTCACGTGTTTACGTTGAAGCAA
Found at i:206160372 original size:44 final size:44
Alignment explanation
Indices: 206160318--206161115 Score: 1161
Period size: 44 Copynumber: 18.4 Consensus size: 44
206160308 AATCCAAGAT
*
206160318 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
206160362 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206160406 GATTTGGCATCTCTGTAGTGGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
*
206160446 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
206160490 GATTTGGCATCTATGTAGCGGCGGAGAGCAAATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
206160534 GATTTGGCGTCTCTGTAGCGGCAGAAAGCAGATCGAAGATAAAA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
206160578 GATTTGGCGTCTCTATAGCGGCGCAAAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
206160622 GATTTGGCGTCTCTGTAG-GGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206160665 GATTTGGTGTCTCTG-AGTGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206160708 GATTTGGCATCTCTGTAACGGCGGAGAGCAGATCGAAGAT----
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206160748 GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
206160792 GATTTGGCATCTCCGTAGCGGCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206160836 GATTTGGTGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206160880 AATTTGGCGTCTCTGTAGAGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
206160924 GATTTGACGTCTCTGTAGCTGTGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * * *
206160968 AATTTGGCGTCTCCGTAGCGGTGGAAAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206161012 GATTTGGTGT-TCTGTAGCGGCGAAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* *
206161055 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGGTCGAAGATAA-T
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
206161098 GAATTTGGCGTCTCTGTA
1 G-ATTTGGCGTCTCTGTA
206161116 TTAGACGGGG
Statistics
Matches: 682, Mismatches: 60, Indels: 24
0.89 0.08 0.03
Matches are distributed among these distances:
40 77 0.11
42 2 0.00
43 113 0.17
44 490 0.72
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.22
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:206160741 original size:302 final size:304
Alignment explanation
Indices: 206160318--206161096 Score: 1217
Period size: 302 Copynumber: 2.6 Consensus size: 304
206160308 AATCCAAGAT
*
206160318 GATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
*
206160383 CGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGTGGCGGAGAGCAGATCGAAGATGA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGA
* *
206160448 TTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTATGTAGCGGCG
131 TTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTACGTAGCGGCA
206160513 GAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCAGAA-AGCAGATCGAAGATAA-
196 GAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGC-GAAGAGCAGATCGAAGATAAC
* *
206160576 AAGATTTGGCGTCTCTATAGCGGCGCAAAGCAGATCGAAGATAGCA
260 AA-ATTTGGCGTCTCTATAGAGGCGCAAAGCAGATCGAAGATAACA
* *
206160622 GATTTGGCGTCTCTGTAG-GGCGGAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTG-AGTGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
*
206160685 CGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAACGGCGGAGAGCAGATCGAAGATGA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGA
* *
206160750 TTTGGCATCTCTGTAGCGGCGGAGAGCAGATCAAAGATAACAGATTTGGCATCTCCGTAGCGGCA
131 TTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTACGTAGCGGCA
* *
206160815 GAGAGCAGATCGAAGATAACAGATTTGGTGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACA
196 GAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACA
* * *
206160880 AATTTGGCGTCTCTGTAGAGGCGGAGAGCAGATCGAAGATAACA
261 AATTTGGCGTCTCTATAGAGGCGCAAAGCAGATCGAAGATAACA
* * * * *
206160924 GATTTGACGTCTCTGTAGCTGTGGAGAGCAGATCGAAGATAACAAATTTGGCGTCTCCGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
* * ** *
206160989 TGGAAAGCAGATCGAAGATAACAGATTTGGTGT-TCTGTAGCGGCGAAGAGCAGATCGAAGATAA
66 CGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGAT--
* *
206161053 CAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGGTCGAAGATAA
129 --GATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
206161097 TGAATTTGGC
Statistics
Matches: 435, Mismatches: 32, Indels: 13
0.91 0.07 0.03
Matches are distributed among these distances:
301 3 0.01
302 240 0.55
303 102 0.23
304 51 0.12
307 39 0.09
ACGTcount: A:0.30, C:0.17, G:0.32, T:0.21
Consensus pattern (304 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
CGGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATGA
TTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCATCTACGTAGCGGCA
GAGAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGAAGAGCAGATCGAAGATAACA
AATTTGGCGTCTCTATAGAGGCGCAAAGCAGATCGAAGATAACA
Found at i:206161430 original size:9 final size:8
Alignment explanation
Indices: 206161406--206161450 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
206161396 AATACAACCC
206161406 AAAAT-AA
1 AAAATAAA
206161413 AAAATAAA
1 AAAATAAA
206161421 AAAATAAA
1 AAAATAAA
206161429 AAAATGAAGA
1 AAAAT-AA-A
*
206161439 AAAAGAAA
1 AAAATAAA
206161447 AAAA
1 AAAA
206161451 CCTAACCTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
7 5 0.15
8 20 0.59
9 4 0.12
10 5 0.15
ACGTcount: A:0.84, C:0.00, G:0.07, T:0.09
Consensus pattern (8 bp):
AAAATAAA
Found at i:206161713 original size:16 final size:16
Alignment explanation
Indices: 206161685--206161728 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
206161675 TTGTATTCCC
206161685 TTTGTTCATTTTTCATT
1 TTTGTT-ATTTTTCATT
*
206161702 TTTGTTATTTTTTATT
1 TTTGTTATTTTTCATT
206161718 TTAT-TTATTTT
1 TT-TGTTATTTT
206161729 ATATATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.77
Consensus pattern (16 bp):
TTTGTTATTTTTCATT
Found at i:206161733 original size:2 final size:2
Alignment explanation
Indices: 206161728--206161757 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
206161718 TTATTTATTT
206161728 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
206161758 CATAATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:206162656 original size:19 final size:19
Alignment explanation
Indices: 206162632--206162669 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
206162622 TTGAGATTGC
*
206162632 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
206162651 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
206162670 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:206164020 original size:25 final size:25
Alignment explanation
Indices: 206163992--206164042 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
206163982 GTACAATGAG
206163992 AAAGGTTTGTGAACTTATAATGCTT
1 AAAGGTTTGTGAACTTATAATGCTT
206164017 AAAGGTTTGTGAACTTATAATGCTT
1 AAAGGTTTGTGAACTTATAATGCTT
206164042 A
1 A
206164043 CTCATAGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AAAGGTTTGTGAACTTATAATGCTT
Found at i:206166099 original size:29 final size:29
Alignment explanation
Indices: 206166065--206166139 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
206166055 TACTCGATTT
* *
206166065 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATGCCATTCAAGCC
* * * *
206166094 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCCATTCAAGCC
206166123 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
206166140 ATATTCCAGC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.23, C:0.35, G:0.20, T:0.23
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCCATTCAAGCC
Found at i:206166166 original size:27 final size:29
Alignment explanation
