Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 657 of 770
Found at i:206479150 original size:30 final size:29
Alignment explanation
Indices: 206479056--206479157 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
206479046 TATAGTGAAT
* * *
206479056 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
206479085 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
206479113 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
206479143 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
206479158 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:206487037 original size:30 final size:29
Alignment explanation
Indices: 206486943--206487044 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
206486933 TATAGTGAAT
* * *
206486943 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
206486972 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
206487000 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
206487030 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
206487045 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:206494002 original size:27 final size:28
Alignment explanation
Indices: 206493956--206494023 Score: 113
Period size: 27 Copynumber: 2.5 Consensus size: 28
206493946 GCGTAGATCA
206493956 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
206493984 CGAAATTA-CCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
206494011 CGATA-TACCCCTA
1 CGAAATTACCCCTA
206494024 GGGTTTTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
26 2 0.05
27 28 0.74
28 8 0.21
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:206500729 original size:40 final size:40
Alignment explanation
Indices: 206500684--206500850 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
206500674 CGGAATATAA
206500684 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
206500724 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
206500764 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
206500804 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
206500843 CCGGATAT
1 CCGGATAT
206500851 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:206500834 original size:80 final size:79
Alignment explanation
Indices: 206500700--206500850 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
206500690 ATAATCACGT
*
206500700 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
206500765 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
206500780 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
206500843 CCGGATAT
64 CCGGATAT
206500851 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:206509482 original size:22 final size:22
Alignment explanation
Indices: 206509457--206509532 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
206509447 AAGTGTATAT
206509457 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
206509479 ATGTGATGAATG-TGAATGTGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
*
206509503 TATGTGATAAGGCCGAATGGCCG
1 -ATGTGATAAGGCCGAATGGCCA
206509526 ATGTGAT
1 ATGTGAT
206509533 GGATGTGAAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 19 0.47
23 4 0.10
24 5 0.12
25 12 0.30
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:206509489 original size:47 final size:47
Alignment explanation
Indices: 206509435--206509607 Score: 283
Period size: 47 Copynumber: 3.7 Consensus size: 47
206509425 ATGATGAAAT
206509435 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
206509482 TGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* * *
206509529 TGATGGATGTGAAGGTGTATATATGTGATAAGGCCAAATGGCCAATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
* *
206509576 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
206509608 TCCCGAAGGG
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
Found at i:206509520 original size:25 final size:25
Alignment explanation
Indices: 206509449--206509521 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
206509439 GAATGTGAAA
206509449 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
** * *
206509474 G-G-CCA-ATGTGATGAATG-TGAAT
1 GTGTATATATGTGAT-AAGGCCGAAT
206509496 GTGTATATATGTGATAAGGCCGAAT
1 GTGTATATATGTGATAAGGCCGAAT
206509521 G
1 G
206509522 GCCGATGTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 5 0.14
25 13 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (25 bp):
GTGTATATATGTGATAAGGCCGAAT
Found at i:206512431 original size:43 final size:43
Alignment explanation
Indices: 206512081--206512419 Score: 570
Period size: 43 Copynumber: 7.9 Consensus size: 43
206512071 GCATGAAACT
* *
206512081 CGGTGATGTGTATTGGGGCCTTCGTGCCTAGCAGGCTTCATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
206512124 CGGTGATGTGTATTGGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
206512167 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * *
206512210 CGATGATATGTATTCGGGCCTTCATGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
**
206512253 CAATGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
206512296 CGATGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
206512339 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
206512382 CGGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
206512420 AATACTGGTG
Statistics
Matches: 281, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 281 1.00
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.31
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:206512621 original size:29 final size:28
Alignment explanation
Indices: 206512588--206512746 Score: 106
Period size: 29 Copynumber: 5.5 Consensus size: 28
206512578 ATGATTAGAG
*
206512588 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCAAATT-CTTTAACCGA
* ** **
206512617 GCACTATGTGTGCGAGA-TCAGTAATTGA
1 GCACTATGTGTGC-AAATTCTTTAACCGA
* *
206512645 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCAAATT-CTTTAACCGA
* ** **
206512675 GCACTATGTGTGCGAGA-TCGGTAATTGA
1 GCACTATGTGTGC-AAATTCTTTAACCGA
* * *
206512703 GGCACTGTGTGTGCAAGTTCTTCAACCGA
1 -GCACTATGTGTGCAAATTCTTTAACCGA
206512732 GCACTATGTGTGCAA
1 GCACTATGTGTGCAA
206512747 GATCGGTCAG
Statistics
Matches: 94, Mismatches: 29, Indels: 15
0.68 0.21 0.11
Matches are distributed among these distances:
28 28 0.30
29 57 0.61
30 9 0.10
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCAAATTCTTTAACCGA
Found at i:206512653 original size:58 final size:58
Alignment explanation
Indices: 206512585--206512750 Score: 280
Period size: 58 Copynumber: 2.9 Consensus size: 58
206512575 CGAATGATTA
206512585 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
* *
206512643 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
* * *
206512701 GAGGCACTGTGTGTGCAAGTT-CTTCAACCGAGCACTATGTGTGCAAGATC
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATC
206512751 GGTCAGTGGC
Statistics
Matches: 102, Mismatches: 6, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
57 27 0.26
58 75 0.74
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
Found at i:206516728 original size:35 final size:35
Alignment explanation
Indices: 206516689--206516761 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
206516679 GGTATGTGAT
206516689 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
206516724 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
206516759 ATA
1 ATA
206516762 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:206527814 original size:40 final size:40
Alignment explanation
Indices: 206527769--206527935 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
206527759 CGGAATATAA
206527769 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
206527809 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
206527849 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
206527889 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
206527928 CCGGATAT
1 CCGGATAT
206527936 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:206528779 original size:17 final size:19
Alignment explanation
Indices: 206528756--206528801 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
206528746 AAGAAGCATG
206528756 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
206528774 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
206528792 AATCATGCTC
1 AATCATGCTC
206528802 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:206535813 original size:40 final size:40
Alignment explanation
Indices: 206535768--206535934 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
206535758 CGGAATATAA
206535768 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
206535808 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
206535848 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
206535888 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
206535927 CCGGATAT
1 CCGGATAT
206535935 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:206535918 original size:80 final size:79
Alignment explanation
Indices: 206535784--206535934 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
206535774 ATAATCACGT
*
206535784 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
206535849 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
206535864 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
206535927 CCGGATAT
64 CCGGATAT
206535935 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:206536778 original size:17 final size:19
Alignment explanation
Indices: 206536755--206536800 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
206536745 AAGAAGCATG
206536755 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
206536773 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
206536791 AATCATGCTC
1 AATCATGCTC
206536801 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:206541485 original size:26 final size:26
Alignment explanation
Indices: 206541456--206541563 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
206541446 TGGTACAAAT
206541456 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
206541482 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
206541508 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
206541534 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
