Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 658 of 770
Found at i:206745919 original size:40 final size:40
Alignment explanation
Indices: 206745792--206745921 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
206745782 ATGCTGGAAA
* *
206745792 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
206745832 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
206745872 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
206745912 TTATATCCGG
1 TTATATCCGG
206745922 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:206753810 original size:40 final size:39
Alignment explanation
Indices: 206753744--206753909 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
206753734 AAATTGAATG
* * *
206753744 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
206753783 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
206753822 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
206753862 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
206753902 ATATCCGG
1 ATATCCGG
206753910 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:206758725 original size:40 final size:39
Alignment explanation
Indices: 206758560--206758743 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
206758550 AAATTGAATG
* * *
206758560 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
206758600 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
206758640 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
206758680 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
206758719 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
206758744 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:206758768 original size:80 final size:81
Alignment explanation
Indices: 206758600--206758788 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
206758590 GCTGGAAATT
* * * *
206758600 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
206758665 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
206758681 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
206758744 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
206758760 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
206758789 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:206766838 original size:40 final size:39
Alignment explanation
Indices: 206766673--206766856 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
206766663 AAATTGAATG
* * *
206766673 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
206766713 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
206766753 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
206766793 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
206766832 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
206766857 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:206766881 original size:80 final size:81
Alignment explanation
Indices: 206766713--206766901 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
206766703 GCTGGAAATT
* * * *
206766713 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
206766778 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
206766794 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
206766857 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
206766873 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
206766902 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:206775723 original size:40 final size:40
Alignment explanation
Indices: 206775626--206775805 Score: 195
Period size: 40 Copynumber: 4.5 Consensus size: 40
206775616 TCGAATGGTG
* * *
206775626 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
206775667 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
206775707 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
206775747 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
206775788 -CCGGGC-AATGTCCCGAAG
1 TCCGGGCTAA-GTCCCGAAG
206775806 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 2 0.02
40 88 0.75
41 28 0.24
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:206775761 original size:80 final size:81
Alignment explanation
Indices: 206775627--206775805 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 81
206775617 CGAATGGTGT
* * *
206775627 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
206775692 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * *
206775708 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * * *
206775771 TGTGCGAATCACTATAA
65 TGTGCGAGTTACCAAAA
206775788 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
206775806 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.04
80 57 0.67
81 25 0.29
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:206775818 original size:80 final size:80
Alignment explanation
Indices: 206775661--206775845 Score: 205
Period size: 80 Copynumber: 2.3 Consensus size: 80
206775651 GTGCTAAGTG
* * * *
206775661 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
* * *
206775726 GCATTCGTGCGAGTT
66 ACAATCGAGCGAGTT
* *
206775741 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-GTCCCGA
*
206775804 AGACAATCGAGCGAGTC
64 AGACAATCGAGCGAGTT
* * * *
206775821 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
206775846 TACGTGATTC
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
79 10 0.11
80 78 0.89
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
ACAATCGAGCGAGTT
Found at i:206775826 original size:40 final size:41
Alignment explanation
Indices: 206775627--206775831 Score: 147
Period size: 40 Copynumber: 5.1 Consensus size: 41
206775617 CGAATGGTGT
** * * *
206775627 CCGGGCTAA-GTCCCGAAGGCTTTTGTGCTAAGTGACTA-AA
1 CCGGGCTAATGTCCCGAAGGCAATCGTGC-GAGTCACTATAA
* * * * *
206775667 TCCGGG-TCAAT-TCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* * *
206775708 CCGGGTTAA-GTCCCGAAGGCATTCGTGCGAGTTACTA-AA
1 CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* *
206775747 TCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* * * *
206775788 CCGGGC-AATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
206775828 CCGG
1 CCGG
206775832 TTAAATTCCG
Statistics
Matches: 138, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
39 5 0.04
40 104 0.75
41 29 0.21
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.22
Consensus pattern (41 bp):
CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
Found at i:206783774 original size:40 final size:40
Alignment explanation
Indices: 206783677--206783856 Score: 195
Period size: 40 Copynumber: 4.5 Consensus size: 40
206783667 TCGAATGGTG
* * *
206783677 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
206783718 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
206783758 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
206783798 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
206783839 -CCGGGC-AATGTCCCGAAG
1 TCCGGGCTAA-GTCCCGAAG
206783857 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 2 0.02
40 88 0.75
41 28 0.24
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:206783812 original size:80 final size:81
Alignment explanation
Indices: 206783678--206783856 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 81
206783668 CGAATGGTGT
* * *
206783678 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
206783743 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * *
206783759 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * * *
206783822 TGTGCGAATCACTATAA
65 TGTGCGAGTTACCAAAA
206783839 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
206783857 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.04
80 57 0.67
81 25 0.29
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:206783869 original size:80 final size:80
Alignment explanation
Indices: 206783712--206783896 Score: 205
Period size: 80 Copynumber: 2.3 Consensus size: 80
206783702 GTGCTAAGTG
* * * *
206783712 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
* * *
206783777 GCATTCGTGCGAGTT
66 ACAATCGAGCGAGTT
* *
206783792 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-GTCCCGA
*
206783855 AGACAATCGAGCGAGTC
64 AGACAATCGAGCGAGTT
* * * *
206783872 GCTATATCCGGTTAAATT-CCGAAGG
1 ACTAAATCCGGGTCAATTCCCGAAGG
206783897 TACGTGATTC
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
79 10 0.11
80 78 0.89
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
ACAATCGAGCGAGTT
Found at i:206783877 original size:40 final size:41
Alignment explanation
Indices: 206783678--206783882 Score: 147
Period size: 40 Copynumber: 5.1 Consensus size: 41
206783668 CGAATGGTGT
** * * *
206783678 CCGGGCTAA-GTCCCGAAGGCTTTTGTGCTAAGTGACTA-AA
1 CCGGGCTAATGTCCCGAAGGCAATCGTGC-GAGTCACTATAA
* * * * *
206783718 TCCGGG-TCAAT-TCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* * *
206783759 CCGGGTTAA-GTCCCGAAGGCATTCGTGCGAGTTACTA-AA
1 CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* *
206783798 TCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
* * * *
206783839 CCGGGC-AATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
206783879 CCGG
1 CCGG
206783883 TTAAATTCCG
Statistics
Matches: 138, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
39 5 0.04
40 104 0.75
41 29 0.21
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.22
Consensus pattern (41 bp):
CCGGGCTAATGTCCCGAAGGCAATCGTGCGAGTCACTATAA
Found at i:206787994 original size:121 final size:121
Alignment explanation
Indices: 206787776--206787994 Score: 307
Period size: 121 Copynumber: 1.8 Consensus size: 121