Indices: 206166123--206166194 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 29
206166113 CCTTCGAGCT
206166123 CGCACACTTAGTGCCATA-TATTCCAGCA
1 CGCACACTTAGTGCCATATTATTCCAGCA
* *
206166151 TGCACAC-TAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATTATTCCAGCA
206166179 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
206166195 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 10 0.26
28 21 0.54
29 8 0.21
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATTATTCCAGCA
Found at i:206175226 original size:70 final size:71
Alignment explanation
Indices: 206175143--206175305 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
206175133 CGATTTGTCT
206175143 CGTAGCTCTCTTGTCTACATGGTGTCC-TCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
206175207 CTTTCA
66 CTTTCA
*
206175213 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
206175278 CTTTCA
66 CTTTCA
206175284 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
206175306 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 27 0.30
71 64 0.70
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:206175343 original size:71 final size:70
Alignment explanation
Indices: 206175143--206175339 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
206175133 CGATTTGTCT
* * * *
206175143 CGTAGCTCTCTTGTCTACATGGTGT-CCTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
206175207 CTTTCA
65 CTTTCA
* * * *
206175213 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
206175278 CTTTCA
65 CTTTCA
* *
206175284 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
206175340 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 26 0.22
71 68 0.58
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:206181468 original size:40 final size:40
Alignment explanation
Indices: 206181404--206181611 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
206181394 TCTTCGAAAT
* ** *
206181404 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
206181443 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
206181483 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
206181523 TTAGCCTGGATATAATAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * * *
206181563 TTAGCCCGAATATAATC-ACTAGCATAAATGCCTTCAGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
206181603 TTAGCCCGG
1 TTAGCCCGG
206181612 GTATCATTCA
Statistics
Matches: 147, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 3 0.02
40 144 0.98
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:206184308 original size:12 final size:12
Alignment explanation
Indices: 206184291--206184315 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
206184281 TGCTCATATA
206184291 TAATCATACATC
1 TAATCATACATC
206184303 TAATCATACATC
1 TAATCATACATC
206184315 T
1 T
206184316 CACAGGGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (12 bp):
TAATCATACATC
Found at i:206185733 original size:45 final size:46
Alignment explanation
Indices: 206185615--206185742 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
206185605 ATGTTTGGCA
*
206185615 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
206185661 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
206185706 -CCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
206185743 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
44 2 0.03
45 35 0.45
46 41 0.53
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:206188745 original size:29 final size:29
Alignment explanation
Indices: 206188659--206188742 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
206188649 CATAGTATCG
* * * *
206188659 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGG-TTTCTC
206188689 TAT-TCTGGATTTCTTTATTCTGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGTTTCTC
206188718 TATCTTGGATTTCTTTATTC-GGTTT
1 TATCTTGGATTTCTTTATTCTGGTTT
206188743 TCTTATTATC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.10
29 23 0.48
30 20 0.42
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGTTTCTC
Found at i:206188746 original size:14 final size:15
Alignment explanation
Indices: 206188668--206188746 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
206188658 GTATCTTGGG
*
206188668 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
206188683 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
206188698 TTTCTTTATTCTGG-
1 TTTCTTTATTCTGGA
*
206188712 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
206188727 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
206188741 TTTCTT
1 TTTCTT
206188747 ATTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
13 2 0.04
14 18 0.33
15 33 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:206188770 original size:12 final size:12
Alignment explanation
Indices: 206188753--206188781 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
206188743 TCTTATTATC
206188753 TTTGTTCCATAA
1 TTTGTTCCATAA
206188765 TTTGTTCCATAA
1 TTTGTTCCATAA
206188777 TTTGT
1 TTTGT
206188782 CAATTATGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.21, C:0.14, G:0.10, T:0.55
Consensus pattern (12 bp):
TTTGTTCCATAA
Found at i:206191193 original size:46 final size:46
Alignment explanation
Indices: 206191143--206191271 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
206191133 TGTTTGGGCA
* *
206191143 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
206191189 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
* *
206191235 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
206191272 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
Found at i:206194261 original size:14 final size:14
Alignment explanation
Indices: 206194188--206194262 Score: 75
Period size: 14 Copynumber: 5.4 Consensus size: 14
206194178 GTATCTTGGG
*
206194188 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
206194203 -TTCTTTATTCTGGA
1 TTTCTTTATTC-GGA
206194217 TTTCTTTATTCGG-
1 TTTCTTTATTCGGA
*
206194230 TTTCTCTTCTT-GGA
1 TTTCT-TTATTCGGA
*
206194244 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
206194258 TTTCT
1 TTTCT
206194263 ATATCTTTGT
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
13 11 0.21
14 31 0.60
15 10 0.19
ACGTcount: A:0.09, C:0.17, G:0.13, T:0.60
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:206194439 original size:19 final size:19
Alignment explanation
Indices: 206194411--206194454 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
206194401 ATTTCTGTGT
206194411 AAGG-ATTTGACATCAGTA
1 AAGGCATTTGACATCAGTA
206194429 AAGGCATTTGACATCAGTA
1 AAGGCATTTGACATCAGTA
206194448 AAGGCAT
1 AAGGCAT
206194455 AGGTGATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.25
Consensus pattern (19 bp):
AAGGCATTTGACATCAGTA
Found at i:206202552 original size:24 final size:25
Alignment explanation
Indices: 206202516--206202565 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
206202506 TCAAACATGC
206202516 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCC-AGGGGT
*
206202542 ATTT-GGT-AATTTATCCCAGGGGT
1 ATTTAGGTCAATTTAACCCAGGGGT
206202565 A
1 A
206202566 AAACTGTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 7 0.30
24 9 0.39
25 3 0.13
26 4 0.17
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (25 bp):
ATTTAGGTCAATTTAACCCAGGGGT
Found at i:206204059 original size:32 final size:32
Alignment explanation
Indices: 206204022--206204118 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
206204012 AATGCTTATC
206204022 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
206204054 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
206204086 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
206204118 A
1 A
