Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 659 of 770
Found at i:207010186 original size:58 final size:58
Alignment explanation
Indices: 207010062--207010214 Score: 245
Period size: 58 Copynumber: 2.7 Consensus size: 58
207010052 GTGCCCACTG
** * *
207010062 ACCGATCTCGCACACATAGTGCTCGGTTGGA-GAACTCGCACACACAGTGCCTCATTT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
*
207010119 ACCGATCTCGCTCACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
*
207010177 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTC
207010215 ATACGGTAAT
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
57 28 0.32
58 60 0.68
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:207010312 original size:43 final size:43
Alignment explanation
Indices: 207010258--207010550 Score: 529
Period size: 43 Copynumber: 6.9 Consensus size: 43
207010248 CATCGGCATT
*
207010258 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
*
207010301 AAGCCTGCTAGGCTCGAAGG-CCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
*
207010343 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
207010386 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
*
207010429 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
207010472 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCAC-
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
207010514 AAGCCTGCTA-GCACGAAGGCCCGAATACATATCACCG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCG
207010551 CATAACTGCT
Statistics
Matches: 244, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
41 27 0.11
42 52 0.21
43 165 0.68
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
Found at i:207010518 original size:128 final size:128
Alignment explanation
Indices: 207010258--207010550 Score: 545
Period size: 128 Copynumber: 2.3 Consensus size: 128
207010248 CATCGGCATT
*
207010258 AAGCCTGCTAGGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCC
*
207010323 GAATACATATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA
66 GAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
207010386 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCTCGAAGG-C
207010451 CGAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCAC-
65 CGAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
207010514 AAGCCTGCTA-GCACGAAGGCCCGAATACATATCACCG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCG
207010551 CATAACTGCT
Statistics
Matches: 162, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
127 27 0.17
128 72 0.44
129 63 0.39
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (128 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCC
GAATACATATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
Found at i:207010641 original size:39 final size:41
Alignment explanation
Indices: 207010532--207010698 Score: 128
Period size: 39 Copynumber: 4.1 Consensus size: 41
207010522 TAGCACGAAG
* * * *
207010532 GCCCGAATACATATCACC-GCA-TAACTGCTCTTCGGGACCTG
1 GCCCG-ATATATATCACCAGCACGAA-TGCTCTTCGGGACTTA
* * * * * * *
207010573 GTCCG-GATACATCACTAGCATGAATGCTCTTCGAGATTTA
1 GCCCGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
207010613 GCCCGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
207010652 ACCTGGATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCC-CGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
207010694 GCCCG
1 GCCCG
207010699 GATCATCGTC
Statistics
Matches: 95, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
39 32 0.34
40 25 0.26
41 10 0.11
42 28 0.29
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (41 bp):
GCCCGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:207011884 original size:2 final size:2
Alignment explanation
Indices: 207011877--207011914 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
207011867 TTGGCTGTCT
207011877 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
207011915 CCTTCGAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:207012696 original size:49 final size:49
Alignment explanation
Indices: 207012569--207012834 Score: 441
Period size: 49 Copynumber: 5.5 Consensus size: 49
207012559 CCCTTCGGGA
* *
207012569 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
207012616 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
207012663 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
207012712 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
207012761 CTTATCACATATATACACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
207012810 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
207012835 TGTACAGACT
Statistics
Matches: 206, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 49 0.24
49 156 0.76
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:207017947 original size:40 final size:40
Alignment explanation
Indices: 207017888--207018074 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
207017878 CATTGGAATG
* * * *
207017888 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
*
207017928 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
207017968 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * *
207018008 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
207018048 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
207018075 CGAGCGAGTC
Statistics
Matches: 124, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 117 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:207023168 original size:17 final size:18
Alignment explanation
Indices: 207023136--207023169 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
207023126 CTCTCCTAAA
*
207023136 ACGATTTTGATCTTTCTC
1 ACGATTCTGATCTTTCTC
207023154 ACGATTCTG-TCTTTCT
1 ACGATTCTGATCTTTCT
207023170 ATATGCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.15, C:0.24, G:0.12, T:0.50
Consensus pattern (18 bp):
ACGATTCTGATCTTTCTC
Found at i:207027065 original size:46 final size:48
Alignment explanation
Indices: 207026943--207027072 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 48
207026933 TGTAACCCGC
207026943 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * *
207026993 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
207027036 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
207027073 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.41
47 29 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:207027091 original size:46 final size:44
Alignment explanation
Indices: 207026948--207027091 Score: 141
Period size: 46 Copynumber: 3.1 Consensus size: 44
207026938 CCCGCCCATA
207026948 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
207026995 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
207027041 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
207027087 AGTGA
1 AGTGA
207027092 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:207029488 original size:30 final size:30
Alignment explanation
Indices: 207029444--207029531 Score: 101
Period size: 29 Copynumber: 3.0 Consensus size: 30
207029434 CAAAGATAAC
207029444 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
207029473 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * *
207029503 AAG-AATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
207029532 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
29 29 0.58
30 21 0.42
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:207029511 original size:14 final size:15
Alignment explanation
Indices: 207029444--207029522 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
207029434 CAAAGATAAC
*
207029444 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
207029458 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
207029473 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
207029488 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
207029503 AAG-AATCCAGGATA
1 AAGAAATCCAGAATA
207029517 AAGAAA
1 AAGAAA
207029523 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
14 22 0.40
15 32 0.58
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:207034550 original size:40 final size:40
Alignment explanation
Indices: 207034513--207034697 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
207034503 GCTACTCGTT
*
207034513 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
207034553 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
207034593 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
207034632 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
207034673 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
207034698 CATCATTCGA
Statistics
Matches: 133, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
38 3 0.02
39 35 0.26
40 82 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:207034628 original size:79 final size:82
Alignment explanation
Indices: 207034513--207034697 Score: 265
Period size: 79 Copynumber: 2.3 Consensus size: 82
207034503 GCTACTCGTT
*
207034513 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
207034576 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
**
207034593 CAAATGCCTTCGGGACTTA-CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
207034656 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
