Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 662 of 770
Found at i:208095924 original size:20 final size:20
Alignment explanation
Indices: 208095899--208095965 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
208095889 TTATGAATAC
208095899 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
208095919 ATCATGTGTATATCATACAT
1 ATCATGTGCATATCATACAT
*
208095939 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
208095959 ACCATGT
1 ATCATGT
208095966 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:208096034 original size:25 final size:25
Alignment explanation
Indices: 208096002--208096049 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
208095992 ATACATAAAC
* * *
208096002 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
208096027 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
208096050 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:208099587 original size:17 final size:18
Alignment explanation
Indices: 208099545--208099593 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
208099535 AGTTGAAAAG
208099545 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
208099564 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
208099581 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
208099594 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:208100481 original size:40 final size:40
Alignment explanation
Indices: 208100415--208100581 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
208100405 AAATTGAATG
* * *
208100415 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
208100454 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
208100494 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
208100534 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
208100574 ATATCCGG
1 ATATCCGG
208100582 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:208108538 original size:38 final size:38
Alignment explanation
Indices: 208108426--208108663 Score: 247
Period size: 37 Copynumber: 6.2 Consensus size: 38
208108416 TCTTCGGAAT
* *
208108426 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAA-CAC-TGCACAAATGCCTTCGGGTC
* * *
208108465 TTAACCCGGATTTGGTAAC-TTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGA--T-ATAACACTGCACAAATGCCTTCGGGTC
208108505 TTAGCCCGGATATAACAACT-CACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTGCACAAATGCCTTCGGGTC
* * *
208108543 TTAGCCCGG-TTTAACTC-GAACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACACTGCACAAATGCCTTCGGGTC
*
208108579 TTAGCCCGGATATAACACTCGCACGAATGCCTTC-GGTC
1 TTAGCCCGGATATAACACT-GCACAAATGCCTTCGGGTC
* * *
208108617 -TAGCCCGGATATATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACACT-GCACAAATGCCTTCGGGTC
208108655 TTAGCCCGG
1 TTAGCCCGG
208108664 TATCATTCAA
Statistics
Matches: 167, Mismatches: 20, Indels: 24
0.79 0.09 0.11
Matches are distributed among these distances:
36 27 0.16
37 44 0.26
38 35 0.21
39 24 0.14
40 32 0.19
42 2 0.01
43 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (38 bp):
TTAGCCCGGATATAACACTGCACAAATGCCTTCGGGTC
Found at i:208108645 original size:37 final size:39
Alignment explanation
Indices: 208108426--208108663 Score: 251
Period size: 40 Copynumber: 6.2 Consensus size: 39
208108416 TCTTCGGAAT
** *
208108426 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAA-CACTCGCACAAATGCCTTCGGGTC
* * * *
208108465 TTAACCCGGATTTGGTA-ACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT--AACACTCGCACAAATGCCTTCGGGTC
208108505 TTAGCCCGGATATAACAACT--CACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTCGCACAAATGCCTTCGGGTC
* *
208108543 TTAGCCCGG-T-TTA-ACTCGAACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACACTCGCACAAATGCCTTCGGGTC
*
208108579 TTAGCCCGGATATAACACTCGCACGAATGCCTTC-GGTC
1 TTAGCCCGGATATAACACTCGCACAAATGCCTTCGGGTC
* * * *
208108617 -TAGCCCGGATATATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACACTCGCACAAATGCCTTCGGGTC
208108655 TTAGCCCGG
1 TTAGCCCGG
208108664 TATCATTCAA
Statistics
Matches: 168, Mismatches: 19, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
34 3 0.02
36 28 0.17
37 31 0.18
38 37 0.22
39 27 0.16
40 41 0.24
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTCGCACAAATGCCTTCGGGTC
Found at i:208116595 original size:27 final size:28
Alignment explanation
Indices: 208116565--208116634 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
208116555 ATAGTGAATC
*
208116565 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
208116592 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
208116620 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
208116635 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:208116706 original size:42 final size:42
Alignment explanation
Indices: 208116642--208116748 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
208116632 GCTGTACAAT
* *
208116642 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
208116684 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
208116726 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
208116749 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:208123827 original size:27 final size:28
Alignment explanation
Indices: 208123797--208123866 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
208123787 ATAGTGAATC
*
208123797 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
208123824 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
208123852 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
208123867 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:208123938 original size:42 final size:42
Alignment explanation
Indices: 208123874--208123980 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
208123864 GCTGTACAAT
* *
208123874 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
208123916 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
208123958 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
208123981 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:208127033 original size:40 final size:39
Alignment explanation
Indices: 208126976--208127160 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
208126966 ATTAAATGAT
* * *
208126976 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
208127016 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
208127056 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
208127096 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
208127136 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
208127161 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:208127112 original size:80 final size:80
Alignment explanation
Indices: 208126975--208127181 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
208126965 AATTAAATGA
* * ** * *
208126975 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
208127040 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
208127053 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
208127118 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
208127135 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
208127182 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:208127166 original size:40 final size:39
Alignment explanation
Indices: 208126974--208127181 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
208126964 CAATTAAATG
* * ** *
208126974 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
208127014 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
208127054 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
208127094 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
208127134 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
208127174 ATATCCGG
1 ATATCCGG
208127182 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:208135009 original size:40 final size:39
Alignment explanation
Indices: 208134952--208135136 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
208134942 ATTAAATGAT
* * *
208134952 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
208134992 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
208135032 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
208135072 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
208135112 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
208135137 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:208135088 original size:80 final size:80
Alignment explanation
Indices: 208134951--208135157 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
208134941 AATTAAATGA
* * ** * *
208134951 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
208135016 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
208135029 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
208135094 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
208135111 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
208135158 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:208135142 original size:40 final size:39
Alignment explanation
Indices: 208134950--208135157 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
208134940 CAATTAAATG
* * ** *
208134950 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
208134990 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
208135030 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
208135070 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
208135110 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
208135150 ATATCCGG
1 ATATCCGG
208135158 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:208139213 original size:40 final size:40
Alignment explanation
Indices: 208139147--208139313 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
208139137 AAATTGAATG
* * *
208139147 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
208139186 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
208139226 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
208139266 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
208139306 ATATCCGG
1 ATATCCGG
208139314 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:208147733 original size:40 final size:40
Alignment explanation
Indices: 208147667--208147817 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
208147657 AAATTGAATG
* *
208147667 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
208147706 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
208147746 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
208147786 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
208147818 ACGTGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:208147831 original size:40 final size:40
Alignment explanation
Indices: 208147704--208147833 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
208147694 ATGCTGGAAA
* * *
208147704 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
208147744 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
208147784 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
208147824 TTATATCCGG
1 TTATATCCGG
208147834 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:208147832 original size:80 final size:79
Alignment explanation
Indices: 208147667--208147833 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
208147657 AAATTGAATG
*
208147667 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
208147732 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * * *
208147746 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
208147809 CATTTGTGC-ACGTGGTT
63 CAATTGTGCTA-GTGGCT
208147826 ATATCCGG
1 ATATCCGG
208147834 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 18 0.24
80 57 0.76
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:208155583 original size:40 final size:38
Alignment explanation
Indices: 208155527--208155687 Score: 162
Period size: 38 Copynumber: 4.2 Consensus size: 38
208155517 GAATCCAGTC
* * * *
208155527 ACCAGCACAAAACCTGCTAGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGAGA-TTTAA-CCCAGATATAAT
* * * *
208155567 ACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGAGATTTAACCCAGATATAAT
*
208155605 ACCAGCACGAAGCCTGC-AGGATTTAACCCAGATATACT
1 ACCAGCACGAAGCCTGCGA-GATTTAACCCAGATATAAT