206204119 AATGCATACA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:206208970 original size:12 final size:12
Alignment explanation
Indices: 206208953--206208983 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
206208943 AGTACTACCT
206208953 CGGCCTCGACCA
1 CGGCCTCGACCA
206208965 CGGCCTCGACCA
1 CGGCCTCGACCA
206208977 CGGCCTC
1 CGGCCTC
206208984 TTCCCCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:206212161 original size:32 final size:32
Alignment explanation
Indices: 206212124--206212220 Score: 185
Period size: 32 Copynumber: 3.0 Consensus size: 32
206212114 AATGCTTATC
206212124 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
206212156 ATGCCCATCATTCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
206212188 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
206212220 A
1 A
206212221 AATGCATACA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 63 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:206218731 original size:25 final size:25
Alignment explanation
Indices: 206218703--206218750 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
206218693 AAAGCTTAAT
*
206218703 TAATTTAACTTAA-TTAATCTAATTA
1 TAATTTAA-TTAACTTAAACTAATTA
206218728 TAATTTAATTAACTTAAACTAAT
1 TAATTTAATTAACTTAAACTAAT
206218751 CATTAATCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (25 bp):
TAATTTAATTAACTTAAACTAATTA
Found at i:206223852 original size:21 final size:21
Alignment explanation
Indices: 206223826--206223866 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
206223816 ATCTGCTCAA
* *
206223826 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
206223847 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
206223867 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:206229339 original size:26 final size:27
Alignment explanation
Indices: 206229303--206229372 Score: 99
Period size: 26 Copynumber: 2.6 Consensus size: 27
206229293 AAAATTGTAC
206229303 AGCACTAAGTGTGCGAGTTTG-AT-TAT
1 AGCACTAAGTGTGCGAG-TTGAATATAT
206229329 AGCACTAAGTGTGCGAGTTGAATACATAT
1 AGCACTAAGTGTGCGAGTTGAAT--ATAT
206229358 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
206229373 GATTCACTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
25 3 0.08
26 19 0.47
29 18 0.45
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGAATATAT
Found at i:206232787 original size:40 final size:39
Alignment explanation
Indices: 206232742--206232949 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
206232732 CGGAATACAA
*
206232742 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
206232782 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
206232822 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
206232862 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTCAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * *
206232902 CCGGATATAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
206232942 CCGGATAT
1 CCGGATAT
206232950 CATTCAATTG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 1 0.01
40 138 0.99
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:206232882 original size:80 final size:81
Alignment explanation
Indices: 206232742--206232947 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
206232732 CGGAATACAA
* * *
206232742 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
* *
206232806 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATCAAC
* * *
206232822 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
206232885 TGCCTTCGGGTCTCAAC
65 TGCCTTCGGGTATCAAC
* * ** * *
206232902 CCGGATATAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
206232948 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATCAAC
Found at i:206241864 original size:28 final size:29
Alignment explanation
Indices: 206241810--206241871 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
206241800 GAAAGCATGT
*
206241810 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
* *
206241839 ATATGAATGAGA-TTGGGCCTAGTGGGTC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
206241867 ATATG
1 ATATG
206241872 CACGTATGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.26, C:0.11, G:0.32, T:0.31
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATGGGCC
Found at i:206256804 original size:40 final size:40
Alignment explanation
Indices: 206256746--206256846 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
206256736 AAATTGAATG
* * **
206256746 ATATCTGGGCTAAG-CCCGAAGACAATTATGCTGGAATTT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAGCT
* * * **
206256785 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAGCT
206256825 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
206256847 GCATTCGTGC
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
39 12 0.24
40 39 0.76
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAGCT
Found at i:206256847 original size:40 final size:40
Alignment explanation
Indices: 206256784--206256912 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
206256774 TGCTGGAATT
* * *
206256784 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
206256824 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * *
206256864 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ATGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
206256904 TATATCCGG
1 TATATCCGG
206256913 TATATTCCGA
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:206261899 original size:70 final size:71
Alignment explanation
Indices: 206261817--206261979 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
206261807 CGATTTGTCT
206261817 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCG-CCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
206261881 CTTTCA
66 CTTTCA
206261887 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
206261952 CTTTCA
66 CTTTCA
206261958 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
206261980 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 49 0.53
71 43 0.47
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:206262017 original size:71 final size:70
Alignment explanation
Indices: 206261817--206262013 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
206261807 CGATTTGTCT
* * * *
206261817 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCG-CCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
206261881 CTTTCA
65 CTTTCA
* * * *
206261887 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
206261952 CTTTCA
65 CTTTCA
* *
206261958 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
206262014 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 50 0.42
71 46 0.39
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:206265575 original size:39 final size:39
Alignment explanation
Indices: 206265527--206265675 Score: 183
Period size: 39 Copynumber: 3.8 Consensus size: 39
206265517 GCTACTCGTT
* * * ** *
206265527 CAAACGCCTTCGGGACATAGCCCGGTTAT-GGAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
*
206265566 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
* *
206265606 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
*
206265645 CAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CAAATGCCTTCGGGCTTAGCCCGGATATCAC
206265676 TCGAACATTC
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 78 0.80
40 20 0.20
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.21
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
Found at i:206272635 original size:70 final size:71
Alignment explanation
Indices: 206272553--206272715 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
206272543 CGATTTGTCT
*