207034673 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
207034698 CATCATTCGA
Statistics
Matches: 95, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.61
80 34 0.36
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:207042741 original size:40 final size:40
Alignment explanation
Indices: 207042704--207042889 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
207042694 GCTACTCGTT
*
207042704 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
207042744 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
207042784 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
207042824 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
207042865 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
207042890 CATCATTCGA
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 3 0.02
40 118 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:207046972 original size:22 final size:21
Alignment explanation
Indices: 207046947--207047000 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
207046937 TACAGGGCTC
207046947 ACACGCCCGTGTGATCCAAGGG
1 ACACGCCCGTGTGA-CCAAGGG
** * *
207046969 ACACGCTTGTGTGACCCAGGT
1 ACACGCCCGTGTGACCAAGGG
207046990 ACACGCCCGTG
1 ACACGCCCGTG
207047001 CTATAGGCCG
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.17
Consensus pattern (21 bp):
ACACGCCCGTGTGACCAAGGG
Found at i:207057898 original size:39 final size:40
Alignment explanation
Indices: 207057817--207058023 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
207057807 CATTGGAATG
* * *
207057817 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTATT
*
207057857 ATATCCGGGCTAA-ACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTATT
* * **
207057896 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTATT
* * * *
207057936 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTATT
* ** * * * *
207057976 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTATT
207058016 ATATCCGG
1 ATATCCGG
207058024 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
38 3 0.02
39 31 0.22
40 103 0.74
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTATT
Found at i:207060844 original size:30 final size:30
Alignment explanation
Indices: 207060810--207060866 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
207060800 ATGGCTGTGG
* *
207060810 GGCTAAGCTGTGTGACTCACACGGCCATGT
1 GGCTAAGCTATGTGACTCACACAGCCATGT
*
207060840 GGCTAGGCTATGTGACTCACACAGCCA
1 GGCTAAGCTATGTGACTCACACAGCCA
207060867 AGAAACACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (30 bp):
GGCTAAGCTATGTGACTCACACAGCCATGT
Found at i:207064769 original size:40 final size:40
Alignment explanation
Indices: 207064703--207064853 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
207064693 AAATTGAATG
* * * *
207064703 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
207064742 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
207064782 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
207064822 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
207064854 ACGTGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 15 0.17
40 73 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:207064867 original size:40 final size:40
Alignment explanation
Indices: 207064740--207064869 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
207064730 ATGCTGGAAA
* * *
207064740 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
207064780 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
207064820 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
207064860 TTATATCCGG
1 TTATATCCGG
207064870 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:207072793 original size:40 final size:40
Alignment explanation
Indices: 207072708--207072858 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
207072698 AATTGAATGA
* * *
207072708 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
207072748 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
207072789 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
207072828 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
207072859 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:207072872 original size:40 final size:40
Alignment explanation
Indices: 207072745--207072874 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
207072735 ATGCTGGAAA
* * * *
207072745 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
207072785 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
207072825 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
207072865 TTATATCCGG
1 TTATATCCGG
207072875 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:207081259 original size:19 final size:20
Alignment explanation
Indices: 207081235--207081272 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
207081225 GGTCCCACCA
207081235 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
207081254 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
207081273 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:207081650 original size:46 final size:46
Alignment explanation
Indices: 207081497--207081667 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
207081487 AACCCGCCCC
* * * *
207081497 TAAGTGAACTCGGACTCAACTCAAC-AGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
207081542 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
207081590 TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
207081634 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
207081668 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 2 0.02
45 30 0.29
46 50 0.48
47 6 0.06
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:207081659 original size:92 final size:92
Alignment explanation
Indices: 207081502--207081670 Score: 277
Period size: 92 Copynumber: 1.8 Consensus size: 92
207081492 GCCCCTAAGT
* *
207081502 GAACTCGGACTCAACTCAACAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
207081567 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* * *
207081594 GAACTC-GACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAC-AGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
207081658 CGAGTTCGGATGC
65 CGAGTTCGGATGC
207081671 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 13 0.18
92 58 0.82
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:207082124 original size:30 final size:30
Alignment explanation
Indices: 207082090--207082149 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
207082080 ATTTAATACG
207082090 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
207082120 AACTTTTGTATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
207082150 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:207085433 original size:40 final size:40
Alignment explanation
Indices: 207085355--207085578 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
207085345 ACCCAAGTAT
* *
207085355 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
207085394 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
207085434 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
207085474 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
207085517 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
207085557 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
207085579 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 12 0.07
40 117 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:207085551 original size:83 final size:80
Alignment explanation
Indices: 207085355--207085578 Score: 317
Period size: 83 Copynumber: 2.8 Consensus size: 80
207085345 ACCCAAGTAT
* * * *
207085355 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
207085419 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
207085434 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
207085498 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
207085517 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
207085579 CATCCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 67 0.52
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:207092612 original size:92 final size:93
Alignment explanation
Indices: 207092482--207092651 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 93
207092472 GCCCCTAAGT
* * *
207092482 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
207092547 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
207092575 GAACTC-GACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
207092639 CGAGTTCGGATGC
66 CGAGTTCGGATGC
207092652 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 65 0.92
93 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:207092631 original size:46 final size:46
Alignment explanation
Indices: 207092477--207092648 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
207092467 AACCCGCCCC
* * * * *
207092477 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
207092523 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
207092571 TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
207092615 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
207092649 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 2 0.02