206787766 GAATTATGTG
* * * * * *
206787776 AAATGAAATATGGATGTGTATGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AAATGAAACATGGATGTCTATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGGG
* **
206787841 CTAAGTCCCGAAGGCGATTATGCTAGTGATTATTTGTGTTTGAGCCTTAGTAACGA
66 CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
*
206787897 AAATGAAACAT-GATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAACATGGATGTCT-ATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
206787961 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTAT
65 GCTAAGTCCCGAAGACGA-TTATGCTAGAAATTAT
206787995 ATCCGGGTTA
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
120 7 0.08
121 78 0.92
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (121 bp):
AAATGAAACATGGATGTCTATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGGG
CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
Found at i:206788117 original size:40 final size:40
Alignment explanation
Indices: 206787991--206788119 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
206787981 ATGCTGGAAA
* *
206787991 TTATATCCGGGTTAAGA-CCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
206788030 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
206788070 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
206788110 TTATATCCGG
1 TTATATCCGG
206788120 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 18 0.23
40 59 0.77
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:206791357 original size:26 final size:26
Alignment explanation
Indices: 206791328--206791402 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 26
206791318 CCAAACTAAC
*
206791328 AAAATGATTATTTCCCCTTATGTGGT
1 AAAATGATTATTTGCCCTTATGTGGT
*
206791354 AAAATGATTGTTTTGCCCTTATGTGGT
1 AAAATGATT-ATTTGCCCTTATGTGGT
*
206791381 AAAATGACTATTTTGCCCTTAT
1 AAAATGATTA-TTTGCCCTTAT
206791403 ATGATAAGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 9 0.21
27 34 0.79
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.43
Consensus pattern (26 bp):
AAAATGATTATTTGCCCTTATGTGGT
Found at i:206791377 original size:27 final size:27
Alignment explanation
Indices: 206791342--206791430 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
206791332 TGATTATTTC
*
206791342 CCCTTATGTGGTAAAATGATTGTTTTG
1 CCCTTATGTGGTAAAATGACTGTTTTG
*
206791369 CCCTTATGTGGTAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTGTTTTG
* * *
206791396 CCCTTATATGATAAGATGACTGTTTTG
1 CCCTTATGTGGTAAAATGACTGTTTTG
*
206791423 CCCCTATG
1 CCCTTATG
206791431 CGAGGTATTT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACTGTTTTG
Found at i:206791420 original size:54 final size:53
Alignment explanation
Indices: 206791328--206791430 Score: 134
Period size: 54 Copynumber: 1.9 Consensus size: 53
206791318 CCAAACTAAC
* * * * *
206791328 AAAATGATTATTTCCCCTTATGTGGTAAAATGATTGTTTTGCCCTTATGTGGT
1 AAAATGACTATTTCCCCTTATATGATAAAATGACTGTTTTGCCCCTATGTGGT
* *
206791381 AAAATGACTATTTTGCCCTTATATGATAAGATGACTGTTTTGCCCCTATG
1 AAAATGACTA-TTTCCCCTTATATGATAAAATGACTGTTTTGCCCCTATG
206791431 CGAGGTATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 9 0.21
54 33 0.79
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.41
Consensus pattern (53 bp):
AAAATGACTATTTCCCCTTATATGATAAAATGACTGTTTTGCCCCTATGTGGT
Found at i:206793393 original size:35 final size:34
Alignment explanation
Indices: 206793321--206793393 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
206793311 TTCCATGCTA
* * *
206793321 AATTCAATTCGGCAATGTAGTTATACATACATAC
1 AATTCAATTCGGCAATGTAATAATAAATACATAC
* *
206793355 AATTCAATTCGGCTATGTACATAATAAATACATTC
1 AATTCAATTCGGCAATGTA-ATAATAAATACATAC
206793390 AATT
1 AATT
206793394 TAACATCATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 18 0.55
35 15 0.45
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (34 bp):
AATTCAATTCGGCAATGTAATAATAAATACATAC
Found at i:206797085 original size:93 final size:93
Alignment explanation
Indices: 206796967--206797139 Score: 242
Period size: 93 Copynumber: 1.9 Consensus size: 93
206796957 TGCCCATAAG
* * *
206796967 CGAACTCAGACTCAACTCAATGAGCTC-GAGCGTTCGCATCCATAAGTGAACTC-GAACGCAACT
1 CGAACTCAGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTAAACTCAG-ACGCAACT
206797030 CAACGAGTTCGGATGCCTAGTTAAATCTCA
64 CAACGAGTTCGGATGCCTAGTTAAATCTCA
* * * *
206797060 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCTATAAGTAAACTCAGACTCAATTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTAAACTCAGACGCAACTCA
*
206797125 ACGAGTTTGGATGCC
66 ACGAGTTCGGATGCC
206797140 AAATATCCTA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
93 67 0.96
94 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTAAACTCAGACGCAACTCA
ACGAGTTCGGATGCCTAGTTAAATCTCA
Found at i:206805347 original size:54 final size:54
Alignment explanation
Indices: 206805283--206805386 Score: 183
Period size: 54 Copynumber: 1.9 Consensus size: 54
206805273 CAAATTTTCA
206805283 AATTAAACATGATAATCTAAGAAG-ATATATTTATTTTTCATCATCAAACATGAT
1 AATTAAACATGATAATCTAA-AAGCATATATTTATTTTTCATCATCAAACATGAT
*
206805337 AATTAAACATGATAATCTAACAGCATATATTTATTTTTCATCATCAAACA
1 AATTAAACATGATAATCTAAAAGCATATATTTATTTTTCATCATCAAACA
206805387 ACAAAAACCA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
53 2 0.04
54 46 0.96
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (54 bp):
AATTAAACATGATAATCTAAAAGCATATATTTATTTTTCATCATCAAACATGAT
Found at i:206805358 original size:13 final size:13
Alignment explanation
Indices: 206805328--206805352 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
206805318 TTTCATCATC
206805328 AAACATGATAATT
1 AAACATGATAATT
206805341 AAACATGATAAT
1 AAACATGATAAT
206805353 CTAACAGCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (13 bp):
AAACATGATAATT
Found at i:206807401 original size:15 final size:16
Alignment explanation
Indices: 206807374--206807403 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
206807364 AGAGTACGAG
206807374 ATATGAGAATGTATAT
1 ATATGAGAATGTATAT
206807390 ATATGA-AATGTATA
1 ATATGAGAATGTATA
206807404 ATCTTTACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.37
Consensus pattern (16 bp):
ATATGAGAATGTATAT
Found at i:206810264 original size:40 final size:40
Alignment explanation
Indices: 206810179--206810329 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
206810169 AATTGAATGA
* * *
206810179 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
206810219 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
206810260 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
206810299 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
206810330 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:206810343 original size:40 final size:40
Alignment explanation
Indices: 206810216--206810345 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
206810206 ATGCTGGAAA
* * * *
206810216 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
206810256 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
206810296 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
206810336 TTATATCCGG
1 TTATATCCGG
206810346 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:206818515 original size:68 final size:70
Alignment explanation
Indices: 206818443--206818640 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
206818433 ACACCCTGTA
* * * *
206818443 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
206818505 ATAAAT
65 ATAAAT
*
206818511 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
206818576 ATAAAT
65 ATAAAT
*
206818582 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
206818641 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:206818554 original size:41 final size:41
Alignment explanation
Indices: 206818509--206818626 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
206818499 TGAAAGATAA
206818509 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
206818550 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
206818580 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
206818621 ATGTAG
1 ATGTAG
206818627 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:206818566 original size:71 final size:71
Alignment explanation
Indices: 206818477--206818640 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
206818467 GAGATGTATC
206818477 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
206818542 AGGACA
66 AGGACA
206818548 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
206818613 AGGACA
66 AGGACA
206818619 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
206818641 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:206826080 original size:68 final size:70
Alignment explanation
Indices: 206826008--206826205 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
206825998 ACACCCTGTA
* * * *
206826008 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
206826070 ATAAAT
65 ATAAAT
*
206826076 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
206826141 ATAAAT
65 ATAAAT
*
206826147 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
206826206 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:206826119 original size:41 final size:41
Alignment explanation
Indices: 206826074--206826191 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
206826064 TGAAAGATAA
206826074 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
206826115 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
206826145 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
