Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 663 of 770
Found at i:208430828 original size:27 final size:27
Alignment explanation
Indices: 208430750--208430831 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
208430740 AAATTTGTAC
* *
208430750 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
208430778 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
208430805 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
208430832 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:208438722 original size:27 final size:28
Alignment explanation
Indices: 208438665--208438734 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
208438655 AAATTTGTAC
**
208438665 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
208438693 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
208438720 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
208438735 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:208438743 original size:27 final size:27
Alignment explanation
Indices: 208438665--208438746 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
208438655 AAATTTGTAC
* *
208438665 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
208438693 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
208438720 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
208438747 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:208443860 original size:29 final size:29
Alignment explanation
Indices: 208443828--208443963 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
208443818 ATACCCTTCG
** * *
208443828 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
208443857 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
208443886 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
208443915 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
208443944 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
208443964 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:208443955 original size:58 final size:58
Alignment explanation
Indices: 208443803--208443962 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
208443793 AATTTAAGCC
* *** * * ** * *
208443803 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
208443861 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
208443919 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
208443963 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:208444795 original size:143 final size:141
Alignment explanation
Indices: 208444605--208444899 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
208444595 AAATTCTATA
208444605 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
208444670 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
208444735 GAAGACAACAT
131 GAAAACAACAT
208444746 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
208444811 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
208444876 AGGAAAACAACAT
129 AGGAAAACAACAT
208444889 GCATGGCCGAA
1 GCATGGCCGAA
208444900 ATTTAACTCA
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 132 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:208452828 original size:29 final size:29
Alignment explanation
Indices: 208452796--208452931 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
208452786 ATACCCTTCG
** * *
208452796 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
208452825 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
208452854 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
208452883 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
208452912 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
208452932 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:208452923 original size:58 final size:58
Alignment explanation
Indices: 208452771--208452930 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
208452761 AATTTAAGCC
* *** * * ** * *
208452771 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
208452829 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
208452887 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
208452931 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:208453765 original size:143 final size:141
Alignment explanation
Indices: 208453575--208453869 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
208453565 AAATTCTATA
208453575 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
208453640 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
208453705 GAAGACAACAT
131 GAAAACAACAT
208453716 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
208453781 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
208453846 AGGAAAACAACAT
129 AGGAAAACAACAT
208453859 GCATGGCCGAA
1 GCATGGCCGAA
208453870 ATTTAACTCA
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 132 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:208460781 original size:29 final size:29
Alignment explanation
Indices: 208460749--208460884 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
208460739 ATACCCTTCG
** * *
208460749 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
208460778 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
208460807 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
208460836 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
208460865 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
208460885 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:208460876 original size:58 final size:58
Alignment explanation
Indices: 208460724--208460883 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
208460714 AATTTAAGCC
* *** * * ** * *
208460724 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
208460782 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
208460840 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
208460884 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:208461718 original size:143 final size:141
Alignment explanation
Indices: 208461528--208461822 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
208461518 AAATTCTATA
208461528 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
208461593 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
208461658 GAAGACAACAT
131 GAAAACAACAT
208461669 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
208461734 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
208461799 AGGAAAACAACAT
129 AGGAAAACAACAT
208461812 GCATGGCCGAA
1 GCATGGCCGAA
208461823 ATTTAACTCA
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 132 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:208468742 original size:29 final size:29
Alignment explanation
Indices: 208468710--208468845 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
208468700 ATACCCTTCG
** * *
208468710 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
208468739 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
208468768 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
208468797 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
208468826 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
208468846 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 93 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:208468837 original size:58 final size:58
Alignment explanation
Indices: 208468685--208468844 Score: 176
Period size: 58 Copynumber: 2.8 Consensus size: 58
208468675 AATTTAAGCC
* *** * * ** * *
208468685 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * *
208468743 TGCACACATAGTGTCATATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
208468801 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
208468845 AATCTCGTCA
Statistics
Matches: 83, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 83 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:208469677 original size:143 final size:141
Alignment explanation
Indices: 208469487--208469781 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
208469477 AAATTCTATA
208469487 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
208469552 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
208469617 GAAGACAACAT
131 GAAAACAACAT
208469628 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
208469693 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
208469758 AGGAAAACAACAT
129 AGGAAAACAACAT
208469771 GCATGGCCGAA
1 GCATGGCCGAA
208469782 ATTTAACTCA
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 132 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:208473330 original size:40 final size:40
Alignment explanation
Indices: 208473243--208473429 Score: 259
Period size: 40 Copynumber: 4.7 Consensus size: 40
208473233 TTGATTGATA
* * *
208473243 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
* *
208473282 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
*
208473322 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
* ** *
208473362 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
* *
208473402 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
208473430 TTGTGGCTAT
Statistics
Matches: 134, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 27 0.20
40 107 0.80
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTATTATAT
Found at i:208481499 original size:40 final size:40
Alignment explanation
Indices: 208481454--208481654 Score: 233
Period size: 40 Copynumber: 5.0 Consensus size: 40
208481444 GATTGATACT
* * * *
208481454 CGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATC
* *
208481494 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATT
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
*
208481534 CGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
* *** *
208481574 CGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
* * ** *
208481614 CGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
208481654 C
1 C
208481655 TGCTAAATTC
Statistics
Matches: 136, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
40 134 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
Found at i:208486900 original size:11 final size:11
Alignment explanation
Indices: 208486884--208486910 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
208486874 AGGAATCTGT
208486884 AATTTATGGTG
1 AATTTATGGTG
208486895 AATTTATGGTG
1 AATTTATGGTG
208486906 AATTT
1 AATTT
208486911 CCAAAGTCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (11 bp):
AATTTATGGTG
Found at i:208487837 original size:46 final size:46
Alignment explanation
Indices: 208487767--208487941 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
208487757 TGTAACCCGC
*
208487767 CCATAAGTGAACTCGGACTTAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
208487813 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * * *
208487863 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
208487906 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
208487942 ATGCCCAAAT
Statistics
Matches: 111, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
46 63 0.57
47 27 0.24
48 1 0.01
49 1 0.01
50 6 0.05
51 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:208487888 original size:93 final size:93
Alignment explanation
Indices: 208487775--208487946 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
208487765 GCCCATAAGT
* * *
208487775 GAACTCGGACTTAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
208487840 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
208487868 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
208487933 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
208487947 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:208487961 original size:46 final size:44
Alignment explanation
Indices: 208487772--208487961 Score: 127
Period size: 46 Copynumber: 4.1 Consensus size: 44
208487762 CCCGCCCATA
* * ** ** *
208487772 AGTGAACTCGGACTTAACTCAACGAGCTCGGGCGTTCACATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* *
208487817 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
208487867 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
208487910 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
208487957 AGTGA
1 AGTGA
208487962 CATGTCACTT
Statistics
Matches: 114, Mismatches: 15, Indels: 30
0.72 0.09 0.19
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
46 65 0.57
47 28 0.25
48 4 0.04
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:208493960 original size:29 final size:29
Alignment explanation
Indices: 208493910--208494039 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
208493900 CCTCCGAGCT
* * * *
208493910 CGCACAC-CAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * * *
208493938 TGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
208493967 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
208493996 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
208494025 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
208494040 GATCTCGTCA
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 6 0.07
29 84 0.93
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:208493993 original size:58 final size:58
Alignment explanation
Indices: 208493852--208494040 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
208493842 TACTCGATTT
* * * *** *
208493852 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
* * ** * *
208493910 CGCACAC-CAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
208493967 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
208494025 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
208494041 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
55 4 0.04
56 4 0.04
57 31 0.30
58 66 0.63
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:208509465 original size:40 final size:39
Alignment explanation
Indices: 208509421--208509546 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
208509411 GGGACTCAAC
*
208509421 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
208509461 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
208509501 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
208509541 CCGGAT
1 CCGGAT
208509547 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:208509505 original size:80 final size:80
Alignment explanation
Indices: 208509360--208509546 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
208509350 GCTACACATT
* * *
208509360 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
208509424 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
208509440 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
208509503 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
208509521 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
208509547 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:208511800 original size:49 final size:49
Alignment explanation
Indices: 208511744--208511868 Score: 153
Period size: 49 Copynumber: 2.6 Consensus size: 49
208511734 GCACATTAAA
* * * * * *
208511744 GTCGATGCCGTGTCCTAGATAGGTCTTACGCTGACTTTCATATATCGAG-
1 GTCGATGCCATGTCCCAAATAGGTCTTACACCGACTCTCATATATCG-GT
* *
208511793 GTCGATGCCATGTCCCAAATAGGTCTTACACCGGCTCTCATCTATCGGT
1 GTCGATGCCATGTCCCAAATAGGTCTTACACCGACTCTCATATATCGGT
*
208511842 GTCGATGCCATGTCCCAAACAGGTCTT
1 GTCGATGCCATGTCCCAAATAGGTCTT
208511869 GCACTGACAC
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
48 1 0.02
49 65 0.98
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAAATAGGTCTTACACCGACTCTCATATATCGGT
Found at i:208518455 original size:40 final size:39
Alignment explanation
Indices: 208518290--208518473 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
208518280 AAATTGAATG
* * *
208518290 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
208518330 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
208518370 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
208518410 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
208518449 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
208518474 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:208518498 original size:80 final size:81
Alignment explanation
Indices: 208518330--208518518 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
208518320 GCTGGAAATT
* * * *
208518330 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
208518395 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
208518411 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
208518474 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
208518490 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
208518519 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:208522921 original size:49 final size:49
Alignment explanation
Indices: 208522811--208522988 Score: 168
Period size: 49 Copynumber: 3.7 Consensus size: 49
208522801 ATAAAATACA
* * * * *
208522811 GATGCCATGTCCCAAACATGGTCTTACACTGTCTAGCACAT-TAAAGTC-
1 GATGCCATGTCCCAAACA-GGTCTTACACTGACTATCATATATCAAGGCT
* * * *
208522859 AATGCCGTGTCCCAGACAGGTCTTACACTGACTTTCATATATCAAGGCT
1 GATGCCATGTCCCAAACAGGTCTTACACTGACTATCATATATCAAGGCT
* * *
208522908 GATGCCATGTCCCAAACAGGTCTTACACT-AGCTCTCATCTATC--GGTGT
1 GATGCCATGTCCCAAACAGGTCTTACACTGA-CTATCATATATCAAGG-CT
*
208522956 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
1 -GATGCCATGTCCCAAACAGGTCTTACACTGAC
208522989 CCACAACAAG
Statistics
Matches: 108, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
47 20 0.19
48 22 0.20
49 65 0.60
50 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCCAAACAGGTCTTACACTGACTATCATATATCAAGGCT
Found at i:208527748 original size:40 final size:39
Alignment explanation
Indices: 208527621--208527788 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 39
208527611 CGGAATATAA
*
208527621 CCGGATATAATC-ACGT-GCACAAATGCCTTTGGGTCTTAGC
1 CCGGATATAA-CAAC-TAGCAC-AATGCCTTCGGGTCTTAGC
* * *
208527661 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAGC
* * *
208527701 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
*** * * * *
208527741 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
208527781 CCGGATAT
1 CCGGATAT
208527789 CATTCAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 103 0.97
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:208533569 original size:537 final size:539
Alignment explanation
Indices: 208532086--208535806 Score: 7042
Period size: 537 Copynumber: 6.9 Consensus size: 539
208532076 AGATGACCAA
208532086 AAATTTTATCATATCTATGGCAAAAATTAATTTTTGCCCCTAAATTTTAT-ATATTTACACTTTT
1 AAATTTTATCATA-CTATGGCAAAAATTAATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
*
208532150 AGCCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCAC-TTAAGCCTAGCCGAACCACTT
65 A-CCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTT
208532214 TCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTA
129 TCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTA
208532279 CAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAA
194 CAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAA
208532344 ACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACC
259 ACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACC
208532409 TTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGA
324 TTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGA
208532474 AAATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAG
389 AAATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAG
208532539 CCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGT
454 CCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGT
208532604 TTATTTAAACATTTAATTACT
519 TTATTTAAACATTTAATTACT
208532625 AAATTTTATCATACTATGG-AAAAATTAATTTTTGCCCCTAAATTTTATCATATTTACACTTTTA
1 AAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCTAAATTTTATCATATTTACACTTTTA
* *
208532689 CCCTAGGCTTGT--AATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAACCACTTTC
66 CCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTC
* * *
208532752 ATAACTATAAAAACCCACAATTTCCACTAAATCAAAC-TTTATGAAAAATTTTATAACTTTTAAA
131 ATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACA
208532816 AATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAAC
196 AATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAAC
*
208532881 ATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAAACCTT
261 ATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTT
208532946 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
326 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
208533011 ATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGC
391 ATCATTAAAAACGGGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGC
**
208533076 CATGGTGGTCTTCAAAATTTCGGCC-AGGGGTTGAAGATGACCAAAATTTTTCTTTTATTTTGTT
455 CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTT
208533140 TATTTAAACATTTAATTACT
520 TATTTAAACATTTAATTACT
*
208533160 AAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTG
1 AAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCTAAATTTTATCATATTTACACTTTTA
*
208533224 CCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTC
66 CCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTC
208533289 ATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACA
131 ATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACA
208533354 AATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAAC
196 AATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAAC
208533419 ATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACC-T
261 ATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTT
208533483 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
326 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
208533548 ATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCC
391 ATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCC
208533613 ATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTT
456 ATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTT
208533678 ATTTAAACATTTAATTACT
521 ATTTAAACATTTAATTACT
208533697 AAATTTTATCATACTATGG-AAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTA-ATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
208533761 ACCCTAGGC-TTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
65 ACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
208533825 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA-AAATTTTATAACTTTTAC
130 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTAC
208533889 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
195 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
208533954 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
260 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
208534019 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
325 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
208534084 AATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGC
390 AATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGC
208534149 CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT-TTTTGTT
455 CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTT
208534213 TATTTAAACATTTAATTACT
520 TATTTAAACATTTAATTACT
208534233 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTA-ATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
* *
208534297 GCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTT
65 ACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
208534362 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA-AAATTTTATAACTTTTAC
130 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTAC
208534426 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
195 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
208534491 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
260 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
*
208534556 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTC-AAAATGTGAA
325 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
208534620 AATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGC
390 AATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGC
208534685 CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTT
455 CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTT
208534750 TATTTAAACATTTAATTACT
520 TATTTAAACATTTAATTACT
208534770 AAATTTTATCATACTATGGC-AAAATTAATTTTTG-CCCTAAATTTTATCATATTTACACTTTTA
1 AAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCTAAATTTTATCATATTTACACTTTTA
208534833 CCCTAGGC-TTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTC
66 CCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTC
208534897 ATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATGACAAATTTTATAACTTTTACA
131 ATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACA
208534961 AATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAAC
196 AATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAAC
208535026 ATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTT
261 ATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTT
208535091 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
326 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
208535156 ATCATTAAAAACGGGGCAAGAACGGACTTACTAT--AGCTTGGAAAGCTTAAACAAAACCCTAGC
391 ATCATTAAAAACGGGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGC
*
208535219 CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGACGATGACCAAAATTTGGCTTTTATTTTGTT
455 CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTT
208535284 TATTTAAACATTTAATTACT
520 TATTTAAACATTTAATTACT
208535304 AAATTTTATCATACTATGG-AAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTA-ATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
208535368 ACCCTA-GCTTTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAG-CGAACCACTTT
65 ACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
*
208535431 CATAACTATAAAAACCCACAATTTCCACTAAATCACACCTTTATGACAAATTTTATAACTTTTAC
130 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTAC
208535496 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
195 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
208535561 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
260 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
*
208535626 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAATGTGAA
325 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
208535691 AATCATTAAAAACGGGGCAAGAACGAACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAG
390 AATCATTAAAAACGGGGCAAGAACG-ACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAG
208535756 CCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
454 CCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
208535807 TATCATCCTA
Statistics
Matches: 3128, Mismatches: 28, Indels: 53
0.97 0.01 0.02
Matches are distributed among these distances:
533 7 0.00
534 449 0.14
535 484 0.15
536 921 0.29
537 984 0.31
538 270 0.09
539 13 0.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (539 bp):
AAATTTTATCATACTATGGCAAAAATTAATTTTTGCCCCTAAATTTTATCATATTTACACTTTTA
CCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTC
ATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATTTTATAACTTTTACA
AATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAAC
ATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTT
CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
ATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCC
ATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTT
ATTTAAACATTTAATTACT
Found at i:208537724 original size:537 final size:539
Alignment explanation
Indices: 208535801--208540407 Score: 8430
Period size: 535 Copynumber: 8.6 Consensus size: 539
208535791 AAGATGACCA
* * *
208535801 AAATTTTATCATCCTATGGCAAAAATTAAATTTTTGCCCCTAAATTTTATCTTATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
** * *
208535866 AAGCTAGGATTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCGAGCCGAACCACTTT
66 ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
* *
208535931 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGGCAAATTTTATAACTTTTAC
131 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAATTTATAACTTTTAC
*
208535996 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTAACCATAAA
196 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
208536061 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT-GTTCAAACCCTAGACCT
261 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
208536125 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
326 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
208536190 ATCATTAAAAACGGGGCAAGAAC-ACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCC
391 ATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCC
208536254 ATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTT
456 ATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTT
208536319 ATTTAAACATTTAATTACT
521 ATTTAAACATTTAATTACT
208536338 AAATTTTATCATACTATGGCAAAAATTA-ATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
*
208536402 ACCCTAGGCTTGT-AAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGAACCACTTT
66 ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
*
208536466 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA-AAATTTTATAACTTTTAC
131 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAATTTATAACTTTTAC
208536530 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
196 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
208536595 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTA-ACCT
261 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACC-
208536659 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
325 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
208536724 AATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAG
390 AATCATTAAAAACGGGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAG
**
208536789 CCATGGTGGTCTTCAAAATTTCGGCC-AGGGGTTGAAGATGACCAAAATTTTTCTTTTATTTTGT
454 CCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGT
208536853 TTATTTAAACATTTAA-TACT
519 TTATTTAAACATTTAATTACT
208536873 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
* *
208536937 GCCCTAGGCTT-TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTT
66 ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
*
208537001 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA-AAATTTTATAACTTTTAC
131 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAATTTATAACTTTTAC
208537065 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
196 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
208537130 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
261 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
208537195 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
326 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
208537260 ATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCC
391 ATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCC
208537325 ATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTT
456 ATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTT
208537390 ATTTAAACATTTAATTACT
521 ATTTAAACATTTAATTACT
208537409 AAATTTTATCATACTATGG-AAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
*
208537473 ACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
66 ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
208537538 CATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATGACAAAATTTATAACTTTTAC
131 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAATTTATAACTTTTAC
208537602 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
196 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
208537667 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
261 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACC-
*
208537732 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAATGTGAA
325 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
208537797 AATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGC
390 AATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGC
208537862 CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTT
455 CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTT
208537927 TATTTAAACATTTAATTACT
520 TATTTAAACATTTAATTACT
*
208537947 AAATTTTATCATACTATGGCAAAAATTA-ATTTTTGCCCCTAAATTTTATCTTATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
** *
208538011 AAGCTAGGATTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
66 ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
208538076 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAC-AAATTTATAACTTTTAC
131 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAATTTATAACTTTTAC
208538140 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
196 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
*
208538205 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCT
261 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
208538270 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAA--TGAAA
326 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
208538333 ATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCC
391 ATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCC
208538398 ATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTT
456 ATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTT
208538463 ATTTAAACATTTAATTACT
521 ATTTAAACATTTAATTACT
208538482 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
*
208538547 ACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
66 ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
208538612 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAATTTATAACTTTTAC
131 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAATTTATAACTTTTAC
*
208538677 AAATTAGTCCTTTTTAGCATTTTCATTTAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
196 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
* * *
208538742 CATGCATAATCTACCATTAAACATCAAAATACAAAAATTTATAACACGGTTCAAACCCTAAACCT
261 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACC-
208538807 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
325 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
208538872 AATCATTAAAAACGGGGCAAGAACGGACTTACTAT--AGCTTGGAAAGCTTAAACAAAACCCTAG
390 AATCATTAAAAACGGGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAG
208538935 CCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGT
454 CCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGT
208539000 TTATTTAAACATTTAATTACT
519 TTATTTAAACATTTAATTACT
* *
208539021 AAATTTTATCATACTATGG-AAAAATTA-AATTTTGCCCCTAAATTTTATCTTATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
208539084 ACCCTAGG-TTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
66 ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
*
208539148 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATG-CAAATTTTATAACTTTTAC
131 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAATTTATAACTTTTAC
*
208539212 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG-T-TTTCTCTAACCATAAA
196 AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
*
208539275 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTTCAAACCCTAGACCT
261 CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
208539340 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
326 CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
*
208539405 ATCATTAAAAACGGGGCAAGAATCGACTTGCTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGC
391 ATCATTAAAAACGGGGCAAGAA-CGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGC
208539470 CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTT
455 CATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTT
208539535 TATTTAAACATTTAATTACT
520 TATTTAAACATTTAATTACT
* *
208539555 AAATTTTATCATCCTATGGCAAAAATTAAATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
* * *
208539620 ACCCTAGGCTTGTACAATAATTTTCATTAAATTTATTTTCAATTTAAGCCTAGCCGAACCACTTT
66 ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
*
208539685 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA-AAAATTTTATAAGTTTTA
131 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAA-TTTATAACTTTTA
*
208539749 CAAATTAGTCCTTTTTAGTATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAA
195 CAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAA
* *
208539814 ACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAAACT
260 ACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACC
208539879 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
325 TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAA
208539944 AATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAG
390 AATCATTAAAAACGGGGCAAGAAC-GACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAG
* **
208540009 CCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTTTCTTTTATTTTGT
454 CCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGT
208540074 TTATTTAAACATTT-A--ACT
519 TTATTTAAACATTTAATTACT
208540092 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
* * * *
208540156 GCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTT
66 ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
*
208540221 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA-AAAATTTTATAAGTTTTA
131 CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAA-TTTATAACTTTTA
* *
208540285 CAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGCAAAAGTTGTTTCTCCAACCATAT
195 CAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAA
208540350 ACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
260 ACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
208540408 TCTATGCTTC
Statistics
Matches: 3962, Mismatches: 76, Indels: 65
0.97 0.02 0.02
Matches are distributed among these distances:
532 97 0.02