45 6 0.06
46 74 0.71
47 6 0.06
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:207102498 original size:40 final size:40
Alignment explanation
Indices: 207102440--207102607 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
207102430 CAATTGAATG
* *
207102440 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
207102481 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
207102520 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
207102560 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
207102600 ATATCCGG
1 ATATCCGG
207102608 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:207102578 original size:80 final size:79
Alignment explanation
Indices: 207102440--207102607 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
207102430 CAATTGAATG
* * *
207102440 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
207102505 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
207102520 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
207102584 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
207102600 ATATCCGG
1 ATATCCGG
207102608 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:207106973 original size:40 final size:40
Alignment explanation
Indices: 207106891--207107067 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
207106881 AAGCCAAGTA
* * *
207106891 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* ** *
207106929 CCTTCGGGACATAGCCCGGATATAGTAACTCATACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
207106969 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
207107009 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
207107049 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
207107068 TTATCATCCA
Statistics
Matches: 125, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 12 0.10
39 15 0.12
40 98 0.78
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:207113887 original size:27 final size:28
Alignment explanation
Indices: 207113857--207113926 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
207113847 ATAGTGAATC
*
207113857 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
207113884 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
207113912 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
207113927 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:207113998 original size:42 final size:42
Alignment explanation
Indices: 207113934--207114040 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
207113924 GCTGTACAAT
* *
207113934 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
207113976 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
207114018 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
207114041 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:207121119 original size:25 final size:26
Alignment explanation
Indices: 207121083--207121148 Score: 100
Period size: 25 Copynumber: 2.6 Consensus size: 26
207121073 ATAGTGAATC
*
207121083 CGCACACTTAGTGCTATAT-ATCAGCT
1 CGCACACTTAGTGCTATATAATCA-AT
207121109 CGCACAC-TAGTGCTATATAATCAAT
1 CGCACACTTAGTGCTATATAATCAAT
207121134 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
207121149 GTACAATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
25 19 0.51
26 18 0.49
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
CGCACACTTAGTGCTATATAATCAAT
Found at i:207121223 original size:42 final size:42
Alignment explanation
Indices: 207121156--207121261 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
207121146 GCTGTACAAT
*
207121156 TTTAAACCCGCACAC-TAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
207121197 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
207121239 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
207121262 GAGACCAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
41 14 0.22
42 49 0.78
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:207122732 original size:40 final size:40
Alignment explanation
Indices: 207122687--207122853 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
207122677 CGGAATATAA
207122687 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
207122727 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
207122767 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
207122807 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
207122846 CCGGATAT
1 CCGGATAT
207122854 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:207122837 original size:80 final size:79
Alignment explanation
Indices: 207122687--207122853 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
207122677 CGGAATATAA
* *
207122687 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
207122752 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
207122767 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
207122829 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
207122846 CCGGATAT
1 CCGGATAT
207122854 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:207123694 original size:17 final size:19
Alignment explanation
Indices: 207123671--207123716 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
207123661 AAGAAGCATG
207123671 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
207123689 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
207123707 AATCATGCTC
1 AATCATGCTC
207123717 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:207132240 original size:40 final size:40
Alignment explanation
Indices: 207132137--207132389 Score: 367
Period size: 40 Copynumber: 6.5 Consensus size: 40
207132127 CGGATGATAA
* *
207132137 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
207132176 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
207132215 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
207132255 CCGGGCTAAGT-CCGAAGGCATTTGTG-G-GTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
207132292 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
207132332 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
207132372 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
207132390 TACTTGGTTT
Statistics
Matches: 196, Mismatches: 12, Indels: 12
0.89 0.05 0.05
Matches are distributed among these distances:
37 20 0.10
38 40 0.20
39 52 0.27
40 84 0.43
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:207132309 original size:77 final size:79
Alignment explanation
Indices: 207132137--207132389 Score: 372
Period size: 77 Copynumber: 3.2 Consensus size: 79
207132127 CGGATGATAA
* * ** *
207132137 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTGT
207132201 GCGAGTTACTATAT
66 GCGAGTTACTATAT
207132215 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTGT
207132280 G-G-GTTACTATAT
66 GCGAGTTACTATAT
207132292 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGT-CCGAAGGCATTTG
* *
207132357 AGCAAG-TAGCTATAT
65 TGCGAGTTA-CTATAT
* *
207132372 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
207132390 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
77 61 0.38
78 50 0.31
79 41 0.25
80 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTGT
GCGAGTTACTATAT
Found at i:207132340 original size:117 final size:117
Alignment explanation
Indices: 207132133--207132356 Score: 371
Period size: 117 Copynumber: 1.9 Consensus size: 117
207132123 TATTCGGATG
*
207132133 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCGGGCTAAGCCCGAAGGCATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTGACTAATCCGGGCTAAGCCCGAAGGCATT
*
207132198 TGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
65 TGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
207132251 ATAACCGGGCTAAGT-CCGAAGGCATTTGTG-GGTTACTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTGACTA-ATCCGGGCTAAG-CCCGAAGGCAT
207132314 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
64 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
207132357 AGCAAGTAGC
Statistics
Matches: 100, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
115 6 0.06
116 11 0.11
117 68 0.68
118 15 0.15
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (117 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTGACTAATCCGGGCTAAGCCCGAAGGCATTT
GTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:207132370 original size:117 final size:116
Alignment explanation
Indices: 207132133--207132389 Score: 367
Period size: 117 Copynumber: 2.2 Consensus size: 116
207132123 TATTCGGATG
*
207132133 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCGGGCTAAGCCCGAAGGCATT
1 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGC-AGTGACTAATCCGGGCTAAGCCCGAAGGCATT
* * *
207132198 TGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
64 TGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
* *
207132251 ATAACCGGGCTAAGTCCGAAGGCATTTGTG-GGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATAACCGGGCTAAGTCCGAAGGCATTTGTGCAGTGACTA-ATCCGGGCTAAG-CCCGAAGGCATT
207132315 TGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
64 TGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CT
* *
207132368 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCT-AAGTCCGAAGG
207132390 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