206272553 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCG-CCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATTTAT
206272617 CTTTCA
66 CTTTCA
206272623 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATTTAT
206272688 CTTTCA
66 CTTTCA
206272694 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
206272716 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 48 0.53
71 43 0.47
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:206272753 original size:71 final size:70
Alignment explanation
Indices: 206272553--206272749 Score: 258
Period size: 70 Copynumber: 2.8 Consensus size: 70
206272543 CGATTTGTCT
* * * *
206272553 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCG-CCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
206272617 CTTTCA
65 CTTTCA
* * *
206272623 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
206272688 CTTTCA
65 CTTTCA
* *
206272694 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
206272750 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 49 0.41
71 46 0.39
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:206284285 original size:40 final size:39
Alignment explanation
Indices: 206284157--206284299 Score: 196
Period size: 39 Copynumber: 3.6 Consensus size: 39
206284147 AATGTTCGAG
206284157 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
206284196 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
206284235 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * * *
206284275 CCATAACCGGGCTATGTCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGC
206284300 GTTTGAACGA
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 61 0.66
40 31 0.34
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:206284320 original size:79 final size:78
Alignment explanation
Indices: 206284155--206284323 Score: 196
Period size: 79 Copynumber: 2.2 Consensus size: 78
206284145 TGAATGTTCG
** *
206284155 AGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGG
1 AGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGG
**
206284220 CAATTGTGCGAGT
66 CAATTGAACGAGT
* * * * * *
206284233 TGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCTATGTCCGAAG
1 AGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAG
**
206284298 GCGTTTGAACGAGT
65 GCAATTGAACGAGT
206284312 AGCT-ATATCCGG
1 AG-TGATATCCGG
206284324 ATAAACTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
78 16 0.21
79 58 0.77
80 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (78 bp):
AGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGG
CAATTGAACGAGT
Found at i:206292056 original size:39 final size:40
Alignment explanation
Indices: 206292002--206292086 Score: 145
Period size: 39 Copynumber: 2.1 Consensus size: 40
206291992 TGTGTATGAA
206292002 TGTGCGAATTGTGATATCCGGGC-TAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTTAAGCCCGAAGGCAAT
* *
206292041 TGTGCGAGTTGTGATATCCGGGCTTAAGCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTTAAGCCCGAAGGCAAT
206292081 TGTGCG
1 TGTGCG
206292087 GGTTACCATA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
39 22 0.51
40 21 0.49
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (40 bp):
TGTGCGAATTGTGATATCCGGGCTTAAGCCCGAAGGCAAT
Found at i:206292102 original size:40 final size:39
Alignment explanation
Indices: 206292019--206292122 Score: 118
Period size: 40 Copynumber: 2.6 Consensus size: 39
206292009 ATTGTGATAT
* *** *
206292019 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACCATAA
*
206292058 CCGGGCTTAAGCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGC-TAAGCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
206292098 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAG-CCCGAAGGCATTTG
206292123 AACGAGTAGC
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
39 9 0.16
40 46 0.84
ACGTcount: A:0.20, C:0.24, G:0.33, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:206299989 original size:40 final size:39
Alignment explanation
Indices: 206299829--206299991 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
206299819 TGTGTATGAA
*
206299829 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
206299868 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
206299907 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
206299946 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
206299986 TGTGCG
1 TGTGCG
206299992 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:206300007 original size:40 final size:39
Alignment explanation
Indices: 206299829--206300022 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
206299819 TGTGTATGAA
* *
206299829 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
206299868 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
206299907 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
206299946 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
206299986 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
206300023 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:206302327 original size:93 final size:95
Alignment explanation
Indices: 206302135--206302341 Score: 231
Period size: 93 Copynumber: 2.2 Consensus size: 95
206302125 ATTTCTAGTC
* * **
206302135 AATGTGGGATTAAAATTAACTTTTTAACAAAAAAATAATGATGAAATTGTTACTTATTTATAAGT
1 AATGTAGGATTAAAATTAACTTTTTAACAAAAAAATAATGAAGAAATTGACACTTATTTATAAGT
* * *
206302200 AAATGTGAGAAATGAGAGTGTTTTATAGTA
66 AAATGTGAGAAATGAGAATGTTCTATAGCA
** * *
206302230 AATGTAGGATTAAAATTAACTTTTT-A-ATTAAAATAATGAAGAAATTGACACTTATTTTTAGGG
1 AATGTAGGATTAAAATTAACTTTTTAACAAAAAAATAATGAAGAAATTGACACTTATTTATA-AG
** * * * *
206302293 TATGTGTGAG-CATGGGAATGTTCTCTAGCG
65 TAAATGTGAGAAATGAGAATGTTCTATAGCA
206302323 AATGTAGGATTAAAATTAA
1 AATGTAGGATTAAAATTAA
206302342 ATCTTTAAGG
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
93 60 0.64
94 10 0.11
95 24 0.26
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (95 bp):
AATGTAGGATTAAAATTAACTTTTTAACAAAAAAATAATGAAGAAATTGACACTTATTTATAAGT
AAATGTGAGAAATGAGAATGTTCTATAGCA
Found at i:206302377 original size:22 final size:22
Alignment explanation
Indices: 206302330--206302378 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
206302320 GCGAATGTAG
*
206302330 GATTAAAATTAAATCTTTAAGG
1 GATTAAAATTAAATCTTTAAGA
*
206302352 GATTAAAATT-AATTTTTAATGA
1 GATTAAAATTAAATCTTTAA-GA
206302374 GATTA
1 GATTA
206302379 GTCACGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.45, C:0.02, G:0.12, T:0.41
Consensus pattern (22 bp):
GATTAAAATTAAATCTTTAAGA
Found at i:206302684 original size:22 final size:23
Alignment explanation
Indices: 206302654--206302696 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
206302644 GCCAATGAGA
*
206302654 GATTTAAATTAATTT-ATTAAGG
1 GATTAAAATTAATTTAATTAAGG
*
206302676 GATTAAAATTATTTTAATTAA
1 GATTAAAATTAATTTAATTAA
206302697 AATAAACATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (23 bp):
GATTAAAATTAATTTAATTAAGG
Found at i:206306811 original size:40 final size:40
Alignment explanation
Indices: 206306719--206306897 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
206306709 CGAATGGTAT
* * *
206306719 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
206306760 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
206306800 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
206306840 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
206306880 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
206306898 ACAATCGAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.02
40 92 0.77
41 26 0.22
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:206306922 original size:80 final size:80