206826186 ATGTAG
1 ATGTAG
206826192 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:206826131 original size:71 final size:71
Alignment explanation
Indices: 206826042--206826205 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
206826032 GAGATGTATC
206826042 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
206826107 AGGACA
66 AGGACA
206826113 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
206826178 AGGACA
66 AGGACA
206826184 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
206826206 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:206827597 original size:27 final size:27
Alignment explanation
Indices: 206827567--206827755 Score: 290
Period size: 27 Copynumber: 7.0 Consensus size: 27
206827557 AGGGCAAAAT
* * * *
206827567 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
206827594 GGTAATTCTACCCTATAGGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
206827621 GGTATTTCTA-CCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
206827647 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
206827674 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
206827701 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
206827728 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
206827755 G
1 G
206827756 ATGTTTTACA
Statistics
Matches: 147, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 22 0.15
27 125 0.85
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:206827694 original size:80 final size:81
Alignment explanation
Indices: 206827567--206827754 Score: 288
Period size: 80 Copynumber: 2.3 Consensus size: 81
206827557 AGGGCAAAAT
* * * * * * *
206827567 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTACGGTATTTCTA-
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTACGGTAATTCTAC
206827631 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
*
206827647 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTACGGTAATTCTAC
*
206827712 CCTACAGGGGTATTTC
66 CCTACAAGGGTATTTC
206827728 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
206827755 GATGTTTTAC
Statistics
Matches: 98, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 56 0.57
81 42 0.43
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.34
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTACGGTAATTCTAC
CCTACAAGGGTATTTC
Found at i:206827841 original size:54 final size:54
Alignment explanation
Indices: 206827777--206827923 Score: 163
Period size: 54 Copynumber: 2.7 Consensus size: 54
206827767 ATCGAGACTT
* * * *
206827777 TTTTGATAATTTCACAGA-TCAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTA
1 TTTTGGTAATTTCACAAACT-AAGGGTATTTTGGTAATTTTACAAACCAAGGGTA
* * *
206827831 TTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTAGGGGTA
1 TTTTGGTAATTTCACAAACTAAGGGTATTTTGGTAATTTTACAAACCAAGGGTA
*** * *
206827885 -TTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 TTTTGGTAATTTCACAAACTAAGGGTATTTTGGTAATTTT
206827924 GTAAATCGAG
Statistics
Matches: 81, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 35 0.43
54 45 0.56
55 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
TTTTGGTAATTTCACAAACTAAGGGTATTTTGGTAATTTTACAAACCAAGGGTA
Found at i:206827912 original size:53 final size:54
Alignment explanation
Indices: 206827799--206827923 Score: 180
Period size: 53 Copynumber: 2.3 Consensus size: 54
206827789 CACAGATCAG
* *
206827799 GGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAA
* * **
206827853 GGGTATTTTGGTAATTTTACAAACTAGGGGTA-TTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAA
*
206827906 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
206827924 GTAAATCGAG
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
53 35 0.55
54 29 0.45
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAA
Found at i:206827928 original size:27 final size:27
Alignment explanation
Indices: 206827799--206827923 Score: 180
Period size: 27 Copynumber: 4.7 Consensus size: 27
206827789 CACAGATCAG
*
206827799 GGGTATTTTGGTAATTTTACAAGCCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
206827826 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
206827853 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
**
206827880 GGGTA-TTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
206827906 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
206827924 GTAAATCGAG
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
26 22 0.25
27 67 0.75
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:206827935 original size:27 final size:27
Alignment explanation
Indices: 206827799--206828162 Score: 173
Period size: 27 Copynumber: 13.6 Consensus size: 27
206827789 CACAGATCAG
* ** *
206827799 GGGTATTTTGGTAATTTTACAAGCCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *
206827826 GGGTATTTTGGTAATTTTACAAA-CTAA
1 GGGTATTTTGGTAATTTTATAAATC-GA
* *
206827853 GGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
206827879 GGGGTA-TTTGGTAATTTTGTAAACCAA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* *
206827906 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** *
206827933 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
206827960 GGGTA-AACGATAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * * *
206827986 GGGTA-AACGATAATTCTATAAATTGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
206828012 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
***** * *
206828039 GGGTAAAACAGTAATTTTGTAAATTGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** *
206828066 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *** *
206828093 AGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
206828120 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*
206828147 GGGCATTTCT-GTAATT
1 GGGTATTT-TGGTAATT
206828163 GGTAAACTAA
Statistics
Matches: 287, Mismatches: 44, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
26 68 0.24
27 218 0.76
28 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:206827937 original size:53 final size:53
Alignment explanation
Indices: 206827799--206827937 Score: 154
Period size: 53 Copynumber: 2.6 Consensus size: 53
206827789 CACAGATCAG
* * * *
206827799 GGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTAGTAATTTTACAA-ACGAGGGTATTTTGGTAATTTTACAAACCAA
* * **
206827853 GGGTATTTTGGTAATTTTACAAACTAGGGGTA-TTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACGA-GGGTATTTTGGTAATTTTACAAACCAA
**
206827906 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTAGTAATTTTACAAA-CGAGGGTA
206827938 AAACGGTAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
53 45 0.61
54 29 0.39
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (53 bp):
GGGTATTTTAGTAATTTTACAAACGAGGGTATTTTGGTAATTTTACAAACCAA
Found at i:206827946 original size:80 final size:81
Alignment explanation
Indices: 206827797--206827948 Score: 182
Period size: 80 Copynumber: 1.9 Consensus size: 81
206827787 TTCACAGATC
* * ****
206827797 AGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAAGGGTAAAAC
206827862 GGTAATTTTACAAACT
66 GGTAATTTTACAAACT
** ** *
206827878 AGGGGTA-TTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAA-TCGAGGGTAAAA
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACT-AAGGGTAAAA
206827941 CGGTAATT
65 CGGTAATT
206827949 CTATAAATCG
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
79 1 0.02
80 51 0.86
81 7 0.12
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.38
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACTAAGGGTAAAAC
GGTAATTTTACAAACT
Found at i:206828072 original size:54 final size:54
Alignment explanation
Indices: 206827916--206828124 Score: 278
Period size: 54 Copynumber: 3.9 Consensus size: 54
206827906 GGGTATTTTA
* *
206827916 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGT-AAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * * * * *
206827969 ATAATTTTGTAAATCGAGGGT-AAACGATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* * * *
206828022 GTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
* *
206828076 GTAATTCTATAAATCGAAGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
206828125 CTTTGGTAAT
Statistics
Matches: 136, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
52 24 0.18
53 42 0.31
54 70 0.51
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:206828149 original size:81 final size:79
Alignment explanation
Indices: 206827916--206828124 Score: 319
Period size: 81 Copynumber: 2.6 Consensus size: 79
206827906 GGGTATTTTA
* * * *
206827916 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAACGATAATTTTGTAA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAACGGTAATTTTGTAA
206827981 ATCGAGGGTAAACG
66 ATCGAGGGTAAACG
* * *
206827995 ATAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGT-AAACGGTAATTTTGTA
*
206828060 AATTGAGGGTAAAACG
65 AATCGAGGGT-AAACG
*
206828076 GTAATTCTATAAATCGAAGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
206828125 CTTTGGTAAT
Statistics
Matches: 117, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
79 43 0.37
80 24 0.21
81 50 0.43
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (79 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAACGGTAATTTTGTAA
ATCGAGGGTAAACG
Found at i:206831389 original size:40 final size:40
Alignment explanation
Indices: 206831344--206831510 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
206831334 CGGAATATAA
206831344 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