115 6 0.05
116 17 0.13
117 89 0.70
118 15 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (116 bp):
ATAACCGGGCTAAGTCCGAAGGCATTTGTGCAGTGACTAATCCGGGCTAAGCCCGAAGGCATTTG
TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
Found at i:207141122 original size:40 final size:39
Alignment explanation
Indices: 207141058--207141224 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 39
207141048 TCTTCGGAAT
* **
207141058 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCAGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCAGGTC
* * *** * *
207141097 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCAGGTC
207141137 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCAGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCAGGTC
* * * *
207141177 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCA-CAATGCCTTCAGGTC
207141217 TTAGCCCG
1 TTAGCCCG
207141225 AGTATCATTC
Statistics
Matches: 103, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 97 0.94
41 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCAGGTC
Found at i:207141185 original size:80 final size:80
Alignment explanation
Indices: 207141049--207141224 Score: 212
Period size: 80 Copynumber: 2.2 Consensus size: 80
207141039 AACCGAGCTT
* * * * **
207141049 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCAGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCAGGTCTTAACCCGGATATAAT
*
207141113 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* ** *
207141128 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCAGGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCAGGTCTTAACCCGGATATAA
* *
207141192 TCACTAGCATAAATGC
65 TAACTAGCACAAATGC
207141208 CTTCGGGACTTAGCCCG
1 CTTCGGGACTTAGCCCG
207141225 AGTATCATTC
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 10 0.12
80 69 0.85
81 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCAGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:207149280 original size:40 final size:40
Alignment explanation
Indices: 207149162--207149328 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
207149152 TCTTCGGAAT
* * *
207149162 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
207149201 TTAACCC-GATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
207149240 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
207149280 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
207149320 TTAGCCCGG
1 TTAGCCCGG
207149329 GTATCATTCA
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 33 0.31
40 71 0.68
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:207151766 original size:40 final size:40
Alignment explanation
Indices: 207151665--207151886 Score: 360
Period size: 40 Copynumber: 5.6 Consensus size: 40
207151655 CGGATGATAA
* *
207151665 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
207151704 TCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
207151743 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
207151783 CCGGGCTAAGTCCC-AAAGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
207151822 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
207151862 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
207151887 AGCAAGTAGC
Statistics
Matches: 169, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 23 0.14
39 57 0.34
40 89 0.53
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:207151819 original size:79 final size:80
Alignment explanation
Indices: 207151665--207151886 Score: 369
Period size: 79 Copynumber: 2.8 Consensus size: 80
207151655 CGGATGATAA
* * **
207151665 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCGGGCTAAG-CCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
207151728 TACGAGTTACTATAT
66 TACGAGTTACTATAT
*
207151743 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCC-AAAGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
*
207151807 TGCGAGTTACTATAT
66 TACGAGTTACTATAT
207151822 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
207151887 AGCAAGTAGC
Statistics
Matches: 134, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
78 35 0.26
79 87 0.65
80 12 0.09
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TACGAGTTACTATAT
Found at i:207151900 original size:119 final size:118
Alignment explanation
Indices: 207151661--207151893 Score: 369
Period size: 119 Copynumber: 2.0 Consensus size: 118
207151651 CATTCGGATG
* * *
207151661 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCGGGCTAAGCCCGAAGGCATT
1 ATAACCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTGACTAATCCGGGCTAAGCCCGAAGGCATT
* * *
207151726 TGTACGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
*
207151779 ATAACCGGGCTAAGTCCC-AAAGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTGACTA-ATCCGGGCTAAG-CCCGAAGGCA
*
207151843 TTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGT
64 TTTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGT
207151894 AGCTATATCT
Statistics
Matches: 105, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
117 19 0.18
118 29 0.28
119 57 0.54
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (118 bp):
ATAACCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTGACTAATCCGGGCTAAGCCCGAAGGCATT
TGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
Found at i:207169030 original size:21 final size:22
Alignment explanation
Indices: 207168990--207169030 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
207168980 TTTGAAATGT
207168990 CACACGGGCGTGTGGCCCCTCC
1 CACACGGGCGTGTGGCCCCTCC
207169012 CACACGGGCGTGT-GCCCCT
1 CACACGGGCGTGTGGCCCCT
207169031 GTGTTAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.10, C:0.44, G:0.32, T:0.15
Consensus pattern (22 bp):
CACACGGGCGTGTGGCCCCTCC
Found at i:207170534 original size:41 final size:41
Alignment explanation
Indices: 207170489--207170606 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
207170479 TGAAAGATAA
207170489 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
207170530 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
207170560 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
207170601 ATGTAG
1 ATGTAG
207170607 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:207170545 original size:71 final size:71
Alignment explanation
Indices: 207170457--207170620 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
207170447 GAGATGTATC
207170457 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
207170522 AGGACA
66 AGGACA
207170528 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
207170593 AGGACA
66 AGGACA
207170599 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
207170621 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:207177013 original size:24 final size:24
Alignment explanation
Indices: 207176769--207177011 Score: 423
Period size: 24 Copynumber: 10.1 Consensus size: 24
207176759 GCAAAGACCA
207176769 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
207176793 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
207176817 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
207176841 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
207176865 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
207176889 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
207176913 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
207176937 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
207176961 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
207176985 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
207177009 TAT
1 TAT
207177012 AGTCACATTC
Statistics
Matches: 213, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 213 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:207185020 original size:24 final size:24
Alignment explanation
Indices: 207184776--207185018 Score: 423
Period size: 24 Copynumber: 10.1 Consensus size: 24
207184766 GCAAAGACCA
207184776 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
207184800 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
207184824 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
207184848 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
207184872 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
207184896 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
207184920 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
207184944 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
207184968 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
207184992 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
207185016 TAT
1 TAT
207185019 AGTCACATTC
Statistics
Matches: 213, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 213 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:207193300 original size:40 final size:39
Alignment explanation
Indices: 207193256--207193437 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
207193246 GTTCAAAACA
* * ** * *
207193256 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
207193296 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
207193336 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