Alignment explanation
Indices: 206306753--206306923 Score: 182
Period size: 80 Copynumber: 2.1 Consensus size: 80
206306743 GTGCTAAGTG
* * * * * *
206306753 ACTAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
* * * *
206306818 GCATTCGTGCGAGTT
66 ACAATCGAGCGAGTC
* * *
206306833 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAA
1 ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAA
*
206306897 GACAATCGAGCTAGTC
65 GACAATCGAGCGAGTC
* *
206306913 GCTATATCCGG
1 ACTAAATCCGG
206306924 TTAAATTCCG
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
79 2 0.03
80 72 0.97
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.22
Consensus pattern (80 bp):
ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:206310576 original size:55 final size:55
Alignment explanation
Indices: 206310492--206310601 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
206310482 GGTTTGTAAA
206310492 AGGATTCTCGATGATAGCCACACCCATGATGAAACTGCTTCAGAAAGATGTCAAG
1 AGGATTCTCGATGATAGCCACACCCATGATGAAACTGCTTCAGAAAGATGTCAAG
206310547 AGGATTCTCGATGATAGCCACACCCATGATGAAACTGCTTCAGAAAGATGTCAAG
1 AGGATTCTCGATGATAGCCACACCCATGATGAAACTGCTTCAGAAAGATGTCAAG
206310602 TTTGAATAGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (55 bp):
AGGATTCTCGATGATAGCCACACCCATGATGAAACTGCTTCAGAAAGATGTCAAG
Found at i:206314329 original size:17 final size:18
Alignment explanation
Indices: 206314287--206314335 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
206314277 AGTTGAAAAG
206314287 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
206314306 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
206314323 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
206314336 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:206315224 original size:40 final size:40
Alignment explanation
Indices: 206315158--206315324 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
206315148 AAATTGAATG
* * *
206315158 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
206315197 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
206315237 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
206315277 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
206315317 ATATCCGG
1 ATATCCGG
206315325 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:206316780 original size:2 final size:2
Alignment explanation
Indices: 206316773--206316800 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
206316763 CGGCTCTAGC
206316773 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
206316801 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:206317614 original size:39 final size:40
Alignment explanation
Indices: 206317506--206317683 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
206317496 CGAATGGTAT
* * *
206317506 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
206317547 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
206317587 CCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
206317626 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
206317666 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
206317684 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 36 0.31
40 56 0.47
41 26 0.22
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:206317640 original size:79 final size:81
Alignment explanation
Indices: 206317506--206317683 Score: 209
Period size: 79 Copynumber: 2.2 Consensus size: 81
206317496 CGAATGGTAT
* * * *
206317506 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAACCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATT
206317571 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * * * *
206317587 CCGGGTTAAGT-CCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATT
* * * *
206317650 GTGCGAATCACTATAA
66 GTGCGAGTTACCAAAA
206317666 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
206317684 ACAATCGAGC
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 2 0.02
79 49 0.60
80 20 0.25
81 10 0.12
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAAACCGGGCTAAGTCCCGAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:206323050 original size:29 final size:29
Alignment explanation
Indices: 206323017--206323205 Score: 238
Period size: 29 Copynumber: 6.5 Consensus size: 29
206323007 GTGACGAGAT
206323017 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
206323046 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
206323075 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
206323104 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
206323133 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
206323162 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
206323191 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
206323206 GAAATCGAGT
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
28 2 0.01
29 137 0.98
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:206331161 original size:29 final size:29
Alignment explanation
Indices: 206331128--206331287 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
206331118 GTGACGAGAT
206331128 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
206331157 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
206331186 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
206331215 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
206331244 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
206331273 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
206331288 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:206336028 original size:30 final size:30
Alignment explanation
Indices: 206335992--206336151 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
206335982 GACAAGATTG
* * * * *
206335992 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
206336022 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
206336050 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
206336079 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
206336109 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
206336138 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
206336152 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:206336120 original size:59 final size:57
Alignment explanation
Indices: 206335992--206336151 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
206335982 GACAAGATTG
* * * * * *
206335992 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
206336050 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
206336109 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
206336152 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:206337991 original size:29 final size:29
Alignment explanation
Indices: 206337959--206338036 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
206337949 ATACCCTCCG
** * *
206337959 AGCTCGCACACCCAGTGCCGTATTTTTTC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
206337988 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
206338017 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
206338037 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:206345829 original size:27 final size:29
Alignment explanation
Indices: 206345790--206345862 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
206345780 CCCTCGAGCT
** *
206345790 CGCACACCCAGTGCCGTAT-TTTCCAGC-
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
206345817 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
206345846 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
206345863 CTCGTCACCG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 15 0.38
28 8 0.21
29 16 0.41