206831384 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
206831424 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
206831464 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
206831503 CCGGATAT
1 CCGGATAT
206831511 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:206831494 original size:80 final size:79
Alignment explanation
Indices: 206831360--206831510 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
206831350 ATAATCACGT
*
206831360 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
206831425 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
206831440 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
206831503 CCGGATAT
64 CCGGATAT
206831511 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:206838009 original size:27 final size:27
Alignment explanation
Indices: 206837979--206838168 Score: 299
Period size: 27 Copynumber: 7.0 Consensus size: 27
206837969 AAGGCAAAAT
* * * *
206837979 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
206838006 GGTAATTCTACCCTATAGGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
206838033 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
206838060 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
206838087 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
206838114 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
206838141 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
206838168 G
1 G
206838169 ATGTTTTACA
Statistics
Matches: 149, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:206838254 original size:54 final size:54
Alignment explanation
Indices: 206838189--206838335 Score: 172
Period size: 54 Copynumber: 2.7 Consensus size: 54
206838179 AATCGAGACT
* * * *
206838189 TTTTGATAATTTCACAGA-TCAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTA
1 TTTTGGTAATTTCACAAACT-AAGGGTATTTTGGTAATTTTACAAACCAAGGGTA
* * *
206838243 TTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTAGGGGTA
1 TTTTGGTAATTTCACAAACTAAGGGTATTTTGGTAATTTTACAAACCAAGGGTA
** * *
206838297 TTTTGGTAATTT-GTAAACCAAGGGTATTTTAGTAATTTT
1 TTTTGGTAATTTCACAAACTAAGGGTATTTTGGTAATTTT
206838336 GTAAATCGAG
Statistics
Matches: 81, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 23 0.28
54 57 0.70
55 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
TTTTGGTAATTTCACAAACTAAGGGTATTTTGGTAATTTTACAAACCAAGGGTA
Found at i:206838340 original size:27 final size:27
Alignment explanation
Indices: 206838211--206838335 Score: 182
Period size: 27 Copynumber: 4.7 Consensus size: 27
206838201 CACAGATCAG
*
206838211 GGGTATTTTGGTAATTTTACAAGCCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
206838238 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
206838265 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
206838292 GGGTATTTTGGTAATTTGT--AAACCAA
1 GGGTATTTTGGTAATTT-TACAAACCAA
*
206838318 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
206838336 GTAAATCGAG
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
25 1 0.01
26 21 0.23
27 68 0.75
28 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:206838349 original size:53 final size:52
Alignment explanation
Indices: 206838211--206838349 Score: 154
Period size: 54 Copynumber: 2.6 Consensus size: 52
206838201 CACAGATCAG
* * * *
206838211 GGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTAGTAATTTTACAA-ACGAGGGTATTTTGGTAATTTTA-AAACCAA
* *
206838265 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTGT-AAACCAA
1 GGGTATTTTAGTAATTTTACAAACGA-GGGTATTTTGGTAATTT-TAAAACCAA
**
206838318 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTAGTAATTTTACAAA-CGAGGGTA
206838350 AAACGGTAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
53 33 0.44
54 41 0.55
55 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (52 bp):
GGGTATTTTAGTAATTTTACAAACGAGGGTATTTTGGTAATTTTAAAACCAA
Found at i:206838358 original size:27 final size:27
Alignment explanation
Indices: 206838328--206838538 Score: 296
Period size: 27 Copynumber: 7.8 Consensus size: 27
206838318 GGGTATTTTA
* *
206838328 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
206838355 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
206838382 ATAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
206838409 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
206838436 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
206838463 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
206838490 GTAATTCTATAAATCGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
206838517 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
206838539 CTTTGGTAAT
Statistics
Matches: 161, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:206838422 original size:81 final size:81
Alignment explanation
Indices: 206838337--206838538 Score: 343
Period size: 81 Copynumber: 2.5 Consensus size: 81
206838327 AGTAATTTTG
*
206838337 TAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC-GATAATTTTGTAAATCGAGG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAG-TAATTTTGTAAATCGAGG
206838401 GTAAAACGATAATTCTA
65 GTAAAACGATAATTCTA
* *
206838418 TAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATTGAGGG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGG
*
206838483 TAAAACGGTAATTCTA
66 TAAAACGATAATTCTA
*
206838499 TAAATCGAAGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
206838539 CTTTGGTAAT
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
81 113 0.99
82 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.29
Consensus pattern (81 bp):
TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGG
TAAAACGATAATTCTA
Found at i:206838545 original size:27 final size:27
Alignment explanation
Indices: 206838328--206838563 Score: 256
Period size: 27 Copynumber: 8.7 Consensus size: 27
206838318 GGGTATTTTA
* *
206838328 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
206838355 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
206838382 ATAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
206838409 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* **
206838436 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
206838463 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
206838490 GTAATTCTATAAATCGAAGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* ***
206838517 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
206838544 GTAATTTTACAAGTCGAGGG
1 GTAATTTTATAAATCGAGGG
206838564 CATTTCTGTA
Statistics
Matches: 180, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 180 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAATG
Found at i:206841807 original size:40 final size:40
Alignment explanation
Indices: 206841762--206841928 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
206841752 CGGAATATAA
*
206841762 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
206841802 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
206841842 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
206841882 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
206841921 CCGGATAT
1 CCGGATAT
206841929 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:206844822 original size:29 final size:29
Alignment explanation
Indices: 206844790--206844918 Score: 222
Period size: 29 Copynumber: 4.4 Consensus size: 29
206844780 ATAGTGAATC
206844790 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
206844819 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
* *
206844849 CACACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
206844878 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
206844907 CGCACACTTAGT
1 CGCACACTTAGT
206844919 TCTGTACAAT
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
29 68 0.71
30 28 0.29
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:206844931 original size:59 final size:59
Alignment explanation
Indices: 206844790--206844918 Score: 224
Period size: 59 Copynumber: 2.2 Consensus size: 59
206844780 ATAGTGAATC
206844790 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* * *
206844849 CACACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
206844907 CGCACACTTAGT
1 CGCACACTTAGT
206844919 TCTGTACAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
58 20 0.30
59 46 0.70
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:206846250 original size:19 final size:18
Alignment explanation
Indices: 206846226--206846261 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
206846216 CCCCCTTTTT
*
206846226 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
206846245 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
206846262 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:206854269 original size:40 final size:40
Alignment explanation
Indices: 206854208--206854340 Score: 171
Period size: 40 Copynumber: 3.4 Consensus size: 40
206854198 CCTGCGAAAC
* *
206854208 TTTAAGCCCGGATAT--AGTACCAGCACTAAGCCTGTGGGA
1 TTTAA-CCCGGATATACATTACCAGCACAAAGCCTGTGGGA
* * **
206854247 TTTAACCCGGATATACATTACCAGCACGAAGCTTGCAGGA
1 TTTAACCCGGATATACATTACCAGCACAAAGCCTGTGGGA
*
206854287 TTTAACTCGGATATACATTACCAGCACAAAGCCTGTGGGA
1 TTTAACCCGGATATACATTACCAGCACAAAGCCTGTGGGA
*
206854327 TTTAACCCAGATAT
1 TTTAACCCGGATAT
206854341 TTAATATATC
Statistics
Matches: 80, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
38 9 0.11
39 5 0.06
40 66 0.82
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (40 bp):
TTTAACCCGGATATACATTACCAGCACAAAGCCTGTGGGA