533 76 0.02
534 332 0.08
535 913 0.23
536 713 0.18
537 725 0.18
538 637 0.16
539 152 0.04
540 307 0.08
541 10 0.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (539 bp):
AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
ACCCTAGGCTTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTT
CATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAAATTTATAACTTTTAC
AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAA
CATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCCTAGACCT
CATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAA
ATCATTAAAAACGGGGCAAGAACGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCC
ATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTT
ATTTAAACATTTAATTACT
Found at i:208542158 original size:30 final size:31
Alignment explanation
Indices: 208542124--208542186 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
208542114 CCTTTTCATA
208542124 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
208542154 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
208542185 TT
1 TT
208542187 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:208542457 original size:23 final size:24
Alignment explanation
Indices: 208542378--208542519 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
208542368 GCTTTATCAT
* *
208542378 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
208542403 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
208542427 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
208542450 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
208542474 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
208542497 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
208542520 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 46 0.42
24 51 0.47
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:208542519 original size:47 final size:47
Alignment explanation
Indices: 208542378--208542519 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
208542368 GCTTTATCAT
* * *
208542378 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
208542427 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
208542474 ATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
208542520 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
46 16 0.18
47 50 0.57
48 9 0.10
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:208542595 original size:20 final size:20
Alignment explanation
Indices: 208542570--208542630 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
208542560 TTATGATTAC
208542570 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
208542590 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
208542610 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
208542630 A
1 A
208542631 CCATATTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:208542601 original size:11 final size:11
Alignment explanation
Indices: 208542570--208542625 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
208542560 TTATGATTAC
208542570 ATCATGTGCAT
1 ATCATGTGCAT
*
208542581 ATCA--TACAT
1 ATCATGTGCAT
208542590 ATCATGTGCAT
1 ATCATGTGCAT
*
208542601 ATCA--TACAT
1 ATCATGTGCAT
*
208542610 GTCATGTGCAT
1 ATCATGTGCAT
208542621 ATCAT
1 ATCAT
208542626 ACATACCATA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:208542705 original size:25 final size:25
Alignment explanation
Indices: 208542673--208542720 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
208542663 ATACATAAAC
* * *
208542673 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
208542698 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
208542721 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:208543892 original size:26 final size:28
Alignment explanation
Indices: 208543859--208543928 Score: 73
Period size: 25 Copynumber: 2.8 Consensus size: 28
208543849 TCATACGGAA
*
208543859 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGCATATTACGGTCACTTTAC
*
208543884 CATACAGGG-GTATTACGGTCACTTTAC
1 CATACAGGGCATATTACGGTCACTTTAC
208543911 C-TACAGGGC-T-TTACGGTC
1 CATACAGGGCATATTACGGTC
208543929 TTTTTACCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
25 16 0.41
26 13 0.33
27 10 0.26
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (28 bp):
CATACAGGGCATATTACGGTCACTTTAC
Found at i:208543897 original size:25 final size:26
Alignment explanation
Indices: 208543874--208543949 Score: 82
Period size: 25 Copynumber: 2.9 Consensus size: 26
208543864 GGGCATATTC
*
208543874 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACC-TACAGGGGTATTACG
*
208543901 GTCACTTTACCTACAGGGCT-TTACG
1 GTCACTTTACCTACAGGGGTATTACG
** *
208543926 GTCTTTTTACCTAATAGGGGTATT
1 GTCACTTTACCT-ACAGGGGTATT
208543950 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 15 0.37
26 14 0.34
27 12 0.29
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.37
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGTATTACG
Found at i:208544020 original size:27 final size:27
Alignment explanation
Indices: 208543990--208544246 Score: 140
Period size: 27 Copynumber: 9.4 Consensus size: 27
208543980 GTAAATCTAC
*
208543990 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
208544017 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* * * *
208544045 AAAGTCAAGGGTATTTCTGTAACTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
* * ** *
208544073 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
*** * * *
208544100 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
208544127 AAACCAAGGGTATTT-TGATAATTTTAC
1 AAACCAAGGGTATTTCAG-TAATTTTAT
* * ** *
208544154 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *
208544181 AAACTAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *** * *
208544208 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
*
208544235 AAATCAAGGGTA
1 AAACCAAGGGTA
208544247 AAATAGTAAT
Statistics
Matches: 183, Mismatches: 41, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.01
27 153 0.84
28 15 0.08
29 14 0.08
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.37
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:208544138 original size:54 final size:54
Alignment explanation
Indices: 208544080--208544219 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
208544070 TGTAAATCAG
208544080 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
* * * * *
208544134 GGGTATTTTGATAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCAA
* ** *
208544188 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
208544220 AAACAGTAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 71 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:208544290 original size:26 final size:26
Alignment explanation
Indices: 208544198--208544404 Score: 258
Period size: 27 Copynumber: 7.8 Consensus size: 26
208544188 GGGTATTTTA
*
208544198 GTAATTTTGTAAATCGAGGGTAAAAC
1 GTAATTCTGTAAATCGAGGGTAAAAC
* *
208544224 AGTAATTCTGTAAATCAAGGGTAAAATA
1 -GTAATTCTGTAAATCGAGGGTAAAA-C
* *
208544252 GTAATTCTATAAATCGAGGGTAAAAT
1 GTAATTCTGTAAATCGAGGGTAAAAC
208544278 GTAATTCTGTAAATCGAGGGTAAAAC
1 GTAATTCTGTAAATCGAGGGTAAAAC
*
208544304 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 -GTAATTCTGTAAATCGAGGGTAAAAC
* *
208544331 GATAATTATGTAAATAG-GGGTAAAAC
1 G-TAATTCTGTAAATCGAGGGTAAAAC
*
208544357 GGTAATTATGTAAATCG-GGGTAAAAC
1 -GTAATTCTGTAAATCGAGGGTAAAAC
208544383 GATAATTCTGTAAATCG-GGGTA
1 G-TAATTCTGTAAATCGAGGGTA
208544405 CTTTGGTAAT
Statistics
Matches: 161, Mismatches: 14, Indels: 11
0.87 0.08 0.06
Matches are distributed among these distances:
25 1 0.01
26 76 0.47
27 84 0.52
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.29
Consensus pattern (26 bp):
GTAATTCTGTAAATCGAGGGTAAAAC
Found at i:208544300 original size:80 final size:79
Alignment explanation
Indices: 208544198--208544398 Score: 255
Period size: 80 Copynumber: 2.5 Consensus size: 79
208544188 GGGTATTTTA
* *
208544198 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAG-TAATTCTAT
1 GTAATTATGTAAATCGAGGGTAAAAC-GTAATTCTGTAAATCAAGGGTAAAA-AGATAATTATAT
* *
208544262 AAATCGAGGGTAAAA-T
64 AAATAG-GGGTAAAACG
* * * * *
208544278 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTA
1 GTAATTATGTAAATCGAGGGTAAAAC-GTAATTCTGTAAATCAAGGGTAAAAAGATAATTATATA
208544343 AATAGGGGTAAAACG
65 AATAGGGGTAAAACG
208544358 GTAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATC
1 GTAATTATGTAAATCGAGGGTAAAACG-TAATTCTGTAAATC
208544399 GGGGTACTTT
Statistics
Matches: 107, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 31 0.29
80 75 0.70
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (79 bp):
GTAATTATGTAAATCGAGGGTAAAACGTAATTCTGTAAATCAAGGGTAAAAAGATAATTATATAA
ATAGGGGTAAAACG
Found at i:208544302 original size:53 final size:53
Alignment explanation
Indices: 208544197--208544404 Score: 269
Period size: 53 Copynumber: 3.9 Consensus size: 53
208544187 AGGGTATTTT
* * *
208544197 AGTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATC-GGGGTAAAAC
* *
208544251 AGTAATTCTATAAATCGAGGGTAAAATG-TAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCG-GGGTAAAAC
* * * *
208544304 GGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATAGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGGGGTAAAAC
* *
208544357 GGTAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATCGGGGTA
1 AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGGGGTA
208544405 CTTTGGTAAT
Statistics
Matches: 136, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
52 29 0.21
53 70 0.51
54 37 0.27
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (53 bp):
AGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGGGGTAAAAC
Found at i:208544440 original size:27 final size:26
Alignment explanation
Indices: 208544410--208544499 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
208544400 GGGTACTTTG
208544410 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
208544437 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
208544464 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCA
208544491 GTAATTTTA
1 GTAATTTTA
208544500 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.07
27 48 0.89
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:208544513 original size:27 final size:27
Alignment explanation
Indices: 208544410--208544514 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
208544400 GGGTACTTTG
* *
208544410 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
208544437 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
208544464 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
208544491 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
208544515 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:208547300 original size:30 final size:31
Alignment explanation
Indices: 208547266--208547328 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
208547256 CCTTTTCATA
208547266 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
208547296 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
208547327 TT
1 TT
208547329 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:208547599 original size:23 final size:24
Alignment explanation
Indices: 208547520--208547661 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
208547510 GCTTTATCAT
* *
208547520 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
208547545 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
208547569 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
208547592 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
208547616 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
208547639 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
208547662 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 46 0.42
24 51 0.47
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:208547661 original size:47 final size:47
Alignment explanation
Indices: 208547520--208547661 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
208547510 GCTTTATCAT
* * *
208547520 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
208547569 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
208547616 ATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
208547662 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
46 16 0.18
47 50 0.57
48 9 0.10
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:208547733 original size:20 final size:20
Alignment explanation
Indices: 208547710--208547770 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
208547700 TTATGATTAC
208547710 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
208547730 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
208547750 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
208547770 A
1 A
208547771 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:208547845 original size:25 final size:25
Alignment explanation
Indices: 208547813--208547860 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
208547803 ATACATAAAC
* * *
208547813 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
208547838 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
208547861 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:208549047 original size:27 final size:26
Alignment explanation
Indices: 208549012--208549067 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
208549002 GGGCATATTC
* *
208549012 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCATACAGGGCT-TTACG
*
208549039 GTCACTTTACCCTACAGGGCTTTACG
1 GTCACTTTACCATACAGGGCTTTACG
208549065 GTC
1 GTC
208549068 TTTTTACCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (26 bp):
GTCACTTTACCATACAGGGCTTTACG
Found at i:208549073 original size:26 final size:27
Alignment explanation
Indices: 208548997--208549075 Score: 85
Period size: 26 Copynumber: 3.0 Consensus size: 27
208548987 TCATACGGAA
208548997 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGC-TATTACGGTCATTTTAC
* *
208549022 CATACAGGGGTATTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCATTTTAC
* *
208549049 CCTACAGGGCT-TTACGGTCTTTTTAC
1 CATACAGGGCTATTACGGTCATTTTAC
208549075 C
1 C
208549076 TAATAGGGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
25 8 0.18
26 19 0.42
27 18 0.40
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (27 bp):
CATACAGGGCTATTACGGTCATTTTAC
Found at i:208549159 original size:27 final size:27
Alignment explanation
Indices: 208549129--208549385 Score: 140
Period size: 27 Copynumber: 9.4 Consensus size: 27
208549119 GTAAATCTAC
*
208549129 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
208549156 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* * * *
208549184 AAAGTCAAGGGTATTTCTGTAACTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
* * ** *
208549212 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
*** * * *
208549239 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
208549266 AAACCAAGGGTATTT-TGATAATTTTAC
1 AAACCAAGGGTATTTCAG-TAATTTTAT
* * ** *
208549293 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *
208549320 AAACTAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *** * *
208549347 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
*
208549374 AAATCAAGGGTA
1 AAACCAAGGGTA
208549386 AAATAGTAAT
Statistics
Matches: 183, Mismatches: 41, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.01
27 153 0.84
28 15 0.08
29 14 0.08
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.37
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:208549277 original size:54 final size:54
Alignment explanation
Indices: 208549219--208549358 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
208549209 TGTAAATCAG
208549219 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
* * * * *
208549273 GGGTATTTTGATAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCAA
* ** *
208549327 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
208549359 AAACAGTAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 71 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:208549385 original size:81 final size:79
Alignment explanation
Indices: 208549308--208549600 Score: 214
Period size: 81 Copynumber: 3.6 Consensus size: 79
208549298 AGGGGTATTT
** *
208549308 TGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
1 TGGTAATTTTACAAACTAAGGGTAAATCAGTAATTTTGTAAATCGAGGGTAAAAC-GTAATTCTG
208549373 TAAATCAAGGGTAAAA
65 TAAATC-AGGGTAAAA
* * * * * *
208549389 TAGTAATTCTATAAA-TCGAGGGTAAAAT-TGTAATTCTGTAAATCGAGGGTAAAACGGTAATTC
1 TGGTAATTTTACAAACT-AAGGGT-AAATCAGTAATTTTGTAAATCGAGGGTAAAAC-GTAATTC
*
208549452 TGTAAGTCGAGGGTAAAA
63 TGTAAATC-AGGGTAAAA
* * * ** * * * * * *
208549470 CGATAATTATGTAAATTAGGGGTAAAACGGTAATTATGTAAATCGGGGGTAAAACGATAATTCTG
1 TGGTAATTTTACAAACTAAGGGTAAATCAGTAATTTTGTAAATCGAGGGTAAAACG-TAATTCTG
* ***
208549535 TAAATCGGGGTACTT
65 TAAATCAGGGTAAAA
* * ** **
208549550 TGGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTACAAATCGAGGGTA
1 TGGTAATTTTACAA-ACTAAGGGTAAATCAGTAATTTTGTAAATCGAGGGTA
208549601 TTTTAGTATT
Statistics
Matches: 162, Mismatches: 44, Indels: 13
0.74 0.20 0.06
Matches are distributed among these distances:
80 42 0.26
81 117 0.72
82 3 0.02
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.32
Consensus pattern (79 bp):
TGGTAATTTTACAAACTAAGGGTAAATCAGTAATTTTGTAAATCGAGGGTAAAACGTAATTCTGT
AAATCAGGGTAAAA
Found at i:208549386 original size:27 final size:27
Alignment explanation
Indices: 208549336--208549546 Score: 250
Period size: 27 Copynumber: 7.9 Consensus size: 27
208549326 AGGGTATTTT
*
208549336 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
208549363 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
208549390 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
208549417 TGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
208549444 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
208549471 -GATAATTATGTAAAT-TAGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* * *
208549498 GGTAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
208549525 -GATAATTCTGTAAATCG-GGGTA
1 AG-TAATTCTGTAAATCGAGGGTA
208549547 CTTTGGTAAT
Statistics
Matches: 163, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
26 8 0.05
27 154 0.94
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:208549582 original size:27 final size:26
Alignment explanation
Indices: 208549552--208549641 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 26
208549542 GGGTACTTTG
208549552 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
* *
208549579 GTAATTTTACAAATCGAGGGTATTTTA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
208549606 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCA
208549633 GTAATTTTA
1 GTAATTTTA
208549642 GTAAACTAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.08
27 46 0.88
28 2 0.04
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:208549628 original size:54 final size:53