ACGTcount: A:0.23, C:0.34, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:206349359 original size:30 final size:30
Alignment explanation
Indices: 206349323--206349482 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
206349313 GACAAGATTG
* * * * *
206349323 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
206349353 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
206349381 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
206349410 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
206349440 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
206349469 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
206349483 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 48 0.40
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:206349451 original size:59 final size:57
Alignment explanation
Indices: 206349323--206349482 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
206349313 GACAAGATTG
* * * * * *
206349323 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
206349381 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
206349440 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
206349483 GATTCACTAT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:206352556 original size:28 final size:28
Alignment explanation
Indices: 206352491--206352591 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
206352481 ATAGTGAATC
*
206352491 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
206352520 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
206352548 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
206352578 CGCACACTTAGTGC
1 CGCACACTTAGTGC
206352592 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:206360515 original size:28 final size:28
Alignment explanation
Indices: 206360450--206360550 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
206360440 ATAGTGAATC
*
206360450 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
206360479 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
206360507 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
206360537 CGCACACTTAGTGC
1 CGCACACTTAGTGC
206360551 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:206367248 original size:67 final size:67
Alignment explanation
Indices: 206367135--206367269 Score: 261
Period size: 67 Copynumber: 2.0 Consensus size: 67
206367125 CGTGTCCTTC
206367135 ACACAGCTGAGAGACACGACCGTGTCTCATACCCATGTCTCGATACTGAGCATTCTATTTTGCAA
1 ACACAGCTGAGAGACACGACCGTGTCTCATACCCATGTCTCGATACTGAGCATTCTATTTTGCAA
206367200 CA
66 CA
*
206367202 ACACGGCTGAGAGACACGACCGTGTCTCATACCCATGTCTCGATACTGAGCATTCTATTTTGCAA
1 ACACAGCTGAGAGACACGACCGTGTCTCATACCCATGTCTCGATACTGAGCATTCTATTTTGCAA
206367267 CA
66 CA
206367269 A
1 A
206367270 TTTAGGTGCA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (67 bp):
ACACAGCTGAGAGACACGACCGTGTCTCATACCCATGTCTCGATACTGAGCATTCTATTTTGCAA
CA
Found at i:206368651 original size:42 final size:42
Alignment explanation
Indices: 206368530--206368651 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 42
206368520 TACTGTACCA
* *
206368530 ATGCCATATCCCAGTTATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGTTATGGTCTTACAAGTAATCTCATATCG
* * * *
206368572 ATGGCAATAGCCTAGTTATGGTCTTA-AATTAAGTCTCATATCG
1 AT-GCCATATCCCAGTTATGGTCTTACAAGTAA-TCTCATATCG
*
206368615 ATGCCATATCCCA-TATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGT-TATGGTCTTACAAGTAATCTCA
206368652 GTAACCCTAA
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
41 1 0.02
42 29 0.45
43 35 0.54
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAGTTATGGTCTTACAAGTAATCTCATATCG
Found at i:206373881 original size:40 final size:39
Alignment explanation
Indices: 206373836--206373962 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
206373826 CGGAATATAA
206373836 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
206373876 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
206373916 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
206373956 CCGGATA
1 CCGGATA
206373963 AATTTCCAGC
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:206381902 original size:40 final size:39
Alignment explanation
Indices: 206381851--206381997 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 39
206381841 TATAACACGT
206381851 GCACAAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCACAAATTGCCTTCGGGTCTTAGCCCGGATA-AAT-TCTC
* *** *
206381891 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATTGCCTTCGGGTCTTAGCCCGGATA-A-ATTCTC
*
206381931 GCAC-AATTGCCTTCGGGTCTTAACCCGGATAAATT-TC
1 GCACAAATTGCCTTCGGGTCTTAGCCCGGATAAATTCTC
206381968 -CAGCAAATTG-CTTCGGG-CTTAGCCCGGATA
1 GCA-CAAATTGCCTTCGGGTCTTAGCCCGGATA
206381998 TCATTCAATT
Statistics
Matches: 91, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
36 14 0.15
37 9 0.10
38 5 0.05
39 3 0.03
40 60 0.66
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
GCACAAATTGCCTTCGGGTCTTAGCCCGGATAAATTCTC
Found at i:206385045 original size:29 final size:29
Alignment explanation
Indices: 206385013--206385143 Score: 156
Period size: 29 Copynumber: 4.5 Consensus size: 29
206385003 TGACGAGATT
* *
206385013 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
* *
206385042 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
*
206385071 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAC
* **
206385100 GACAC-AATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAA-GTGTGCGTGCTGGAAAAATAC
**
206385129 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
206385144 AGCTCGAAGG
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
28 2 0.02
29 88 0.98
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.22
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAC
Found at i:206392175 original size:40 final size:39
Alignment explanation
Indices: 206392056--206392184 Score: 181
Period size: 39 Copynumber: 3.3 Consensus size: 39
206392046 GGACTAAGAT
* *
206392056 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
206392095 CCGAAGGCATTTGTGCGAGTTACTAAACCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
*
206392134 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACC-GGGTTAAGTC
206392174 CCGAAGGCATT
1 CCGAAGGCATT
206392185 TGAGCTAGTC
Statistics
Matches: 82, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
38 10 0.12
39 49 0.60
40 18 0.22
41 5 0.06
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:206392217 original size:79 final size:78
Alignment explanation
Indices: 206392055--206392219 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 78
206392045 CGGACTAAGA
* * *
206392055 TCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
*
206392120 AACCGGGTTAAGT
66 AACCGGGTTAAAT
* * * * *
206392133 CCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTCCCGAAGGCATTTGAGCTAGTCG
1 TCCGAAGGCATTCGTGCGAGTTAATA-AATCC-GGGTTAAG-CCCGAAGGCATTTGAGCGAGTCA
* *
206392196 TTATATCC-GGTTAAAT
63 CTA-AACCGGGTTAAAT
206392212 TCCGAAGG
1 TCCGAAGG
206392220 TACGTGATTC
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
78 26 0.37
79 42 0.59
80 3 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
AACCGGGTTAAAT
Found at i:206395222 original size:23 final size:18
Alignment explanation
Indices: 206395176--206395215 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
206395166 GTTTTTGCTC
206395176 CTTTTGCTTCTTGCCTTT
1 CTTTTGCTTCTTGCCTTT
206395194 CTTTTGCTTCTTGCCTTT
1 CTTTTGCTTCTTGCCTTT
206395212 CTTT
1 CTTT
206395216 GGTTTTGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.00, C:0.28, G:0.10, T:0.62
Consensus pattern (18 bp):
CTTTTGCTTCTTGCCTTT
Found at i:206396507 original size:27 final size:27