206541560 TGAT
1 TGAT
206541564 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:206543087 original size:26 final size:27
Alignment explanation
Indices: 206543028--206543090 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
206543018 AATTACTATA
* *
206543028 ATACCCCTATGTATGAAAATTACTGTT
1 ATACCCCTAGGTATGAAAATTACCGTT
*
206543055 ATA-CCCTAGGTGT-AAAATTACCGTT
1 ATACCCCTAGGTATGAAAATTACCGTT
206543080 ATACCCCTAGG
1 ATACCCCTAGG
206543091 GTTAATTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 14 0.44
26 15 0.47
27 3 0.09
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (27 bp):
ATACCCCTAGGTATGAAAATTACCGTT
Found at i:206543233 original size:27 final size:27
Alignment explanation
Indices: 206543193--206543332 Score: 189
Period size: 27 Copynumber: 5.2 Consensus size: 27
206543183 AGGAAGCGTC
*
206543193 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
206543220 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
206543246 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
206543274 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
206543301 CTGGTGGCTCTGCCACAA-TATCTTAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
206543327 CTGGTG
1 CTGGTG
206543333 ACTTCGTCAC
Statistics
Matches: 101, Mismatches: 6, Indels: 13
0.84 0.05 0.11
Matches are distributed among these distances:
26 17 0.17
27 80 0.79
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:206543272 original size:54 final size:54
Alignment explanation
Indices: 206543190--206543332 Score: 252
Period size: 54 Copynumber: 2.7 Consensus size: 54
206543180 TGGAGGAAGC
206543190 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
206543244 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
206543298 GTTCTGGTGGCTCTGCCACAA-TATCTTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTG
206543333 ACTTCGTCAC
Statistics
Matches: 86, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
53 13 0.15
54 73 0.85
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:206551159 original size:40 final size:40
Alignment explanation
Indices: 206551104--206551350 Score: 356
Period size: 40 Copynumber: 6.2 Consensus size: 40
206551094 TGAATGATAC
* * *
206551104 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
206551144 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
206551184 CCGGGCTAAGGCCCGAAGGCA-TTCTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
206551223 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
206551263 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
206551303 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
206551343 CC-GGCTAA
1 CCGGGCTAA
206551351 ATTCCGAAGA
Statistics
Matches: 188, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 42 0.22
40 144 0.77
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:206551238 original size:79 final size:80
Alignment explanation
Indices: 206551104--206551350 Score: 356
Period size: 79 Copynumber: 3.1 Consensus size: 80
206551094 TGAATGATAC
* *
206551104 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
206551168 GTGCGAGTTGTTATAT
65 GTGCGAGTTGTTATAT
* *
206551184 CCGGGCTAAGGCCCGAAGGCA-TTCTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
206551248 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
* * * * *
206551263 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
** *
206551328 TGCTTGTGGTTATAT
66 TGCGAGTTGTTATAT
206551343 CC-GGCTAA
1 CCGGGCTAA
206551351 ATTCCGAAGA
Statistics
Matches: 153, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
79 79 0.52
80 74 0.48
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGTTATAT
Found at i:206551318 original size:119 final size:120
Alignment explanation
Indices: 206551104--206551350 Score: 365
Period size: 119 Copynumber: 2.1 Consensus size: 120
206551094 TGAATGATAC
* *
206551104 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
* * * *
206551169 TGCGAGTTGTTATATCCGGGCTAAGGCCCGAAGGC-ATTCTGCGAGTTGTTATAT
66 TGCGAGTTGCTATACCCGGGCTAAGACCCGAAGGCAATTCTGCGAGTGGTTATAT
*
206551223 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTT
* * **
206551287 GTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
65 GTGCGAGTTGCTATACCCGGGCTAAGACCCGAAGGCAATTCTGCGAGTGGTTATAT
206551343 CC-GGCTAA
1 CCGGGCTAA
206551351 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 11, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
119 96 0.83
120 19 0.17
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGCTATACCCGGGCTAAGACCCGAAGGCAATTCTGCGAGTGGTTATAT
Found at i:206552989 original size:26 final size:26
Alignment explanation
Indices: 206552960--206553067 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
206552950 TGGTACAAAT
206552960 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
206552986 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
206553012 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
206553038 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
206553064 TGAT
1 TGAT
206553068 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:206554944 original size:79 final size:80
Alignment explanation
Indices: 206554801--206555008 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
206554791 ACCTTCGGAG
* * ** * * * *
206554801 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
206554865 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
206554880 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
206554942 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
206554959 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
206555009 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:206554953 original size:40 final size:40
Alignment explanation
Indices: 206554901--206555008 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
206554891 TATCACGATT
** *
206554901 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
206554941 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
206554981 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
206555009 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:206563046 original size:79 final size:79
Alignment explanation
Indices: 206562903--206563109 Score: 188
Period size: 79 Copynumber: 2.6 Consensus size: 79
206562893 ACCTTCGGAG
* * ** * * *
206562903 CTTAA-CCGGATATAGCTACTCGTTCAATCGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAT-GCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
206562967 CCAAGGCCTACGGGA
65 CCAAGGCCTACGGGA
* * * *
206562982 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
206563044 CACGAATGCCTTCGGGT
63 CACCAAGGCCTACGGGA
* * *
206563061 CTTAGCCCGGATATAGCCACTAGCACATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAGCCCGG
206563110 TTATAATTTC
Statistics
Matches: 104, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
78 2 0.02
79 83 0.80
80 18 0.17
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.23
Consensus pattern (79 bp):
CTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCAC
CAAGGCCTACGGGA
Found at i:206563055 original size:40 final size:39
Alignment explanation
Indices: 206563003--206563109 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 39
206562993 TATCACGATT
** *
206563003 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
206563043 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
206563083 GCACATTGCCTTCGGGTCTTAACCCGG
1 GCACAATGCCTTCGGGTCTTAGCCCGG
206563110 TTATAATTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 21 0.36
40 38 0.64
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:206563109 original size:39 final size:40
Alignment explanation
Indices: 206562972--206563115 Score: 139
Period size: 39 Copynumber: 3.6 Consensus size: 40
206562962 CCGCACCAAG
* * * * * * *
206562972 GCCTACGGGACTTAACCCGGATATCACGA-TTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* ** *
206563011 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
206563051 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCAC-ATT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
206563090 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
206563116 TTTCCAGCAT
Statistics
Matches: 87, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 48 0.55
40 39 0.45
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
Found at i:206566160 original size:27 final size:26
Alignment explanation
Indices: 206566106--206566261 Score: 154
Period size: 27 Copynumber: 5.8 Consensus size: 26
206566096 AAGCGTCCTA
* *
206566106 GTGGCTATGCTACAATTATCTGATCTG
1 GTGGCTCTGCCACAA-TATCTGATCTG
*
206566133 GTAGCTCTGCCACATATATCTG-TCCTG
1 GTGGCTCTGCCACA-ATATCTGAT-CTG
* *
206566160 GTGGCTATGCCACAATTATCTGATCTA
1 GTGGCTCTGCCACAA-TATCTGATCTG
*
206566187 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACA-ATATCTGATCTG
*
206566214 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTCTGCCACAATATCT-GATCTG
* *
206566241 GTGACT-TCGTCACAATATCTG
1 GTGGCTCT-GCCACAATATCTG
206566262 GCAGCCTCGC
Statistics
Matches: 108, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
26 9 0.08
27 96 0.89
28 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGATCTG
Found at i:206566182 original size:54 final size:54
Alignment explanation
Indices: 206566100--206566242 Score: 207
Period size: 54 Copynumber: 2.6 Consensus size: 54
206566090 TGGAGGAAGC
* *
206566100 GTCCTAGTGGCTATGCTACAATTATCTGATCTGGTAGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTAGCTCTGCCACATATATCT
* *
206566154 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTAGCTCTGCCACATATATCT
* * *
206566208 GTTCTGGTGGCTCTGCCACAA-TATCTATATCTGGT
1 GTCCTGGTGGCTATGCCACAATTATCT-GATCTGGT
206566243 GACTTCGTCA
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTAGCTCTGCCACATATATCT
Found at i:206566255 original size:81 final size:80
Alignment explanation
Indices: 206566103--206566261 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 80
206566093 AGGAAGCGTC
* * *
206566103 CTAGTGGCTATGCTACAATTATCTGATCTGGTAGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTAGTGGCTATGCCACAATTATCTGATCTGGTAGCTCTGCCACATATATCTATCCTGGTGACTAT
206566168 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