Alignment explanation
Indices: 208549536--208549641 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 53
208549526 ATAATTCTGT
* *
208549536 AAATCGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTAC
1 AAATCGGGGTACTTTAGTAATTTTACAAGACGAAGGTATTTCAGTAATTTTAC
* * * *
208549589 AAATCGAGGGTATTTTAGTATTTTTACAA-ACTAAGGGTATTTCGGTAATTTTA
1 AAATCG-GGGTACTTTAGTAATTTTACAAGACGAA-GGTATTTCAGTAATTTTA
208549642 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
53 9 0.20
54 36 0.80
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (53 bp):
AAATCGGGGTACTTTAGTAATTTTACAAGACGAAGGTATTTCAGTAATTTTAC
Found at i:208552777 original size:538 final size:539
Alignment explanation
Indices: 208550634--208556655 Score: 10664
Period size: 536 Copynumber: 11.2 Consensus size: 539
208550624 GGGTGTTACA
208550634 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
208550699 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTC-TTCAATTTATT
66 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
* *
208550763 TTCAATTTAAGCCTAGCTGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
131 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
*
208550828 CTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTT
196 CTTTATGACAAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
* * *
208550893 AGCAAAAGTTGTTTCTCCAACCATATACATGTATAATCTACCATTAAACATCAAAATAAACAAAT
260 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
208550958 TTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
325 TTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
*
208551023 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGA
390 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGA
*
208551088 -CTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAG
455 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
208551152 ATGACCAAAATTTGGCTTTT
520 ATGACCAAAATTTGGCTTTT
208551172 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
208551237 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGC-TTTAAAATAATTTTC-TTCAATTTATT
66 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
208551300 TTCAATTTAAGCCTAG-CGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
131 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
*
208551364 CTTTATGGCAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
196 CTTTATGACAAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
208551429 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATA-ACAAAT
260 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
*
208551493 TTATAACATGGTTCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
325 TTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
208551558 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGA
390 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGA
*
208551623 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAG
455 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
*
208551688 ATGACCAAAATTTTGCTTTT
520 ATGACCAAAATTTGGCTTTT
*
208551708 ATTTTGTTTATTTAAACATTTAACTACTAAATTTTATCATACTATGGCAAAAATT--ATTTTTGC
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
*
208551771 CCCTAAATTTTATCAT-TTTACACTTTTGCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
66 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
** *
208551835 TTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
131 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
208551900 CTTTA-GACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
196 CTTTATGACAAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
*
208551964 AGCAAAAGTTGTTTCT-CAACCATAAACTTGCATAATCTACCATTAAACATCAAAATACACAAAT
260 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
* * * *
208552028 TTATAACATGGATCAAACCCTAGACCTTCATCATAAGTCAAATAAATGG-AGAAAGAGATAGATC
325 TTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
* * *
208552092 ATGTTACAAGGATTTCAAGAATGTGAAAATCATT-AAAACGGGGCAAGAACGAACTTACTATGGA
390 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGA
208552156 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
455 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
208552221 ATGACCAAAATTTGGCTTTT
520 ATGACCAAAATTTGGCTTTT
* *
208552241 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTA-CGCAAAAATTAAATTTTTG-
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
* ** * *
208552304 CCCTAAATTTTATCTTATTTACACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCAATTTATT
66 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
208552369 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
131 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
208552434 CTTTTATGACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
196 C-TTTATGACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
*
208552499 AGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
260 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
* *
208552564 TTATAACATAGTTCAAACCCTAGACCTCCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
325 TTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
*
208552629 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTATGGA
390 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGA
208552694 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
455 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
208552759 ATGACCAAAATTTGGCTTTT
520 ATGACCAAAATTTGGCTTTT
208552779 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGG-AAAAATTACATTTTTGC
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
*
208552843 CCTTAAATTTTATCATATTTACACTTTTACCCTA-GCTTTTAAAATAATTTTC-TTCAA-TTATT
66 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
208552905 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
131 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
*
208552970 CTTTATGACAAAATTTATAACTTTTGCAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
196 CTTTATGAC-AAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
208553035 AGCAAAAGTTGTTTCTCCAACCAT-AACATGCATAATCTACCATTAAACATCAAAATACACAAAT
260 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
208553099 TTATAACATGG-TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAAT-GGTAGATC
325 TTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
* * *
208553162 ATGTTACAAGGATTTCAAGAATGTGAAAATCATTAAAAACGGGGCAAGAACGAACTTACTATGGA
390 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGA
208553227 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGA-GGGTTGAAG
455 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
*
208553291 ATGACCAAAATTTGACTTTT
520 ATGACCAAAATTTGGCTTTT
* * *
208553311 ATTTTGTTTATTTAAACA-TTAATTACTAATTTTTATCATACTACGG-AAAAATTAAATTTTTGC
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
* ** * *
208553374 CCCTAAATTTTATCTTATTTACACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCAATTTATT
66 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
*
208553439 TTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
131 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
208553504 CTTTTATGACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
196 C-TTTATGACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
*
208553569 AGCAAAAGTTGTTTCTCTAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
260 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
* *
208553634 TTATAACATAGTTCAAACCCTAGACCTCCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
325 TTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
** * * *
208553699 ATGTTACAAGGATTTCAAAAATTTGAGAATCATTAAAAGCGGGGCAAGAACAGACTTACTATGGA
390 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGA
208553764 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
455 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
208553829 ATGACCAAAATTTGGCTTTT
520 ATGACCAAAATTTGGCTTTT
208553849 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
*
208553914 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCTTTCAATTTATT
66 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
*
208553979 TTCAATTTAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
131 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
*
208554044 CTTTATGAAAAATTTATAACTTTTA-AAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTA
196 CTTTATGACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTA
208554108 GCAAAAGTTGTTTCT-CAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
261 GCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
*
208554172 TATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCA
326 TATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCA
* *
208554237 TGTTACAAGGATTTCAAAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGA-
391 TGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAG
208554301 CTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGA
456 CTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGA
208554366 TGACCAAAATTTGGCTTTT
521 TGACCAAAATTTGGCTTTT
* * *
208554385 ATTTTGTTTATTTAAACATGTAATTACTAAATTTTATCATACTATGGTAAAAATTA-AATTTTGC
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
*
208554449 CCCTAAATTTTAT-ATTTTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
66 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
208554513 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
131 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
*
208554578 CTTTATGACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTA
196 CTTTATGACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTA
208554643 GCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
261 GCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
* *
208554708 TATAACATGGTCCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCA
326 TATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCA
* * *
208554773 TGTTACAAGGATTTCAAGAATGTGAAAATCATTAAAAACGGGGCAAGAACGAACTTACTATGGAG
391 TGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAG
208554838 CTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGA
456 CTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGA
208554903 TGACCAAAATTT-GC-TTT
521 TGACCAAAATTTGGCTTTT
* * *
208554920 ATTTTGTTTATTTAAACA-TTAATTACT-AATTTTATCATACTACGGAAAAAATTAAATTTTTGC
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
* ** * *
208554983 CCCTAAATTTTATCTTATTTACACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCAATTTATT
66 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
*
208555048 TTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
131 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
208555113 CTTTTATGACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
196 C-TTTATGACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
208555178 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
260 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
*
208555243 TTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATC
325 TTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
* *
208555308 ATGTTACAAGGATTTCAAAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGA
390 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGA
* * *
208555373 CCTTGGAAAGCTTAAATAAAATCCTAGCCATGGTGGTC-TCAAAATTTCGGCCGAGGGGTTGAAG
455 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
208555437 ATGACCAAAATTTGGCTTTT
520 ATGACCAAAATTTGGCTTTT
* * * *
208555457 ATTTTGTTTATTTAAACATGTAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGC
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
* * *
208555522 CCCTAAATTTTCT-ATTTTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATT
66 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
*
208555586 TTCAATTTAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
131 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
208555651 CTTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
196 CTTTATGAC-AAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTT
208555716 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
260 AGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAAT
208555781 TTATAACATGG-TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
325 TTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATC
208555845 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGA
390 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGA
208555910 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
455 GCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAG
208555975 ATGACCAAAATTTGGCTTTT
520 ATGACCAAAATTTGGCTTTT
**
208555995 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGAAAAAAATTACATTTTTGC
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
* * *
208556060 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTACAATAATTTTCATTAAATTTATT
66 CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
208556125 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
131 TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
* * *
208556190 CTTTTATGAAAAATTTTATAAGTTTTACAAATTAGTCCTTTTTAGTATTTTCATTGAAAATCACT
196 C-TTTATGACAAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACT
208556255 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
259 TAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAA
208556320 TTTATAACATGGTTCAAACCCTA-ATCCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGA
324 TTTATAACATGGTTCAAACCCTAGA-CCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGA
208556384 TCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATG
388 TCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATG
*
208556449 GAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGA
453 GAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGA
**
208556514 AGATGACCAAAATTTTTCTTTT
518 AGATGACCAAAATTTGGCTTTT
*
208556536 ATTTTGTTTATTTAAACATTTAACTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
1 ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
*
208556601 CCCTAAATTTTATCAT-TTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCAT
66 CCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGCTTTTAAAATAATTTTCAT
208556656 AAACTTTATG
Statistics
Matches: 5254, Mismatches: 186, Indels: 85
0.95 0.03 0.02
Matches are distributed among these distances:
531 72 0.01
532 71 0.01
533 343 0.07
534 592 0.11
535 716 0.14
536 1242 0.24
537 638 0.12
538 755 0.14
539 241 0.05
540 284 0.05
541 300 0.06
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (539 bp):
ATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGC
CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATT
TTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACA
CTTTATGACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTA
GCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
TATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCA
TGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAG
CTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGA
TGACCAAAATTTGGCTTTT
Found at i:208556755 original size:71 final size:71
Alignment explanation
Indices: 208556669--208556805 Score: 256
Period size: 71 Copynumber: 1.9 Consensus size: 71
208556659 CTTTATGACA
*
208556669 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTAACATATTTACACTTTT
208556734 AATACT
66 AATACT
*
208556740 AAATTTTATCATACTATGGCAAAAATTATATTTTTGCCCCTAAATTTTAACATATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTAACATATTTACACTTTT
208556805 A
66 A
208556806 CCCTAGGCTT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 64 1.00
ACGTcount: A:0.36, C:0.16, G:0.04, T:0.44
Consensus pattern (71 bp):
AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTAACATATTTACACTTTT
AATACT
Found at i:208557324 original size:716 final size:718
Alignment explanation
Indices: 208556003--208557380 Score: 2392
Period size: 716 Copynumber: 1.9 Consensus size: 718
208555993 TTATTTTGTT
208556003 TATTTAAACATTTAATTACTAAATTTTATCATACTATGAAAAAAATTACATTTTTGCCCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGAAAAAAATTACATTTTTGCCCCTAAAT
* *
208556068 TTTATCATATTTACACTTTTACCCTAGGCTTGTACAATAATTTTCATTAAATTTATTTTCAATTT
66 TTTAACATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTAAATTTATTTTCAATTT
*
208556133 AAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATG
131 AAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTAGG
* *
208556198 AAAAATTTTATAAGTTTTACAAATTAGTCCTTTTTAGTATTTTCATTGAAAATCACTTAGCAAAA
196 AAAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAA
208556263 GTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAAC
261 GTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAAC
208556328 ATGGTTCAAACCCTAATCCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTAC
326 ATGGTTCAAACCCTAATCCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTAC
* * *
208556393 AAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGA
391 AAGGATTTCAAAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGA
* *
208556458 AAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCA
456 AAGCTTAAACAAAACCATAGCCATGGTGGTCATCAAAATTTCGGCCAAGGGGTTGAAGATGACCA
** *
208556523 AAATTTTTCTTTTATTTTGTTTATTTAAACATTTAACTACTAAATTTTATCATACTATGGCAAAA
521 AAATTTGGCTTTTATTTTGTTTATTTAAACATGTAACTACTAAATTTTATCATACTATGGCAAAA
* * *
208556588 ATTACATTTTTGCCCCTAAATTTTATCA-T-TTTACACTTTTGCCCCTAGGCTTTTAAAATAATT
586 ATTAAATTTATGCCCCTAAATTTTAT-ATTGTTTACACTTTT-ACCCTAGGCTTTTAAAATAATT
208556651 TTCA-TAAACTTTATGACAAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATT
649 TTCATTAAA-TTTATGACAAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATT
208556715 TTATCA
713 TTATCA
* * ** *
208556721 TATTTACACTTTTAA-TACTAAATTTTATCATACTATGGCAAAAATTATATTTTTGCCCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGAAAAAAATTACATTTTTGCCCCTAAAT
* * *
208556785 TTTAACATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCTTTCAATTTATTTTCAATTT
66 TTTAACATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTAAATTTATTTTCAATTT
*
208556850 AAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTAGG
131 AAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTAGG
208556914 ACAAAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAA
196 A-AAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAA
208556978 AGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAA
260 AGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAA
*
208557043 CATGGTTCAAACCCTAGA-CCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTT
325 CATGGTTCAAACCCTA-ATCCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTT
208557107 ACAAGGATTTCAAAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTG
389 ACAAGGATTTCAAAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTG
* *
208557172 GAAAGCTTAAACAAAATCATAGCCATGGTGGTCATCAAAATTTCGGCCGAGGGGTTGAAGATGAC