Found at i:206856527 original size:24 final size:24
Alignment explanation
Indices: 206856473--206856661 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
206856463 GCTTTATCAT
*
206856473 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
206856498 ACAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
206856522 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
206856545 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
206856569 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
206856592 ATAACTGGGGCATAGGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
206856616 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
206856639 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
206856662 GCACTTCCTC
Statistics
Matches: 147, Mismatches: 13, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
23 65 0.44
24 71 0.48
25 11 0.07
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:206856548 original size:23 final size:23
Alignment explanation
Indices: 206856494--206856660 Score: 253
Period size: 23 Copynumber: 7.1 Consensus size: 23
206856484 CCTAGCCTCT
* *
206856494 TTTAACAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
206856517 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
206856541 TTTAATAATTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
206856564 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
206856588 TTTAATAACTGGGGCATAGGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
206856611 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
206856635 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
206856658 TTT
1 TTT
206856661 TGCACTTCCT
Statistics
Matches: 131, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
23 68 0.52
24 63 0.48
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:206856554 original size:47 final size:47
Alignment explanation
Indices: 206856494--206856662 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
206856484 CCTAGCCTCT
* * *
206856494 TTTAACAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
206856541 TTTAATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
206856588 TTTAATAACTGGGGCATAGGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
206856635 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
206856663 CACTTCCTCC
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 115 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:206856733 original size:9 final size:9
Alignment explanation
Indices: 206856719--206856775 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
206856709 ATCTCATGTG
206856719 CATATCATA
1 CATATCATA
*
206856728 CATATCATGTG
1 CATATCA--TA
206856739 CATATCATA
1 CATATCATA
*
206856748 CATATCATGTG
1 CATATCA--TA
206856759 CATATCATA
1 CATATCATA
206856768 CATATCAT
1 CATATCAT
206856776 GTTTATCAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:206856735 original size:20 final size:20
Alignment explanation
Indices: 206856707--206856777 Score: 133
Period size: 20 Copynumber: 3.5 Consensus size: 20
206856697 GCATTTATGA
*
206856707 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
206856727 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
206856747 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
206856767 ACATATCATGT
1 ACATATCATGT
206856778 TTATCAAAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:206856742 original size:11 final size:11
Alignment explanation
Indices: 206856712--206856766 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
206856702 TATGAACATC
206856712 TCATGTGCATA
1 TCATGTGCATA
*
206856723 TCA--TACATA
1 TCATGTGCATA
206856732 TCATGTGCATA
1 TCATGTGCATA
*
206856743 TCA--TACATA
1 TCATGTGCATA
206856752 TCATGTGCATA
1 TCATGTGCATA
206856763 TCAT
1 TCAT
206856767 ACATATCATG
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:206856842 original size:25 final size:25
Alignment explanation
Indices: 206856814--206856861 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
206856804 ATATATAAAC
* * *
206856814 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
206856839 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
206856862 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:206864677 original size:22 final size:23
Alignment explanation
Indices: 206864635--206864796 Score: 267
Period size: 22 Copynumber: 7.1 Consensus size: 23
206864625 CCTAGCCTCT
*
206864635 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
206864658 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
206864680 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
206864702 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
206864725 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
206864748 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
206864772 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
206864794 TTT
1 TTT
206864797 TGCACTTCCT
Statistics
Matches: 132, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
22 57 0.43
23 53 0.40
24 22 0.17
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:206864867 original size:9 final size:9
Alignment explanation
Indices: 206864853--206864909 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
206864843 ATCTCATGTG
206864853 CATATCATA
1 CATATCATA
*
206864862 CATATCATGTG
1 CATATCA--TA
206864873 CATATCATA
1 CATATCATA
* *
206864882 CATGTCATGTG
1 CATATCA--TA
206864893 CATATCATA
1 CATATCATA
206864902 CATATCAT
1 CATATCAT
206864910 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:206864869 original size:20 final size:20
Alignment explanation
Indices: 206864841--206864911 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
206864831 GCATTTATGA
*
206864841 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
206864861 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
206864881 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
206864901 ACATATCATGT
1 ACATATCATGT
206864912 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:206864876 original size:11 final size:11
Alignment explanation
Indices: 206864846--206864900 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
206864836 TATGAACATC
206864846 TCATGTGCATA
1 TCATGTGCATA
*
206864857 TCA--TACATA
1 TCATGTGCATA
206864866 TCATGTGCATA
1 TCATGTGCATA
* *
206864877 TCA--TACATG
1 TCATGTGCATA
206864886 TCATGTGCATA
1 TCATGTGCATA
206864897 TCAT
1 TCAT
206864901 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:206864976 original size:25 final size:25
Alignment explanation
Indices: 206864948--206864995 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
206864938 ATATATAAAC
* * *
206864948 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
206864973 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
206864996 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:206868799 original size:40 final size:40
Alignment explanation
Indices: 206868716--206868868 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
206868706 TCGAATGATG
* *
206868716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
206868756 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
206868796 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
206868837 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
206868869 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:206876807 original size:39 final size:40
Alignment explanation
Indices: 206876711--206876862 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
206876701 TCGAATGATG
* *
206876711 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* *
206876751 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGT-TCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
206876790 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
206876831 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
206876863 CGCTATATCC
Statistics
Matches: 94, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 33 0.35
40 50 0.53
41 10 0.11
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:206879071 original size:40 final size:40
Alignment explanation
Indices: 206879026--206879192 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
206879016 CGGAATATAA
*
206879026 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
206879066 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
206879106 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
206879146 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
206879185 CCGGATAT
1 CCGGATAT
206879193 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:206879176 original size:80 final size:79
Alignment explanation
Indices: 206879042--206879192 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
206879032 ATAACCATGT
*
206879042 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
206879107 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
206879122 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
206879185 CCGGATAT
64 CCGGATAT
206879193 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:206886992 original size:40 final size:40
Alignment explanation
Indices: 206886947--206887113 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
206886937 CGGAATATAA
*
206886947 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
206886987 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
206887027 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
206887067 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
206887106 CCGGATAT