206566184 CTAGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTATATCTGGTGACT
1 CTAGTGGCTATGCCACAAT-TATCTGATCTGGTAGCTCTGCCACATATATCTAT-CCTGGTGACT
*
206566247 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
206566262 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
80 16 0.24
81 51 0.76
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (80 bp):
CTAGTGGCTATGCCACAATTATCTGATCTGGTAGCTCTGCCACATATATCTATCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:206568151 original size:7 final size:7
Alignment explanation
Indices: 206568139--206568165 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
206568129 CACATTTCTA
206568139 CTCATCC
1 CTCATCC
206568146 CTCATCC
1 CTCATCC
206568153 CTCATCC
1 CTCATCC
206568160 CTCATC
1 CTCATC
206568166 ATTCATCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.56, G:0.00, T:0.30
Consensus pattern (7 bp):
CTCATCC
Found at i:206568171 original size:14 final size:14
Alignment explanation
Indices: 206568138--206568172 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
206568128 TCACATTTCT
206568138 ACTCATCCCTCATC
1 ACTCATCCCTCATC
*
206568152 CCTCATCCCTCATC
1 ACTCATCCCTCATC
*
206568166 ATTCATC
1 ACTCATC
206568173 ATTCTCTCCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.20, C:0.49, G:0.00, T:0.31
Consensus pattern (14 bp):
ACTCATCCCTCATC
Found at i:206571180 original size:29 final size:29
Alignment explanation
Indices: 206571146--206571218 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
206571136 AATCGATCTC
** *
206571146 GCACACTTAGTGCCATGTGATTT-AAGTTT
1 GCACACTTAGTGCCAT-ACATTTCAAGCTT
206571175 GCACACTTAGTGCCATACATTTCAAGCTT
1 GCACACTTAGTGCCATACATTTCAAGCTT
206571204 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
206571219 ATTCTCGTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 4 0.10
29 36 0.90
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (29 bp):
GCACACTTAGTGCCATACATTTCAAGCTT
Found at i:206571252 original size:15 final size:15
Alignment explanation
Indices: 206571232--206571276 Score: 81
Period size: 15 Copynumber: 3.0 Consensus size: 15
206571222 CTCGTCACCA
*
206571232 CGCACACTTATTGCC
1 CGCACACTTAGTGCC
206571247 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
206571262 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
206571277 GAACGAACAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.20, C:0.40, G:0.18, T:0.22
Consensus pattern (15 bp):
CGCACACTTAGTGCC
Found at i:206579246 original size:29 final size:29
Alignment explanation
Indices: 206579212--206579284 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
206579202 AATCGATCTC
** *
206579212 GCACACTTAGTGCCATGTGATTT-AAGTTT
1 GCACACTTAGTGCCAT-ACATTTCAAGCTT
206579241 GCACACTTAGTGCCATACATTTCAAGCTT
1 GCACACTTAGTGCCATACATTTCAAGCTT
206579270 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
206579285 ATTCTCGTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 4 0.10
29 36 0.90
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (29 bp):
GCACACTTAGTGCCATACATTTCAAGCTT
Found at i:206579318 original size:15 final size:15
Alignment explanation
Indices: 206579298--206579342 Score: 81
Period size: 15 Copynumber: 3.0 Consensus size: 15
206579288 CTCGTCACCA
*
206579298 CGCACACTTATTGCC
1 CGCACACTTAGTGCC
206579313 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
206579328 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
206579343 GAAACCGAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.20, C:0.40, G:0.18, T:0.22
Consensus pattern (15 bp):
CGCACACTTAGTGCC
Found at i:206581368 original size:26 final size:21
Alignment explanation
Indices: 206581321--206581361 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
206581311 GACACACATA
206581321 TCTGCTTCATACATATGATAC
1 TCTGCTTCATACATATGATAC
206581342 TCTGCTTCATACATATGATA
1 TCTGCTTCATACATATGATA
206581362 TTCTACTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (21 bp):
TCTGCTTCATACATATGATAC
Found at i:206583915 original size:55 final size:53
Alignment explanation
Indices: 206583807--206583974 Score: 151
Period size: 55 Copynumber: 3.1 Consensus size: 53
206583797 ATTAGGGTTT
* * * **
206583807 AAGGATACCATGGAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGC-ATTCATAA-G-TTCATAAGGC
* *
206583862 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTCATAAGTTACTATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGACATGGCATTCATAAGTT-C-ATAAGGC
** * ** *
206583917 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGAAACCATGTAAGACCATGCCAAGACATGGCATTCATAAGTTCATAAGGC
206583970 AAGGA
1 AAGGA
206583975 TTGTGACACC
Statistics
Matches: 93, Mismatches: 15, Indels: 12
0.77 0.12 0.10
Matches are distributed among these distances:
52 6 0.06
53 9 0.10
54 7 0.08
55 67 0.72
56 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (53 bp):
AAGGAAACCATGTAAGACCATGCCAAGACATGGCATTCATAAGTTCATAAGGC
Found at i:206586679 original size:49 final size:49
Alignment explanation
Indices: 206586626--206586952 Score: 509
Period size: 49 Copynumber: 6.8 Consensus size: 49
206586616 TTAGGATTTT
* *
206586626 ATGTGATGAATGTGAATGTGTATATATATGAGATAAGGCCGAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
*
206586675 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
* *
206586724 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
*
206586773 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
* *
206586822 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
* * *
206586871 ATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
* *
206586918 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
206586953 TCCCGAAGGG
Statistics
Matches: 263, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
47 52 0.20
48 1 0.00
49 210 0.80
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
Found at i:206588426 original size:40 final size:40
Alignment explanation
Indices: 206588362--206588632 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
206588352 GAGAATTGAG
* * *
206588362 AGTGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
206588402 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
206588442 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
206588482 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
206588522 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
206588562 AGTGATGTAACCGGACTAAG-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
206588601 AGTGATGTATCCGGGCTAGGTCCCAAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
206588633 ATCATGCTGG
Statistics
Matches: 217, Mismatches: 13, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
39 36 0.17
40 181 0.83
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:206592202 original size:71 final size:72
Alignment explanation
Indices: 206592042--206592206 Score: 323
Period size: 71 Copynumber: 2.3 Consensus size: 72
206592032 CGATTTGTCT
206592042 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCAATGCGACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCAATGCGACCTAGCTACATTTA
206592107 TCTTTCA
66 TCTTTCA
206592114 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGC-ATGCGACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCAATGCGACCTAGCTACATTTA
206592178 TCTTTCA
66 TCTTTCA
206592185 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
206592207 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 49 0.53
72 44 0.47
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (72 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCAATGCGACCTAGCTACATTTA
TCTTTCA
Found at i:206592244 original size:71 final size:70
Alignment explanation
Indices: 206592042--206592240 Score: 251
Period size: 71 Copynumber: 2.8 Consensus size: 70
206592032 CGATTTGTCT
* * * *
206592042 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCAATGCGACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACAC-ATGCGACCTAGCTACATTTA
206592107 TCTTTCA
64 TCTTTCA
* * * *
206592114 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
206592179 CTTTCA
65 CTTTCA
* *
206592185 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
206592241 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 52 0.43
72 44 0.37
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:206603442 original size:40 final size:40
Alignment explanation
Indices: 206603276--206603460 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
206603266 TTCGAATGAT
* * *
206603276 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** * *
206603316 ATCCGGAATAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
206603356 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* *
206603396 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA
*
206603437 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
206603461 TGAATGTGTA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 111 0.93
41 8 0.07
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:206603454 original size:80 final size:80
Alignment explanation
Indices: 206603276--206603463 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
206603266 TTCGAATGAT
* *
206603276 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGAATAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
206603341 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* * **
206603356 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGAATAAGAT-CCGAAGG
* *
206603417 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
206603437 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
206603464 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:206612318 original size:40 final size:40
Alignment explanation
Indices: 206612263--206612426 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
206612253 TGAATGATAC
* * *
206612263 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
206612303 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
206612343 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * * *
206612383 CCGAGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
206612423 CCGG
1 CCGG
206612427 TTAAATCCCG
Statistics