* * * *
208155643 ACTAGCATGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGAGATTTAACCCAGATATAAT
*
208155681 TCCAGCA
1 ACCAGCA
208155688 TATAGCCTGC
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
38 79 0.79
39 5 0.05
40 16 0.16
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGAGATTTAACCCAGATATAAT
Found at i:208155609 original size:38 final size:38
Alignment explanation
Indices: 208155559--208155697 Score: 183
Period size: 38 Copynumber: 3.7 Consensus size: 38
208155549 TTTAAGCTCA
*
208155559 GATATAATACCAGCACTAGGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
* * *
208155597 GATATAATACCAGCACGAAGCCTGCAGGATTTAACCCA
1 GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
* *
208155635 GATATACTACTAGCA-TGAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACT-AAGCCTGCGGGATTTAACCCG
*
208155673 GATATAATTCCAGCA-TATAGCCTGC
1 GATATAATACCAGCACTA-AGCCTGC
208155698 AGGTCTTTAA
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 86 0.99
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (38 bp):
GATATAATACCAGCACTAAGCCTGCGGGATTTAACCCG
Found at i:208158491 original size:40 final size:39
Alignment explanation
Indices: 208158446--208158652 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
208158436 CGGAATACAA
*
208158446 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
208158486 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
208158526 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
208158566 CCGGATGT-GTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
208158605 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
208158645 CCGGATAT
1 CCGGATAT
208158653 CATTCAATTG
Statistics
Matches: 141, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
38 4 0.03
39 28 0.20
40 106 0.75
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:208158635 original size:79 final size:80
Alignment explanation
Indices: 208158446--208158651 Score: 222
Period size: 79 Copynumber: 2.6 Consensus size: 80
208158436 CGGAATACAA
* * *
208158446 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAAT
*
208158510 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * * **
208158526 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTGTC-ACTAGCAC-AAT
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AACGACTAGCACAAAT
*
208158588 GGCCTTCGGGTCTTAAC
65 -GCCTTCGGGTATTAAC
** * * *
208158605 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
208158652 TCATTCAATT
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 3 0.03
79 60 0.57
80 43 0.41
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:208162937 original size:20 final size:20
Alignment explanation
Indices: 208162912--208162952 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
208162902 ATCGTTTATT
208162912 AAGCTGACGATAGTCGATGC
1 AAGCTGACGATAGTCGATGC
208162932 AAGCTGACGATAGTCGATGC
1 AAGCTGACGATAGTCGATGC
208162952 A
1 A
208162953 CAACCTCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.20, G:0.29, T:0.20
Consensus pattern (20 bp):
AAGCTGACGATAGTCGATGC
Found at i:208166599 original size:80 final size:80
Alignment explanation
Indices: 208166459--208166628 Score: 218
Period size: 80 Copynumber: 2.1 Consensus size: 80
208166449 CGGAATACAA
* * *
208166459 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCGGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
208166523 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * * **
208166539 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
208166603 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
208166619 CCGGATATAA
1 CCGGATATAA
208166629 TTACTAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
79 3 0.04
80 72 0.94
81 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:208166635 original size:40 final size:40
Alignment explanation
Indices: 208166459--208166665 Score: 188
Period size: 40 Copynumber: 5.2 Consensus size: 40
208166449 CGGAATACAA
*
208166459 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTA-GCACGAATGCCTTCGGGTCTTAGC
* * * * * *
208166499 CGGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
* *
208166539 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
* ** *
208166579 CCGGATGTGGTC-ACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATAT-AACAACTAGCACGAAT-GCCTTCGGGTCTTAGC
** ** * *
208166619 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAG-
1 CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
208166658 CCGGATAT
1 CCGGATAT
208166666 CATTCAATTG
Statistics
Matches: 137, Mismatches: 25, Indels: 11
0.79 0.14 0.06
Matches are distributed among these distances:
39 11 0.08
40 122 0.89
41 4 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:208168828 original size:40 final size:40
Alignment explanation
Indices: 208168783--208168949 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
208168773 CGGAATATAA
208168783 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
208168823 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
208168863 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
208168903 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
208168942 CCGGATAT
1 CCGGATAT
208168950 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:208168933 original size:80 final size:79
Alignment explanation
Indices: 208168783--208168949 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
208168773 CGGAATATAA
* *
208168783 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
208168848 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
208168863 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
208168925 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
208168942 CCGGATAT
1 CCGGATAT
208168950 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:208169794 original size:17 final size:19
Alignment explanation
Indices: 208169771--208169816 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
208169761 AAGAAGCATG
208169771 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
208169789 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
208169807 AATCATGCTC
1 AATCATGCTC
208169817 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:208176832 original size:40 final size:40
Alignment explanation
Indices: 208176787--208176953 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
208176777 CGGAATATAA
208176787 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
208176827 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
208176867 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
208176907 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
208176946 CCGGATAT
1 CCGGATAT
208176954 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:208176937 original size:80 final size:79
Alignment explanation
Indices: 208176787--208176953 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
208176777 CGGAATATAA
* *
208176787 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
208176852 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
208176867 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
208176929 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
208176946 CCGGATAT
1 CCGGATAT
208176954 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:208177801 original size:17 final size:19
Alignment explanation
Indices: 208177778--208177823 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
208177768 AAGAAGCATG
208177778 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
208177796 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
208177814 AATCATGCTC
1 AATCATGCTC
208177824 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:208180486 original size:47 final size:47
Alignment explanation
Indices: 208180388--208180515 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 47
208180378 AATTGATAAG
* * * *
208180388 TACCTATACCCTAGCCCGTAGCCAAATCAAGGTAACTTATCCGAGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCGAGAA
* * ***
208180435 TACCTATACCATGGCCCGTAGCCAAATTAAGGTAACTCCTCTTTGAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCGAGAA
**
208180482 TACCTATACCATGGCCCACAGCCAAATCAAGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
208180516 TTTTCACACC
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.23
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCGAGAA
Found at i:208183884 original size:10 final size:10
Alignment explanation
Indices: 208183869--208183900 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
208183859 AGCCGAATAG
208183869 AAGAAAGAAA
1 AAGAAAGAAA
208183879 AAGAAAGAAA
1 AAGAAAGAAA
*
208183889 AAAAAAGAAA
1 AAGAAAGAAA
208183899 AA
1 AA
208183901 AAGCTCTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:208183888 original size:14 final size:14
Alignment explanation
Indices: 208183869--208183903 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
208183859 AGCCGAATAG
208183869 AAGAAAGAAAAAGA
1 AAGAAAGAAAAAGA
*
208183883 AAGAAAAAAAAAGA
1 AAGAAAGAAAAAGA
*
208183897 AAAAAAG
1 AAGAAAG
208183904 CTCTCATGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAGAAAGAAAAAGA
Found at i:208185228 original size:39 final size:40
Alignment explanation
Indices: 208185133--208185334 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
208185123 TCGAATGATG
* *
208185133 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
208185173 T-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
208185211 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
208185251 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
208185291 ACC-GGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
208185330 TCCGG
1 TCCGG
208185335 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 14, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
38 3 0.02
39 89 0.64
40 47 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:208185271 original size:79 final size:80
Alignment explanation
Indices: 208185133--208185313 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
208185123 TCGAATGATG
* *
208185133 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCGGACTAAGATCCGAAGGCATTT
208185197 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
208185211 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAAT-CGGACTAAGAT-CCGAAGGCA
208185273 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGTTACTATA
* *
208185291 ACC-GGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
208185314 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
78 25 0.28
79 63 0.71
80 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:208185322 original size:79 final size:78
Alignment explanation
Indices: 208185185--208185348 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 78
208185175 GGACTAAGAT
* **
208185185 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTA-CTA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAG-TAGCTA
*
208185249 AATCCGGGTTAAGTC
65 AATCC-GGTTAAATC
* *
208185264 CCGAAGGCATTTGTGCGAGTTACT-ATAACC-GGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTAGCT
* *
208185327 ATATCCGGTTAAATT
64 AAATCCGGTTAAATC
208185342 CCGAAGG
1 CCGAAGG
208185349 TACGTGATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
78 24 0.32
79 50 0.68
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTAGCTAA
ATCCGGTTAAATC
Found at i:208190163 original size:71 final size:71
Alignment explanation
Indices: 208190079--208190242 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
208190069 CGATTTGTCT
208190079 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
208190144 CTTTCA
66 CTTTCA
208190150 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
208190215 CTTTCA
66 CTTTCA
208190221 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
208190243 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:208190280 original size:71 final size:70
Alignment explanation
Indices: 208190079--208190276 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
208190069 CGATTTGTCT
* * * *
208190079 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
208190144 CTTTCA
65 CTTTCA
* * * *
208190150 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