207193375 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
207193414 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
207193438 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:207193367 original size:39 final size:39
Alignment explanation
Indices: 207193286--207193438 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
207193276 TATGGTAACC
* *
207193286 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
207193326 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
207193365 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
207193404 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
207193439 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:207198629 original size:39 final size:39
Alignment explanation
Indices: 207198586--207198753 Score: 210
Period size: 39 Copynumber: 4.3 Consensus size: 39
207198576 TCTTTAACCT
** * *
207198586 GGATATTTTTCCAGCACGTAGCCTGTGGACCTCAAGTCC
1 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
* * * *
207198625 GGATATATTTCTAGCATATAGCCTGTGGATCTCATGTCC
1 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
* * *
207198664 GGATATATTTCTAGCATATAGCCTGCGGATCTCATGTCC
1 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
* *
207198703 AGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCT
1 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
207198742 GGATATATTTTC
1 GGATAT-TTTTC
207198754 AATCTCATAC
Statistics
Matches: 115, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 110 0.96
40 5 0.04
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (39 bp):
GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
Found at i:207202043 original size:22 final size:22
Alignment explanation
Indices: 207201974--207202043 Score: 95
Period size: 22 Copynumber: 3.2 Consensus size: 22
207201964 AGCCTTTAGT
*
207201974 CGTCCTGTCTATGGCATTGAGC
1 CGTCCTGTCTACGGCATTGAGC
* ** *
207201996 CATCCTGTCTACGGTGTTGAGT
1 CGTCCTGTCTACGGCATTGAGC
207202018 CGTCCTGTCTACGGCATTGAGC
1 CGTCCTGTCTACGGCATTGAGC
207202040 CGTC
1 CGTC
207202044 TTGTTGACTT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.13, C:0.29, G:0.27, T:0.31
Consensus pattern (22 bp):
CGTCCTGTCTACGGCATTGAGC
Found at i:207205552 original size:18 final size:20
Alignment explanation
Indices: 207205516--207205562 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
207205506 AGTTGTAAGT
207205516 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
207205536 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
207205555 ATGATATA
1 AT-ATATA
207205563 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:207207800 original size:40 final size:40
Alignment explanation
Indices: 207207756--207207868 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
207207746 TGCTGGAAAT
* * *
207207756 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* * *
207207796 TATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* *
207207836 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGC
207207869 ACGTGATTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.05
40 57 0.92
41 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:207215779 original size:40 final size:40
Alignment explanation
Indices: 207215713--207215878 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
207215703 AAATTGAATG
* * *
207215713 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
207215752 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
207215792 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
207215831 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
207215871 ATATCCGG
1 ATATCCGG
207215879 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 42 0.40
40 57 0.55
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:207222452 original size:93 final size:93
Alignment explanation
Indices: 207222340--207222511 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
207222330 CGCCCATAAG
* *
207222340 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
207222405 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
207222433 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
207222498 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
207222512 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:207222508 original size:46 final size:46
Alignment explanation
Indices: 207222333--207222508 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
207222323 TGTAACCCGC
* * *
207222333 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
207222379 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
207222429 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
207222472 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
207222509 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:207226503 original size:28 final size:29
Alignment explanation
Indices: 207226436--207226536 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
207226426 ATAGTGAATC
*
207226436 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
207226465 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
207226493 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
207226523 CGCACACTTAGTGC
1 CGCACACTTAGTGC
207226537 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:207234289 original size:28 final size:29
Alignment explanation
Indices: 207234222--207234322 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
207234212 ATAGTGAATC
*
207234222 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
207234251 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
207234279 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
207234309 CGCACACTTAGTGC
1 CGCACACTTAGTGC
207234323 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:207236152 original size:40 final size:40
Alignment explanation
Indices: 207236108--207236333 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
207236098 GCTACTCGTT
* ** *
207236108 CAAATACCTTCGGGACAAAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
207236148 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
207236188 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
*
207236228 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
207236268 CAATTGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
* *
207236309 CAGA-GCCTTCGTGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
207236334 CATCATTCGA
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 156 0.92
41 10 0.06
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:207236226 original size:80 final size:80
Alignment explanation
Indices: 207236136--207236333 Score: 294
Period size: 80 Copynumber: 2.5 Consensus size: 80
207236126 AGCCCGGTTA
*
207236136 TAGTAGCTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
207236201 ATCTTAGTCCGGATT
66 ATCTTAGTCCGGATT
*
207236216 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATTTAGTAACTCGCACAATTGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATTTAGTAACTCGCACAAATGCCTTC
207236279 GGATCTTAGTCCGGATT
64 GGATCTTAGTCCGGATT
* * * *
207236296 TAGTAACTTAGCACAGA-GCCTTCGTGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTCGGGACTTATCCCGGA
207236334 CATCATTCGA
Statistics
Matches: 107, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
79 3 0.03
80 94 0.88
81 10 0.09
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
ATCTTAGTCCGGATT
Found at i:207245103 original size:80 final size:80
Alignment explanation
Indices: 207245019--207245167 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
207245009 TATGGTAACC
* * * *
207245019 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
207245083 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
207245099 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
207245164 CCGG
66 CCGG
207245168 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:207245109 original size:40 final size:38
Alignment explanation
Indices: 207245060--207245167 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
207245050 ATCACGATTT
*
207245060 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
207245100 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
207245140 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
207245168 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:207253305 original size:40 final size:40
Alignment explanation
Indices: 207253260--207253426 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
207253250 CGGAATATAA
207253260 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
207253300 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
207253340 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
207253380 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
207253419 CCGGATAT
1 CCGGATAT
207253427 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:207253410 original size:80 final size:79
Alignment explanation
Indices: 207253276--207253424 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
207253266 ATAACCACGT
*
207253276 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
207253341 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
207253356 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