Alignment explanation
Indices: 206396477--206396528 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
206396467 CCCATACTGA
*
206396477 TAAAATGACTGTTATACCCCTATGAGG
1 TAAAATGACTGATATACCCCTATGAGG
*
206396504 TAAAATGATTGATATACCCCTATGA
1 TAAAATGACTGATATACCCCTATGA
206396529 TATGTATGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (27 bp):
TAAAATGACTGATATACCCCTATGAGG
Found at i:206398624 original size:16 final size:16
Alignment explanation
Indices: 206398603--206398634 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
206398593 TTCATCACAC
*
206398603 TTAGGTTAATTTGCAT
1 TTAGGTTAACTTGCAT
206398619 TTAGGTTAACTTGCAT
1 TTAGGTTAACTTGCAT
206398635 CTAGATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.09, G:0.19, T:0.47
Consensus pattern (16 bp):
TTAGGTTAACTTGCAT
Found at i:206399439 original size:22 final size:23
Alignment explanation
Indices: 206399414--206399458 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
206399404 TAGAAAAGTG
206399414 TAGAGAAAAACT-AA-ATAAAACT
1 TAGAG-AAAACTAAACATAAAACT
206399436 TAGAGAAAACTAAACATAAAACT
1 TAGAGAAAACTAAACATAAAACT
206399459 AAGCTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.29
22 7 0.33
23 8 0.38
ACGTcount: A:0.62, C:0.11, G:0.09, T:0.18
Consensus pattern (23 bp):
TAGAGAAAACTAAACATAAAACT
Found at i:206401013 original size:13 final size:13
Alignment explanation
Indices: 206400997--206401030 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
206400987 AATTTTTATG
206400997 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
206401010 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
*
206401023 CTTGGGTT
1 ATTGGGTT
206401031 TATATATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.12, C:0.03, G:0.44, T:0.41
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:206403732 original size:39 final size:40
Alignment explanation
Indices: 206403644--206403825 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 40
206403634 GACTCGCTCA
* ** ** *
206403644 AATGCCTTTGGGACGAAGCCCGG-TTATAGCGACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCACG
* *
206403684 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC-
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
* *
206403723 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
* * * *
206403762 AATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCACG
*
206403802 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
206403826 CATCATTCGA
Statistics
Matches: 116, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 24 0.21
39 21 0.18
40 62 0.53
41 9 0.08
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCACG
Found at i:206403759 original size:78 final size:80
Alignment explanation
Indices: 206403675--206403825 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
206403665 GGTTATAGCG
* * * *
206403675 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
206403737 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
206403753 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
206403818 AGCCCGGA
66 AGCCCGGA
206403826 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:206411714 original size:38 final size:39
Alignment explanation
Indices: 206411620--206411779 Score: 132
Period size: 38 Copynumber: 4.2 Consensus size: 39
206411610 GAATCACGTA
* * * * *
206411620 CCTTCGGAATTTAA-CCGGATATAAGACTCGCTCAAATG
1 CCTTCGGGACTTAACCCGGATATAGGACTCGCACGAATG
*
206411658 CCTTCGGGAC-GAAGCCCGG-TATAGGACTCGCACGAATG
1 CCTTCGGGACTTAA-CCCGGATATAGGACTCGCACGAATG
* * * * *
206411696 CCTTCGGGACTTAACCCGGGTTTAGTAATTGCAC-AATG
1 CCTTCGGGACTTAACCCGGATATAGGACTCGCACGAATG
* * **
206411734 CCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATATA-GGACTCGCACGAATG
206411773 CCTTCGG
1 CCTTCGG
206411780 ATCCTTAGTC
Statistics
Matches: 99, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
37 15 0.15
38 57 0.58
39 27 0.27
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATATAGGACTCGCACGAATG
Found at i:206411779 original size:39 final size:40
Alignment explanation
Indices: 206411645--206411779 Score: 138
Period size: 38 Copynumber: 3.5 Consensus size: 40
206411635 CGGATATAAG
* * * * *
206411645 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGG-TATAG-G
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATTTAGTA
*
206411683 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * *
206411723 A-TTGCAC-AATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
206411760 ACTCGCACGAATGCCTTCGG
1 ACTCGCACGAATGCCTTCGG
206411780 ATCCTTAGTC
Statistics
Matches: 82, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
37 16 0.20
38 43 0.52
39 22 0.27
40 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:206422550 original size:40 final size:40
Alignment explanation
Indices: 206422423--206422552 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
206422413 ATGCTGGAAA
* * *
206422423 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
206422463 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
206422503 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
206422543 TTATATCCGG
1 TTATATCCGG
206422553 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:206424543 original size:39 final size:40
Alignment explanation
Indices: 206424412--206424549 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 40
206424402 GGATATAACG
* * * **
206424412 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGG-TTATAGCG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
*
206424452 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * *
206424492 ACTTGCAC-AATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
206424530 ACTCGCACGAATGCCTTCGG
1 ACTCGCACGAATGCCTTCGG
206424550 ATCCTAGTCC
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
38 22 0.26
39 23 0.27
40 36 0.42
41 4 0.05
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:206424547 original size:78 final size:80
Alignment explanation
Indices: 206424452--206424600 Score: 205
Period size: 78 Copynumber: 1.9 Consensus size: 80
206424442 GGTTATAGCG
* * * *
206424452 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
206424514 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
206424530 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
206424595 AGCCCG
66 AGCCCG
206424601 CACATCATTC
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
77 3 0.05
78 34 0.56
79 15 0.25
80 9 0.15
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:206430377 original size:24 final size:23
Alignment explanation
Indices: 206430345--206430453 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
206430335 ACCAAACGTT
* **
206430345 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
206430369 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
206430393 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
206430417 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
206430441 GCACACATAGTGC
1 GCACACATAGTGC
206430454 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:206430419 original size:48 final size:48
Alignment explanation
Indices: 206430345--206430453 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
206430335 ACCAAACGTT
* **
206430345 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
206430393 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
206430441 GCACACATAGTGC
1 GCACACATAGTGC
206430454 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:206433138 original size:41 final size:41
Alignment explanation
Indices: 206433093--206433210 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
206433083 TGAAAGATAA