208190215 CTTTCA
65 CTTTCA
* *
208190221 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
208190277 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:208192335 original size:21 final size:23
Alignment explanation
Indices: 208192295--208192336 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
208192285 TAAGCATATC
208192295 TTCGAGTACCTGGATACTTTCTT
1 TTCGAGTACCTGGATACTTTCTT
208192318 TTCGA-TACCTGGAT-CTTTC
1 TTCGAGTACCTGGATACTTTC
208192337 GTTTGACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 5 0.26
22 9 0.47
23 5 0.26
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.43
Consensus pattern (23 bp):
TTCGAGTACCTGGATACTTTCTT
Found at i:208200045 original size:28 final size:28
Alignment explanation
Indices: 208199976--208200076 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
208199966 GACAAGATTG
* * * *
208199976 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
208200006 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
208200034 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
208200063 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
208200077 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:208208004 original size:28 final size:28
Alignment explanation
Indices: 208207935--208208035 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
208207925 GACAAGATTG
* * * *
208207935 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
208207965 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
208207993 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
208208022 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
208208036 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:208223590 original size:29 final size:29
Alignment explanation
Indices: 208223528--208223609 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
208223518 GTGACGAGAT
208223528 TGGCACTAAGTGTGCATGCT-GAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
208223556 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
208223585 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
208223610 AAAATACGGC
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 20 0.38
29 33 0.62
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:208223630 original size:31 final size:29
Alignment explanation
Indices: 208223529--208223622 Score: 127
Period size: 29 Copynumber: 3.2 Consensus size: 29
208223519 TGACGAGATT
* *
208223529 GGCACTAAGTGTGCATGCT-GAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
* *
208223557 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
208223586 GGCACTAAGTGTGCATGCTGGAAAAAAATAC
1 GGCACTAAGTGTGCATGCTGG--AAAAATAC
208223617 GGCACT
1 GGCACT
208223623 GGGTGTGCGA
Statistics
Matches: 61, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
28 19 0.31
29 30 0.49
31 12 0.20
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAC
Found at i:208223650 original size:60 final size:57
Alignment explanation
Indices: 208223524--208223659 Score: 141
Period size: 60 Copynumber: 2.4 Consensus size: 57
208223514 TACGGTGACG
* * *
208223524 AGAT-TGGCACTAAGTGTGCATGCTGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
208223580 ATATATGGCACTAAGTGTGCATGCTGGAAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCT-G--AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
208223640 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
208223660 GGGCTTAAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
56 3 0.05
57 20 0.31
58 1 0.02
60 40 0.62
61 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (57 bp):
AGATATGGCACTAAGTGTGCATGCTGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:208230207 original size:79 final size:81
Alignment explanation
Indices: 208230106--208230290 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
208230096 ACGACTCGCT
** * *
208230106 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
208230169 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
208230186 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
208230250 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
208230266 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
208230291 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:208230290 original size:40 final size:39
Alignment explanation
Indices: 208230099--208230290 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
208230089 GGATATAACG
* ** * *
208230099 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
208230139 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
208230179 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
208230218 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
208230258 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
208230291 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:208238241 original size:79 final size:81
Alignment explanation
Indices: 208238140--208238324 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
208238130 ACGACTCGCT
** * *
208238140 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
208238203 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
208238220 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
208238284 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
208238300 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
208238325 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:208238324 original size:40 final size:39
Alignment explanation
Indices: 208238133--208238324 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
208238123 GGATATAACG
* ** * *
208238133 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
208238173 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
208238213 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
208238252 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
208238292 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
208238325 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:208245109 original size:39 final size:39
Alignment explanation
Indices: 208245013--208245235 Score: 283
Period size: 39 Copynumber: 5.7 Consensus size: 39
208245003 TCGAATGATG
* *
208245013 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
208245053 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
208245092 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
208245131 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
208245170 CTCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
208245211 ACCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
208245236 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 84 0.52
40 68 0.42
41 9 0.06
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:208245227 original size:118 final size:119
Alignment explanation
Indices: 208245013--208245235 Score: 303
Period size: 118 Copynumber: 1.9 Consensus size: 119
208245003 TCGAATGATG
* *
208245013 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTCACTATATCCGGACTAAGATCCGAAGGCATTT
* *
208245078 GTGCGAGTTACTAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
66 GTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* **
208245132 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTA-ACTCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTCACTATA-TCCGGACTAAGAT-CCGAAGGCA
*
208245193 TTTGTGCGAGTTACTATAACCGGGCTATGT-CCGAAGGCATTTG
63 TTTGTGCGAGTTACTA-AACCGGGCTAAGTCCCGAAGGCATTTG
208245236 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
117 2 0.02
118 63 0.68
119 27 0.29
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTCACTATATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:208245242 original size:79 final size:78
Alignment explanation
Indices: 208245013--208245235 Score: 315
Period size: 79 Copynumber: 2.8 Consensus size: 78
208245003 TCGAATGATG
* * * *
208245013 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCGAAGGCATT
*
208245077 TGTGCGAGTTACTAA
64 TGTGCGAGTCACTAA
* *
208245092 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAGCCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCGAAGGCATTT
208245156 GTGCGAGTCACTAA
65 GTGCGAGTCACTAA
* *
208245170 CTCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCGAAGGCATTT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTT
208245235 G
65 G
208245236 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
78 25 0.19
79 96 0.74
80 8 0.06
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGTCACTAA
Found at i:208253437 original size:40 final size:40
Alignment explanation
Indices: 208253354--208253577 Score: 226
Period size: 40 Copynumber: 5.7 Consensus size: 40
208253344 TCGAATGATG
* * * *
208253354 TCCGGCCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
208253394 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
208253434 TCC-GAGTTAAGTCCCGAAGGCATTTGTGCGA-TTACTAAT
1 TCCGGA-CTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
208253473 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
**
208253512 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * * *
208253553 -CTGGGCTATGTCCCAAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
208253578 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
38 18 0.12
39 31 0.20
40 97 0.62
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:208259090 original size:24 final size:24
Alignment explanation
Indices: 208259049--208259185 Score: 228
Period size: 24 Copynumber: 5.9 Consensus size: 24
208259039 NNNNNNNNNN
208259049 ACTGGGGCA-AAGCCCTTTTGATA
1 ACTGGGGCATAAGCCCTTTTGATA
208259072 ACTGGGGCATAAGCCCTTTTGATA
1 ACTGGGGCATAAGCCCTTTTGATA
208259096 ACTGGGGCATAAGCCCTTTTGATA
1 ACTGGGGCATAAGCCCTTTTGATA
*
208259120 ACTGAGGCATAAGCCCTTTTGATA
1 ACTGGGGCATAAGCCCTTTTGATA
*
208259144 ACT-GGGCATAAGCCC-TTTAATA
1 ACTGGGGCATAAGCCCTTTTGATA
208259166 A-TGGGGCATAAGCCCTTTTG
1 ACTGGGGCATAAGCCCTTTTG
208259186 CACTTCCTCC
Statistics
Matches: 107, Mismatches: 4, Indels: 6
0.91 0.03 0.05
Matches are distributed among these distances:
21 1 0.01
22 19 0.18
23 23 0.21
24 64 0.60
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (24 bp):
ACTGGGGCATAAGCCCTTTTGATA
Found at i:208259258 original size:20 final size:20
Alignment explanation
Indices: 208259230--208259270 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
208259220 GCATTTATGA
*
208259230 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
208259250 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
208259270 A
1 A
208259271 TGTAACACCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:208260029 original size:30 final size:31
Alignment explanation
Indices: 208259973--208260035 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
208259963 CCTTTTCATA
208259973 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
208260004 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
208260034 TT
1 TT
208260036 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 13 0.42
31 18 0.58
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:208260367 original size:47 final size:47
Alignment explanation
Indices: 208260226--208260367 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
208260216 GCTTTATCAT
* * *
208260226 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
208260275 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
208260322 ATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
208260368 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
47 60 0.69
48 15 0.17
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:208260368 original size:24 final size:24
Alignment explanation
Indices: 208260226--208260367 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
208260216 GCTTTATCAT
*
208260226 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
208260251 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
208260275 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
208260298 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
208260322 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
208260346 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