207253419 CCGGAT
64 CCGGAT
207253425 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:207256355 original size:28 final size:28
Alignment explanation
Indices: 207256318--207256373 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
207256308 CTTCATTCAA
*
207256318 TCTGTAACACCCCGAACCCGAGACCATC
1 TCTGTAACACCCCGAACCCAAGACCATC
207256346 TCTGTAACACCCCGAACCCAAGACCATC
1 TCTGTAACACCCCGAACCCAAGACCATC
207256374 GCCGGTGTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.43, G:0.12, T:0.14
Consensus pattern (28 bp):
TCTGTAACACCCCGAACCCAAGACCATC
Found at i:207257866 original size:40 final size:40
Alignment explanation
Indices: 207257792--207257937 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
207257782 CCGCACCAAG
* * * * * *
207257792 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
207257832 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
207257872 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
207257912 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
207257938 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:207257952 original size:40 final size:40
Alignment explanation
Indices: 207257824--207257975 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
207257814 ATCACGATTT
* * * **
207257824 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
207257864 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
207257904 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
207257944 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
207257976 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:207269706 original size:40 final size:40
Alignment explanation
Indices: 207269648--207269815 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
207269638 CAATTGAATG
* *
207269648 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
207269689 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * * * *
207269728 ATATCCGGGCGAATACCCGAAGGCATTTGTACGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
* ** *
207269768 ATATCTGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
207269808 ATATCCGG
1 ATATCCGG
207269816 TTGTATTCCG
Statistics
Matches: 104, Mismatches: 15, Indels: 17
0.76 0.11 0.12
Matches are distributed among these distances:
39 8 0.08
40 92 0.88
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:207277706 original size:40 final size:40
Alignment explanation
Indices: 207277650--207277817 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
207277640 CAATTGAATG
* *
207277650 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
207277691 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
207277730 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
207277770 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
207277810 ATATCCGG
1 ATATCCGG
207277818 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:207277783 original size:80 final size:79
Alignment explanation
Indices: 207277650--207277817 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
207277640 CAATTGAATG
* *
207277650 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
207277715 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
207277730 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
207277794 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
207277810 ATATCCGG
1 ATATCCGG
207277818 TTGTATTCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:207281921 original size:40 final size:40
Alignment explanation
Indices: 207281832--207281977 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
207281822 CGCTGACTCA
* *
207281832 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGG-TTATGACACTGGCTC
* * * * * *
207281873 GAAGGCCCTTCGAAACTAGGTTCGGTTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGTTATGACACTGGCTC
*
207281913 AAAAGCCCTTCGAGACCAAGCTCGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGTTATGACACTGGCTC
207281953 AAAAGCCCTTCGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGG
207281978 ATTTAAACCC
Statistics
Matches: 89, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 70 0.79
41 19 0.21
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (40 bp):
AAAAGCCCTTCGAGACCAAGCTCGGTTATGACACTGGCTC
Found at i:207290039 original size:41 final size:41
Alignment explanation
Indices: 207289986--207290094 Score: 139
Period size: 40 Copynumber: 2.7 Consensus size: 41
207289976 CGCTGACTCA
*
207289986 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
* * * * * * *
207290027 GAAGGCCCTTCGAAACTAGGTTC-GATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
207290067 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
207290095 TAAACCCCGA
Statistics
Matches: 53, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
40 32 0.60
41 21 0.40
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC
Found at i:207291426 original size:40 final size:40
Alignment explanation
Indices: 207291381--207291548 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
207291371 CGGAATATAA
207291381 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
207291421 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
207291461 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
207291501 CCGGATATAATTTCCAGCATAATTGTCC-TCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATG-CCTTCGGGTCTTAGC
207291541 CCGGATAT
1 CCGGATAT
207291549 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 104 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:207299400 original size:40 final size:38
Alignment explanation
Indices: 207299355--207299545 Score: 115
Period size: 40 Copynumber: 5.2 Consensus size: 38
207299345 CGGAATATAA
207299355 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAT-AC-TGCACAAATGCCTTCGGGTCTTAGC
* *
207299395 CCGGATAGAATACTCGCACGAATGCCTTC-GGTC--AGC
1 CCGGATATAATACT-GCACAAATGCCTTCGGGTCTTAGC
*
207299431 CCGG--AT-GT-C-G--C---TGCCTTCGGGTCTTAGC
1 CCGGATATAATACTGCACAAATGCCTTCGGGTCTTAGC
** * *
207299459 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ATACT-GCACAAATGCCTTCGGGTCTTAGC
* * *
207299499 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATACTGCA-CA-AA-TGCCTTCGGGTCTTAGC
207299538 CCGGATAT
1 CCGGATAT
207299546 CATTCAATTT
Statistics
Matches: 118, Mismatches: 14, Indels: 39
0.69 0.08 0.23
Matches are distributed among these distances:
25 7 0.06
26 4 0.03
28 8 0.07
30 3 0.03
32 1 0.01
33 2 0.02
34 1 0.01
35 1 0.01
36 7 0.06
37 3 0.03
38 8 0.07
39 29 0.25
40 44 0.37
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (38 bp):
CCGGATATAATACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:207307330 original size:40 final size:40
Alignment explanation
Indices: 207307285--207307452 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
207307275 CGGAATATAA
207307285 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
207307325 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
207307365 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
207307405 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
207307445 CCGGATAT
1 CCGGATAT
207307453 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:207313663 original size:20 final size:20
Alignment explanation
Indices: 207313638--207313707 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
207313628 TAAGCTTATG
207313638 GTAAGTAAATGGAATGGAAA
1 GTAAGTAAATGGAATGGAAA
** *
207313658 GTAAGTAAATAAAATGAAAAA
1 GTAAGTAAATGGAATG-GAAA
* *
207313679 GTAAGTAAATGGACTGGTAA
1 GTAAGTAAATGGAATGGAAA
207313699 GTAAG-AAAT
1 GTAAGTAAAT
207313708 TGAGTGCTTC
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
19 4 0.10
20 21 0.51
21 16 0.39
ACGTcount: A:0.53, C:0.01, G:0.24, T:0.21
Consensus pattern (20 bp):
GTAAGTAAATGGAATGGAAA
Found at i:207315027 original size:122 final size:123
Alignment explanation
Indices: 207314832--207315053 Score: 374
Period size: 122 Copynumber: 1.8 Consensus size: 123
207314822 ATATTTTACT
* * *
207314832 TATACGAGCCCTCGAGGCCCTAAATACACGTTAGAAACAAGTTGGGACTAAATTGGGAACTTAGA
1 TATACGAGCCCTCGAGGCCCAAAATACACGTTAGAAACAAGTTGGGACTAAATTGGAAACTCAGA
*
207314897 GAATTTTTCAAGAAACAAGGAAATTTTTCAAAACTATTCAAACATACAGATTTTCCCA
66 GAATTTTTCAAGAAACAAGGAAAATTTTCAAAACTATTCAAACATACAGATTTTCCCA
* **
207314955 TATACGAGCCCTCGAGTCCCAAAATACGTGTTAGAAA-AAGTTGGGACTAAATTGGAAACTCAGA
1 TATACGAGCCCTCGAGGCCCAAAATACACGTTAGAAACAAGTTGGGACTAAATTGGAAACTCAGA
207315019 GAATTTTTCAAGAAACAAGGAAAATTTTCAAAACT
66 GAATTTTTCAAGAAACAAGGAAAATTTTCAAAACT
207315054 GTAAAGGTCA
Statistics
Matches: 92, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
122 59 0.64
123 33 0.36
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (123 bp):
TATACGAGCCCTCGAGGCCCAAAATACACGTTAGAAACAAGTTGGGACTAAATTGGAAACTCAGA
GAATTTTTCAAGAAACAAGGAAAATTTTCAAAACTATTCAAACATACAGATTTTCCCA
Found at i:207316738 original size:40 final size:40
Alignment explanation
Indices: 207316693--207316860 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
207316683 CGGAATATAA
207316693 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
207316733 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
207316773 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