1 CCGGATAT
206887114 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:206887097 original size:80 final size:79
Alignment explanation
Indices: 206886963--206887113 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
206886953 ATAACCATGT
*
206886963 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
206887028 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
206887043 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
206887106 CCGGATAT
64 CCGGATAT
206887114 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:206888743 original size:30 final size:29
Alignment explanation
Indices: 206888649--206888750 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
206888639 TATAGTGAAT
* * *
206888649 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
206888678 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
206888706 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
206888736 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
206888751 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:206893803 original size:28 final size:30
Alignment explanation
Indices: 206893763--206893829 Score: 111
Period size: 29 Copynumber: 2.3 Consensus size: 30
206893753 GCCTCAAGTA
206893763 GCCGAAGCTAG-TTAAATCGCACACTT-GT
1 GCCGAAGCTAGTTTAAATCGCACACTTAGT
206893791 GCCGAAGCTAGTTTAAATCGCACACTTAGT
1 GCCGAAGCTAGTTTAAATCGCACACTTAGT
*
206893821 GCCAAAGCT
1 GCCGAAGCT
206893830 TCTGATTCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
28 11 0.31
29 15 0.42
30 10 0.28
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (30 bp):
GCCGAAGCTAGTTTAAATCGCACACTTAGT
Found at i:206896962 original size:20 final size:20
Alignment explanation
Indices: 206896937--206896983 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
206896927 ATTTTGATAA
206896937 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
206896957 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
206896977 ACATGAT
1 ACATGAT
206896984 GTGTTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:206897059 original size:24 final size:24
Alignment explanation
Indices: 206897032--206897151 Score: 149
Period size: 24 Copynumber: 5.0 Consensus size: 24
206897022 GGAGGAAGTG
206897032 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
206897056 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
206897080 -TAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
*
206897104 AAAAAGGGCTT-TGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
206897126 CTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAG-GGCTTATGCC-CCAGTTAT
206897152 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
23 27 0.32
24 42 0.49
25 16 0.19
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:206897119 original size:47 final size:47
Alignment explanation
Indices: 206897034--206897152 Score: 161
Period size: 47 Copynumber: 2.5 Consensus size: 47
206897024 AGGAAGTGCA
* *
206897034 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTACT
206897081 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTACT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAAGGGCTTATGCCCCAGTTACT
*
206897128 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
206897153 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
47 33 0.51
48 22 0.34
49 10 0.15
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTACT
Found at i:206897342 original size:31 final size:31
Alignment explanation
Indices: 206897304--206897367 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
206897294 CGTTTACAGT
206897304 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* ** *
206897335 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
206897366 AA
1 AA
206897368 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:206904882 original size:25 final size:25
Alignment explanation
Indices: 206904853--206904900 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
206904843 TTATAATATG
* *
206904853 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
206904878 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
206904901 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:206905037 original size:24 final size:24
Alignment explanation
Indices: 206905010--206905129 Score: 156
Period size: 24 Copynumber: 5.0 Consensus size: 24
206905000 TGGAGAAGTG
206905010 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
206905034 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
206905058 -TAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
*
206905082 AAAAAGGGCTT-TGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
206905105 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
206905130 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
23 28 0.32
24 42 0.48
25 17 0.20
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:206905097 original size:47 final size:47
Alignment explanation
Indices: 206905012--206905130 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 47
206905002 GAGAAGTGCA
*
206905012 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
206905059 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAAGGGCTTATGCCCCAGTTATT
*
206905106 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
206905131 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
47 34 0.52
48 22 0.33
49 10 0.15
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
Found at i:206905357 original size:31 final size:31
Alignment explanation
Indices: 206905322--206905385 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
206905312 CGTTTACAGT
206905322 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
206905353 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
206905384 AA
1 AA
206905386 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:206910329 original size:28 final size:27
Alignment explanation
Indices: 206910289--206910359 Score: 97
Period size: 28 Copynumber: 2.6 Consensus size: 27
206910279 AAATTTGTAC
* *
206910289 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-CTGAATATAT
206910317 AGCACTAAGTGTGGCGAGCTGAATATAT
1 AGCACTAAGTGT-GCGAGCTGAATATAT
*
206910345 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
206910360 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 3 0.08
28 31 0.79
29 5 0.13
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTGAATATAT
Found at i:206918196 original size:27 final size:28
Alignment explanation
Indices: 206918135--206918204 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
206918125 AAATTTGTAC
* *
206918135 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
206918163 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
206918190 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
206918205 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:206918243 original size:55 final size:55
Alignment explanation
Indices: 206918136--206918244 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
206918126 AATTTGTACA
* * * * *
206918136 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAATATATG
1 GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
* * *
206918191 GCACTAAGTGTGCGTGATCGAGTAT-TAAGCACTATGTGTGCGAACTCTATATAT
1 GCACTAAGTGTGCGAGATCGAGTATAT-AGCACTAAGTGTGCGAACTCAATATAT
206918245 ATATTTCCGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
Found at i:206920879 original size:39 final size:40
Alignment explanation
Indices: 206920780--206920929 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 40
206920770 CGAATGATGT
* * * * * *
206920780 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTAATAAAC
* * * *
206920820 CCGGACTAGGAT-CCGAAGGCATTCGTACGAGTTAATAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTAATAAAC
* * *
206920860 CCGGGCTAAG-CCCTAAGGCATT-GTGCAAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTAATAAAC
*
206920898 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
206920930 CGCTATAACC
Statistics
Matches: 87, Mismatches: 18, Indels: 10
0.76 0.16 0.09
Matches are distributed among these distances:
38 21 0.24
39 21 0.24
40 39 0.45
41 6 0.07
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTAATAAAC
Found at i:206920920 original size:78 final size:80
Alignment explanation
Indices: 206920779--206920929 Score: 191
Period size: 78 Copynumber: 1.9 Consensus size: 80
206920769 TCGAATGATG
* * * *
206920779 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
206920844 GTACGAGTTAATAAA
66 GTACGAGTTAATAAA
* * **
206920859 TCCGGGCTAAG-CCCTAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
206920921 CGTGCGAGT
65 CGTACGAGT
206920930 CGCTATAACC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.57
79 14 0.23
80 11 0.18
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTACGAGTTAATAAA
Found at i:206923287 original size:40 final size:40
Alignment explanation
Indices: 206923137--206923330 Score: 205
Period size: 40 Copynumber: 4.8 Consensus size: 40
206923127 TTTGAATGAT
* * * * * *
206923137 ATCCGGGCTAAGTCCTGAAGGCTTTTGCGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
206923178 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
206923218 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
206923257 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * * * *
206923298 A-CTGGGATATGTCCCAAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
206923331 AGCTATATCC
Statistics
Matches: 131, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 35 0.27