208260368 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
23 39 0.35
24 59 0.54
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:208260462 original size:19 final size:20
Alignment explanation
Indices: 208260418--208260476 Score: 102
Period size: 19 Copynumber: 3.0 Consensus size: 20
208260408 TATGATTACC
208260418 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
208260438 TCATGTGCATAGCATACAT-
1 TCATGTGCATATCATACATA
208260457 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
208260477 CCATATTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:208260551 original size:25 final size:25
Alignment explanation
Indices: 208260519--208260566 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
208260509 ATACATAAAC
* * *
208260519 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
208260544 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
208260567 CATTTATAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:208264593 original size:27 final size:27
Alignment explanation
Indices: 208264493--208264576 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
208264483 GGGCATATTC
* *
208264493 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
208264520 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
208264547 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
208264574 GTC
1 GTC
208264577 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:208264693 original size:26 final size:27
Alignment explanation
Indices: 208264638--208264693 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
208264628 GTAAATCAAC
208264638 AAACCAAATGTATTTTAGTAATTTTGT
1 AAACCAAATGTATTTTAGTAATTTTGT
208264665 AAACC-AATGGTATTTCTA-TAATTTT-T
1 AAACCAAAT-GTATTT-TAGTAATTTTGT
208264691 AAA
1 AAA
208264694 AAGTCAAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
26 7 0.26
27 18 0.67
28 2 0.07
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (27 bp):
AAACCAAATGTATTTTAGTAATTTTGT
Found at i:208264741 original size:27 final size:27
Alignment explanation
Indices: 208264728--208264853 Score: 189
Period size: 27 Copynumber: 4.7 Consensus size: 27
208264718 TGTAAATTAG
*
208264728 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAACTAA
* * *
208264755 GGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAA
*
208264782 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAA
*
208264809 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAA
*
208264836 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
208264854 GTAAATCGAG
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAA
Found at i:208264819 original size:81 final size:81
Alignment explanation
Indices: 208264647--208264852 Score: 227
Period size: 81 Copynumber: 2.5 Consensus size: 81
208264637 CAAACCAAAT
* ** * * * *
208264647 GTATTTTAGTAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTAAAAAGTCAAGGGTATTTCT
1 GTATTTTGGTAATTTTACAAACCAAGGGTATTTC-AGTAA-TTTCACAAA-CCAAGGGTATTTCT
** *
208264711 GTAACTTTGTAAATTAGGG
63 GTAACTTTACAAACTAGGG
** *
208264730 GTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT-TGGT
1 GTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTCT-GT
*
208264794 AATTTTACAAACTAGGG
65 AACTTTACAAACTAGGG
*
208264811 GTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTT
1 GTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTT
208264853 TGTAAATCGA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
80 1 0.01
81 64 0.62
82 7 0.07
83 31 0.30
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (81 bp):
GTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTCTGTA
ACTTTACAAACTAGGG
Found at i:208264865 original size:27 final size:27
Alignment explanation
Indices: 208264647--208264921 Score: 160
Period size: 27 Copynumber: 10.1 Consensus size: 27
208264637 CAAACCAAAT
* * *
208264647 GTATTTTAGTAATTTTGTAAACCAATG
1 GTATTTTAGTAATTTTATAAATCAAGG
*
208264674 GTATTTCTA-TAATTTTTAAAAAGTCAAGG
1 GTATTT-TAGTAA-TTTTATAAA-TCAAGG
* * * *
208264703 GTATTTCT-GTAACTTTGTAAATTAGGG
1 GTATTT-TAGTAATTTTATAAATCAAGG
* * *
208264730 GTATTTTGGTAATTTTACAAATTAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
** * * *
208264757 GTATTTCGGTAATTTCACAAACCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
* * *
208264784 GTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTTAGTAATTTTATAAATC-AAGG
* * *
208264811 GTATTTTGGTAATTTTACAAACCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
* *
208264838 GTATTTTAGTAATTTTGTAAATCGAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
**** * *
208264865 GTAAAACAGTAATTCTGTAAATCAAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
**** * *
208264892 GTAAAACAGTAATTCTATAAATCGAGG
1 GTATTTTAGTAATTTTATAAATCAAGG
208264919 GTA
1 GTA
208264922 AAACGGTAAT
Statistics
Matches: 207, Mismatches: 34, Indels: 14
0.81 0.13 0.05
Matches are distributed among these distances:
26 2 0.01
27 174 0.84
28 16 0.08
29 15 0.07
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
GTATTTTAGTAATTTTATAAATCAAGG
Found at i:208264877 original size:81 final size:81
Alignment explanation
Indices: 208264725--208264878 Score: 182
Period size: 81 Copynumber: 1.9 Consensus size: 81
208264715 CTTTGTAAAT
** * ***
208264725 TAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAA
**
208264790 TGGTAATTTTACAAAC
66 CAGTAATTTTACAAAC
* *** * *
208264806 TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAA
208264871 CAGTAATT
66 CAGTAATT
208264879 CTGTAAATCA
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAA
CAGTAATTTTACAAAC
Found at i:208264904 original size:81 final size:81
Alignment explanation
Indices: 208264819--208265048 Score: 205
Period size: 81 Copynumber: 2.8 Consensus size: 81
208264809 GGGTATTTTG
* **** * *
208264819 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
208264884 AATCAAGGGTAAAACA
66 AATCAAGGGTAAAACA
* * * * *
208264900 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
* *
208264965 AGTCGAGGGTAAAAC-
66 AATCAAGGGTAAAACA
** * * * * * *
208264980 GATAA-TCATGTAAATCAGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCT
1 G-TAATTC-TACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGA-GGGTAAAACAGTAATTCT
*
208265043 GTAAAT
63 ATAAAT
208265049 TGGGGGTACT
Statistics
Matches: 125, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
80 4 0.03
81 121 0.97
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.29
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
AATCAAGGGTAAAACA
Found at i:208265056 original size:27 final size:27
Alignment explanation
Indices: 208264846--208265048 Score: 268
Period size: 27 Copynumber: 7.5 Consensus size: 27
208264836 GGGTATTTTA
* *
208264846 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
208264873 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
208264900 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
208264927 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
208264954 GTAATTCTATAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
208264981 ATAA-TCATGTAAATC-AGGGGTAAAACG
1 GTAATTC-TGTAAATCGA-GGGTAAAACG
* *
208265008 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
208265035 GTAATTCTGTAAAT
1 GTAATTCTGTAAAT
208265049 TGGGGGTACT
Statistics
Matches: 158, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.02
27 154 0.97
28 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:208265083 original size:27 final size:27
Alignment explanation
Indices: 208265053--208265114 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
208265043 GTAAATTGGG
* *
208265053 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAAATTTACAAATCGAA
*
208265080 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAAATTTACAAATCGAA
208265107 GGTATTTC
1 GGTATTTC
208265115 AGTATTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 3 0.10
27 28 0.90
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (27 bp):
GGTATTTCGGTAAATTTACAAATCGAA
Found at i:208267228 original size:538 final size:539
Alignment explanation
Indices: 208266147--208277081 Score: 19629
Period size: 538 Copynumber: 20.5 Consensus size: 539
208266137 GGGTGTTACA
* * * *
208266147 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTAATGATGGAGGTATAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
* * *
208266212 ATGTTATAAATTTTTGTATTTTGATGTTTAA-GGATAGATTTTGCATGTTTATGGTTAGAGAAAC
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGG-TAGATTATGCATGTTTATGGTTGGAGAAAC
* * *
208266276 AACTTTTGCTAAGTTATTTTCAATGAAAATGCTAAAAAGGACTAATTTATAAAAGTTATAAAATA
130 AACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATT
* *
208266341 TGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTCGG
195 TTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGG
208266406 CTTAAAGTGAAAATAAATTGAATGAAAATTA-TTTACAAGCCTAGGGTAAAAGTGTAAATATGAT
260 CTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGAT
*
208266470 AAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTCTAAA
325 AAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGA-AAAATTTAGTAATTAAATGTTTAAA
* *
208266535 TAAACAAAATAAAAGCAAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCA
389 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
208266600 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
454 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
208266665 ATTTTCACG-TTTTGAAATCC
519 ATTTTCACGTTTTTGAAATCC
* * *
208266685 TTGTAACATGATCTACCTATTTCTACCACTTATTTGAGTTATGATGAAGGTTTAGGGTCTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
*
208266750 ATGTTATAAATTTTTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
*
208266815 ACTTTTGCTAAGTGATTTTCAATG-AAATGCTAAAAAGGACTAATTTGTAAAACTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208266879 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
*
208266944 TTAAACTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
* *
208267009 AAATTTAAGGGC-AAAATGTAATTTTTTCCATGGTATGAAAAATTTAGTAATTAAATGTTTAAAT
326 AAATTTAGGGGCAAAAATGTAA-TTTTTCCATAGTATGAAAAATTTAGTAATTAAATGTTTAAAT
* **
208267073 AAACGAAATAAAAG-CAAGATTTTGGTCATCTTCAACCTTTCGGCCGAAATTTTGAAGACCACCA
390 AAACAAAATAAAAGCCAA-ATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
* *
208267137 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCTGTTCTTGCCCCGTTTTCAATG
454 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
*
208267202 ATTTTCACATTTTTGAAATCC
519 ATTTTCACGTTTTTGAAATCC
* * **
208267223 TTGTAACATGATCTACCTATTTCTACTATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAAAT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
* *
208267288 ATGTTGTAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTAGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
* * *
208267353 AGTTTTGCTAAGTGATTTTCAATGAAAATGGTAAAAATGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
* *
208267418 GTCATAAAAGTGTGATTTAGTGGAAATTGTGGG--TTTATAGTTATGAAAGTGGTTCTGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
* *
208267481 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTAAAAGCCTAGGGGCAAAAGTGTAAA-ATGAT
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTA-GGGTAAAAGTGTAAATATGAT
* *
208267545 AAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATTAAATTTAGTAGTTAAATGTTTAA
325 AAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGA-AAAATTTAGTAATTAAATGTTTAA
* *
208267610 ATAAACAAAATAAAAGCAAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACC
388 ATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACC
208267675 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
453 ATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAAT
*
208267740 GATTTTTACGTTTTTGAAATCC
518 GATTTTCACGTTTTTGAAATCC
*
208267762 TTGTAACATGATCTACCTATTTC-ACCATTTATTTGAGTTATGATGAAGGTTTAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
*
208267826 ATGTTATAAATTTGTGTATTTTGATGTTTAATAGTAGATTATGCATGTTTATGGTTGG-GAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208267890 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
*
208267955 TTCATAAAAGTGTGATTTTGTGG-AATTGTGGGTTTTTATAGTTATGAAAGTGGTTC-GCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
*
208268018 TTAAAGTGAAAATAAATTGAATGAAAATTA-TTTACAAACCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