454 GAAAGCTTAAACAAAACCATAGCCATGGTGGTCATCAAAATTTCGGCCAAGGGGTTGAAGATGAC
* *
208557237 CAAAATTTGGCTTTTATTTTGTTTATTTAAACATGTAATTACTAAATTTTATCATACTATGGTAA
519 CAAAATTTGGCTTTTATTTTGTTTATTTAAACATGTAACTACTAAATTTTATCATACTATGGCAA
208557302 AAATTAAATTTATGCCCCTAAATTTTATATTGTTTACACTTTTACCCTAGGCTTTTAAAATAATT
584 AAATTAAATTTATGCCCCTAAATTTTATATTGTTTACACTTTTACCCTAGGCTTTTAAAATAATT
208557367 TTCATTAAATTTAT
649 TTCATTAAATTTAT
208557381 TTTCAATTTA
Statistics
Matches: 625, Mismatches: 30, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
715 1 0.00
716 428 0.68
717 183 0.29
718 13 0.02
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (718 bp):
TATTTAAACATTTAATTACTAAATTTTATCATACTATGAAAAAAATTACATTTTTGCCCCTAAAT
TTTAACATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTAAATTTATTTTCAATTT
AAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTAGG
AAAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAA
GTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAAC
ATGGTTCAAACCCTAATCCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTAC
AAGGATTTCAAAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGA
AAGCTTAAACAAAACCATAGCCATGGTGGTCATCAAAATTTCGGCCAAGGGGTTGAAGATGACCA
AAATTTGGCTTTTATTTTGTTTATTTAAACATGTAACTACTAAATTTTATCATACTATGGCAAAA
ATTAAATTTATGCCCCTAAATTTTATATTGTTTACACTTTTACCCTAGGCTTTTAAAATAATTTT
CATTAAATTTATGACAAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTA
TCA
Found at i:208559337 original size:539 final size:539
Alignment explanation
Indices: 208556721--208559531 Score: 4763
Period size: 538 Copynumber: 5.2 Consensus size: 539
208556711 AATTTTATCA
* * * *
208556721 TATTTACACTTTTAA-TACTAAATTTTATCATACTATGGCAAAAATTATATTTTTGCCCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
* * *
208556785 TTTAACATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCTTTCAATTTATTTTCAATTT
66 TTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATTT
*
208556850 AAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTAGGA
131 AAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTATGA
208556915 CAAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG
196 -AAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG
208556980 TTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACA
260 TTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACA
208557045 TGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACA
325 TGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACA
* * *
208557110 AGGATTTCAAAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAA
390 AGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAA
* * *
208557175 AGCTTAAACAAAATCATAGCCATGGTGGTCATCAAAATTTCGGCCGAGGGGTTGAAGATGACCAA
455 AGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAA
208557240 AATTTGGCTTTTATTTTGTT
520 AATTTGGCTTTTATTTTGTT
* * *
208557260 TATTTAAACATGTAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGCCCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
*
208557325 TTTAT-ATTGTTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATT
66 TTTATCA-TATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATT
208557389 TAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTATG
130 TAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTATG
*
208557454 ACAAAATTTATAACTTTTGCAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAA
195 A-AAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAA
* *
208557519 CTTGTTTCTCCAACCATTAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAAC
259 GTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAAC
*
208557584 ATGGTCCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTAC
324 ATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTAC
* * *
208557649 AAGGATTTCAAGAATGTGAAAATCA-TAAAAACGGGGCAAGAACGAACTTACTATGGAGCTTGGA
389 AAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGA
208557713 AAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCA
454 AAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCA
* *
208557778 AAATTTGACTTCTATTTTGTT
519 AAATTTGGCTTTTATTTTGTT
* *
208557799 TATTTAAACA-TTAATTACTAATTTTTATCATACTACGGAAAAAATTAAATTTTTGCCCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
* ** * * * *
208557863 TTTATCTTATTTACACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCAATTTATTTTCACTTT
66 TTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATTT
*
208557928 AAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATG
131 AAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATG
*
208557993 ACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG
195 AAAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG
*
208558058 TTGTTTCTCCAACCATAAACATGCATAACCTACCATTAAACATCAAAATACACAAATTTATAACA
260 TTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACA
208558123 TGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACA
325 TGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACA
* * *
208558188 AGGATTTCAAAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAA
390 AGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAA
* * *
208558253 AGCTTAAACAAAATCATAGCCATGGTGGTCATCAAAATTTCGGCCGAGGGGTTGAAGATGACCAA
455 AGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAA
208558318 AATTTGGCTTTTATTTTGTT
520 AATTTGGCTTTTATTTTGTT
* * *
208558338 TATTTAAACATGTAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGCCCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
* *
208558403 TTCTAT--TGTTTACACTTTTACCCTAGGCTTTTAAAATAA-TTTCATTAAATTTCTTTTCAATT
66 TT-TATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATT
208558465 TAAGCCTAGCCGATCCACTTTCATAACTAT-AAAACCCACAATTTCCACTAAATCACACTTTATG
130 TAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTATG
*
208558529 ACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG
195 AAAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAG
208558594 TTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACA
260 TTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACA
* * *
208558659 TGGTCCAAACCTTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACA
325 TGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACA
208558724 AGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAA
390 AGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAA
*
208558789 AGCTTAAACAAAACCCTAGCCACGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAA
455 AGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAA
208558854 AATTTGGCTTTTATTTTGTT
520 AATTTGGCTTTTATTTTGTT
* *
208558874 TATTTAAACATTTAATTACTAAATTTTATCATACTATGAAAAAAATTACATTTTTGCCCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
* *
208558939 TTTATCATATTTACAC-TTTACCCTAGGCTTGTACAATAATTTTCATTAAATTTATTTTCAATTT
66 TTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATTT
*
208559003 AAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATG
131 AAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTATG
* *
208559068 AAAAATTTTATAAGTTTTACAAATTAGTCCTTTTTAGTATTTTCATTGAAAATCACTTAGCAAAA
195 AAAAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAA
*
208559133 GTTGTTTCTGCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACAC-AATTTATAAC
259 GTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAAC
*
208559197 ATGGTTCAAACCCTA-ATCCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTA
324 ATGGTTCAAACCCTAGA-CCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTA
208559261 CAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGG
388 CAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGG
*
208559326 AAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCC-AAGGGTTGAAGATGACC
453 AAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACC
**
208559390 AAAATTTTTCTTTTATTTTGTT
518 AAAATTTGGCTTTTATTTTGTT
* * *
208559412 TATTTAAACATTTAACTACTAAATTTTATCA-ACTATGGCAAAAATTACATTTTTG-CCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
* *
208559475 TTTTTACAT-TTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCA-TAAACTTTAT
66 TTTAT-CATATTTACACTTTT-ACCCTAGGCTTTTAAAATAATTTTCATTAAA-TTTAT
208559532 GACAAAATTT
Statistics
Matches: 2145, Mismatches: 109, Indels: 37
0.94 0.05 0.02
Matches are distributed among these distances:
535 3 0.00
536 442 0.21
537 119 0.06
538 543 0.25
539 493 0.23
540 542 0.25
541 3 0.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (539 bp):
TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
TTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATTT
AAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTATGA
AAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAA
GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
ATTTGGCTTTTATTTTGTT
Found at i:208559617 original size:539 final size:539
Alignment explanation
Indices: 208556721--208559531 Score: 4658
Period size: 540 Copynumber: 5.2 Consensus size: 539
208556711 AATTTTATCA
* * * *
208556721 TATTTACACTTTTAA-TACTAAATTTTATCATACTATGGCAAAAATTATATTTTTGCCCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
* * *
208556785 TTTA-ACATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCTTTCAATTTATTTTCAATT
66 TTTATACTTATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATT
* *
208556849 TAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTAG
131 TAAGCCTAGCCGAACCACTTTCAT-A-TATAAAAACCCACAATTTCCACTAAATCACACTTTTAT
208556913 GACAAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAA
194 GAC-AAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAA
208556978 AGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAA
258 AGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAA
208557043 CATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTA
323 CATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTA
* * *
208557108 CAAGGATTTCAAAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGG
388 CAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGG
* * *
208557173 AAAGCTTAAACAAAATCATAGCCATGGTGGTCATCAAAATTTCGGCCGAGGGGTTGAAGATGACC
453 AAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACC
208557238 AAAATTTGGCTTTTATTTTGTT
518 AAAATTTGGCTTTTATTTTGTT
* * *
208557260 TATTTAAACATGTAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGCCCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
*
208557325 TTTATA-TTGTTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATT
66 TTTATACTTATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATT
*
208557389 TAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTAT
131 TAAGCCTAGCCGAACCACTTTCAT-A-TATAAAAACCCACAATTTCCACTAAATCACACTTTTAT
*
208557453 GACAAAATTTATAACTTTTGCAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAA
194 GAC-AAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAA
* *
208557518 ACTTGTTTCTCCAACCATTAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAA
258 AGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAA
*
208557583 CATGGTCCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTA
323 CATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTA
* * *
208557648 CAAGGATTTCAAGAATGTGAAAATCA-TAAAAACGGGGCAAGAACGAACTTACTATGGAGCTTGG
388 CAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGG
208557712 AAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACC
453 AAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACC
* *
208557777 AAAATTTGACTTCTATTTTGTT
518 AAAATTTGGCTTTTATTTTGTT
* *
208557799 TATTTAAACA-TTAATTACTAATTTTTATCATACTACGGAAAAAATTAAATTTTTGCCCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
** * * * *
208557863 TTTAT-CTTATTTACACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCAATTTATTTTCACTT
66 TTTATACTTATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATT
208557927 TAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTAT
131 TAAGCCTAGCCGAACCACTTTCAT-A-TATAAAAACCCACAATTTCCACTAAATCACACTTTTAT
208557992 GACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAA
194 GACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAA
*
208558057 GTTGTTTCTCCAACCATAAACATGCATAACCTACCATTAAACATCAAAATACACAAATTTATAAC
259 GTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAAC
208558122 ATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTAC
324 ATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTAC
* * *
208558187 AAGGATTTCAAAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGA
389 AAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGA
* * *
208558252 AAGCTTAAACAAAATCATAGCCATGGTGGTCATCAAAATTTCGGCCGAGGGGTTGAAGATGACCA
454 AAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCA
208558317 AAATTTGGCTTTTATTTTGTT
519 AAATTTGGCTTTTATTTTGTT
* * *
208558338 TATTTAAACATGTAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGCCCCTAAA-
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
* * *
208558402 TTTCTA-TTGTTTACACTTTTACCCTAGGCTTTTAAAATAA-TTTCATTAAATTTCTTTTCAATT
66 TTTATACTTATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATT
*
208558465 TAAGCCTAGCCGATCCACTTTCATA-ACTATAAAACCCACAATTTCCACTAAATCACAC-TTTAT
131 TAAGCCTAGCCGAACCACTTTCATATA-TA-AAAACCCACAATTTCCACTAAATCACACTTTTAT
208558528 GACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAA
194 GACAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAA
208558593 GTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAAC
259 GTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAAC
* * *
208558658 ATGGTCCAAACCTTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTAC
324 ATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTAC
208558723 AAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGA
389 AAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGA
*
208558788 AAGCTTAAACAAAACCCTAGCCACGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCA
454 AAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCA
208558853 AAATTTGGCTTTTATTTTGTT
519 AAATTTGGCTTTTATTTTGTT
* *
208558874 TATTTAAACATTTAATTACTAAATTTTATCATACTATGAAAAAAATTACATTTTTGCCCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
* * *
208558939 TTTAT-CATATTTACAC-TTTACCCTAGGCTTGTACAATAATTTTCATTAAATTTATTTTCAATT
66 TTTATACTTATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATT
208559002 TAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTAT
131 TAAGCCTAGCCGAACCACTTTCAT-A-TATAAAAACCCACAATTTCCACTAAATCACACTTTTAT
* * *
208559067 GAAAAATTTTATAAGTTTTACAAATTAGTCCTTTTTAGTATTTTCATTGAAAATCACTTAGCAAA
194 GACAAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAA
*
208559132 AGTTGTTTCTGCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACAC-AATTTATAA
258 AGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAA
*
208559196 CATGGTTCAAACCCTA-ATCCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTT
323 CATGGTTCAAACCCTAGA-CCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTT
208559260 ACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTG
387 ACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTG
*
208559325 GAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCC-AAGGGTTGAAGATGAC
452 GAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGAC
**
208559389 CAAAATTTTTCTTTTATTTTGTT
517 CAAAATTTGGCTTTTATTTTGTT
* * *
208559412 TATTTAAACATTTAACTACTAAATTTTATCA-ACTATGGCAAAAATTACATTTTTG-CCCTAAAT
1 TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
* * *
208559475 TTTTTACAT-TTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCA-TAAACTTTAT
66 TTTATACTTATTTACACTTTT-ACCCTAGGCTTTTAAAATAATTTTCATTAAA-TTTAT
208559532 GACAAAATTT
Statistics
Matches: 2140, Mismatches: 110, Indels: 45
0.93 0.05 0.02
Matches are distributed among these distances:
535 1 0.00
536 441 0.21
537 118 0.06
538 539 0.25
539 500 0.23
540 540 0.25
541 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (539 bp):
TATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTAAATTTTTGCCCCTAAAT
TTTATACTTATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATT
TAAGCCTAGCCGAACCACTTTCATATATAAAAACCCACAATTTCCACTAAATCACACTTTTATGA
CAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAA
GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
ATTTGGCTTTTATTTTGTT
Found at i:208559663 original size:71 final size:73
Alignment explanation
Indices: 208559536--208559673 Score: 244
Period size: 71 Copynumber: 1.9 Consensus size: 73
208559526 CTTTATGACA
208559536 AAATTTTATCATACTATGGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTT
1 AAATTTTATCATACTATGGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTT
208559601 TAATTACT
66 TAATTACT
* *
208559609 AAATTTTATCATACTAT-GGCAAAAATTATATTTTTG-CCCTAAATTTTATCATATTTACACTTT
1 AAATTTTATCATACTATGGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTT
208559672 TA
66 TA
208559674 CCCTAGGCTT
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
71 29 0.46
72 17 0.27
73 17 0.27
ACGTcount: A:0.36, C:0.14, G:0.05, T:0.45
Consensus pattern (73 bp):
AAATTTTATCATACTATGGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTT
TAATTACT
Found at i:208560315 original size:715 final size:712
Alignment explanation
Indices: 208558884--208560247 Score: 2213
Period size: 716 Copynumber: 1.9 Consensus size: 712
208558874 TATTTAAACA
208558884 TTTAATTACTAAATTTTATCATACTATGAAAAAAATTACATTTTTGCCCCTAAATTTTATCATAT
1 TTTAATTACTAAATTTTATCATACTATGAAAAAAATTACATTTTTGCCCCTAAATTTTATCATAT
*
208558949 TTACACTTTACCCTAGGCTTGTACAATAATTTTCATTAAATTTATTTTCAATTTAAGCCTAGCCG
66 TTACACTTTACCCTAGGCTTGTAAAATAATTTTCATTAAATTTATTTTCAATTTAAGCCTAGCCG
*
208559014 AACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGAAAAATTTTAT
131 AACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTAGGAAAAATTTTAT
* *
208559079 AAGTTTTACAAATTAGTCCTTTTTAGTATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTGC
196 AACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTGC
208559144 AACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAATTTATAACATGGTTCAAACC
261 AACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAATTTATAACATGGTTCAAACC
208559209 CTAATCCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAA
326 CTAATCCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAA
* * *
208559274 AACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAA
391 AACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAAGCTTAAACAA
* * **
208559339 AACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGTTGAAGATGACCAAAATTTTTCTTTT
456 AACCATAGCCATGGTGGTCATCAAAATTTCGGCCAAGGGTTGAAGATGACCAAAATTTGGCTTTT
* * *
208559404 ATTTTGTTTATTTAAACATTTAACTACTAAATTTTATCAACTATGGCAAAAATTACATTTTTGCC
521 ATTTTGTTTATTTAAACATGTAACTACTAAATTTTATCAACTATGGCAAAAATTAAATTTATGCC
*
208559469 CTAAATTTTTTACATTTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATAAACTTTATGA
586 CTAAA-TTTTTACATTTTACACTTTTGACCCTAGGCTTTTAAAATAATTTTCATAAACTTTATGA
* * **** * * *
208559534 CAAAATTTTATCATACTATGGGAAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACT
650 C-AAATTTTA-CAGACTATGCGAAAAAATTACATTTAAAACCCTAAATTTCATCATAATCACACT