Matches: 101, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:206613273 original size:22 final size:22
Alignment explanation
Indices: 206613247--206613297 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
206613237 GAATCTACTT
*
206613247 TCATATGGAAGAAATGAAACGG
1 TCATATGGAAGAAACGAAACGG
206613269 TCATATGGAAGAAACGAAACGG
1 TCATATGGAAGAAACGAAACGG
206613291 TCATATG
1 TCATATG
206613298 AGTTATATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.43, C:0.12, G:0.25, T:0.20
Consensus pattern (22 bp):
TCATATGGAAGAAACGAAACGG
Found at i:206613889 original size:20 final size:20
Alignment explanation
Indices: 206613861--206613899 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
206613851 ACATTTTACT
206613861 TTCAATCGTATAAATAGTAA
1 TTCAATCGTATAAATAGTAA
* *
206613881 TTCATTCGTATCAATAGTA
1 TTCAATCGTATAAATAGTA
206613900 CTTTACCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (20 bp):
TTCAATCGTATAAATAGTAA
Found at i:206614129 original size:24 final size:22
Alignment explanation
Indices: 206614052--206614170 Score: 89
Period size: 24 Copynumber: 5.1 Consensus size: 22
206614042 CCTGAGCTGA
*
206614052 TGAACAGTAAGCTC-TATTGAGC
1 TGAACAGTAAGCTCATA-CGAGC
* *
206614074 AGAAACGGTAAGCTC-TAACGAGC
1 TG-AACAGTAAGCTCAT-ACGAGC
*
206614097 TGAACAGTAAGTTCATACGAGC
1 TGAACAGTAAGCTCATACGAGC
*
206614119 TAAGAACAGTAAGCTCTTACGAGC
1 T--GAACAGTAAGCTCATACGAGC
*
206614143 TGACATATCAATAAGCTCATACGAGC
1 TG--A-A-CAGTAAGCTCATACGAGC
206614169 TG
1 TG
206614171 CGGTGAGTTC
Statistics
Matches: 78, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
22 19 0.24
23 18 0.23
24 22 0.28
25 1 0.01
26 18 0.23
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (22 bp):
TGAACAGTAAGCTCATACGAGC
Found at i:206618705 original size:40 final size:40
Alignment explanation
Indices: 206618650--206618867 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
206618640 CGGATGATAA
* * *
206618650 CCGGGCTAAGTCCCGAAGGTATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
206618690 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
206618730 CTGGGCTAGGTCCTGAAGGCATTTGTTCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
206618770 CTGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
206618810 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
206618850 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
206618868 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 17 0.11
40 143 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:206621329 original size:40 final size:40
Alignment explanation
Indices: 206621221--206621430 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
206621211 CGGGATTTAA
* * * * *
206621221 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
206621261 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206621301 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206621341 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206621381 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206621421 CCGGATATAT
1 CCGGATATAT
206621431 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:206629464 original size:40 final size:40
Alignment explanation
Indices: 206629356--206629563 Score: 287
Period size: 40 Copynumber: 5.2 Consensus size: 40
206629346 CGGGATTTAA
* * * * *
206629356 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
206629396 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206629436 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206629476 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206629516 CCGGATATATCAACTCG--CGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
206629554 CCGGATATAT
1 CCGGATATAT
206629564 TTCCAATGTT
Statistics
Matches: 151, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
38 31 0.21
39 1 0.01
40 119 0.79
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:206633677 original size:40 final size:38
Alignment explanation
Indices: 206633628--206633735 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
206633618 ATCACGATTT
*
206633628 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
206633668 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
206633708 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
206633736 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:206638386 original size:20 final size:20
Alignment explanation
Indices: 206638345--206638386 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
206638335 CTAAATCGAT
* *
206638345 AACTTAGGAATATTTTACAA
1 AACTTAGAAATATTTTAAAA
*
206638365 AACTTAGAAATTTTTTAAAA
1 AACTTAGAAATATTTTAAAA
206638385 AA
1 AA
206638387 TACAGGGGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (20 bp):
AACTTAGAAATATTTTAAAA
Found at i:206644077 original size:53 final size:53
Alignment explanation
Indices: 206643895--206644098 Score: 185
Period size: 53 Copynumber: 3.8 Consensus size: 53
206643885 AGGGTTTAAG
* * * * * *
206643895 GATACCAAGTAAGACCATGCCAAGGCATGGCACTGGTAAGCTTTACAAGG-AAA
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGCAAA
* * * * * * * *
206643948 GGAAATCATGTAAGACCATGTCAAGATATGGCATTGATAAACTACTATAAGGCAAA
1 -GATACCACGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAA
* * * *
206644004 GATCCCATGTAAGACCATGTCAAGGCATGGCAATGGTGAGTTCATAAGGCAAA
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
* *
206644057 GATACCACGTAAGACTATGTCAAGACATTGCAATGGTAAGTT
1 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
206644099 TAAAAAGAAA
Statistics
Matches: 119, Mismatches: 28, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
53 46 0.39
54 33 0.28
55 37 0.31
56 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.22
Consensus pattern (53 bp):
GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:206644209 original size:16 final size:16
Alignment explanation
Indices: 206644188--206644219 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
206644178 GTAACGCCCC
206644188 AAAAATCCCAAAATCT
1 AAAAATCCCAAAATCT
*
206644204 AAAAATCCCTAAATCT
1 AAAAATCCCAAAATCT
206644220 TGAATTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAAATCCCAAAATCT
Found at i:206645463 original size:16 final size:16
Alignment explanation
Indices: 206645442--206645472 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
206645432 ATTGGCAAAA
206645442 GCCAAAATGCCGAAAT
1 GCCAAAATGCCGAAAT
*
206645458 GCCAAAATGTCGAAA
1 GCCAAAATGCCGAAA
206645473 AGCTGAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.23, G:0.19, T:0.13
Consensus pattern (16 bp):
GCCAAAATGCCGAAAT
Found at i:206645745 original size:29 final size:29
Alignment explanation
Indices: 206645705--206645804 Score: 112
Period size: 29 Copynumber: 3.5 Consensus size: 29
206645695 AATGTGACTA
*
206645705 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * *
206645734 GGCCTAATGGGCCATATATAGGTGGTTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * * *
206645763 AGCCTAATCGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
206645791 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
206645805 GATATAGGTA
Statistics
Matches: 57, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
28 14 0.25
29 43 0.75
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:206649335 original size:29 final size:28
Alignment explanation
Indices: 206649279--206649393 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
206649269 GTGAGCATGA
* * *
206649279 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
206649307 ATATAAATGTGATTTGGGCCTAATAGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
206649336 ATATACAA-GTGGTTTGAGCCTAATGGGCC
1 ATATA-AATGT-GATTGGGCCTAATGGGCC
* * *
206649365 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
206649393 A
1 A
206649394 GATATAGGTA
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 29 0.41
29 39 0.55
30 3 0.04
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:206659079 original size:46 final size:45
Alignment explanation
Indices: 206658939--206659079 Score: 123
Period size: 46 Copynumber: 3.0 Consensus size: 45
206658929 GCCCATAAGC
* *
206658939 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT--C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CTAGT
*
206658986 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T-AGT
206659032 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCTAGT
206659078 GA
1 GA
206659080 CATGTCACTT
Statistics
Matches: 80, Mismatches: 4, Indels: 21
0.76 0.04 0.20
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 34 0.43
47 29 0.36
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCTAGT
Found at i:206661440 original size:14 final size:14
Alignment explanation
Indices: 206661421--206661480 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
206661411 CAAAGATAAC
206661421 AAGAAAACCGAATA
1 AAGAAAACCGAATA
* *
206661435 AAGAAATCC-AAGA
1 AAGAAAACCGAATA
*
206661448 TAGAGAAACCGAATA
1 AAGA-AAACCGAATA
*
206661463 AA-AAATCCAGAATA
1 AAGAAAACC-GAATA
206661477 AAGA
1 AAGA
206661481 GATCCAGGAT
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
13 10 0.29
14 20 0.57
15 5 0.14
ACGTcount: A:0.62, C:0.13, G:0.15, T:0.10
Consensus pattern (14 bp):
AAGAAAACCGAATA
Found at i:206661487 original size:15 final size:15
Alignment explanation
Indices: 206661421--206661497 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
206661411 CAAAGATAAC
*
206661421 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
206661435 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
206661450 GAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
206661463 AA-AAATCCAGAATA
1 AAGAAATCCAGAATA
* *
206661477 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
206661492 AAGAAA
1 AAGAAA
206661498 CCCAAGATAC
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
12 3 0.06
13 6 0.12
14 19 0.37
15 23 0.45
ACGTcount: A:0.60, C:0.13, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:206661506 original size:15 final size:15
Alignment explanation
Indices: 206661432--206661506 Score: 68
Period size: 15 Copynumber: 5.2 Consensus size: 15
206661422 AGAAAACCGA
206661432 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
206661447 ATAGAGAAA-CCGA-