* *
208268082 AAATTTAGGGGCAAAAATTTAGTTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTA-ATTTTTCCATAGTATGA-AAAATTTAGTAATTAAATGTTTAAA
* *
208268147 TAAACAAAATAAAAGCCAAATTTTGTTCCTCTTCAA-CCCTCGGCCGAAATTTTGAAGACCACCA
389 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
**
208268211 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTATGTTCTTGCCCCGTTTTTAATG
454 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
208268276 ATTTTCACGTTTTTGAAATCC
519 ATTTTCACGTTTTTGAAATCC
* *
208268297 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208268362 ATGTTATAAATTTG-GTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208268426 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208268491 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
208268556 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAG-CTAGGGTAAAAGTGTAAATATG-T-
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
* *
208268618 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAGTTTAGTAATTAAATGTTTAAAT
326 AAATTTAGGGGCAAAAATGTAA-TTTTTCCATAGTATGAAAAATTTAGTAATTAAATGTTTAAAT
208268683 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAA-TTTG-AGACCACCAT
390 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
208268746 GGCTAGGG-TTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
455 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
208268810 TTTTCACGTTTTTGAAATCC
520 TTTTCACGTTTTTGAAATCC
*
208268830 TTGTAACATGATCTACCTATTTCTACCA-TTATTTGAGTTATGATGAAGGTTTAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
*
208268894 ATGTTATAAATTTGTGTATTTTGATGTTTAATAGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208268959 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA-TT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208269023 TTCATAAAAGTGTGATTTAGTGG-AATTGTGGGTTTTTATAGTTATGAAAGTGGTTC-GCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
*
208269086 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAACCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
208269151 AAATTTA-GGGCAAAAAT-TAATTTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAA
326 AAATTTAGGGGCAAAAATGTAA-TTTTTCCATAGTATGA-AAAATTTAGTAATTAAATGTTTAAA
208269214 TAAACAAAATAAAAGCCAAATTTT-GTCATCTTCAA-CCCTCGGCCGAAATTTTGAAGACCACCA
389 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
**
208269277 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTATGTTCTTGCCCCGTTTTTAATG
454 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
208269342 ATTTTCACGTTTTTGAAATCC
519 ATTTTCACGTTTTTGAAATCC
* *
208269363 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208269428 ATGTTATAAATTTG-GTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208269492 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA-TT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208269556 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
208269621 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTA-AAG-CTAGGGTAAAAGTGTAAATATGAT-
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
*
208269683 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAATTTAGTAATTAAATGTTTAAAT
326 AAATTTAGGGGCAAAAATGTAA-TTTTTCCATAGTATGAAAAATTTAGTAATTAAATGTTTAAAT
208269748 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA-CCCTCGGCCGAAA-TTTGAAGACCACCAT
390 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
208269811 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
455 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
208269876 TTTTCACGTTTTTGAAATCC
520 TTTTCACGTTTTTGAAATCC
208269896 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208269960 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208270025 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208270090 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
208270155 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
208270220 AAATTTAGGGGCAAAAAT-TAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAAT
326 AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGA-AAAATTTAGTAATTAAATGTTTAAAT
208270284 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
390 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
**
208270349 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTATGTTCTTGCCCCGTTTTTAATGA
455 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
208270414 TTTTCACGTTTTTGAAATCC
520 TTTTCACGTTTTTGAAATCC
*
208270434 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATG-AGGTCTAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208270498 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208270563 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208270628 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
208270693 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
*
208270758 AAATTTAGGGGCAAAAATGTAATTTTTTCCATAGTATGATAAATTTAGTAATTAAATGTTTAAAT
326 AAATTTAGGGGCAAAAATGTAA-TTTTTCCATAGTATGAAAAATTTAGTAATTAAATGTTTAAAT
208270823 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
390 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
208270888 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
455 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
208270953 TTTTCACGTTTTTGAAATCC
520 TTTTCACGTTTTTGAAATCC
208270973 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208271037 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208271102 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA-TT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208271166 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
208271231 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
208271296 AAATTTAGGGGCAAAAAT-TAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAAT
326 AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGA-AAAATTTAGTAATTAAATGTTTAAAT
208271360 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
390 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
*
208271425 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-TGTTCTTGCCCCGTTTTTAATGA
455 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
208271489 TTTTCACGTTTTTGAAATCC
520 TTTTCACGTTTTTGAAATCC
208271509 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208271574 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208271639 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA-TT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208271703 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
208271768 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGAT-
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
208271832 AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAAT
326 AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGA-AAAATTTAGTAATTAAATGTTTAAAT
208271897 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
390 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
208271962 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
455 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
208272027 TTTTCACGTTTTTGAAATCC
520 TTTTCACGTTTTTGAAATCC
208272047 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208272112 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208272177 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA-TT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208272241 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
208272306 TTAAA-TGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
208272370 AAATTTAGGGGCAAAAAT-TAATTTTTCC------------A--TAGT-ATTAAATGTTTAAATA
326 AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGAAAAATTTAGTAATTAAATGTTTAAATA
208272419 AACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATG
391 AACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATG
208272484 GCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGAT
456 GCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGAT
208272549 TTTCACGTTTTTGAAATCC
521 TTTCACGTTTTTGAAATCC
*
208272568 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATG-AGGTCTAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208272632 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208272697 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208272762 TGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGG
196 T-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGG
208272827 CTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGAT
260 CTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGAT
*
208272892 AAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAATTTAGTAATTAAATGTTTAAA
325 AAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGAAAAATTTAGTAATTAAATGTTTAAA
*
208272957 TAAACAAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCA
389 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
208273021 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
454 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
208273086 ATTTTCACGTTTTTGAAATCC
519 ATTTTCACGTTTTTGAAATCC
208273107 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208273171 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208273236 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208273301 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
208273366 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
208273431 AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATAAAATTTAGTAATTAAATGTTTAAAT
326 AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGA-AAAATTTAGTAATTAAATGTTTAAAT
208273496 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
390 AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCAT
208273561 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
455 GGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGA
208273626 TTTTCACGTTTTTGAAATCC
520 TTTTCACGTTTTTGAAATCC
208273646 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208273710 ATGTTATAAATTT-TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208273774 ACTTTTGCTAAGTGATTTTCAATG-AAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208273838 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
208273903 TTAAA-TGAAAA-AAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
208273966 AAATTTAGGGGCAAAAAT-TAATTTTTCC------------A--TAGT-ATTAAATGTTTAAATA
326 AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGAAAAATTTAGTAATTAAATGTTTAAATA
* * * *
208274015 AACAAAATAAAGGCCAAATTTTGTTCCTCTTCAACCCCTCGGCCAAAATTTTGAAGACCACCATG
391 AACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATG
**
208274080 GCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTATGTTCTTGCCCCGTTTTTAATGAT
456 GCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGAT
208274145 TTTCACGTTTTTGAAATCC
521 TTTCACGTTTTTGAAATCC
* *
208274164 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208274229 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208274294 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTAT-AAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208274358 TGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGG
196 T-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGG
*
208274423 CTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCTTAGGGTAAAAGTGTAAATATGAT
260 CTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGAT
*
208274488 AAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTAT-ATAAATTTAGTAATTAAATGTTTAAA
325 AAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGAAAAATTTAGTAATTAAATGTTTAAA
*
208274552 TAAACAAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCA
389 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
208274616 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
454 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
208274681 ATTTTCACG-TTTTGAAATCC
519 ATTTTCACGTTTTTGAAATCC
208274701 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208274765 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208274830 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA-TT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208274894 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