207316813 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
207316853 CCGGATAT
1 CCGGATAT
207316861 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:207319497 original size:40 final size:39
Alignment explanation
Indices: 207319452--207319616 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 39
207319442 CGGAATATAA
207319452 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
207319492 CCGGATAGAATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
207319530 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * *
207319570 CCGGATATAATTTC-CAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA--TCACTGCACAAATGCCTTCGGGTCTTAGC
207319609 CCGGATAT
1 CCGGATAT
207319617 CATTCAATTT
Statistics
Matches: 103, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
38 32 0.31
39 13 0.13
40 56 0.54
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:207327508 original size:40 final size:40
Alignment explanation
Indices: 207327463--207327629 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
207327453 CGGAATATAA
207327463 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
207327503 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
207327543 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
207327583 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
207327622 CCGGATAT
1 CCGGATAT
207327630 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:207330014 original size:21 final size:21
Alignment explanation
Indices: 207329976--207330015 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
207329966 CATGTAATAG
*
207329976 TTTGTATCAAACTCTTACCAT
1 TTTGTATCAAACTATTACCAT
* *
207329997 TTTGTATCAGAGTATTACC
1 TTTGTATCAAACTATTACC
207330016 TGTTGAACCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42
Consensus pattern (21 bp):
TTTGTATCAAACTATTACCAT
Found at i:207334077 original size:27 final size:27
Alignment explanation
Indices: 207334035--207334154 Score: 104
Period size: 27 Copynumber: 4.4 Consensus size: 27
207334025 TGGATAAGTT
*
207334035 GTAGAATTACC-GAAATACCCTTGTAG
1 GTAGAATTACCAAAAATACCCTTGTAG
*
207334061 GATAGAATTA-TAAAAATACCCTTGTAAG
1 G-TAGAATTACCAAAAATACCCTTGT-AG
* *
207334089 GTAGAATTACCGAAAA-ACCCATGTAGG
1 GTAGAATTACCAAAAATACCCTTGTA-G
* * *
207334116 GTAGAATTACC-GAGATACCCTTGTGGG
1 GTAGAATTACCAAAAATACCCTTGT-AG
*
207334143 GTAAAATTACCA
1 GTAGAATTACCA
207334155 TTTTGCCCCT
Statistics
Matches: 76, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
26 4 0.05
27 65 0.86
28 7 0.09
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCAAAAATACCCTTGTAG
Found at i:207334134 original size:54 final size:54
Alignment explanation
Indices: 207334035--207334153 Score: 148
Period size: 54 Copynumber: 2.2 Consensus size: 54
207334025 TGGATAAGTT
* * *
207334035 GTAGAATTACCGAAATACCCTTGTAGGATAGAATTATAAAAATACCCTTGTAAG
1 GTAGAATTACCGAAAAACCCATGTAGGATAGAATTACAAAAATACCCTTGTAAG
* ** * **
207334089 GTAGAATTACCGAAAAACCCATGTAGGGTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAAAACCCATGTAGGATAGAATTACAAAAATACCCTTGTAAG
*
207334143 GTAAAATTACC
1 GTAGAATTACC
207334154 ATTTTGCCCC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (54 bp):
GTAGAATTACCGAAAAACCCATGTAGGATAGAATTACAAAAATACCCTTGTAAG
Found at i:207334328 original size:7 final size:7
Alignment explanation
Indices: 207334316--207334340 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
207334306 GGAGATATCG
207334316 TCGTCAT
1 TCGTCAT
207334323 TCGTCAT
1 TCGTCAT
207334330 TCGTCAT
1 TCGTCAT
207334337 TCGT
1 TCGT
207334341 AAGTCTAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.28, G:0.16, T:0.44
Consensus pattern (7 bp):
TCGTCAT
Found at i:207334860 original size:27 final size:26
Alignment explanation
Indices: 207334816--207334867 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
207334806 CTCGCTGCAA
*
207334816 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
207334843 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
207334868 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:207338374 original size:27 final size:26
Alignment explanation
Indices: 207338330--207338381 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
207338320 CTCGCTGCAA
*
207338330 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
207338357 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
207338382 GCACCTCGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:207338456 original size:27 final size:26
Alignment explanation
Indices: 207338419--207338477 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
207338409 CCACATATAT
*
207338419 ATAT-TGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
207338444 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
207338471 ATATCTG
1 ATATCTG
207338478 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.14
26 3 0.11
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:207345016 original size:40 final size:40
Alignment explanation
Indices: 207344957--207345098 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
207344947 AAATTGAATG
* * *
207344957 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
207344997 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
207345037 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
207345077 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
207345099 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:207345099 original size:40 final size:39
Alignment explanation
Indices: 207344996--207345124 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
207344986 TGCTGGAAAT
* * *
207344996 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
207345036 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
207345076 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
207345116 TATATCCGG
1 TATATCCGG
207345125 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:207358190 original size:79 final size:79
Alignment explanation
Indices: 207358058--207358223 Score: 282
Period size: 79 Copynumber: 2.1 Consensus size: 79
207358048 GGATGATAAC
*
207358058 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGA
207358123 GCGAGTTA-CTATAT
66 GCGAG-TAGCTATAT
207358137 ACGGGCTAAGTCCCGAAGGCATTT-TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
207358201 AGCGAGTAGCTATAT
65 AGCGAGTAGCTATAT
*
207358216 CCGGCTAA
1 CGGGCTAA
207358224 ATTTCGAAGG
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
78 9 0.11
79 51 0.61
80 23 0.28
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGA
GCGAGTAGCTATAT
Found at i:207358233 original size:39 final size:40
Alignment explanation
Indices: 207358057--207358223 Score: 286
Period size: 40 Copynumber: 4.2 Consensus size: 40
207358047 CGGATGATAA
207358057 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
207358097 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
207358137 ACGGGCTAAGTCCCGAAGGCATTT-TGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
207358176 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
207358216 CC-GGCTAA
1 CCGGGCTAA
207358224 ATTTCGAAGG
Statistics
Matches: 122, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
39 46 0.38
40 76 0.62
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:207360589 original size:40 final size:40
Alignment explanation
Indices: 207360557--207360730 Score: 192
Period size: 40 Copynumber: 4.3 Consensus size: 40
207360547 TCGTTCAAAC
* * *
207360557 GCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCGTAAAT
1 GCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCATAAAT
*
207360597 GCCTTCGGGACTTAACCTGGATTTAGTAACTCGCATAAAT
1 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
* *
207360637 GCCTTCGGGACTTAACCCGGATTTAGTAACTCACACAAAT
1 GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
** * * * *
207360677 GCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-
1 GCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCATAAAT
207360717 GCCTTCGGGACTTA
1 GCCTTCGGGACTTA
207360731 GCCTGGACAT
Statistics
Matches: 117, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
39 3 0.03
40 102 0.87
41 12 0.10
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATAAAT
Found at i:207367509 original size:93 final size:93
Alignment explanation
Indices: 207367397--207367568 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
207367387 CGCCCATAAG
* *
207367397 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
207367462 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
207367490 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
207367555 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
207367569 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:207367565 original size:46 final size:46
Alignment explanation
Indices: 207367390--207367565 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
207367380 TGTAACCCGC
* * *
207367390 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
207367436 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
207367486 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
207367529 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