1 ATAAAGAAATCCAAG
206661460 ATAAA-AAATCC-AG
1 ATAAAGAAATCCAAG
* *
206661473 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
206661489 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
206661504 ATA
1 ATA
206661507 CGATACTATG
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
12 4 0.09
13 6 0.13
14 8 0.17
15 28 0.60
16 1 0.02
ACGTcount: A:0.57, C:0.15, G:0.16, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:206663564 original size:29 final size:29
Alignment explanation
Indices: 206663532--206663663 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
206663522 ATAGTGAATC
206663532 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
206663561 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
206663591 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
206663620 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
206663649 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
206663664 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:206663673 original size:59 final size:59
Alignment explanation
Indices: 206663532--206663663 Score: 239
Period size: 59 Copynumber: 2.3 Consensus size: 59
206663522 ATAGTGAATC
206663532 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* *
206663591 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
206663649 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
206663664 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 24 0.34
59 47 0.66
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:206664149 original size:2 final size:2
Alignment explanation
Indices: 206664142--206664166 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
206664132 CATACTTATG
206664142 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
206664167 GGCATCACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:206665037 original size:19 final size:18
Alignment explanation
Indices: 206665013--206665048 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
206665003 CCCCCTTTTT
*
206665013 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
206665032 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
206665049 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:206671258 original size:29 final size:29
Alignment explanation
Indices: 206671226--206671387 Score: 252
Period size: 29 Copynumber: 5.5 Consensus size: 29
206671216 ATAGTGAATC
206671226 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
206671255 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
206671285 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
206671314 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
* * * *
206671343 CGCACACTTAGTGCTATACAATTTTTAAACC
1 CGCACACTTAGTGCTATA-TA-TTTTCAGCT
206671374 CGCACACTTAGTGC
1 CGCACACTTAGTGC
206671388 CAATCTTGTC
Statistics
Matches: 124, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
29 75 0.60
30 30 0.24
31 19 0.15
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.36
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:206671318 original size:59 final size:58
Alignment explanation
Indices: 206671226--206671387 Score: 252
Period size: 59 Copynumber: 2.7 Consensus size: 58
206671216 ATAGTGAATC
206671226 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGCT
*
206671285 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
* * * *
206671343 CGCACACTTAGTGCTATACAATTTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TA-TTTTCAGCTCGCACACTTAGTGC
206671388 CAATCTTGTC
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
58 27 0.28
59 49 0.51
60 20 0.21
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.36
Consensus pattern (58 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATATTTTCAGCT
Found at i:206672680 original size:19 final size:18
Alignment explanation
Indices: 206672656--206672691 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
206672646 CCCCCTTTTT
*
206672656 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
206672675 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
206672692 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:206673858 original size:27 final size:26
Alignment explanation
Indices: 206673820--206673882 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 26
206673810 GTAAATTATC
* *
206673820 AAAAAAATAAAGAACACCAAGAAGAA
1 AAAAAAAAAAAGAACAACAAGAAGAA
* *
206673846 AAAAAAGAAAAAGAAGAAGAAGAAGAA
1 AAAAAA-AAAAAGAACAACAAGAAGAA
*
206673873 AGAAAAAAAA
1 AAAAAAAAAA
206673883 GAATGGGAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 10 0.32
27 21 0.68
ACGTcount: A:0.78, C:0.05, G:0.16, T:0.02
Consensus pattern (26 bp):
AAAAAAAAAAAGAACAACAAGAAGAA
Found at i:206674623 original size:2 final size:2
Alignment explanation
Indices: 206674570--206674606 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
206674560 CAATTTTAGA
206674570 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
206674607 AGAAAACTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:206675725 original size:40 final size:40
Alignment explanation
Indices: 206675600--206675920 Score: 187
Period size: 40 Copynumber: 8.2 Consensus size: 40
206675590 GTTTGGATAA
*
206675600 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * **
206675640 AAAAATACCGCTATAGATCGAGTATTAGTGG-GCTTTTCA
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
*
206675679 AAAAATGCCGCTATA-AGTCGACCATTAGCGGCGCTTTTTG
1 AAAAATGCCGCTATAGA-TCGAGCATTAGCGGCGCTTTTTG
* * ** * * * *
206675719 AAAAATGCCG-TAAAAAAATTAAGCA-CAACGTCGTCGTTTT-
1 AAAAATGCCGCT--ATAGATCGAGCATTAGCGGCG-CTTTTTG
* ** * *
206675759 --ATAT-TAGTTGTAG--CG-GCATTAGCGGCGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * * ** *
206675793 AAAAACGCTGCTATAGATTGAACATTAGCAACGCTTTTTA
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * * *
206675833 AAAAATGCCACTATAGGTCGACCACTAGCGGCGCTTTTTT
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * * * *
206675873 AAAAACGCCGCTATAGATCGAGCTTTACCGTCGCTTTATC
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
206675913 AAAAATGC
1 AAAAATGC
206675921 TACAAAAAAT
Statistics
Matches: 202, Mismatches: 64, Indels: 30
0.68 0.22 0.10
Matches are distributed among these distances:
33 8 0.04
34 5 0.02
36 3 0.01
37 6 0.03
38 5 0.02
39 33 0.16
40 130 0.64
41 11 0.05
42 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (40 bp):
AAAAATGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
Found at i:206675989 original size:21 final size:21
Alignment explanation
Indices: 206675964--206676004 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
206675954 TAACTGGTTT
206675964 ATTTA-TATTAATTGAAATACA
1 ATTTATTATTAATT-AAATACA
*
206675985 ATTTATTTTTAATTAAATAC
1 ATTTATTATTAATTAAATAC
206676005 TTAAATTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTTATTATTAATTAAATACA
Found at i:206676179 original size:14 final size:14
Alignment explanation
Indices: 206676160--206676209 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
206676150 TTAATTATCA
206676160 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
206676174 TTATAGTTTAGGAT
1 TTATAGTTTAGGGT
* *
206676188 GTATGGTTTAGGGT
1 TTATAGTTTAGGGT
206676202 TTA-AGTTT
1 TTATAGTTT
206676210 TAAAAGTTAC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 4 0.13
14 26 0.87
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:206676333 original size:7 final size:7
Alignment explanation
Indices: 206676246--206676385 Score: 50
Period size: 7 Copynumber: 19.0 Consensus size: 7
206676236 TATGGATTAT
206676246 GGGTTTA
1 GGGTTTA
* *
206676253 GAGATTA
1 GGGTTTA
*
206676260 TGGTTTA
1 GGGTTTA
*
206676267 TGGTTTAA
1 GGGTTT-A
*
206676275 GGG-TTG
1 GGGTTTA
206676281 GGGTTTA
1 GGGTTTA
*
206676288 AGGTTTA
1 GGGTTTA
206676295 GGGGTGATATA
1 -GGGT--T-TA
*
206676306 TGGGTTAA
1 -GGGTTTA
206676314 GGG-TTA
1 GGGTTTA
206676320 GGGGTTTA
1 -GGGTTTA
206676328 GGGTTTA
1 GGGTTTA
* *
206676335 TGATTTA
1 GGGTTTA
* *
206676342 TGCTTTA
1 GGGTTTA
* *
206676349 TGATTTA
1 GGGTTTA
206676356 GGGTTTA
1 GGGTTTA
**
206676363 TGGGGATA
1 -GGGTTTA
206676371 GGGGTTTA
1 -GGGTTTA
206676379 GGGTTTA
1 GGGTTTA
206676386 TATTAATTAG
Statistics
Matches: 100, Mismatches: 24, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
6 5 0.05
7 67 0.67
8 20 0.20
9 1 0.01
10 1 0.01
11 6 0.06
ACGTcount: A:0.20, C:0.01, G:0.38, T:0.41
Consensus pattern (7 bp):
GGGTTTA
Found at i:206676341 original size:14 final size:14
Alignment explanation
Indices: 206676324--206676364 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
206676314 GGGTTAGGGG
206676324 TTTAGGGTTTATGA
1 TTTAGGGTTTATGA
* *
206676338 TTTATGCTTTATGA
1 TTTAGGGTTTATGA
206676352 TTTAGGGTTTATG
1 TTTAGGGTTTATG
206676365 GGGATAGGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.54
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:206676751 original size:21 final size:21
Alignment explanation
Indices: 206676727--206676773 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
206676717 TTAGGGAGTA
206676727 GGTTTATGGTCTAAGATTTAG
1 GGTTTATGGTCTAAGATTTAG
* *
206676748 GGTTTATGGTCTAGGATTTGG
1 GGTTTATGGTCTAAGATTTAG
206676769 GGTTT
1 GGTTT
206676774 GGTATTTGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.04, G:0.34, T:0.45
Consensus pattern (21 bp):
GGTTTATGGTCTAAGATTTAG
Found at i:206677690 original size:42 final size:42
Alignment explanation
Indices: 206677575--206677682 Score: 146
Period size: 42 Copynumber: 2.6 Consensus size: 42
206677565 GAAAAAAATC
* * * * *
206677575 AAAATTGAGCAATGGGGGCGTTTTTAGG-TAAAACGCCACAA
1 AAAATTGAGCTATAGTGGCGTTTTTCGGAAAAAACGCCACAA
* *
206677616 AAAGTTGAGCTATAGTGGCGTTTTTCGGAAAAAACGCCATAA
1 AAAATTGAGCTATAGTGGCGTTTTTCGGAAAAAACGCCACAA
206677658 AAAATTGAGCTATAGTGGCGTTTTT
1 AAAATTGAGCTATAGTGGCGTTTTT
206677683 GATAAAAAGG
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
41 23 0.40
42 35 0.60
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (42 bp):
AAAATTGAGCTATAGTGGCGTTTTTCGGAAAAAACGCCACAA
Found at i:206677702 original size:41 final size:42
Alignment explanation
Indices: 206677575--206677702 Score: 145
Period size: 42 Copynumber: 3.1 Consensus size: 42
206677565 GAAAAAAATC
* * * *