208274959 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGAT-
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
*
208275023 AAATTTAGGGGCAAAAAT-TAATTTTTCCATAGTAT-ATAAATTTAGTAATTAAATGTTTAAATA
326 AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGAAAAATTTAGTAATTAAATGTTTAAATA
208275086 AACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATG
391 AACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATG
208275151 GCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGAT
456 GCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGAT
208275216 TTTCACGTTTTTGAAATCC
521 TTTCACGTTTTTGAAATCC
208275235 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGT-TAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208275299 ATGTTATAAATTT-TGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGA-AAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208275362 ACTTTTGCTAAGTGATTTTCAATG-AAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAA-TT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208275425 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
*
208275490 TT-AATTGAAAA-AAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
208275553 AAATTTAGGGGCAAAAAT-TAATTTTTCCATAGTATGAAAAATTTAGTAATTAAATGTTTAAATA
326 AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGAAAAATTTAGTAATTAAATGTTTAAATA
208275617 AACAAAATAAAAGCCAAATTTT-GTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATG
391 AACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATG
**
208275681 GCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTATGTTCTTGCCCCGTTTTTAATGAT
456 GCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGAT
208275746 TTTCACGTTTTTGAAATCC
521 TTTCACGTTTTTGAAATCC
*
208275765 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATG-AGGTCTAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208275829 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
208275894 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208275959 TGTCATAAAAGTGTGATTTAGTGGAAATTGTGGG-TTTTATAGTTATGAAAGTGGTTCGGCTAGG
196 T-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGG
208276023 CTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAG-CTAGGGTAAAAGTGTAAATATGAT
260 CTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGAT
*
208276087 AAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAAATTTAGTAATTAAATGTTTAAA
325 AAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGAAAAATTTAGTAATTAAATGTTTAAA
*
208276152 TAAACAAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTGAAGACCACCA
389 TAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCA
208276216 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
454 TGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATG
208276281 ATTTTCACGTTTTTGAAATCC
519 ATTTTCACGTTTTTGAAATCC
*
208276302 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTTTAGGGTTTGAACC
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
208276367 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
*
208276432 ACTTTTGCTAAGTGATTTTCAATAAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
208276497 TTCATAAAAGTGTGATTTAGTGGAAA-TGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
196 TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
* *
208276561 TTAAATTGAAAATAAATT-AATGAAAATTA-TTTACAAGCCTAGGGTTAAAGTGTAAATATGATA
261 TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
* *
208276624 AAATTTAGGGGCAAAAATTTAATTTTTCCATAGTATGATAAATTTAGTAATTAAATGTTTAAATA
326 AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGAAAAATTTAGTAATTAAATGTTTAAATA
208276689 AACAAAAT---------A--------A-----AA-------GCC-AAATTTTGAAGACCACCATG
391 AACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATG
**
208276724 GCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTATGTTCTTGCCCCGTTTTTAATGAT
456 GCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGAT
*
208276789 TTTCACATTTTTGAAATCC
521 TTTCACGTTTTTGAAATCC
* *
208276808 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGGAGGTCTAGGGTTTGAACT
1 TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
*
208276873 ATGTTATAAATTAGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
66 ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
* *
208276938 ACTTTTGCTAAGCGATTTTCAATGAAAATGCAAAAAAGGACTAATTTGTAAAAGTTAT-AAATTT
131 ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
* * *
208277002 TGTTATAAAAGTGTGATTTAGTGGAAATTCTGGGTTTTTATACTTATGAAAGTGGTTCGGCTAGG
196 T-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGG
208277067 CTTAAAGTGAAAATA
260 CTTAAAGTGAAAATA
208277082 TGTAACACCC
Statistics
Matches: 10094, Mismatches: 184, Indels: 269
0.96 0.02 0.03
Matches are distributed among these distances:
505 7 0.00
506 306 0.03
507 52 0.01
514 2 0.00
518 209 0.02
519 30 0.00
520 226 0.02
521 317 0.03
522 79 0.01
523 146 0.01
524 17 0.00
525 4 0.00
527 1 0.00
529 55 0.01
530 296 0.03
531 290 0.03
532 289 0.03
533 1012 0.10
534 398 0.04
535 645 0.06
536 777 0.08
537 1685 0.17
538 2006 0.20
539 1190 0.12
540 55 0.01
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.37
Consensus pattern (539 bp):
TTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACC
ATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACA
ACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTT
TTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAGTTATGAAAGTGGTTCGGCTAGGC
TTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCTAGGGTAAAAGTGTAAATATGATA
AAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGAAAAATTTAGTAATTAAATGTTTAAATA
AACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGACCACCATG
GCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCCGTTTTTAATGAT
TTTCACGTTTTTGAAATCC
Found at i:208278599 original size:40 final size:40
Alignment explanation
Indices: 208278540--208278708 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
208278530 CGGGACTTTA
* * *
208278540 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
208278580 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
208278620 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
208278660 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
208278700 CCCGGATAT
1 CCCGGATAT
208278709 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:208286632 original size:40 final size:40
Alignment explanation
Indices: 208286573--208286741 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
208286563 CGGGACTTTA
* * *
208286573 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
208286613 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
208286653 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
208286693 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
208286733 CCCGGATAT
1 CCCGGATAT
208286742 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:208291183 original size:38 final size:40
Alignment explanation
Indices: 208291080--208291255 Score: 213
Period size: 38 Copynumber: 4.5 Consensus size: 40
208291070 TCGAATGATG
* * *
208291080 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
208291120 TCCGGACTAAGAT-CCGAAGGCATTTGT-CGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
208291159 TCCGGACTAAGT-CCGAAGGCATTTGTG-GAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
208291197 TCCGG-GTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
208291237 -CCGGGCTATGTCCCGAAGG
1 TCCGGACTAAGTCCCGAAGG
208291256 TTTGAACGAG
Statistics
Matches: 122, Mismatches: 7, Indels: 14
0.85 0.05 0.10
Matches are distributed among these distances:
37 5 0.04
38 46 0.38
39 32 0.26
40 33 0.27
41 6 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:208291277 original size:77 final size:75
Alignment explanation
Indices: 208291114--208291266 Score: 168
Period size: 77 Copynumber: 2.0 Consensus size: 75
208291104 GTGCTAAGTG
* *
208291114 ACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTCGAGTTACTAAATCCGGACTAAGTCCGAAGG
1 ACTAAATCCGG-GTAAG-TCCCGAAGGCATTTGTCGAGCTACTAAATCCGGACTAAGTCCGAAGG
**
208291178 CATTTGTGGAGTT
64 -ATTTGACGAGTT
* *
208291191 ACTAAATCCGGGTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGTAAGTCCCGAAGGCATTTGT-CGAGCTACTA-AATCCGGACTAAGT-CCGAAG
208291255 G-TTTGAACGAGT
63 GATTTG-ACGAGT
208291267 AGCTATATCC
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
75 1 0.02
76 22 0.34
77 33 0.51
78 9 0.14
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (75 bp):
ACTAAATCCGGGTAAGTCCCGAAGGCATTTGTCGAGCTACTAAATCCGGACTAAGTCCGAAGGAT
TTGACGAGTT
Found at i:208299176 original size:40 final size:40
Alignment explanation
Indices: 208299119--208299298 Score: 165
Period size: 40 Copynumber: 4.5 Consensus size: 40
208299109 TCGAATGATG
* *
208299119 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGTCCCGAAGGACTTTGTGC-AAGTTACTAAA
*
208299159 TCCGGACTAAGAT-CCGAAGGAATTTGTG-AGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGACTTTGTGCA-AGTTACTAAA
*
208299199 TCCGGACTAAGAT-CCGAAGG-CATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGAC-TTTGTGCAAGTTACTAAA
** * * *
208299239 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGACTTTGTGCAAGTTACTA-AA
* *
208299280 -CCGGGCTATGTCCCGAAGG
1 TCCGGACTAAGTCCCGAAGG
208299299 TATTTGAATG
Statistics
Matches: 122, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
39 2 0.02
40 110 0.90
41 10 0.08
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGACTTTGTGCAAGTTACTAAA
Found at i:208299304 original size:80 final size:80
Alignment explanation
Indices: 208299119--208299304 Score: 200
Period size: 80 Copynumber: 2.3 Consensus size: 80
208299109 TCGAATGATG
*
208299119 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGAATTT
1 TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGAATTT
*
208299184 GTGAGAGTTACTAAA
66 GTGAGAGCTACTAAA
* * * ** **
208299199 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCC
1 TCCGGGCTAAG-TCCCGAAGG-ATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGAA
*
208299261 TTTGTGCGAGCTACTATAA
63 TTTGTGAGAGCTACTA-AA
*
208299280 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGG-ATTTG
208299305 AATGAGTAGC
Statistics
Matches: 88, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
79 2 0.02
80 76 0.86
81 10 0.11
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGAATTT
GTGAGAGCTACTAAA
Found at i:208302865 original size:13 final size:13
Alignment explanation
Indices: 208302847--208302872 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
208302837 AATTTTGAAA
208302847 CATGTCACACGTC
1 CATGTCACACGTC
208302860 CATGTCACACGTC
1 CATGTCACACGTC
208302873 ACTAAGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.15, T:0.23
Consensus pattern (13 bp):
CATGTCACACGTC
Found at i:208304152 original size:43 final size:43
Alignment explanation
Indices: 208304099--208304278 Score: 211
Period size: 43 Copynumber: 4.2 Consensus size: 43
208304089 ATGCCACTAT
*
208304099 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
* * * *
208304142 AGAACATGACCTTTAGTGGCG-TTTTCCCCATAAACACCGTTAA
1 AGAACATGACCTTTAGCGGCGCTTTT-CCCACAAACGCCGCTAA
* * * *
208304185 AGAACATGACCTTTAGCGGTGCTTTCCCCATAAACGCTGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
* **
208304228 AGAACATTACCTTTAGCAACGC-TTTCCCAACAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTTCCC-ACAAACGCCGCTAA
*
208304271 AGACCATG
1 AGAACATG
208304279 TCAAATTCAA
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
42 9 0.08
43 102 0.89
44 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAA
Found at i:208305151 original size:2 final size:2
Alignment explanation
Indices: 208305144--208305172 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
208305134 GTTAACAATA
208305144 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
208305173 ATTATCTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:208315491 original size:40 final size:40
Alignment explanation
Indices: 208315383--208315492 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
208315373 ATTGAATGAT
* * * * *
208315383 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
208315423 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