** *
208559599 TTTAATTACTAAATTTTATCATACTATGGCAAAAATTATATTTTTG-CCCTAAATTTTATCATAT
1 TTTAATTACTAAATTTTATCATACTATGAAAAAAATTACATTTTTGCCCCTAAATTTTATCATAT
* * *
208559663 TTACACTTTTACCCTAGGCTTTTAAAATAATTTTCTTTCAATTTATTTTCAATTTAAGCCTAGCC
66 TTACAC-TTTACCCTAGGCTTGTAAAATAATTTTCATTAAATTTATTTTCAATTTAAGCCTAGCC
*
208559728 GATCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACAC-TTTAGGACAAAA-TTT
130 GAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTAGGA-AAAATTTT
208559791 ATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCT
194 ATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCT
*
208559856 CTCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACAACAAATTTATAACATGGTTC
259 -GCAACCATAAACATGCATAATCTACCATTAAACATCAAAATAC-AC-AATTTATAACATGGTTC
*
208559921 AAACCCTAGA-CCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAAGGAT
321 AAACCCTA-ATCCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
208559985 TTC-AAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAAGCTT
385 TTCAAAAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAAGCTT
* *
208560049 AAACAAAATCATAGCCATGGTGGTCATCAAAATTTCGGCCGAGGGTTGAAGATGACCAAAATTTG
450 AAACAAAACCATAGCCATGGTGGTCATCAAAATTTCGGCCAAGGGTTGAAGATGACCAAAATTTG
* *
208560114 GCTTTTATTTTGTTTATTTAAACATGTAATTACTAAATTTTATCATACTATGGTAAAAATTAAAT
515 GCTTTTATTTTGTTTATTTAAACATGTAACTACTAAATTTTATCA-ACTATGGCAAAAATTAAAT
*
208560179 TTATGCCCCTAAA-TTTTATATTGTTACACTTTT-ACCCTAGGCTTTTAAAATAATTTTCATTAA
579 TTATG-CCCTAAATTTTTACATT-TTACACTTTTGACCCTAGGCTTTTAAAATAATTTTCA-TAA
208560242 A-TTTAT
641 ACTTTAT
208560248 TTTCAATTTA
Statistics
Matches: 610, Mismatches: 29, Indels: 19
0.93 0.04 0.03
Matches are distributed among these distances:
714 96 0.16
715 190 0.31
716 200 0.33
717 116 0.19
718 8 0.01
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (712 bp):
TTTAATTACTAAATTTTATCATACTATGAAAAAAATTACATTTTTGCCCCTAAATTTTATCATAT
TTACACTTTACCCTAGGCTTGTAAAATAATTTTCATTAAATTTATTTTCAATTTAAGCCTAGCCG
AACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTAGGAAAAATTTTAT
AACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTGC
AACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAATTTATAACATGGTTCAAACC
CTAATCCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAA
AACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAAGCTTAAACAA
AACCATAGCCATGGTGGTCATCAAAATTTCGGCCAAGGGTTGAAGATGACCAAAATTTGGCTTTT
ATTTTGTTTATTTAAACATGTAACTACTAAATTTTATCAACTATGGCAAAAATTAAATTTATGCC
CTAAATTTTTACATTTTACACTTTTGACCCTAGGCTTTTAAAATAATTTTCATAAACTTTATGAC
AAATTTTACAGACTATGCGAAAAAATTACATTTAAAACCCTAAATTTCATCATAATCACACT
Found at i:208561212 original size:533 final size:538
Alignment explanation
Indices: 208559601--208561262 Score: 2841
Period size: 533 Copynumber: 3.1 Consensus size: 538
208559591 TTTACACTTT
* * * *
208559601 TAATTACTAAATTTTATCATACTATGGCAAAAATTATATTTTTG-CCCTAAATTTTATCATATTT
1 TAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGCCCCTAAATTTTATCTTATTT
*
208559665 ACACTTTTACCCTAGGCTTTTAAAATAATTTTCTTTCAATTTATTTTCAATTTAAGCCTAGCCGA
66 ACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGA
*
208559730 TCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTAGGACAAAATTTATAA
131 TCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAA
208559795 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCTCA
196 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTC-CA
208559860 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACAACAAATTTATAACATGGTTCAAAC
260 ACCATAAACATGCATAATCTACCATTAAACATCAAAATAC-ACAAATTTATAACATGGTTCAAAC
208559925 CCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAAGGATTTC-A
324 CCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAAGGATTTCAA
208559989 AAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAAGCTTAAACA
389 AAACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACC-TGGAAAGCTTAAACA
208560054 AAATCATAGCCATGGTGGTCATCAAAATTTCGGCCGA-GGGTTGAAGATGACCAAAATTTGGCTT
453 AAAT-ATAGCCATGGTGGTCATCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTT
208560118 TTATTTTGTTTATTTAAACATG
517 TTATTTTGTTTATTTAAACATG
* *
208560140 TAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGCCCCTAAATTTTATATT-GTT
1 TAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGCCCCTAAATTTTATCTTATTT
*
208560204 ACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTAAATTTATTTTCAATTTAAGCCTAGCCGA
66 ACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGA
208560269 TCCACTTTCATAACTAT-AAAACCCACAATTTCCACT-AATCACACTTTATGACAAAATTTATAA
131 TCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAA
* *
208560332 CTTTTGCAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAACTTGTTTCTCCA
196 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGC-AAAAGTTGTTTCTCCA
* *
208560397 ACCATTAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTA-AACATGGTCCAAACC
260 ACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACC
*
208560461 CTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAAGGATTTCAAG
325 CTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAAGGATTTCAAA
** * * *
208560526 AATGTG-AAATCA-TAAAAACGGGGCAAGAACGAACTTACTATGGAGCTTGGAAAGCTTAAACAA
390 AACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGA-CCTGGAAAGCTTAAACAA
** * * *
208560589 AACCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGACTTCT
454 AATATAGCCATGGTGGTCATCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTT
208560654 ATTTTGTTTATTTAAACAT-
519 ATTTTGTTTATTTAAACATG
* * * *
208560673 TAATTACTAATTTTTATCATACTACGGAAAAAATTAAATTTTTGCCCCTAAATTTTATCTTATTT
1 TAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGCCCCTAAATTTTATCTTATTT
** * * *
208560738 ACACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGA
66 ACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGA
*
208560803 ACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTATGAC-AAATTTATAA
131 TCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAA
208560867 C-TTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTT-TCCAA
196 CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
*
208560930 CCATAAACATGCATAACCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
261 CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
208560995 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAAGGATTTCAAAA
326 TAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAAGGATTTCAAAA
208561060 ACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTGGAAAGCTTAAA-AAAA
391 ACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTGGAAAGCTTAAACAAAA
208561124 TATAGCCATGGTGGTCATCAAAATTTCGG-CGAGGGGTTGAAGATGACCAAAATTTGGCTTTTAT
456 TATAGCCATGGTGGTCATCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTAT
208561188 TTTGTTTATTTAAACATG
521 TTTGTTTATTTAAACATG
208561206 TAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGCCCCTAAAATTTT
1 TAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGCCCCT-AAATTTT
208561263 CTATTGTNNN
Statistics
Matches: 1053, Mismatches: 57, Indels: 31
0.92 0.05 0.03
Matches are distributed among these distances:
532 101 0.10
533 253 0.24
534 243 0.23
535 143 0.14
536 30 0.03
537 114 0.11
538 32 0.03
539 123 0.12
540 14 0.01
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (538 bp):
TAATTACTAAATTTTATCATACTATGGTAAAAATTAAATTTATGCCCCTAAATTTTATCTTATTT
ACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCAATTTAAGCCTAGCCGA
TCCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTATGACAAAATTTATAA
CTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAA
CCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTCAAACCC
TAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAAGGATTTCAAAA
ACATGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTGGAAAGCTTAAACAAAA
TATAGCCATGGTGGTCATCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTAT
TTTGTTTATTTAAACATG
Found at i:208566500 original size:29 final size:29
Alignment explanation
Indices: 208566466--208566597 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
208566456 TACTCGATTT
** * *
208566466 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
208566495 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
208566524 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
208566553 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
208566582 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
208566598 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:208573971 original size:29 final size:29
Alignment explanation
Indices: 208573937--208574068 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
208573927 TACTCGATTT
** * *
208573937 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
208573966 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
208573995 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
208574024 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
208574053 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
208574069 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:208582931 original size:39 final size:40
Alignment explanation
Indices: 208582717--208582922 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
208582707 TGAATGATAC
* *
208582717 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
208582756 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
208582796 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
208582836 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * ** *
208582875 CCCGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
208582915 CC-GGCTAA
1 CCGGGCTAA
208582923 ATTCCGAAGA
Statistics
Matches: 153, Mismatches: 11, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 47 0.31
40 104 0.68
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:208590816 original size:40 final size:40
Alignment explanation
Indices: 208590761--208590967 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
208590751 TGAATGATAC
* * *
208590761 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
208590801 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
208590841 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
208590881 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
208590920 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
208590960 CC-GGCTAA
1 CCGGGCTAA
208590968 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 38 0.25
40 114 0.74
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:208593802 original size:30 final size:31
Alignment explanation
Indices: 208593759--208593816 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
208593749 TTAATACGAA
*
208593759 TTTTGGCAAAATTACATTTTTGCCCCTAAAC
1 TTTTGGCAAAATTACACTTTTGCCCCTAAAC
*
208593790 TTTT-GCATAATTACACTTTTGCCCCTA
1 TTTTGGCAAAATTACACTTTTGCCCCTA
208593817 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (31 bp):
TTTTGGCAAAATTACACTTTTGCCCCTAAAC
Found at i:208600485 original size:907 final size:908
Alignment explanation
Indices: 208598041--208600748 Score: 4597
Period size: 907 Copynumber: 3.0 Consensus size: 908
208598031 GTAAGCTTAT
*
208598041 GTTAGAATGGGCCCGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
1 GTTAGAATGGGCCTGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
* *
208598106 ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTATGTTTTACTAAAAAACTGAGT
66 ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTGTGTTTTACTGAAAAACTGAGT
208598171 AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTTGGGGTTTACCAAAAAAATCT-ATTTC
131 AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTT-GGGTTTACCAAAAAAATCTAATTT-
208598235 TCATTTCTCTGCTTTCTATTTTTACAAAATTC-AGTTGTCCCCTTCCTTTTTCCTCTCGACCCTG
194 TCATTTCTCTGCTTTCTATTTTTACAAAATTCGA-TTGTCCCCTTCCTTTTTCCTCTCGACCCTG
208598299 CTGCTGAGTTTCCCCAC-TTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAAT
258 CTGCTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAAT
* * * * *
208598363 CCATCGCTTTAGTTCTCTATTTGCATTCCTAGTAAGTATGGTAGTATAGTATTGAGGAATAATAA
323 CCATCACTTTAGTTCTCTATTTGCATTCTTGGTAAGTACGGTAGTATAGTATTGAGGAATAATGA
208598428 ATCATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAA-CAGAGGGCTGGAGATCATTAATTG
388 ATCATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTG
* * * *
208598492 ACATTCTAAGTGTACGAAACCCCGCTTGATTCGACTGAAGGTAACATTTTTGTGAGTTTAACGTT
453 ACATTCTAAGTGTACAAAACCCCGATTGATTCGACTGAAGGTAACGTTTTTGTGAGTTTAGCGTT
208598557 CGGTCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTA
518 CGGTCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTA
208598622 AATAAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAA
583 AATAAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAA
* * *
208598687 ACACAAAAAACGAGAACCGTTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGCTCA
648 ACACAAAAAATGAGAACTGTTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGGTCA
* * *
208598752 CCCGTGTGATAGGCCGTGTGGTAGTACACAAGCGTA--TGAGCCTACACGGGCAGGCCACATGGG
713 CCCGTGTGGTAGGCCGTGTGGTAGTACAC-AG-GTATGTGGGCCCACACGGGCAGGCCACATGGG
* *
208598815 CGTGTGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGTACAGGTTGCCTAAGTCGACTATGACC
776 CGTGTGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTTGCCTAAGTCGACTATGACC
*
208598880 TGCCGTAGGGTCGGTAAGCATTACTTAGACCCCTGATTCTGTAATTTGTTATGTGATGTATGTAT
841 TGCCGTAGGGTCGGTAAGCATTACTTAGACCCCTGATTCTGTAATTTGTTGTGTGATGTATGTAT
*
208598945 CTT
906 CTA
* * * *
208598948 GTTAGAATGGGCCTGCTGGTCCGGTGGATAACTAGAGTGTTGGTGGGATAGAGGTTCTGTGTTCT
1 GTTAGAATGGGCCTGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
208599013 ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTGTGTTTTACTGAAAAACTGAGT
66 ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTGTGTTTTACTGAAAAACTGAGT
* *
208599078 AGTGGGGA----GT-G-G-G---TAAGGGAATTAGAGTTGGTGTTTACCAAAAAAATCTAATTCT
131 AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTTGG-GTTTACCAAAAAAATCTAATTTT
*
208599133 CATTTCTCTGCTTTCTATTTTTACAAAATTCGGTTGTCCCCTTCCTTTTTCCTCTCGACCCTGCT
195 CATTTCTCTGCTTTCTATTTTTACAAAATTCGATTGTCCCCTTCCTTTTTCCTCTCGACCCTGCT
208599198 GCTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAATCC
260 GCTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAATCC
* * *
208599263 ATCACTTTAGTTCTCTTTTTGCATTCTTGGTAAATACGGTAGTACAGTATTGAGGAATAATGAAT
325 ATCACTTTAGTTCTCTATTTGCATTCTTGGTAAGTACGGTAGTATAGTATTGAGGAATAATGAAT
208599328 CATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTGAC
390 CATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTGAC
* * *
208599393 ATTCTAAGTGTACAAAACCCCGATTGATTCGACTGAGGGTAACGTTTTTGTGAGTTTAGTGTTCA
455 ATTCTAAGTGTACAAAACCCCGATTGATTCGACTGAAGGTAACGTTTTTGTGAGTTTAGCGTTCG
* *
208599458 ATCATCTCGTGGGATTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTAAA
520 GTCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTAAA
* * *
208599523 TAAAGGATCGGGAGTGCTTGAGCTAGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAAAC
585 TAAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAAAC
* * * * *
208599588 ACAAAAAATGAGAACTGTTAAAAGTCAAAACGATTCTTTCGATGCCACTCAAGCGTGTGGTCACC
650 ACAAAAAATGAGAACTGTTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGGTCACC
* *
208599653 CGTGTGGTAAGCCGTGTGGTAGTACACAGGTATGTGGGCCCACACGGGCAGGCCACATAGGCGTG
715 CGTGTGGTAGGCCGTGTGGTAGTACACAGGTATGTGGGCCCACACGGGCAGGCCACATGGGCGTG
* *
208599718 TGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTTGCCTAAATCGACTATGACCTGTC
780 TGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTTGCCTAAGTCGACTATGACCTGCC
* *
208599783 GTAGGGTCGGTAAGCATTACTTAGACCCTTGATTCTATAATTTGTTGTGTGATGTATGTATCTA
845 GTAGGGTCGGTAAGCATTACTTAGACCCCTGATTCTGTAATTTGTTGTGTGATGTATGTATCTA
208599847 GTTAGAATGGGCCTGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
1 GTTAGAATGGGCCTGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
* *
208599912 ATTCTCTACGTGAGCAAGGGGATAGTATTTTTGTTGCAAGTTTGTGTTTTAGTGAAAAACTGAGT
66 ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTGTGTTTTACTGAAAAACTGAGT
208599977 AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTTGGGTTTACCAAAAAAATCTAATTTTC
131 AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTTGGGTTTACCAAAAAAATCTAATTTTC
208600042 ATTTCTCTGCTTTCTATTTTTACAAAATTCGATTGT-CCCTTCCTTTTTCCTCTCGACCCTGCTG
196 ATTTCTCTGCTTTCTATTTTTACAAAATTCGATTGTCCCCTTCCTTTTTCCTCTCGACCCTGCTG
208600106 CTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAATCCA
261 CTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAATCCA
* *
208600171 TCACTTCAGTTCTCTGTTTGCATTCTTGGTAAGTACGGTAGTATAGTATTGAGGAATAATGAATC
326 TCACTTTAGTTCTCTATTTGCATTCTTGGTAAGTACGGTAGTATAGTATTGAGGAATAATGAATC
208600236 ATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTGACA
391 ATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTGACA
* *
208600301 TTCTAAGTGTACAAAACCCCGATTGATTCGACTGAAGGTAACGTTTTCGTGAGTTTAGCATTCGG
456 TTCTAAGTGTACAAAACCCCGATTGATTCGACTGAAGGTAACGTTTTTGTGAGTTTAGCGTTCGG
*
208600366 TCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTAGCGTTATATTGGTTAAAT
521 TCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTAAAT
208600431 AAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAAACA
586 AAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAAACA
* *
208600496 CAAAAAATGAGAA-TCGGTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGGTCACT
651 CAAAAAATGAGAACT-GTTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGGTCACC
** * *
208600560 CGTGTGGTAGGCCGTGTGGTAGTACACAGGCGTGTGGGCCCACACGGGTAGGCCACATGGGCATG
715 CGTGTGGTAGGCCGTGTGGTAGTACACAGGTATGTGGGCCCACACGGGCAGGCCACATGGGCGTG
* * * *
208600625 TGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTCGCCTAAGTTGACTATGGCCTACC
780 TGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTTGCCTAAGTCGACTATGACCTGCC
* *
208600690 GTAGGGTCGGTAAGCGTTATTTAGACCCCTGATTCTGTAATTTGTTGTGTGATGTATGT
845 GTAGGGTCGGTAAGCATTACTTAGACCCCTGATTCTGTAATTTGTTGTGTGATGTATGT
208600749 GTTAAACATG
Statistics
Matches: 1685, Mismatches: 98, Indels: 36
0.93 0.05 0.02
Matches are distributed among these distances:
896 2 0.00
897 114 0.07
898 149 0.09
899 572 0.34
900 1 0.00
901 1 0.00
902 1 0.00
903 4 0.00
904 1 0.00
905 1 0.00
906 2 0.00
907 762 0.45
908 58 0.03
909 17 0.01
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (908 bp):
GTTAGAATGGGCCTGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTGTGTTTTACTGAAAAACTGAGT
AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTTGGGTTTACCAAAAAAATCTAATTTTC
ATTTCTCTGCTTTCTATTTTTACAAAATTCGATTGTCCCCTTCCTTTTTCCTCTCGACCCTGCTG
CTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAATCCA
TCACTTTAGTTCTCTATTTGCATTCTTGGTAAGTACGGTAGTATAGTATTGAGGAATAATGAATC
ATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTGACA
TTCTAAGTGTACAAAACCCCGATTGATTCGACTGAAGGTAACGTTTTTGTGAGTTTAGCGTTCGG
TCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTAAAT
AAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAAACA
CAAAAAATGAGAACTGTTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGGTCACCC
GTGTGGTAGGCCGTGTGGTAGTACACAGGTATGTGGGCCCACACGGGCAGGCCACATGGGCGTGT
GAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTTGCCTAAGTCGACTATGACCTGCCG
TAGGGTCGGTAAGCATTACTTAGACCCCTGATTCTGTAATTTGTTGTGTGATGTATGTATCTA
Found at i:208603673 original size:25 final size:25
Alignment explanation
Indices: 208603643--208603720 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
208603633 TAGGATTTTA
208603643 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
208603668 TGTGAT-AAGGCCG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
208603690 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
208603715 TGTGAT
1 TGTGAT
208603721 AAGGCCGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.28, C:0.10, G:0.32, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:208603693 original size:47 final size:47
Alignment explanation
Indices: 208603642--208603879 Score: 413
Period size: 47 Copynumber: 5.1 Consensus size: 47
208603632 TTAGGATTTT
208603642 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
208603689 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
208603736 ATGTGATGAATGTGAACATGTGTAGGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
208603783 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
208603830 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
208603877 ATG
1 ATG
208603880 CGAAACATGT
Statistics
Matches: 182, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 182 1.00
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:208603919 original size:46 final size:46
Alignment explanation
Indices: 208603853--208603943 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
208603843 GAACATGTAT
* *
208603853 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
208603899 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
208603944 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:208607491 original size:29 final size:29
Alignment explanation
Indices: 208607429--208607531 Score: 111
Period size: 29 Copynumber: 3.6 Consensus size: 29
208607419 GTGACGAGAT
* * *
208607429 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
208607458 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
*
208607487 TGGCACTATGTGTGC-AGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGA-GCTTGGAAT-ATA
208607516 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
208607532 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
28 4 0.07
29 56 0.93
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:208611860 original size:40 final size:40
Alignment explanation
Indices: 208611794--208611960 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
208611784 AAATTGAATG
* * *
208611794 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
208611833 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
208611873 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
208611913 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
208611953 ATATCCGG
1 ATATCCGG
208611961 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:208619860 original size:40 final size:40
Alignment explanation
Indices: 208619794--208619960 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
208619784 AAATTGAATG
* * *
208619794 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
208619833 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
208619873 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
208619913 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
208619953 ATATCCGG
1 ATATCCGG
208619961 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:208624422 original size:29 final size:29
Alignment explanation
Indices: 208624363--208624437 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
208624353 GTTGTGAGAT
* * *
208624363 TGGCACTAAGTGTGTGGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
*
208624392 TGGCACTAAGTGTGCGAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TACA
208624421 TGGCACTCAAGTGTGCG
1 TGGCACT-AAGTGTGCG
208624438 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
28 5 0.12
29 26 0.65
30 9 0.22
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATACA
Found at i:208625420 original size:125 final size:125
Alignment explanation
Indices: 208625190--208625424 Score: 454
Period size: 126 Copynumber: 1.9 Consensus size: 125
208625180 GTATTGGTTG
208625190 GGCCTACTCGATTATTATGCATATGTCATGGCTGATTATTTCGGTGTTAAATTCATGATTTGGTA
1 GGCCTACTCGATTATTATGCATATGTCATGGCTGATTATTTCGGTGTTAAATTCATGATTTGGTA
208625255 ATAGTGTAGTGGGGAGATGCTCGGTGATGATTAGCCTTTGGCATGACACAAGTCTTGGTA
66 ATAGTGTAGTGGGGAGATGCTCGGTGATGATTAGCCTTTGGCATGACACAAGTCTTGGTA
208625315 GGCCTACTCGATTATTATGCCATATGTCATGGCTGATTATTTCGGTGTTAAATTCATGATTTGGT
1 GGCCTACTCGATTATTATG-CATATGTCATGGCTGATTATTTCGGTGTTAAATTCATGATTTGGT
208625380 AATAGTGTAG-GGGGAGATGCTCGGTGATGATTAGCCTTTGGCATG
65 AATAGTGTAGTGGGGAGATGCTCGGTGATGATTAGCCTTTGGCATG
208625425 GCTAGTCATG
Statistics
Matches: 109, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
125 54 0.50
126 55 0.50
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.36
Consensus pattern (125 bp):
GGCCTACTCGATTATTATGCATATGTCATGGCTGATTATTTCGGTGTTAAATTCATGATTTGGTA
ATAGTGTAGTGGGGAGATGCTCGGTGATGATTAGCCTTTGGCATGACACAAGTCTTGGTA
Found at i:208631902 original size:31 final size:31
Alignment explanation
Indices: 208631843--208631904 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
208631833 GAGTTTGATC
*
208631843 ATATAGCACTAAGTGTGCGAGCTGAATATAT
1 ATATAGCACTAAGTGTGCGAGCTCAATATAT
208631874 ATATAGCACTAAGTGTGCG-GACTCAATATAT
1 ATATAGCACTAAGTGTGCGAG-CTCAATATAT
208631905 GCTTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (31 bp):
ATATAGCACTAAGTGTGCGAGCTCAATATAT
Found at i:208639931 original size:31 final size:31
Alignment explanation
Indices: 208639872--208639933 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
208639862 GAGTTTGATC
*
208639872 ATATAGCACTAAGTGTGCGAGCTGAATATAT
1 ATATAGCACTAAGTGTGCGAGCTCAATATAT
208639903 ATATAGCACTAAGTGTGCG-GACTCAATATAT
1 ATATAGCACTAAGTGTGCGAG-CTCAATATAT
208639934 GCTTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (31 bp):
ATATAGCACTAAGTGTGCGAGCTCAATATAT
Found at i:208642996 original size:30 final size:29
Alignment explanation
Indices: 208642902--208643003 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
208642892 TATAGTGAAT
* * *
208642902 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
208642931 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
208642959 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
208642989 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
208643004 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:208650842 original size:30 final size:29
Alignment explanation
Indices: 208650748--208650849 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
208650738 TATAGTGAAT
* * *
208650748 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
208650777 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
208650805 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
208650835 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
208650850 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:208658242 original size:40 final size:40
Alignment explanation
Indices: 208658183--208658351 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
208658173 CGGGACTTTA
* * *
208658183 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
208658223 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
208658263 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
208658303 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
208658343 CCCGGATAT
1 CCCGGATAT
208658352 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:208668699 original size:41 final size:41
Alignment explanation
Indices: 208668654--208668771 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
208668644 TGAAAGATAA
208668654 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
208668695 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
208668725 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
208668766 ATGTAG
1 ATGTAG
208668772 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:208668710 original size:71 final size:71
Alignment explanation
Indices: 208668622--208668785 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
208668612 GAGATGTATC
208668622 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
208668687 AGGACA
66 AGGACA
208668693 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
208668758 AGGACA
66 AGGACA
208668764 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
208668786 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:208675006 original size:40 final size:39
Alignment explanation
Indices: 208674895--208675045 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
208674885 TTAATCACGT
* * *
208674895 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
208674935 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
208674975 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
208675015 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
208675046 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:208675029 original size:80 final size:79
Alignment explanation
Indices: 208674895--208675045 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
208674885 TTAATCACGT
*
208674895 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
208674960 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
208674975 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
208675038 CCGGATAT
64 CCGGATAT
208675046 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:208684172 original size:19 final size:19
Alignment explanation
Indices: 208684150--208684210 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
208684140 TTAACCCCCC
208684150 AAAAAAAAACCTAACCCAA
1 AAAAAAAAACCTAACCCAA
*
208684169 AAAAAAAAA---GA---AA
1 AAAAAAAAACCTAACCCAA
*
208684182 AAAGAAAAACCTAACCCAA
1 AAAAAAAAACCTAACCCAA
208684201 AAAAAAAAAC
1 AAAAAAAAAC
208684211 TAAAAAAACC
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
13 10 0.31
16 2 0.06
19 20 0.62
ACGTcount: A:0.75, C:0.18, G:0.03, T:0.03
Consensus pattern (19 bp):
AAAAAAAAACCTAACCCAA
Found at i:208684173 original size:18 final size:18
Alignment explanation
Indices: 208684150--208684213 Score: 64
Period size: 18 Copynumber: 3.8 Consensus size: 18
208684140 TTAACCCCCC
208684150 AAAAAAAAACCTAACCCA
1 AAAAAAAAACCTAACCCA
**
208684168 AAAAAAAAA-AGAA---A
1 AAAAAAAAACCTAACCCA
*
208684182 AAAGAAAAACCTAACCCA
1 AAAAAAAAACCTAACCCA
*
208684200 AAAAAAAAAACTAA
1 AAAAAAAAACCTAA
208684214 AAAAACCCTA
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
14 9 0.26
15 2 0.06
17 2 0.06
18 22 0.63
ACGTcount: A:0.75, C:0.17, G:0.03, T:0.05
Consensus pattern (18 bp):
AAAAAAAAACCTAACCCA
Found at i:208684216 original size:33 final size:31
Alignment explanation
Indices: 208684150--208684218 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 31
208684140 TTAACCCCCC
208684150 AAAAAAAAACCTAACCCAAAAAAAAAAAGAA
1 AAAAAAAAACCTAACCCAAAAAAAAAAAGAA
**
208684181 AAAAGAAAAACCTAACCCAAAAAAAAAAACTA
1 AAAA-AAAAACCTAACCCAAAAAAAAAAAGAA
208684213 AAAAAA
1 AAAAAA
208684219 CCCTAGCCAC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 6 0.17
32 29 0.83
ACGTcount: A:0.77, C:0.16, G:0.03, T:0.04
Consensus pattern (31 bp):
AAAAAAAAACCTAACCCAAAAAAAAAAAGAA
Found at i:208691860 original size:71 final size:69
Alignment explanation
Indices: 208691762--208691936 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 69
208691752 TTTTCAAGGG
* *
208691762 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
208691826 GTTTT
65 GTTTT
** * *
208691831 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
208691896 TGTTTT
64 TGTTTT
** * *
208691902 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
208691937 TTTAATTTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 31 0.33
71 60 0.65
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:208692057 original size:71 final size:72
Alignment explanation
Indices: 208691936--208692129 Score: 263
Period size: 71 Copynumber: 2.8 Consensus size: 72
208691926 GAGTTAAGCC
* *
208691936 TTTTAATTTTTGT-TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGC
1 TTTTAATTTTTGTGTTTT-AAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
208691999 TGAGGTAT
65 TGAGGTAT
* * *
208692007 TTTTAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGGGACGCT
1 TTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
208692072 GAGGTAT
66 GAGGTAT
* * * *
208692079 TTTT-A-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCT
208692130 TTTAATTTTT
Statistics
Matches: 110, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
69 27 0.25
70 13 0.12
71 47 0.43
72 23 0.21
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.40
Consensus pattern (72 bp):
TTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
GAGGTAT
Found at i:208692091 original size:193 final size:193
Alignment explanation
Indices: 208691762--208692421 Score: 901
Period size: 193 Copynumber: 3.4 Consensus size: 193
208691752 TTTTCAAGGG
* * * * * *
208691762 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
*
208691827 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
66 TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
208691892 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
* * *
208691955 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTTAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
* ** * *
208692019 TGTTTTAATTTCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGGGACGCTGAGGTATTTTTA
66 T-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTA
208692084 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
130 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
* *
208692148 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
* * * * *
208692213 TTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATT
66 -TTTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTT
* * * ** * *
208692278 TCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTA
127 TTAGTTTATGTTT-T--A-AATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TT
*
208692342 CTTTTTCA
186 GTTTTTCA
* * * *
208692350 AAATTAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGATATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
208692415 TTTTCAA
66 TTTTCAA
208692422 TTTACGTTGT
Statistics
Matches: 418, Mismatches: 37, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
192 26 0.06
193 191 0.46
194 29 0.07
195 1 0.00
197 57 0.14
198 3 0.01
200 1 0.00
201 41 0.10
202 69 0.17
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (193 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
Found at i:208692253 original size:75 final size:73
Alignment explanation
Indices: 208692133--208692326 Score: 264
Period size: 75 Copynumber: 2.6 Consensus size: 73
208692123 TAAGCCTTTT
* * * * * *
208692133 AATTTTTGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 AATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
*
208692197 GTATTTTC
66 GTAATTTC
* *
208692205 AATTTCTGTTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATG
1 AATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATG
208692270 AGGTAATTTC
64 AGGTAATTTC
* *
208692280 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
208692327 ACCTTTTAAT
Statistics
Matches: 108, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
72 13 0.12
73 30 0.28
75 65 0.60
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (73 bp):
AATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
GTAATTTC
Found at i:208692769 original size:139 final size:140
Alignment explanation
Indices: 208692276--208692843 Score: 1000
Period size: 140 Copynumber: 4.0 Consensus size: 140
208692266 GATGAGGTAA
208692276 TTTCAATTT-CTGTT-TGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
1 TTTCAATTTAC-GTTGT-TCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
* *
208692339 CTACTTTTTCAAAATTAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGATATT
64 CTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATT
208692404 TTCAATTTCTGT
129 TTCAATTTCTGT
208692416 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
1 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
*
208692481 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTT
66 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTT
208692546 CAATTTCTGT
131 CAATTTCTGT
*
208692556 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCT
1 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
208692621 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTA-TTT
66 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTT
208692685 CAATTTCTGT
131 CAATTTCTGT
*
208692695 TTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
1 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
208692760 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTAT
66 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTAT
*
208692824 TTTCAATTTCCGT
128 TTTCAATTTCTGT
208692837 CTTTCAA
1 -TTTCAA
208692844 AAAAAAAATT
Statistics
Matches: 413, Mismatches: 8, Indels: 11
0.96 0.02 0.03
Matches are distributed among these distances:
138 2 0.00
139 125 0.30
140 257 0.62
141 11 0.03
142 12 0.03
143 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTT
CAATTTCTGT
Found at i:208692796 original size:279 final size:282
Alignment explanation
Indices: 208692276--208692843 Score: 1004
Period size: 279 Copynumber: 2.0 Consensus size: 282
208692266 GATGAGGTAA
*
208692276 TTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
1 TTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCT
*
208692341 ACTTTTTCAAAATTAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGATATTTT
66 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGATATTTT
208692406 CAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCT
131 CAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCT
208692471 TTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC-G
196 TTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACAG
*
208692534 CTAAGGTATTTTCAATTTCTGT-
260 CTAAGGTATTTTCAATTTCCGTC
208692556 TTTCAATTTAC-G-TTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTT
1 TTTCAATTT-CTGTTTG-TCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTT
*
208692619 CTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTA-T
64 CTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGATATT
*
208692683 TTCAATTTCTGTTTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAAC
129 TTCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAAC
208692748 CTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACA
194 CTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACA
*
208692813 TGCTGAGGTATTTTCAATTTCCGTC
259 -GCTAAGGTATTTTCAATTTCCGTC
208692838 TTTCAA
1 TTTCAA
208692844 AAAAAAAATT
Statistics
Matches: 276, Mismatches: 6, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
278 2 0.01
279 129 0.47
280 117 0.42
281 22 0.08
282 6 0.02
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (282 bp):
TTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCT
ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGATATTTT
CAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCT
TTTAATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACAGC
TAAGGTATTTTCAATTTCCGTC
Found at i:208692877 original size:81 final size:72
Alignment explanation
Indices: 208692763--208692984 Score: 241
Period size: 72 Copynumber: 3.0 Consensus size: 72
208692753 AATTTCTACT
* ** * * *
208692763 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATT
208692826 TCAATTTCCG
63 TCAATTTCCG
* *
208692836 TCTTTCAAAAAAAAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
**
208692901 AATTTCAATTTTTG
59 AATTTCAATTTCCG
*
208692915 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
208692980 ATTTC
66 ATTTC
208692985 TGTTCAAAAT
Statistics
Matches: 128, Mismatches: 12, Indels: 19
0.81 0.08 0.12
Matches are distributed among these distances:
72 63 0.49
73 1 0.01
74 4 0.03
78 4 0.03
79 22 0.17
80 4 0.03
81 29 0.23
82 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCCG
Found at i:208692933 original size:72 final size:72
Alignment explanation
Indices: 208692848--208692988 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 72
208692838 TTTCAAAAAA
*
208692848 AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTT
1 AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
208692913 TGTTTTC
66 TGTTTTC
*
208692920 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
208692985 TGTT
66 TGTT
208692989 CAAAATGAGT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:208692999 original size:49 final size:49
Alignment explanation
Indices: 208692942--208693037 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
208692932 ATATTGCGAG
*
208692942 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
208692991 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
208693038 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:208693084 original size:121 final size:121
Alignment explanation
Indices: 208692870--208693109 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 121
208692860 ATATTGAGAG
* *
208692870 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTTTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
*
208692935 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
208692991 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
208693056 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
208693110 TTTCAAAAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:208693273 original size:151 final size:148
Alignment explanation
Indices: 208692991--208693339 Score: 477
Period size: 151 Copynumber: 2.3 Consensus size: 148
208692981 TTTCTGTTCA
* *
208692991 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
* * *
208693056 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACAGGCTGAGGTATTTTCAATTTCTGTCTTTC---AAAA
*
208693121 AAAATCAACTCATATTGTGAG
128 AAAATCAACTCATATTGCGAG
* *
208693142 AAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC--AAAAATCAACTCA
** * *
208693207 TATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACAGGCTGAGGTATTTTCAATTTTTGTCTTTC-A
64 TATTGCGAGAAATGAGTTGAGCCTCAAG---ACAGGCTGAGGTATTTTCAATTTCTGTCTTTCAA
208693270 AAAAAATCAACTCATATTGCGAG
126 AAAAAATCAACTCATATTGCGAG
** *
208693293 AGGTGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
208693340 CAAATGAGTT
Statistics
Matches: 177, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
151 114 0.64
152 1 0.01
153 33 0.19
155 29 0.16
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (148 bp):
AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACAGGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAA
ATCAACTCATATTGCGAG
Found at i:208693288 original size:77 final size:74
Alignment explanation
Indices: 208692991--208693339 Score: 443
Period size: 79 Copynumber: 4.6 Consensus size: 74
208692981 TTTCTGTTCA
* *
208692991 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC--AAAATTCAACTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCA
208693054 TATTGCGAG
66 TATTGCGAG
* *
208693063 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAAATCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG-TTTTC----AAAAAAATCA
*
208693128 ACTCATATTGTGAG
61 ACTCATATTGCGAG
* *
208693142 AAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCA
208693207 TATTGCGAG
66 TATTGCGAG
** * * *
208693216 AGGTGAGTTGAGCCTC-GGTTCACAGGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAG---ACACGCTGAGGTATTTTCAATTTCTGT-TTTCAAAAAAATCAA
208693280 CTCATATTGCGAG
62 CTCATATTGCGAG
** ** *
208693293 AGGTGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTT
208693340 CAAATGAGTT
Statistics
Matches: 242, Mismatches: 23, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
72 42 0.17
73 6 0.02
74 37 0.15
75 22 0.09
76 24 0.10
77 43 0.18
78 6 0.02
79 62 0.26
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (74 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCA
TATTGCGAG
Found at i:208693521 original size:79 final size:78
Alignment explanation
Indices: 208693344--208693679 Score: 208
Period size: 88 Copynumber: 4.1 Consensus size: 78
208693334 TCTGTTCAAA
* * * * * *
208693344 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTC
1 TGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAATTTATATCTTTCAAAAAAAATCAACTC
* *
208693409 ATATTGCTAGAGG
66 ACATTGCGAGAGG
* * * *
208693422 TGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTC-AAAAAAATCAAC
1 TGAGTTGAGCCTCGGATCACACACTGAGCTA--TTTTCAATTTATATCTTTCAAAAAAAATCAAC
*
208693486 TCACATTGCGAGATG
64 TCACATTGCGAGAGG
* ** * ** * * *
208693501 TGAGTTGAGCCTCGGGTCACA-TGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTGTTTTCA
1 TGAGTTGAGCCTCGGATCACACACT-GAGCTATTTTCAATTTATATCTTTCAAA----------A
* *
208693565 AAAATCAACTCATATTGCGAGAAG
55 AAAATCAACTCACATTGCGAGAGG
* * *** * * * *
208693589 TGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAA
1 TGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAA-TT-T-ATATCTTTCAAAAAAAATCAA
*
208693654 CTCATATTGCGAGAGG
63 CTCACATTGCGAGAGG
208693670 TGAGTTGAGC
1 TGAGTTGAGC
208693680 TTTTTAATTT
Statistics
Matches: 204, Mismatches: 36, Indels: 33
0.75 0.13 0.12
Matches are distributed among these distances:
77 15 0.07
78 27 0.13
79 48 0.24
80 16 0.08
81 33 0.16
88 53 0.26
89 1 0.00
90 1 0.00
91 10 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (78 bp):
TGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAATTTATATCTTTCAAAAAAAATCAACTC
ACATTGCGAGAGG
Found at i:208693551 original size:14 final size:13
Alignment explanation
Indices: 208693532--208693567 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
208693522 TGTCGAGGTA
208693532 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
208693545 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
208693559 TTTTCAAAA
1 TTTTCAAAA
208693568 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:208693625 original size:88 final size:88
Alignment explanation
Indices: 208693476--208693637 Score: 236
Period size: 88 Copynumber: 1.8 Consensus size: 88
208693466 TATTTTTCAA
* * *
208693476 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
208693541 TCTGTTTTTCAAATTCTGTTTTC
66 TCTGTTTTTCAAATTCTGTTTTC
* * * *
208693564 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAA
*
208693628 TTCTGTTTTT
65 ATCTGTTTTT
208693638 TTTCAAAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
87 1 0.02
88 64 0.98
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
TCTGTTTTTCAAATTCTGTTTTC
Found at i:208693697 original size:30 final size:30
Alignment explanation
Indices: 208693661--208693721 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
208693651 CAACTCATAT
208693661 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
208693691 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
208693721 T
1 T
208693722 ATTTTTCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.43
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:208693786 original size:253 final size:247
Alignment explanation
Indices: 208693344--208693890 Score: 721
Period size: 253 Copynumber: 2.2 Consensus size: 247
208693334 TCTGTTCAAA
*
208693344 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTG---TCTTTCAAAAAAAATCAA
1 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAAATCAA
* *
208693406 CTCATATTGCTAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTT
66 CTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTT
* * * ** *
208693471 TTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTT
131 TTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGAGGTATTTT
* **
208693536 CAAAATCTGTTTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAG
195 CAAAATCTGCTTTTCAAATTAAG-TTTCAAAAAATCAACTCATATTGCGAGAAG
* *
208693589 TGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAA
1 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAAATCAA
* * * * *
208693654 CTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AA
66 CTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAA
* * *
208693717 TTTCTATTTTTC-AAAAATCAACTGATATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGA
122 TTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGA
* *
208693781 GGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGG
187 GGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAAATCAACTCATATTGCGAGAAG
*
208693842 TGAGTTGAGCCTTGGCTCACGCGCTAAGCTATTTTCAATTTCTGTTTTT
1 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTT
208693891 AATGTCTGTT
Statistics
Matches: 263, Mismatches: 26, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
245 43 0.16
248 41 0.16
249 1 0.00
250 3 0.01
251 2 0.01
252 5 0.02
253 144 0.55
254 5 0.02
255 14 0.05
256 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (247 bp):
TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAAATCAA
CTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTT
TTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGAGGTATTTTC
AAAATCTGCTTTTCAAATTAAGTTTCAAAAAATCAACTCATATTGCGAGAAG
Found at i:208694583 original size:30 final size:30
Alignment explanation
Indices: 208694543--208694608 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 30
208694533 TTAACCCCCC
208694543 AAAAAAAAACCTAA-CCCAAAAAAAAAGAA
1 AAAAAAAAACCTAACCCCAAAAAAAAAGAA
**
208694572 AAAAGAAAAACCTAACCCCAAAAAAAAACTA
1 AAAA-AAAAACCTAACCCCAAAAAAAAAGAA
208694603 AAAAAA
1 AAAAAA
208694609 CCCTAGCCAC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 4 0.12
30 12 0.36
31 17 0.52
ACGTcount: A:0.74, C:0.18, G:0.03, T:0.05
Consensus pattern (30 bp):
AAAAAAAAACCTAACCCCAAAAAAAAAGAA
Found at i:208694603 original size:17 final size:17
Alignment explanation
Indices: 208694540--208694600 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
208694530 CCATTAACCC
208694540 CCCAAAAAAAAACCTAA
1 CCCAAAAAAAAACCTAA
*
208694557 CCCAAAAAAAAA--GAA
1 CCCAAAAAAAAACCTAA
208694572 ---AAAAGAAAAACCTAA
1 CCCAAAA-AAAAACCTAA
208694587 CCCCAAAAAAAAAC
1 -CCCAAAAAAAAAC
208694601 TAAAAAAACC
Statistics
Matches: 35, Mismatches: 2, Indels: 13
0.70 0.04 0.26
Matches are distributed among these distances:
12 4 0.11
13 5 0.14
15 4 0.11
17 12 0.34
18 6 0.17
19 4 0.11
ACGTcount: A:0.69, C:0.25, G:0.03, T:0.03
Consensus pattern (17 bp):
CCCAAAAAAAAACCTAA
Found at i:208697169 original size:12 final size:12
Alignment explanation
Indices: 208697152--208697187 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
208697142 ATTCATTTGA
208697152 CATTCATGCATT
1 CATTCATGCATT
208697164 CATTCATGCATT
1 CATTCATGCATT
*
208697176 CATTCATACATT
1 CATTCATGCATT
208697188 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:208702311 original size:71 final size:69
Alignment explanation
Indices: 208702213--208702387 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 69
208702203 TTTTCAAGGG
* *
208702213 AAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTAT
208702277 GTTTT
65 GTTTT
** * *
208702282 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTA
208702347 TGTTTT
64 TGTTTT
** * *
208702353 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
208702388 TTTAATTTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 31 0.33
71 60 0.65
72 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTT
Found at i:208702508 original size:71 final size:72
Alignment explanation
Indices: 208702387--208702580 Score: 263
Period size: 71 Copynumber: 2.8 Consensus size: 72
208702377 GAGTTAAGCC
* *
208702387 TTTTAATTTTTGT-TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGC
1 TTTTAATTTTTGTGTTTT-AAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
208702450 TGAGGTAT
65 TGAGGTAT
* * *
208702458 TTTTAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGGGACGCT
1 TTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
208702523 GAGGTAT
66 GAGGTAT
* * * *
208702530 TTTT-A-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCT
208702581 TTTAATTTTT
Statistics
Matches: 110, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
69 27 0.25
70 13 0.12
71 47 0.43
72 23 0.21
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.40
Consensus pattern (72 bp):
TTTTAATTTTTGTGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
GAGGTAT
Found at i:208702542 original size:193 final size:193
Alignment explanation
Indices: 208702213--208702870 Score: 892
Period size: 193 Copynumber: 3.4 Consensus size: 193
208702203 TTTTCAAGGG
* * * * * *
208702213 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
*
208702278 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
66 TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
208702343 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
* * *
208702406 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTTAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
* ** * *
208702470 TGTTTTAATTTCAACTCATATTGCGAGAGGTGAATTGAGCCTCGGGGGACGCTGAGGTATTTTTA
66 T-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTA
208702535 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
130 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
* *
208702599 AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
* * * *
208702664 TTTTTCAAAAAAATCAACT--TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATT
66 -TTTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTT
* * * ** * *
208702727 TCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTA
127 TTAGTTTATGTTT-T--A-AATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TT
*
208702791 CTTTTTCA
186 GTTTTTCA
* * * *
208702799 AAATTAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGATATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
208702864 TTTTCAA
66 TTTTCAA
208702871 TTTACGTTGT
Statistics
Matches: 417, Mismatches: 36, Indels: 21
0.88 0.08 0.04
Matches are distributed among these distances:
192 26 0.06
193 191 0.46
194 29 0.07
195 49 0.12
196 3 0.01
197 8 0.02
198 1 0.00
199 41 0.10
200 69 0.17
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (193 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCA
Found at i:208702702 original size:73 final size:72
Alignment explanation
Indices: 208702584--208702775 Score: 244
Period size: 73 Copynumber: 2.6 Consensus size: 72
208702574 TAAGCCTTTT
* * * * * *
208702584 AATTTTTGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 AATTTCTGTTTGTCAAAAATCAACT-ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
*
208702648 GTATTTTC
65 GTAATTTC
*
208702656 AATTTCTGTTTTTCAAAAAAATCAACT-TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGA
1 AATTTCTGTTTGTC--AAAAATCAACTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGA
208702720 GGTAATTTC
64 GGTAATTTC
* *
208702729 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATTTCTGTTTGTCAAAAATCAACT-ATATTGCGAGAGGTGAGTTGA
208702776 ACCTTTTAAT
Statistics
Matches: 106, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
71 10 0.09
72 13 0.12
73 73 0.69
75 10 0.09
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (72 bp):
AATTTCTGTTTGTCAAAAATCAACTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
TAATTTC
Found at i:208702904 original size:140 final size:140
Alignment explanation
Indices: 208702725--208703293 Score: 1009
Period size: 140 Copynumber: 4.0 Consensus size: 140
208702715 GATGAGGTAA
208702725 TTTCAATTT-CTGTT-TGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
1 TTTCAATTTAC-GTTGT-TCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTT
* *
208702788 CTACTTTTTCAAAATTAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGATATT
64 CTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATT
208702853 TTCAATTTCTGT
129 TTCAATTTCTGT
208702865 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
1 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
*
208702930 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTT
66 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTT
208702995 CAATTTCTGT
131 CAATTTCTGT
*
208703005 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCT
1 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
208703070 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTT
66 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTT
208703135 CAATTTCTGT
131 CAATTTCTGT
*
208703145 TTTCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
1 TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
208703210 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTAT
66 ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTAT
*
208703274 TTTCAATTTCCGT
128 TTTCAATTTCTGT
208703287 CTTTCAA
1 -TTTCAA
208703294 AAAAAAAATT
Statistics
Matches: 415, Mismatches: 8, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
139 2 0.00
140 383 0.92
141 2 0.00
142 22 0.05
143 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
TTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCT
ACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTT
CAATTTCTGT
Found at i:208703149 original size:13 final size:13
Alignment explanation
Indices: 208703131--208703164 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
208703121 CGCTGAGGTA
*
208703131 TTTTCAATTTCTG
1 TTTTCAATTTATG
208703144 TTTTCAATTTATG
1 TTTTCAATTTATG
208703157 TTGTTCAA
1 TT-TTCAA
208703165 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Done.