206677575 AAAATTGAGCAATGGGGGCGTTTTTAGGT-AAAACGCCACAA
1 AAAATTGAGCTATAGTGGCGTTTTTAGATAAAAACGCCACAA
* * *
206677616 AAAGTTGAGCTATAGTGGCGTTTTTCGGA-AAAAACGCCATAA
1 AAAATTGAGCTATAGTGGCGTTTTT-AGATAAAAACGCCACAA
* *
206677658 AAAATTGAGCTATAGTGGCGTTTTT-GATAAAAAGGCAACAA
1 AAAATTGAGCTATAGTGGCGTTTTTAGATAAAAACGCCACAA
206677699 AAAA
1 AAAA
206677703 CCACTATTTT
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 2 0.03
41 35 0.48
42 36 0.49
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.24
Consensus pattern (42 bp):
AAAATTGAGCTATAGTGGCGTTTTTAGATAAAAACGCCACAA
Found at i:206679808 original size:15 final size:15
Alignment explanation
Indices: 206679790--206679824 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
206679780 TTTTCTTCTT
*
206679790 TTTTTTTGGGTTAGG
1 TTTTTTTGGGGTAGG
206679805 TTTTTTTGGGGTAGG
1 TTTTTTTGGGGTAGG
206679820 TTTTT
1 TTTTT
206679825 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.00, G:0.31, T:0.63
Consensus pattern (15 bp):
TTTTTTTGGGGTAGG
Found at i:206679837 original size:14 final size:13
Alignment explanation
Indices: 206679820--206679858 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
206679810 TTGGGGTAGG
*
206679820 TTTTTCTTTTTCTT
1 TTTTTTTTTTTC-T
206679834 TTTTTTTTTTTCT
1 TTTTTTTTTTTCT
206679847 TTGTTTTTTTTT
1 TT-TTTTTTTTT
206679859 GGGTTAGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 3 0.13
14 20 0.87
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.90
Consensus pattern (13 bp):
TTTTTTTTTTTCT
Found at i:206679843 original size:20 final size:20
Alignment explanation
Indices: 206679820--206679858 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
206679810 TTGGGGTAGG
206679820 TTTTTCTTT-TTCTTTTTTTT
1 TTTTTCTTTGTT-TTTTTTTT
206679840 TTTTTCTTTGTTTTTTTTT
1 TTTTTCTTTGTTTTTTTTT
206679859 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.90
Consensus pattern (20 bp):
TTTTTCTTTGTTTTTTTTTT
Found at i:206679856 original size:47 final size:48
Alignment explanation
Indices: 206679768--206679871 Score: 131
Period size: 47 Copynumber: 2.2 Consensus size: 48
206679758 CTTTTTTTGT
*
206679768 TAGGTTTTTCTTTTTTCTTCTTTTTTTTTGGGTTAGGTTTTTTTGGGG
1 TAGGTTTTTCTTTTTTCTTCTTTTTTTTTGGCTTAGGTTTTTTTGGGG
** * * *
206679816 TAGGTTTTTC-TTTTTCTT-TTTTTTTTTTTCTTTGTTTTTTTTTGGGT
1 TAGGTTTTTCTTTTTTCTTCTTTTTTTTTGGCTTAG-GTTTTTTTGGGG
206679863 TAGGTTTTT
1 TAGGTTTTT
206679872 TTGGGGGGCT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
46 12 0.24
47 27 0.55
48 10 0.20
ACGTcount: A:0.04, C:0.06, G:0.18, T:0.72
Consensus pattern (48 bp):
TAGGTTTTTCTTTTTTCTTCTTTTTTTTTGGCTTAGGTTTTTTTGGGG
Found at i:206680706 original size:30 final size:30
Alignment explanation
Indices: 206680670--206680731 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
206680660 TTTTGAAAAA
206680670 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
206680700 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
206680730 CA
1 CA
206680732 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:206680850 original size:14 final size:14
Alignment explanation
Indices: 206680827--206680861 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
206680817 TGAGTTGATT
206680827 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
206680840 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
206680854 TTTGAAAA
1 TTTGAAAA
206680862 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:206681162 original size:72 final size:73
Alignment explanation
Indices: 206680879--206681412 Score: 381
Period size: 72 Copynumber: 6.8 Consensus size: 73
206680869 ACATGTAACC
* * * *
206680879 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
206680944 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
206680957 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
206681022 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
206681035 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
206681100 ACGTGTCT
66 GCGTGTCT
* ** * * *
206681108 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
206681172 GCGTGTCC
66 GCGTGTCT
*
206681180 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTTTTGAAATGCAGAAATTGA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---------TTTTTTGAAA-ACAGAAATTG-
** ** *
206681245 AAAATGGAAATTGAAAATACCTCGACGTGTGAT
55 ---A---AAA-T--ACCT-CAGC---GTGT-CT
* * * *
206681278 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAATAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
206681343 CAGCGTGTC-
64 CAGCGTGTCT
* *
206681352 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
206681413 ACGGAAATTG
Statistics
Matches: 364, Mismatches: 58, Indels: 71
0.74 0.12 0.14
Matches are distributed among these distances:
72 65 0.18
73 29 0.08
74 43 0.12
75 31 0.09
76 14 0.04
77 41 0.11
78 5 0.01
79 51 0.14
80 2 0.01
82 9 0.02
83 11 0.03
86 1 0.00
87 1 0.00
90 10 0.03
91 10 0.03
93 2 0.01
94 2 0.01
97 4 0.01
98 1 0.00
99 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:206681367 original size:173 final size:168
Alignment explanation
Indices: 206681076--206681555 Score: 695
Period size: 165 Copynumber: 2.9 Consensus size: 168
206681066 TGATTTTTTG
* * * ** * *
206681076 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
206681139 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
206681203 ATATGAGTTGATTTTTTTTTTTTTTTGAAATGCAGAAATTGA
131 ATATGAGTTGA----TTTTTTTTTTTGAAAGGCAAAAATTGA
*
206681245 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
*
206681310 TGACTTTTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
206681375 AATATGAGTTGA----TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
* * * *
206681410 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
206681475 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
206681540 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
206681556 GAAAAAGTAG
Statistics
Matches: 282, Mismatches: 21, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
165 156 0.55
169 27 0.10
170 1 0.00
171 30 0.11
173 68 0.24
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (168 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
Found at i:206681374 original size:74 final size:75
Alignment explanation
Indices: 206681251--206681395 Score: 222
Period size: 74 Copynumber: 1.9 Consensus size: 75
206681241 TTGAAAAATG
*
206681251 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
206681316 TTTTGACAATA
65 TTTTGACAATA
* * *
206681327 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
206681390 TTTTGA
65 TTTTGA
206681396 AAGGCAAAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
75 1 0.02
76 21 0.33
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAATA
Found at i:206681541 original size:74 final size:75
Alignment explanation
Indices: 206681416--206681555 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
206681406 TTGAAAAACG
* *
206681416 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
206681481 TTTTGACAACA
65 TTTTGACAACA
* * *
206681492 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
206681556 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:206681754 original size:72 final size:71
Alignment explanation
Indices: 206681620--206681785 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
206681610 TGAACAACGT
* * * *
206681620 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
206681685 GAGTTG
66 GAGTTG
*
206681691 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
206681756 TGAGTTG
65 TGAGTTG
**
206681763 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
206681786 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:206681880 original size:122 final size:122
Alignment explanation
Indices: 206681660--206682148 Score: 560
Period size: 122 Copynumber: 3.9 Consensus size: 122
206681650 GCGTGACCTG
* * * *
206681660 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACAAAAACTAAAAATACCTCAGCG
206681725 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
63 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
* *
206681785 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAAACTAAAAATACCTCAGCGTGC
* *
206681850 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAAATACCTC
66 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT----A-A----
206681914 A
122 A
* * ** * * *
206681915 ACGTGTCTTGAGGCTCAACTCATCTCTGCAATATGAGTTGATTAAAACACAAAAATTGAAAATAC
1 A-G-G-C-TCA-ACTC-AC-C-TCTC-GCAATATGAGTCAATTTAAA-ACAAAAACTAAAAATAC
206681980 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTA
56 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTA
206682045 AA
121 AA
* *
206682047 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTT------AAAACTAAAAATACCTCAGCGTGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAAACTAAAAATACCTCAGCGTGC
* *
206682106 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAA
66 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAA
206682149 CAACGTAAAT
Statistics
Matches: 316, Mismatches: 28, Indels: 49
0.80 0.07 0.12
Matches are distributed among these distances:
116 62 0.20
121 12 0.04
122 63 0.20
123 21 0.07
124 5 0.02
125 29 0.09
126 3 0.01
127 3 0.01
128 2 0.01
129 1 0.00
130 3 0.01
131 2 0.01
132 3 0.01
133 1 0.00
134 2 0.01
135 3 0.01
136 3 0.01
137 2 0.01
138 4 0.01
139 17 0.05
140 63 0.20
141 12 0.04
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (122 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAAACTAAAAATACCTCAGCGTGC
CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:206681928 original size:71 final size:71
Alignment explanation
Indices: 206681785--206682047 Score: 347
Period size: 69 Copynumber: 3.7 Consensus size: 71
206681775 AAAAATTAAA
* * * * *
206681785 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
206681848 GCCCCG
66 GCCCCG
* *
206681854 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
206681919 GTCTTG
66 GCCCCG
* * *
206681925 AGGCTCAACTCATCTCT-GCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
206681987 TGCCCCG
65 TGCCCCG
*
206681994 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
206682048 GGCTTAACTC
Statistics