208315463 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
208315493 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:208315507 original size:40 final size:39
Alignment explanation
Indices: 208315383--208315532 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
208315373 ATTGAATGAT
* * * * * * *
208315383 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
208315423 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
208315463 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
208315503 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
208315533 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:208318532 original size:47 final size:47
Alignment explanation
Indices: 208318454--208318753 Score: 286
Period size: 47 Copynumber: 6.3 Consensus size: 47
208318444 GGGTACATGT
*
208318454 GAGCTAGTGTAAGACCATGTCTGGGAAATGGCATCAGCCTTAATATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTTAATATGA
*
208318502 GAGCTAGTGTAAGA-CATGTCTGGGACATGGCATC-CACTTAAACATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGC-CTT-AATATGA
* * *
208318549 GAGCTAGTGT-AGGCCATGTCTGGGACATGGCATCGGCCTCAATATGT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTTAATATGA
* * * * * **
208318596 GAAGCCAGTGTAAGATCATGTTTGGAACATGGCATCGACATTGTTATGA
1 G-AGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-CCTTAATATGA
* *
208318645 GAACTAGTGTAAGACCA-GTCTGGGACATGGCATCGGCCTCAATAT-A
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTTAATATGA
* * * * * ** *
208318691 TGAGCCAGTGTAAGACCATGTTTGGAACATGGAATCGACTTTGTTACGA
1 -GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-CCTTAATATGA
208318740 GAGCTAGTGTAAGA
1 GAGCTAGTGTAAGA
208318754 NNNNNNNNNN
Statistics
Matches: 203, Mismatches: 36, Indels: 26
0.77 0.14 0.10
Matches are distributed among these distances:
45 1 0.00
46 6 0.03
47 97 0.48
48 70 0.34
49 29 0.14
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCTTAATATGA
Found at i:208318747 original size:95 final size:95
Alignment explanation
Indices: 208318454--208318753 Score: 390
Period size: 95 Copynumber: 3.1 Consensus size: 95
208318444 GGGTACATGT
* * * *
208318454 GAGCTAGTGTAAGACCATGTCTGGGAAATGGCATCAGCCTTAATATGA-GAGCTAGTGTAAGACA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATAT-ATGAGCCAGTGTAAGACA
* * * ****
208318518 TGTCTGGGACATGGCATCCACTTAAACATGA
65 TGTTTGGAACATGGCATCGACTTTGTTATGA
* *
208318549 GAGCTAGTGT-AGGCCATGTCTGGGACATGGCATCGGCCTCAATATGTGAAGCCAGTGTAAGATC
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATATG-AGCCAGTGTAAGA-C
*
208318613 ATGTTTGGAACATGGCATCGACATTGTTATGA
64 ATGTTTGGAACATGGCATCGACTTTGTTATGA
*
208318645 GAACTAGTGTAAGACCA-GTCTGGGACATGGCATCGGCCTCAATATATGAGCCAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATATGAGCCAGTGTAAGA-CA
* *
208318709 TGTTTGGAACATGGAATCGACTTTGTTACGA
65 TGTTTGGAACATGGCATCGACTTTGTTATGA
208318740 GAGCTAGTGTAAGA
1 GAGCTAGTGTAAGA
208318754 NNNNNNNNNN
Statistics
Matches: 179, Mismatches: 22, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
94 32 0.18
95 78 0.44
96 64 0.36
97 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (95 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATATGAGCCAGTGTAAGACAT
GTTTGGAACATGGCATCGACTTTGTTATGA
Found at i:208318749 original size:143 final size:142
Alignment explanation
Indices: 208318454--208318753 Score: 302
Period size: 143 Copynumber: 2.1 Consensus size: 142
208318444 GGGTACATGT
* *
208318454 GAGCTAGTGTAAGACCATGTCTGGGAAATGGCATCAGCCTTAATATGAGAGCTAGTGTAAGACAT
1 GAGCTAGTGTAAGACCATGTCTGGGAAATGGCATCAGCATTAATATGAGAACTAGTGTAAGACAT
* * * * *
208318519 GTCTGGGACATGGCATCCACTTAAACATGAGAGCTAGTGTAGGCCATGTCTGGGACATGGCATCG
66 GTCTGGGACATGGCATCCACCTAAACATGAGAGCCAGTGTAGACCATGTCTGGAACATGGAATCG
* * *
208318584 GCCTCAATATGT
131 ACCTCAATACGA
* * * **
208318596 GAAGCCAGTGTAAGATCATGT-TTGGAACATGGCATC-GACATTGTTATGAGAACTAGTGTAAGA
1 G-AGCTAGTGTAAGACCATGTCTGGGAA-ATGGCATCAG-CATTAATATGAGAACTAGTGTAAGA
** * * *
208318659 CCA-GTCTGGGACATGGCATCGGCCTCAATAT-ATGAGCCAGTGTAAGACCATGTTTGGAACATG
63 -CATGTCTGGGACATGGCATCCACCTAAACATGA-GAGCCAGTGT-AGACCATGTCTGGAACATG
* ***
208318722 GAATCGACTTTGTTACGA
125 GAATCGACCTCAATACGA
208318740 GAGCTAGTGTAAGA
1 GAGCTAGTGTAAGA
208318754 NNNNNNNNNN
Statistics
Matches: 127, Mismatches: 25, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
142 8 0.06
143 90 0.71
144 29 0.23
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (142 bp):
GAGCTAGTGTAAGACCATGTCTGGGAAATGGCATCAGCATTAATATGAGAACTAGTGTAAGACAT
GTCTGGGACATGGCATCCACCTAAACATGAGAGCCAGTGTAGACCATGTCTGGAACATGGAATCG
ACCTCAATACGA
Found at i:208321546 original size:45 final size:44
Alignment explanation
Indices: 208321389--208321562 Score: 206
Period size: 45 Copynumber: 3.8 Consensus size: 44
208321379 GTTTGGGCAT
208321389 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * * *
208321434 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
208321482 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
208321527 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
208321563 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.34
46 32 0.29
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (44 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:208324531 original size:29 final size:30
Alignment explanation
Indices: 208324484--208324558 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
208324474 GTATCGTATC
* * *
208324484 TTGGGTTTCTTTATCCT-GG-ATCTCTTTA
1 TTGGATTTCTTTATTCTGGGTATCTCTATA
* *
208324512 TTCTGATTTCTTTATTCTGGGTTTCTCTATA
1 TT-GGATTTCTTTATTCTGGGTATCTCTATA
208324543 TTGGATTTCTTTATTC
1 TTGGATTTCTTTATTC
208324559 GGTTTTCTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
28 2 0.05
29 12 0.32
30 15 0.39
31 9 0.24
ACGTcount: A:0.12, C:0.16, G:0.15, T:0.57
Consensus pattern (30 bp):
TTGGATTTCTTTATTCTGGGTATCTCTATA
Found at i:208324567 original size:14 final size:14
Alignment explanation
Indices: 208324489--208324567 Score: 70
Period size: 15 Copynumber: 5.4 Consensus size: 14
208324479 GTATCTTGGG
*
208324489 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* *
208324504 TCTCTTTATTCTGA
1 TTTCTTTATTCGGA
*
208324518 TTTCTTTATTCTGGG
1 TTTCTTTATTC-GGA
208324533 TTTCTCTATATT-GGA
1 TTTCT-T-TATTCGGA
*
208324548 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
208324562 TTTCTT
1 TTTCTT
208324568 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
13 4 0.08
14 21 0.40
15 22 0.42
16 1 0.02
17 4 0.08
ACGTcount: A:0.11, C:0.16, G:0.13, T:0.59
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:208326980 original size:46 final size:45
Alignment explanation
Indices: 208326930--208327104 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 45
208326920 TGTTTGGGCA
208326930 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
208326976 TCCGAACTCGTTGAGTTGAGTCCGAGTTTAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GA-T-GCGAAG
*
208327022 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
208327068 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
208327105 GCGGTTACAT
Statistics
Matches: 109, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 99 0.91
47 1 0.01
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:208327083 original size:92 final size:92
Alignment explanation
Indices: 208326926--208327095 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
208326916 AGGATGTTTG
* *
208326926 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
208326991 TTGAGTCCGAGTTTAGAGATGTAACTA
66 TTGAGTCCGAGTTTAGAGATGTAACTA
* *
208327018 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
208327083 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
208327096 CACTTATGGG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTTAGAGATGTAACTA
Found at i:208329987 original size:124 final size:124
Alignment explanation
Indices: 208329765--208329989 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
208329755 GAATTATGTG
* * * * * * *
208329765 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
208329830 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
208329889 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
208329954 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
208329990 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:208330111 original size:40 final size:40
Alignment explanation
Indices: 208329984--208330113 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
208329974 TTGCTGGAAA
* * *
208329984 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
208330024 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
208330064 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
208330104 TTATATCCGG
1 TTATATCCGG
208330114 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:208338094 original size:124 final size:124
Alignment explanation
Indices: 208337872--208338096 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
208337862 GAATTATGTG
* * * * * * *
208337872 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
208337937 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
208337996 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
208338061 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
208338097 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:208338218 original size:40 final size:40
Alignment explanation
Indices: 208338091--208338220 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
208338081 TTGCTGGAAA
* * *
208338091 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
208338131 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
208338171 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
208338211 TTATATCCGG
1 TTATATCCGG
208338221 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:208350810 original size:28 final size:28
Alignment explanation
Indices: 208350778--208350879 Score: 134
Period size: 28 Copynumber: 3.5 Consensus size: 28
208350768 ATAGTGAATC
208350778 CGCACACTTAGTGCTATATATTTCAGCT
1 CGCACACTTAGTGCTATATATTTCAGCT
208350806 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-A-TTTCAGCT
* * *
208350836 GCGCACACTTAGTTCTATATA-ATCAAACT
1 -CGCACACTTAGTGCTATATATTTC-AGCT
208350865 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
208350880 GTACATTTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
28 35 0.53
29 4 0.06
30 9 0.14
31 18 0.27
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATATTTCAGCT
Found at i:208358312 original size:30 final size:30
Alignment explanation
Indices: 208358257--208358387 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
208358247 ATAGTGAATC
*
208358257 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
208358286 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
208358316 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
208358344 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
208358374 CGCACACTTAGTGC
1 CGCACACTTAGTGC
208358388 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:208358367 original size:58 final size:58
Alignment explanation
Indices: 208358256--208358387 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
208358246 TATAGTGAAT
* * * * *
208358256 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
208358315 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
208358373 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
208358388 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:208365813 original size:30 final size:30
Alignment explanation
Indices: 208365758--208365888 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
208365748 ATAGTGAATC
*
208365758 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
208365787 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
208365817 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
208365845 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
208365875 CGCACACTTAGTGC
1 CGCACACTTAGTGC
208365889 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:208365868 original size:58 final size:58
Alignment explanation
Indices: 208365757--208365888 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