40 69 0.53
41 26 0.20
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:206923345 original size:79 final size:77
Alignment explanation
Indices: 206923173--206923356 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 77
206923163 GCGCTAAGTG
* * * *
206923173 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGATAAGCCCAAAGG
*
206923238 CATTGGTGCGAGTT
64 CATTGGAGCGAGTT
* * *
206923252 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGATATGTCCCAAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGATAAG-CCCAAA
*
206923316 GGCATTTGAGCGAG-T
62 GGCATTGGAGCGAGTT
*
206923331 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
206923357 TATGTGATTC
Statistics
Matches: 88, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 29 0.33
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGATAAGCCCAAAGGCA
TTGGAGCGAGTT
Found at i:206925601 original size:25 final size:25
Alignment explanation
Indices: 206925571--206925664 Score: 98
Period size: 25 Copynumber: 3.8 Consensus size: 25
206925561 CGGATACTCC
*
206925571 ACAGCTCATGTGAGCATACCAATTT
1 ACAGCTCATGTGAGCATACCGATTT
* ** * * *
206925596 ATAGCTTGTGAGAGCATAACGATCT
1 ACAGCTCATGTGAGCATACCGATTT
* *
206925621 ACAGCTCAAGTGAGCATACCGATTC
1 ACAGCTCATGTGAGCATACCGATTT
*
206925646 ACAGCTCATATGAGCATAC
1 ACAGCTCATGTGAGCATAC
206925665 ATGTACATGA
Statistics
Matches: 52, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.24
Consensus pattern (25 bp):
ACAGCTCATGTGAGCATACCGATTT
Found at i:206930948 original size:46 final size:46
Alignment explanation
Indices: 206930898--206931072 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
206930888 TGGTTGAGCA
206930898 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
206930944 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
206930989 CATCCGAACTCGTTGAGTTGA-TCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
206931036 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
206931073 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 20 0.18
46 54 0.50
47 22 0.20
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:206931053 original size:92 final size:93
Alignment explanation
Indices: 206930895--206931065 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
206930885 GGATGGTTGA
* *
206930895 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
206930960 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
206930988 GCATCCGAACTCGTTGAGTTGA-TCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
206931052 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
206931066 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 53 0.71
93 22 0.29
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:206938488 original size:46 final size:46
Alignment explanation
Indices: 206938438--206938613 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
206938428 TGGTTGAGCA
206938438 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
206938484 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
206938529 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
206938577 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
206938614 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:206938594 original size:93 final size:93
Alignment explanation
Indices: 206938435--206938606 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
206938425 GGATGGTTGA
* *
206938435 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
206938500 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
206938528 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
206938593 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
206938607 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:206947262 original size:40 final size:40
Alignment explanation
Indices: 206947177--206947327 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
206947167 AATTGAATGA
* * *
206947177 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
206947217 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
206947258 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
206947297 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
206947328 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:206947341 original size:40 final size:40
Alignment explanation
Indices: 206947214--206947343 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
206947204 ATGCTGGAAA
* * * *
206947214 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
206947254 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
206947294 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
206947334 TTATATCCGG
1 TTATATCCGG
206947344 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:206948792 original size:42 final size:42
Alignment explanation
Indices: 206948705--206948826 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
206948695 GGGGTGTTAC
* * * * **
206948705 ATCTCATATCGATACCAATAGCCCAGCTATGGACTTACATGAA
1 ATCTCATATCGATGCC-ATATCCCAGATATGGTCTTACACAAA
* *
206948748 ATCTCATATCGATGCCATATCGCATATATGGTCTTACACAAA
1 ATCTCATATCGATGCCATATCCCAGATATGGTCTTACACAAA
**
206948790 ATCTCATAAT-GATGCCATAT-TTAGATATGGTCTTACA
1 ATCTCAT-ATCGATGCCATATCCCAGATATGGTCTTACA
206948827 AATAGTCTCG
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
41 14 0.21
42 36 0.54
43 17 0.25
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (42 bp):
ATCTCATATCGATGCCATATCCCAGATATGGTCTTACACAAA
Found at i:206952173 original size:27 final size:26
Alignment explanation
Indices: 206952125--206952184 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
206952115 GCGAGGCTGC
*
206952125 CAGATATTGTGACGAAGTCACCAAATA
1 CAGATATTGTGACGAAGCCACCAAA-A
* * * *
206952152 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAAAA
206952178 CAGATAT
1 CAGATAT
206952185 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAAAA
Found at i:206952275 original size:27 final size:26
Alignment explanation
Indices: 206952227--206952278 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
206952217 GCGAGGCTGC
*
206952227 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
206952253 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
206952279 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:206954785 original size:40 final size:42
Alignment explanation
Indices: 206954729--206954868 Score: 157
Period size: 40 Copynumber: 3.5 Consensus size: 42
206954719 GACTATGTTT
206954729 GGCACTTAATGTGCGA-ATCAG-AATAGCTTCGGCTATATAA
1 GGCACTTAATGTGCGAGATCAGAAATAGCTTCGGCTATATAA
* * * *
206954769 AGCACTTAGTGTGCGA-ATC-GAAATAGCTTAGGCTATATAT
1 GGCACTTAATGTGCGAGATCAGAAATAGCTTCGGCTATATAA
* * *
206954809 GGCCCTTAATGTGCGAGAT-TGAAATAGCTTCGACTATGA-AA
1 GGCACTTAATGTGCGAGATCAGAAATAGCTTCGGCTAT-ATAA
*
206954850 GGCACTTAGTGTGCGAGAT
1 GGCACTTAATGTGCGAGAT
206954869 TATAATAGCT
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 47 0.56
41 35 0.42
42 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
GGCACTTAATGTGCGAGATCAGAAATAGCTTCGGCTATATAA
Found at i:206959937 original size:46 final size:46
Alignment explanation
Indices: 206959755--206959966 Score: 173
Period size: 46 Copynumber: 4.5 Consensus size: 46
206959745 ATTCATGTGT
* * * *
206959755 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGA-GACGA
* * * * *
206959801 GAGCCAATGTAAGACCATGTCTAGGACATGGTATTGAC-ATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTA-CGAGACGA
* * *
206959849 -AGGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGACGCA
1 GA-GCCAGTGTAAGACATGTCTGGGACATGCATC-GACTACGAGACG-A
*
206959896 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGACGA
* **
206959941 TAATCAGTGTAAGACTATGTCTGGGA
1 GAGCCAGTGTAAGAC-ATGTCTGGGA
206959967 AATGGCATTG
Statistics
Matches: 133, Mismatches: 22, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
45 4 0.03
46 68 0.51
47 41 0.31
48 19 0.14
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGACGA
Found at i:206964501 original size:22 final size:21
Alignment explanation
Indices: 206964459--206964500 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
206964449 AAGAAGAACA
206964459 AAAACATAACCAAAATTTTTT
1 AAAACATAACCAAAATTTTTT
206964480 AAAACATAACCAAAATTTTTT
1 AAAACATAACCAAAATTTTTT
206964501 TCTTTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAACATAACCAAAATTTTTT
Found at i:206968103 original size:26 final size:26
Alignment explanation
Indices: 206968074--206968141 Score: 120
Period size: 26 Copynumber: 2.6 Consensus size: 26
206968064 TGATTGTGAT
206968074 ATGGGCTCAA-GCCCAACTGAGGCTAC
1 ATGGGCT-AAGGCCCAACTGAGGCTAC
206968100 ATGGGCTAAGGCCCAACTGAGGCTAC
1 ATGGGCTAAGGCCCAACTGAGGCTAC
206968126 ATGGGCTAAGGCCCAA
1 ATGGGCTAAGGCCCAA
206968142 GTGCCACCGT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 2 0.05
26 39 0.95
ACGTcount: A:0.28, C:0.28, G:0.29, T:0.15
Consensus pattern (26 bp):
ATGGGCTAAGGCCCAACTGAGGCTAC
Found at i:206969755 original size:40 final size:40
Alignment explanation
Indices: 206969602--206969753 Score: 218
Period size: 40 Copynumber: 3.8 Consensus size: 40
206969592 TGGAATTTAA
* *
206969602 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
206969642 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
206969682 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
206969722 CCGGATATAGTAACTCGCACAAATGCCTTCGG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGG
206969754 ATATAGTCAC
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 4 0.04
40 95 0.95