Matches: 166, Mismatches: 21, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
68 5 0.03
69 68 0.41
70 33 0.20
71 43 0.26
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:206682233 original size:535 final size:538
Alignment explanation
Indices: 206681588--206683030 Score: 2396
Period size: 535 Copynumber: 2.7 Consensus size: 538
206681578 TCAACCTACC
206681588 TCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCG
1 TCTCGCAATATGAGTTGATT-TTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCG
206681653 TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATAC
65 TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATAC
206681718 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTA
130 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTA
206681783 AAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGT
195 AAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGT
206681848 GCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCT
260 GCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCT
206681913 CAACGTGTCTTGAGGCTCAACTCATCTCT-GCAATATGAGTTGATTAAAACACAAAAATTGAAAA
325 CAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAA
206681977 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAA
390 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAA
206682042 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT-A-AAACTAAAAATACCTCAGCGTG
455 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAATAAACTAAAAATACCTCAGCGTG
*
206682105 TCCCGAGGCTCAACTCACT
520 CCCCGAGGCTCAACTCACT
206682124 TCTCGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGT
1 TCTCGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGT
206682189 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACC
66 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACC
206682254 TCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAA
131 TCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAA
206682319 AAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
196 AAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
206682384 CCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGA
261 CCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT-TTGAA-AAC-----------A-A-A
* * * * *
206682449 AATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAA
311 AATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTG--ATTAAA
206682514 ACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA
374 ACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA
206682579 TTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAA
439 TTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT---A-ATAA
206682644 ACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACT
500 ACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACT
* *
206682683 TCTCGCAATATGAGTTGATTTTGAA-AAC-----------A-A-AAATTAAAAATACCTCAACGT
1 TCTCGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGT
* * *
206682734 GTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTG--ATTAAAACACAAAAATTGAAAATACC
66 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACC
206682797 TCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAA
131 TCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAA
206682862 AAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT-----A-AAACTAAAAATACCTCAGCGTG
196 AAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
* *
206682921 TCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAACAATTAAAAATACCTC
261 CCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTC
206682986 AACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATT
326 AACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATT
206683031 TTCCTTGAAA
Statistics
Matches: 865, Mismatches: 18, Indels: 64
0.91 0.02 0.07
Matches are distributed among these distances:
520 3 0.00
522 52 0.06
523 1 0.00
524 1 0.00
535 282 0.33
536 30 0.03
537 63 0.07
538 1 0.00
543 127 0.15
545 53 0.06
546 1 0.00
547 1 0.00
548 1 0.00
549 1 0.00
550 39 0.05
551 13 0.02
553 127 0.15
558 4 0.00
559 65 0.08
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (538 bp):
TCTCGCAATATGAGTTGATTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGT
GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACC
TCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAA
AAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
CCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTC
AACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAAT
ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAAT
TAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAATAAACTAAAAATACCTCAGCGTGC
CCCGAGGCTCAACTCACT
Found at i:206682244 original size:85 final size:85
Alignment explanation
Indices: 206682089--206682249 Score: 234
Period size: 85 Copynumber: 1.9 Consensus size: 85
206682079 TTTAAAACTA
* * * ** *
206682089 AAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACG
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAAACAACA
*
206682154 TAAATTGAAAACAGAAATTG
66 AAAATTGAAAACAGAAATTG
*
206682174 AAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC-AC
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG-AATTAAAACAAC
206682238 AAAAATTGAAAA
65 AAAAATTGAAAA
206682250 TACCTCAGCG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
85 61 0.91
86 6 0.09
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.24
Consensus pattern (85 bp):
AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAAACAACA
AAAATTGAAAACAGAAATTG
Found at i:206682289 original size:72 final size:71
Alignment explanation
Indices: 206682155--206682320 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
206682145 TGAACAACGT
* * * *
206682155 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
206682220 GAGTTG
66 GAGTTG
*
206682226 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
206682291 TGAGTTG
65 TGAGTTG
**
206682298 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
206682321 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:206682415 original size:122 final size:126
Alignment explanation
Indices: 206682195--206682428 Score: 368
Period size: 122 Copynumber: 1.9 Consensus size: 126
206682185 GCGTGACCTG
* *
206682195 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
206682260 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATT-TTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTCTTGAAAAACAAAAATTAAA
* * * *
206682320 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
206682382 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTCTTGAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTCTTGAA
206682429 CAACGTAAAT
Statistics
Matches: 100, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
122 60 0.60
123 12 0.12
124 1 0.01
125 27 0.27
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.25
Consensus pattern (126 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTCTTGAAAAACAAAAATTAAA
Found at i:206682555 original size:280 final size:271
Alignment explanation
Indices: 206681888--206683030 Score: 1786
Period size: 280 Copynumber: 4.3 Consensus size: 271
206681878 TGAGTTGATT
* * * *
206681888 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCT-GCAATATGAG
1 TTGAAAACAGAAATTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
206681952 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
206682017 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
206682082 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
196 AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
206682147 AACAACGTAAA
261 AACAACGTAAA
* *
206682158 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
206682223 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
206682288 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
129 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
206682353 TTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
194 TT-----A-AAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
206682418 TGATTCTTGAACAACGTAAA
253 TGATT-TTGAACAACGTAAA
* *
206682438 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
206682503 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
206682568 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
129 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
206682633 TTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
194 TT-----A-AAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
206682698 TGATTTTGAA-AAC-----
253 TGATTTTGAACAACGTAAA
* * *
206682711 ------A-A-AAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAGAAATTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
206682768 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
206682833 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
206682898 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
196 AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
206682963 AA-AAC-----
261 AACAACGTAAA
* * *
206682968 -----AAC---AATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAGAAATTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
206683025 TTGATT
66 TTGATT
206683031 TTCCTTGAAA
Statistics
Matches: 848, Mismatches: 13, Indels: 37
0.94 0.01 0.04
Matches are distributed among these distances:
257 128 0.15
258 2 0.00
263 127 0.15
265 53 0.06
266 1 0.00
267 1 0.00
270 48 0.06
271 13 0.02
273 127 0.15
278 4 0.00
279 65 0.08
280 279 0.33
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (271 bp):
TTGAAAACAGAAATTAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
AACAACGTAAA
Found at i:206682569 original size:72 final size:71
Alignment explanation
Indices: 206682435--206682600 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
206682425 TGAACAACGT
* * * *
206682435 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
206682500 GAGTTG
66 GAGTTG
*
206682506 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
206682571 TGAGTTG
65 TGAGTTG
**
206682578 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
206682601 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:206682743 original size:71 final size:71
Alignment explanation