208365747 TATAGTGAAT
* * * * *
208365757 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
208365816 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
208365874 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
208365889 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:208372066 original size:16 final size:16
Alignment explanation
Indices: 208372045--208372077 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
208372035 AAATTTTCCC
208372045 TAGACTCATATATCCA
1 TAGACTCATATATCCA
208372061 TAGACTCATATATCCA
1 TAGACTCATATATCCA
208372077 T
1 T
208372078 CCCTGGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (16 bp):
TAGACTCATATATCCA
Found at i:208373324 original size:30 final size:30
Alignment explanation
Indices: 208373269--208373399 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
208373259 ATAGTGAATC
*
208373269 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
208373298 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
208373328 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
208373356 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
208373386 CGCACACTTAGTGC
1 CGCACACTTAGTGC
208373400 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:208373379 original size:58 final size:58
Alignment explanation
Indices: 208373268--208373399 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
208373258 TATAGTGAAT
* * * * *
208373268 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
208373327 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
208373385 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
208373400 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:208382937 original size:39 final size:40
Alignment explanation
Indices: 208382880--208383034 Score: 179
Period size: 39 Copynumber: 3.9 Consensus size: 40
208382870 TGTTCAAACA
* * * * *
208382880 CCTTCGGGACATAGCCCGGTTAT-GTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
208382919 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* * *
208382959 CCTTCGGGAGTTTATCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGA-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
208383000 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACA
208383035 TTCATACACA
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 42 0.43
40 21 0.21
41 35 0.36
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:208382992 original size:41 final size:41
Alignment explanation
Indices: 208382909--208383034 Score: 168
Period size: 41 Copynumber: 3.1 Consensus size: 41
208382899 TTATGTAACC
*
208382909 CGCACAAATGCCTTCGGGA-CTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGAGCTTAACCCGGATATCACAACT
* * * *
208382949 CGCACAATTGCCTTCGGGAGTTTATCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGAGCTTAACCCGGATATCACAACT
* *
208382990 CGCACAATTGCCTTC-GG-GCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGAGCTTAACCCGGATATCACAACT
208383029 CGCACA
1 CGCACA
208383035 TTCATACACA
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
39 23 0.31
40 20 0.27
41 32 0.43
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (41 bp):
CGCACAATTGCCTTCGGGAGCTTAACCCGGATATCACAACT
Found at i:208385991 original size:29 final size:29
Alignment explanation
Indices: 208385934--208386048 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
208385924 TACCTATATT
* *
208385934 TGGCCCATTAAGCCC-AATCATATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* *
208385962 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
208385991 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * * *
208386020 TGGACCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
208386048 T
1 T
208386049 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
28 26 0.34
29 50 0.66
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:208385995 original size:57 final size:58
Alignment explanation
Indices: 208385925--208386035 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
208385915 AATTTCACAT
* * *
208385925 ACCTATATTTGGCCCATTAAGCCC-AATCATATTTATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTTATATGGACCATTAGGCCCAAATC
* * *
208385982 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGACCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTTATATGGACCATTAGGCCCA
208386036 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAAATCACATTTATATGGACCATTAGGCCCAAATC
Found at i:208386280 original size:16 final size:16
Alignment explanation
Indices: 208386259--208386301 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
208386249 ATAGCCAAAC
208386259 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
**
208386275 TTTCAGCTTTTCGGTA
1 TTTCAGCTTTTCGACA
*
208386291 TTTCGGCTTTT
1 TTTCAGCTTTT
208386302 GCCGATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.21, G:0.16, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:208386866 original size:19 final size:21
Alignment explanation
Indices: 208386825--208386872 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
208386815 TAAGTGAAAC
208386825 AAAGAAAATTGTGTAGAGAAGA
1 AAAG-AAATTGTGTAGAGAAGA
*
208386847 ATAGAAATTG-GTAG-GAAGA
1 AAAGAAATTGTGTAGAGAAGA
208386866 AAAGAAA
1 AAAGAAA
208386873 GAAAAACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.46
20 4 0.17
21 6 0.25
22 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.27, T:0.17
Consensus pattern (21 bp):
AAAGAAATTGTGTAGAGAAGA
Found at i:208392046 original size:47 final size:47
Alignment explanation
Indices: 208391939--208392054 Score: 128
Period size: 47 Copynumber: 2.5 Consensus size: 47
208391929 TTTGTGTGCT
* *
208391939 AGTGTAAGACATGTCTGGGAC-ATGCATCGGCCACATTATGAAACCC
1 AGTGTAAGACATGTCTGGGACAAGGCATCGGCCACATAATGAAACCC
* * * * *
208391985 AATGTAAGACCATGTCTGGGACAAGGCATCTGCCTCCA-AATGTAAGCC
1 AGTGTAAGA-CATGTCTGGGACAAGGCATCGGCC-ACATAATGAAACCC
*
208392033 AGTGTAAGACATGTCTAGGACA
1 AGTGTAAGACATGTCTGGGACA
208392055 TGCATCGACT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
46 8 0.14
47 24 0.41
48 24 0.41
49 2 0.03
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACAAGGCATCGGCCACATAATGAAACCC
Found at i:208392117 original size:44 final size:44
Alignment explanation
Indices: 208392035--208392119 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 44
208392025 TGTAAGCCAG
208392035 TGTAAGACATGTCTAGGACATGCATCGACTACGAGATATGTCAA
1 TGTAAGACATGTCTAGGACATGCATCGACTACGAGATATGTCAA
* *
208392079 TGTAAGACCATGTCTGGGACATGGCATCGGC-ACG-GATATGT
1 TGTAAGA-CATGTCTAGGACAT-GCATCGACTACGAGATATGT
208392120 GAGAGCTAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
44 14 0.38
45 16 0.43
46 7 0.19
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (44 bp):
TGTAAGACATGTCTAGGACATGCATCGACTACGAGATATGTCAA
Found at i:208392138 original size:50 final size:48
Alignment explanation
Indices: 208392082--208392205 Score: 142
Period size: 48 Copynumber: 2.5 Consensus size: 48
208392072 ATGTCAATGT
* *
208392082 AAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGAGCTAGTGC
1 AAGACCATGTCTGAGACATGGCATCGGC-CTCGAT-TGTGAGAG-TAGTGC
* * * * * *
208392132 AAGACCACGTCTGAGACATGGCTTGGGCCTCGATTTTGATAGTAGTGT
1 AAGACCATGTCTGAGACATGGCATCGGCCTCGATTGTGAGAGTAGTGC
208392180 AAGACCATGTCTGAGACATGGCATCG
1 AAGACCATGTCTGAGACATGGCATCG
208392206 ACTTGATAGA
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 28 0.45
49 7 0.11
50 27 0.44
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (48 bp):
AAGACCATGTCTGAGACATGGCATCGGCCTCGATTGTGAGAGTAGTGC
Found at i:208392192 original size:48 final size:50
Alignment explanation
Indices: 208392079--208392205 Score: 152
Period size: 50 Copynumber: 2.6 Consensus size: 50
208392069 GATATGTCAA
* *
208392079 TGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGCTAG
1 TGTAAGACCATGTCTGAGACATGGCATCGGCACCGATATGTGAGAGCTAG
* * * * * *
208392129 TGCAAGACCACGTCTGAGACATGGCTTGGGC-CTCGAT-TTTGATAG-TAG
1 TGTAAGACCATGTCTGAGACATGGCATCGGCAC-CGATATGTGAGAGCTAG
208392177 TGTAAGACCATGTCTGAGACATGGCATCG
1 TGTAAGACCATGTCTGAGACATGGCATCG
208392206 ACTTGATAGA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
48 28 0.44
49 7 0.11
50 29 0.45
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (50 bp):
TGTAAGACCATGTCTGAGACATGGCATCGGCACCGATATGTGAGAGCTAG
Found at i:208395840 original size:42 final size:42
Alignment explanation
Indices: 208395794--208395947 Score: 127
Period size: 42 Copynumber: 3.7 Consensus size: 42
208395784 ATGAGTTTAC
* * **
208395794 GTGTAAGACCATATCTGGGATATGGCATC-CTAATGAGGTTTT
1 GTGTAAGACCATATCTGGGACATGGCATCGAT-ATGAGAATTT
* *
208395836 GTGTAGGACCATGTCTGGGACATGGCATCGATATGAGAATTT
1 GTGTAAGACCATATCTGGGACATGGCATCGATATGAGAATTT
* * **
208395878 -TGTAAGACCATAGCT-GCACTATTGGCATCGATATGAG-ATCCC
1 GTGTAAGACCATATCTGGGAC-A-TGGCATCGATATGAGAAT-TT
* * *
208395920 ATGTAAAACCATATCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGACATGGCAT
208395948 TGGTATGATT
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
40 3 0.03
41 15 0.17
42 55 0.61
43 15 0.17
44 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGACATGGCATCGATATGAGAATTT
Found at i:208396207 original size:10 final size:10
Alignment explanation
Indices: 208396183--208396212 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
208396173 TAATTTACAT
208396183 TATGTTATGTG
1 TATGTTAT-TG
208396194 TATGTTATTG
1 TATGTTATTG
208396204 TATGTTATT
1 TATGTTATT
208396213 ATTTACATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (10 bp):
TATGTTATTG
Found at i:208402690 original size:39 final size:39
Alignment explanation
Indices: 208402606--208402727 Score: 174
Period size: 39 Copynumber: 3.2 Consensus size: 39
208402596 TATGGTAACC
* * *
208402606 CGCACAAATGCCTTCGGACTTAACCC-GATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
208402644 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
208402683 CGTACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
208402722 CGCACA
1 CGCACA
208402728 TTCATTCACA
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
38 23 0.32
39 50 0.68
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:208412579 original size:38 final size:37
Alignment explanation
Indices: 208412528--208412599 Score: 126
Period size: 38 Copynumber: 1.9 Consensus size: 37
208412518 TAGTGGCTAC
208412528 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGACATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACATTCT
*
208412566 ATCCGGGCTAAGACCCGAAGGCATTTGTGCACAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCACAT
208412600 GGTTATATCC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
37 4 0.12
38 29 0.88
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (37 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCACATTCT
Found at i:208420490 original size:40 final size:40
Alignment explanation
Indices: 208420424--208420574 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
208420414 AAATTGAATG
* * *
208420424 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
208420463 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
208420503 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
208420543 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
208420575 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:208420588 original size:40 final size:40
Alignment explanation
Indices: 208420461--208420590 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
208420451 ATGCTGGAAA
* * * *
208420461 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
208420501 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
208420541 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
208420581 TTATATCCGG
1 TTATATCCGG
208420591 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:208430807 original size:27 final size:28
Alignment explanation
Indices: 208430750--208430819 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
208430740 AAATTTGTAC
**
208430750 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
208430778 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
208430805 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
208430820 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Done.