206433093 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
206433134 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
206433164 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
206433205 ATGTAG
1 ATGTAG
206433211 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:206433149 original size:71 final size:71
Alignment explanation
Indices: 206433061--206433224 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
206433051 GAGATGTATC
206433061 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
206433126 AGGACA
66 AGGACA
206433132 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
206433197 AGGACA
66 AGGACA
206433203 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
206433225 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:206435851 original size:68 final size:70
Alignment explanation
Indices: 206435779--206435976 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
206435769 ACACCCTGTA
* * * *
206435779 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
206435841 ATAAAT
65 ATAAAT
*
206435847 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
206435912 ATAAAT
65 ATAAAT
*
206435918 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
206435977 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:206435890 original size:41 final size:41
Alignment explanation
Indices: 206435845--206435962 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
206435835 TGAAAGATAA
206435845 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
206435886 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
206435916 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
206435957 ATGTAG
1 ATGTAG
206435963 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:206435902 original size:71 final size:71
Alignment explanation
Indices: 206435813--206435976 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
206435803 GAGATGTATC
206435813 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
206435878 AGGACA
66 AGGACA
206435884 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
206435949 AGGACA
66 AGGACA
206435955 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
206435977 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:206443381 original size:68 final size:70
Alignment explanation
Indices: 206443295--206443492 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
206443285 ACACCCTGTA
* * * *
206443295 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
206443357 ATAAAT
65 ATAAAT
*
206443363 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
206443428 ATAAAT
65 ATAAAT
*
206443434 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
206443493 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:206443406 original size:41 final size:41
Alignment explanation
Indices: 206443361--206443478 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
206443351 TGAAAGATAA
206443361 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
206443402 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
206443432 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
206443473 ATGTAG
1 ATGTAG
206443479 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:206443415 original size:71 final size:71
Alignment explanation
Indices: 206443329--206443492 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
206443319 GAGATGTATC
206443329 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
206443394 AGGACA
66 AGGACA
206443400 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
206443465 AGGACA
66 AGGACA
206443471 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
206443493 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:206446107 original size:40 final size:40
Alignment explanation
Indices: 206446062--206446228 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
206446052 CGGAATATAA
206446062 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
206446102 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
206446142 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
206446182 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
206446221 CCGGATAT
1 CCGGATAT
206446229 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:206454118 original size:40 final size:40
Alignment explanation
Indices: 206454073--206454202 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
206454063 CGGAATATAA
206454073 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
206454113 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
206454153 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
206454193 CCGGATATAA
1 CCGGATATAA
206454203 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:206464245 original size:28 final size:29
Alignment explanation
Indices: 206464213--206464327 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
206464203 TACCTGTATC
* *
206464213 TGGCCCATTACGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
**
206464241 TGGCCCATTAGGCCCAAATCACCGGT-ATA
1 TGGCCCATTAGGCCCAAATCA-CATTCATA
*
206464270 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
206464299 TGGCCCGTTA-GCCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
206464327 T
1 T
206464328 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 32 0.43
29 41 0.55
30 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:206464408 original size:17 final size:18
Alignment explanation
Indices: 206464386--206464419 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
206464376 TGCCTATTAT
206464386 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
206464403 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
206464420 TCCGACCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:206466279 original size:30 final size:30
Alignment explanation
Indices: 206466243--206466343 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
206466233 GACAAGATTG
* * *
206466243 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
206466273 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
206466301 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
206466330 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
206466344 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:206466355 original size:29 final size:28
Alignment explanation
Indices: 206466272--206466347 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
206466262 AAAATTGTAC
* *
206466272 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
206466300 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
206466329 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
206466348 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:206474125 original size:30 final size:30
Alignment explanation
Indices: 206474089--206474189 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
206474079 GACAAGATTG
* * *
206474089 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
206474119 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
206474147 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
206474176 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
206474190 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:206474201 original size:29 final size:28
Alignment explanation
Indices: 206474118--206474193 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
206474108 AAAATTGTAC
* *
206474118 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
206474146 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
206474175 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
206474194 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Done.