Indices: 206682600--206682863 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
206682590 AAAAATTAAA
* * * * *
206682600 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
206682663 GCCCCG
66 GCCCCG
* *
206682669 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
206682734 GTCTTG
66 GCCCCG
* * *
206682740 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
206682803 TGCCCCG
65 TGCCCCG
*
206682810 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
206682864 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 58 0.35
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:206682821 original size:70 final size:69
Alignment explanation
Indices: 206682600--206682863 Score: 339
Period size: 71 Copynumber: 3.7 Consensus size: 69
206682590 AAAAATTAAA
* ** * * *
206682600 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
206682665 CCCG
66 CCCG
* * *
206682669 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
206682734 GTCTTG
64 GCCCCG
* *
206682740 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
206682805 CCCCG
65 CCCCG
*
206682810 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
206682864 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 60 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:206688073 original size:12 final size:12
Alignment explanation
Indices: 206688053--206688088 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
206688043 TGGGATATGC
*
206688053 AATGTATGAATG
1 AATGCATGAATG
206688065 AATGCATGAATG
1 AATGCATGAATG
206688077 AATGCATGAATG
1 AATGCATGAATG
206688089 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:206690152 original size:39 final size:40
Alignment explanation
Indices: 206690021--206690152 Score: 117
Period size: 39 Copynumber: 3.3 Consensus size: 40
206690011 ATAATTTGTA
* * *
206690021 ATAATA-ATATATACACAATATGGTATTTAAAATATATATAT
1 ATAATATATATATACACTA-ATGGTA-TTAAAAAATATATAC
* * * * *
206690062 ATATATATATGTATATA-TAATAGTATTTAAGAATATATAC
1 ATA-ATATATATATACACTAATGGTATTAAAAAATATATAC
* * *
206690102 ATAAGAAATATATA-ACTAATGGCATTAAAAAATATATAC
1 ATAATATATATATACACTAATGGTATTAAAAAATATATAC
206690141 ATAATATATATA
1 ATAATATATATA
206690153 AAATACCTAA
Statistics
Matches: 71, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 1 0.01
39 37 0.52
40 14 0.20
41 8 0.11
42 4 0.06
43 7 0.10
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.37
Consensus pattern (40 bp):
ATAATATATATATACACTAATGGTATTAAAAAATATATAC
Found at i:206690677 original size:15 final size:14
Alignment explanation
Indices: 206690659--206690692 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
206690649 TTTTCTTCTT
206690659 TTTTTTTGGGTTAGG
1 TTTTTTTGGG-TAGG
206690674 TTTTTTTGGGTAGG
1 TTTTTTTGGGTAGG
206690688 TTTTT
1 TTTTT
206690693 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.06, C:0.00, G:0.29, T:0.65
Consensus pattern (14 bp):
TTTTTTTGGGTAGG
Found at i:206690740 original size:1 final size:1
Alignment explanation
Indices: 206690688--206690724 Score: 56
Period size: 1 Copynumber: 37.0 Consensus size: 1
206690678 TTTGGGTAGG
* *
206690688 TTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
206690725 GGGTTAGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.05, G:0.00, T:0.95
Consensus pattern (1 bp):
T
Found at i:206695596 original size:29 final size:29
Alignment explanation
Indices: 206695562--206695639 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
206695552 GTGACGAGAT
* *
206695562 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
206695591 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
206695620 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
206695640 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:206703248 original size:29 final size:29
Alignment explanation
Indices: 206703214--206703291 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
206703204 GTGACGAGAT
* *
206703214 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
206703243 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
206703272 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
206703292 CGGAGGTATG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:206706404 original size:24 final size:24
Alignment explanation
Indices: 206706354--206706407 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
206706344 AATCGAATTT
*
206706354 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
206706378 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
206706402 GCACAC
1 GCACAC
206706408 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:206710741 original size:40 final size:40
Alignment explanation
Indices: 206710662--206710838 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
206710652 CGGATGATAA
* * * *
206710662 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
206710702 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
206710742 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
206710782 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
206710822 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
206710839 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.12
40 102 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:206718907 original size:29 final size:29
Alignment explanation
Indices: 206718873--206718975 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
206718863 ATAATCAGCG
** *
206718873 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
206718902 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
206718931 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
206718960 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
206718976 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:206722013 original size:40 final size:40
Alignment explanation
Indices: 206721934--206722101 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
206721924 CAGATGATAA
* * **
206721934 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * *
206721974 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
*
206722014 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
*
206722054 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
206722094 CC-GGCTAA
1 CCGGGCTAA
206722102 ATCCCAAGAT
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
39 8 0.07
40 103 0.91
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:206726148 original size:40 final size:40
Alignment explanation
Indices: 206726089--206726230 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
206726079 AAATTGAATG
* * *
206726089 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
206726129 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
206726169 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
206726209 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
206726231 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:206726231 original size:40 final size:39
Alignment explanation
Indices: 206726128--206726256 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
206726118 TGCTGGAAAT
* * *
206726128 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
206726168 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
206726208 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
206726248 TATATCCGG
1 TATATCCGG
206726257 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:206734171 original size:40 final size:40
Alignment explanation
Indices: 206734112--206734253 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
206734102 AAATTGAATG
* * *
206734112 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
206734152 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
206734192 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
206734232 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
206734254 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:206734254 original size:40 final size:39
Alignment explanation
Indices: 206734151--206734279 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
206734141 TGCTGGAAAT
* * *
206734151 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
206734191 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
206734231 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
206734271 TATATCCGG
1 TATATCCGG
206734280 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:206741330 original size:40 final size:40
Alignment explanation
Indices: 206741275--206741409 Score: 234
Period size: 40 Copynumber: 3.4 Consensus size: 40
206741265 TATGTGCATA
* *
206741275 GCATTCATGTGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
206741315 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
206741355 GCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
206741395 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
206741410 GTTACATCCG
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:206741433 original size:80 final size:80
Alignment explanation
Indices: 206741285--206741433 Score: 217
Period size: 80 Copynumber: 1.9 Consensus size: 80
206741275 GCATTCATGT
* * ** *
206741285 GGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCC
1 GGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCGAGCCAAATCC
206741350 CGAAGGCATTCGTAC
66 CGAAGGCATTCGTAC
* * * *
206741365 GGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTACATCCGAGCCAAATTC
1 GGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCGAGCCAAATCC
206741430 CGAA
66 CGAA
206741434 AGTATTTATG
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 60 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (80 bp):
GGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCGAGCCAAATCC
CGAAGGCATTCGTAC
Found at i:206743167 original size:27 final size:28
Alignment explanation
Indices: 206743137--206743194 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 28
206743127 AACTCTTACA
* *
206743137 TTCCACACATAGGGGTATTTT-AGTCAT
1 TTCCACACATAGGGGCATTTTCAGTAAT
* * *
206743164 TTCCGCCCTTAGGGGCATTTTCAGTAAT
1 TTCCACACATAGGGGCATTTTCAGTAAT
206743192 TTC
1 TTC
206743195 TCTTTATTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (28 bp):
TTCCACACATAGGGGCATTTTCAGTAAT
Done.