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:206969778 original size:29 final size:28
Alignment explanation
Indices: 206969723--206969782 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
206969713 GATCTTAGTC
* *
206969723 CGGATATAGTAACTCGCACAAATGCCTT
1 CGGATATAGTAACTAGCACAAAAGCCTT
*
206969751 CGGATATAGTCACTTAGCACAAAAGCCTT
1 CGGATATAGTAAC-TAGCACAAAAGCCTT
206969780 CGG
1 CGG
206969783 GACATAGCCC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 12 0.43
29 16 0.57
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (28 bp):
CGGATATAGTAACTAGCACAAAAGCCTT
Found at i:206971766 original size:39 final size:40
Alignment explanation
Indices: 206971660--206971844 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
206971650 GCTACTCGTT
*
206971660 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
206971700 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
206971740 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
206971779 CAAATGCCTTC-GGATCTTAGTCCGGATATAATCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
206971820 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
206971845 CATCATTCGA
Statistics
Matches: 132, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 42 0.32
40 77 0.58
41 13 0.10
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:206971772 original size:79 final size:82
Alignment explanation
Indices: 206971660--206971844 Score: 247
Period size: 79 Copynumber: 2.3 Consensus size: 82
206971650 GCTACTCGTT
*
206971660 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
206971723 GGATTTAGTAAC-TCGCA
65 GGATATAATAACTTAGCA
* **
206971740 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
206971803 GATATAATCACTTAGCA
66 GATATAATAACTTAGCA
206971820 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
206971845 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAATAACTTAGCA
Found at i:206974199 original size:19 final size:19
Alignment explanation
Indices: 206974151--206974191 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
206974141 TGATGCTGCC
206974151 TTCAGACTTTCACGAATTA
1 TTCAGACTTTCACGAATTA
206974170 TTCAGACTTTCACGAATTA
1 TTCAGACTTTCACGAATTA
206974189 TTC
1 TTC
206974192 TTACTTTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (19 bp):
TTCAGACTTTCACGAATTA
Found at i:206979871 original size:40 final size:40
Alignment explanation
Indices: 206979834--206980019 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
206979824 GCTACTCGTT
* *
206979834 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
206979874 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
206979914 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
206979954 CAAATGCCTTC-GGATCTTAGTCCGGATATAATCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
206979995 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
206980020 CATCATTCGA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:206990975 original size:14 final size:15
Alignment explanation
Indices: 206990953--206990982 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
206990943 GAATATCAAA
206990953 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
206990968 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
206990982 A
1 A
206990983 AGTCAAATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:207004150 original size:29 final size:29
Alignment explanation
Indices: 207004081--207004211 Score: 99
Period size: 29 Copynumber: 4.7 Consensus size: 29
207004071 CCCACTGACC
* ** **
207004081 GATCTCGCACACATAGTG-CTCGGTTGGA
1 GATCTCGCACACACAGTGCCTCAATTACA
* * *
207004109 GAACTCGCACACACAGTGCCTCATTTACC
1 GATCTCGCACACACAGTGCCTCAATTACA
* * **
207004138 GATCTCGCTCACATAGTG-CTCGGTTA-A
1 GATCTCGCACACACAGTGCCTCAATTACA
* *
207004165 AAT-TCGCACACACAGTGCCTCAATTACT
1 GATCTCGCACACACAGTGCCTCAATTACA
*
207004193 GATCTCGCACACATAGTGC
1 GATCTCGCACACACAGTGC
207004212 TCGGTTAAAG
Statistics
Matches: 78, Mismatches: 21, Indels: 7
0.74 0.20 0.07
Matches are distributed among these distances:
26 12 0.15
27 8 0.10
28 24 0.31
29 34 0.44
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (29 bp):
GATCTCGCACACACAGTGCCTCAATTACA
Found at i:207004197 original size:55 final size:55
Alignment explanation
Indices: 207004078--207004220 Score: 223
Period size: 55 Copynumber: 2.6 Consensus size: 55
207004068 GTGCCCACTG
* *
207004078 ACCGATCTCGCACACATAGTGCTCGGTTGGAGAACTCGCACACACAGTGCCTCATTT
1 ACCGATCTCGCACACATAGTGCTCGGTT--AAAACTCGCACACACAGTGCCTCAATT
* *
207004135 ACCGATCTCGCTCACATAGTGCTCGGTTAAAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAACTCGCACACACAGTGCCTCAATT
*
207004190 ACTGATCTCGCACACATAGTGCTCGGTTAAA
1 ACCGATCTCGCACACATAGTGCTCGGTTAAA
207004221 GGAATTCATA
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
55 53 0.66
57 27 0.34
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (55 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAACTCGCACACACAGTGCCTCAATT
Found at i:207004325 original size:43 final size:43
Alignment explanation
Indices: 207004271--207004483 Score: 399
Period size: 43 Copynumber: 5.0 Consensus size: 43
207004261 CATCGGCATT
*
207004271 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
*
207004314 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
*
207004357 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
207004400 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
207004443 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCA
207004484 TAACTGCTCT
Statistics
Matches: 167, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 167 1.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
Found at i:207004569 original size:40 final size:42
Alignment explanation
Indices: 207004462--207004635 Score: 133
Period size: 40 Copynumber: 4.2 Consensus size: 42
207004452 AGGCACGAAG
* * * * * *
207004462 GCCCGAATACATATCACCGGCA-TAACTGCTCTTCGGGACCTG
1 GCCCGGATATATATCACCAGCACGAA-TGCTCTTCGGGACTTA
* * * * * *
207004504 GTCCGG--ATACATCACTAGCATGAATGCTCTTCGAGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
207004544 GCCCGGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
207004584 ACCTGGATATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCCCGG--ATATATATCACCAGCACGAATGCTCTTCGGGACTTA
207004628 GCCCGGAT
1 GCCCGGAT
207004636 CATCGTCGAG
Statistics
Matches: 100, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
40 54 0.54
41 3 0.03
42 12 0.12
43 1 0.01
44 30 0.30
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (42 bp):
GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:207005819 original size:2 final size:2
Alignment explanation
Indices: 207005812--207005839 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
207005802 TTGGCTGTCT
207005812 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
207005840 CCTTCGAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:207006620 original size:49 final size:49
Alignment explanation
Indices: 207006493--207006757 Score: 441
Period size: 49 Copynumber: 5.5 Consensus size: 49
207006483 CCCTTCGGGA
* *
207006493 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
207006540 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
207006587 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
207006636 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
207006685 CTTATCACATATAT-CACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
207006733 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
207006758 TGTACAGACT
Statistics
Matches: 205, Mismatches: 8, Indels: 8
0.93 0.04 0.04
Matches are distributed among these distances:
46 1 0.00
47 49 0.24
48 48 0.23
49 107 0.52
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:207006754 original size:146 final size:143
Alignment explanation
Indices: 207006493--207006757 Score: 467
Period size: 146 Copynumber: 1.8 Consensus size: 143
207006483 CCCTTCGGGA
* *
207006493 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTAAGCCTTATCACATATATACAC
1 CTTATCACATTTACACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
207006558 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
207006623 TCGGCCATTTGGC
131 TCGGCCATTTGGC
*
207006636 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATCA
1 CTTATCACAT-T-TACACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATAT-A
*
207006701 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
63 CACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
207006758 TGTACAGACT
Statistics
Matches: 115, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
143 10 0.09
144 1 0.01
145 47 0.41
146 57 0.50
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (143 bp):
CTTATCACATTTACACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTTGGC
Found at i:207010134 original size:29 final size:29
Alignment explanation
Indices: 207010096--207010198 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 29
207010086 GGTTGGAGAA
207010096 CTCGCACACACAGTGCCTCATTTACCGAT
1 CTCGCACACACAGTGCCTCATTTACCGAT
* * * * **
207010125 CTCGCTCACATAGTG-CTCGGTTAAAGGAAT
1 CTCGCACACACAGTGCCTC-ATTTACCG-AT
* *
207010155 -TCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCATTTACCGAT
*
207010183 CTCGCACACATAGTGC
1 CTCGCACACACAGTGC
207010199 TCGGTTAAAG
Statistics
Matches: 56, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
28 5 0.09
29 46 0.82
30 5 0.09
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.24
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCATTTACCGAT
Done.