207367566 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:207373737 original size:29 final size:29
Alignment explanation
Indices: 207373703--207373805 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
207373693 TAATCAGCCG
** *
207373703 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
207373732 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
207373761 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
207373790 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
207373806 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:207381476 original size:29 final size:29
Alignment explanation
Indices: 207381442--207381544 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
207381432 TAATCAGCCG
** *
207381442 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
207381471 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
207381500 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
207381529 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
207381545 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:207386275 original size:40 final size:40
Alignment explanation
Indices: 207386167--207386296 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
207386157 CGGGATTTAA
* * * *
207386167 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCGACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
207386207 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCGACTCGCACGAATGCCTTCGGGTCTTAGC
*
207386247 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCGACTCGCACGAATGCCTTCGGGTCTTAGC
207386287 CCGGATATAT
1 CCGGATATAT
207386297 TTCCAATGTT
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCGACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:207391746 original size:29 final size:29
Alignment explanation
Indices: 207391707--207391785 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
207391697 CTTAATAATC
*
207391707 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
207391737 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
207391766 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
207391786 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:207392445 original size:2 final size:2
Alignment explanation
Indices: 207392427--207392460 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
207392417 TGATGGCCGA
* *
207392427 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
207392461 CAACTATACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:207399830 original size:29 final size:29
Alignment explanation
Indices: 207399791--207399869 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
207399781 CTTAATAATC
*
207399791 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
207399821 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
207399850 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
207399870 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:207402955 original size:39 final size:39
Alignment explanation
Indices: 207402897--207403023 Score: 141
Period size: 38 Copynumber: 3.3 Consensus size: 39
207402887 CGGGACTTTA
* * *
207402897 CCCGGATATCACGATTTGCACAAATGCCTTCGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGTCTTAG
* *
207402936 CCCGGATTTAACAACTTGCAC-GATGCCTTCGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGTCTTAG
* * * *
207402974 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTA-
1 CCCGGATATAACAACTTGCACAAATGCCTTC-GGTCTTAG
*
207403013 ACCGGATATAA
1 CCCGGATATAA
207403024 ATTTCAGCAT
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
38 33 0.45
39 33 0.45
40 7 0.10
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (39 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGTCTTAG
Found at i:207405046 original size:15 final size:16
Alignment explanation
Indices: 207405026--207405055 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
207405016 TAATTACTAA
207405026 TATATAAT-TATATTT
1 TATATAATATATATTT
207405041 TATATAATATATATT
1 TATATAATATATATT
207405056 AGTTGCTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATAATATATATTT
Found at i:207406403 original size:22 final size:22
Alignment explanation
Indices: 207406378--207406419 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
207406368 TTAAGATTTT
207406378 TATAATAAT-AAATATAATATAA
1 TATAATAATGAAATA-AATATAA
207406400 TATAATAATGAAATAAATAT
1 TATAATAATGAAATAAATAT
207406420 CAAGAGATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
TATAATAATGAAATAAATATAA
Found at i:207410438 original size:49 final size:49
Alignment explanation
Indices: 207410374--207410489 Score: 178
Period size: 49 Copynumber: 2.4 Consensus size: 49
207410364 TAGCCAAAGC
* *
207410374 TATCTGGTACGCATAGTAGCCTGCACATAATACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACATAATACTACACATGCGACCAAT
* * *
207410423 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACATAATACTACACATGCGACCAAT
*
207410472 TATCCGGTACACGTAGTA
1 TATCCGGTACACATAGTA
207410490 CTACACGCGT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 61 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACATAATACTACACATGCGACCAAT
Found at i:207413190 original size:17 final size:19
Alignment explanation
Indices: 207413168--207413213 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
207413158 ACATACATAC
207413168 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
207413185 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
*
207413204 AATACTAATT
1 AATAATAATT
207413214 AAAATTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:207418001 original size:17 final size:19
Alignment explanation
Indices: 207417979--207418024 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
207417969 ACATACATAC
207417979 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
207417996 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
*
207418015 AATACTAATT
1 AATAATAATT
207418025 AAAATTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:207420155 original size:58 final size:58
Alignment explanation
Indices: 207420034--207420159 Score: 148
Period size: 58 Copynumber: 2.2 Consensus size: 58
207420024 TATCGTATTA
* * * * *
207420034 CAGGATTACTAGTCCAGGCTAAATCCATTATGTAACATATGCTCAAAAAGAGCTTAAT
1 CAGGATTACCAGTCAAGGCTAAACCCAATATGTAACATATGCTCAAAAAGAGATTAAT
* * *
207420092 TAGGATTACCAGTCAAGGCTAAACCCTAAT-TGTAACATATGCTC-GAGAGAGATTATAT
1 CAGGATTACCAGTCAAGGCTAAACCC-AATATGTAACATATGCTCAAAAAGAGATTA-AT
207420150 CAGGATTACC
1 CAGGATTACC
207420160 TGTCTGGGCT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
57 8 0.14
58 47 0.82
59 2 0.04
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (58 bp):
CAGGATTACCAGTCAAGGCTAAACCCAATATGTAACATATGCTCAAAAAGAGATTAAT
Found at i:207425139 original size:80 final size:80
Alignment explanation
Indices: 207425055--207425203 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
207425045 TATGGTAACC
* * * *
207425055 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
207425119 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
207425135 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
207425200 CCGG
66 CCGG
207425204 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:207425145 original size:40 final size:38
Alignment explanation
Indices: 207425096--207425203 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
207425086 ATCACGATTT
*
207425096 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
207425136 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
207425176 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
207425204 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:207436392 original size:30 final size:30
Alignment explanation
Indices: 207436337--207436496 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
207436327 ATAGTGAATC
207436337 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
207436366 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
207436396 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
207436425 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
207436453 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
207436483 CGCACACTTAGTGC
1 CGCACACTTAGTGC
207436497 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:207436429 original size:59 final size:57
Alignment explanation
Indices: 207436337--207436496 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
207436327 ATAGTGAATC
*
207436337 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
207436396 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
207436453 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
207436497 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:207445737 original size:71 final size:71
Alignment explanation
Indices: 207445651--207445814 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
207445641 CGATTTGTCT
207445651 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
207445716 CTTTCA
66 CTTTCA
207445722 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
207445787 CTTTCA
66 CTTTCA
207445793 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
207445815 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Done.