Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 664 of 770
Found at i:208703327 original size:81 final size:72
Alignment explanation
Indices: 208703213--208703434 Score: 241
Period size: 72 Copynumber: 3.0 Consensus size: 72
208703203 AATTTCTACT
* ** * * *
208703213 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTAATT
208703276 TCAATTTCCG
63 TCAATTTCCG
* *
208703286 TCTTTCAAAAAAAAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 T-TTTC------AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
**
208703351 AATTTCAATTTTTG
59 AATTTCAATTTCCG
*
208703365 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
208703430 ATTTC
66 ATTTC
208703435 TGTTCAAAAT
Statistics
Matches: 128, Mismatches: 12, Indels: 19
0.81 0.08 0.12
Matches are distributed among these distances:
72 63 0.49
73 1 0.01
74 4 0.03
78 4 0.03
79 22 0.17
80 4 0.03
81 29 0.23
82 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCCG
Found at i:208703383 original size:72 final size:72
Alignment explanation
Indices: 208703298--208703438 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 72
208703288 TTTCAAAAAA
*
208703298 AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTT
1 AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
208703363 TGTTTTC
66 TGTTTTC
*
208703370 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
208703435 TGTT
66 TGTT
208703439 CAAAATGAGT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:208703449 original size:49 final size:49
Alignment explanation
Indices: 208703392--208703487 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
208703382 ATATTGCGAG
*
208703392 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
208703441 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
208703488 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:208703534 original size:121 final size:121
Alignment explanation
Indices: 208703320--208703559 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 121
208703310 ATATTGAGAG
* *
208703320 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTTTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
*
208703385 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
208703441 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
* * *
208703506 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
208703560 TTTCAAAAAA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:208703717 original size:76 final size:74
Alignment explanation
Indices: 208703441--208703787 Score: 450
Period size: 76 Copynumber: 4.6 Consensus size: 74
208703431 TTTCTGTTCA
* *
208703441 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC--AAAATTCAACTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCA
208703504 TATTGCGAG
66 TATTGCGAG
* *
208703513 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG-TTTTC---AAAAAAATCAA
*
208703578 CTCATATTGTGAG
62 CTCATATTGCGAG
* *
208703591 AAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCA
208703656 TATTGCGAG
66 TATTGCGAG
** * *
208703665 AGGTGAGTTGAGCCTC-GGTTCACAGGCTGAGGTATTTTCAATTT-TGTCTTTCAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAG---ACACGCTGAGGTATTTTCAATTTCTGT-TTTCAAAAAAATCAA
208703728 CTCATATTGCGAG
62 CTCATATTGCGAG
** ** *
208703741 AGGTGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTT
208703788 CAAATGAGTT
Statistics
Matches: 242, Mismatches: 21, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
72 42 0.17
73 6 0.02
74 56 0.23
75 6 0.02
76 64 0.26
77 6 0.02
78 62 0.26
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (74 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTCA
TATTGCGAG
Found at i:208703721 original size:150 final size:148
Alignment explanation
Indices: 208703441--208703787 Score: 484
Period size: 150 Copynumber: 2.3 Consensus size: 148
208703431 TTTCTGTTCA
* *
208703441 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
* * *
208703506 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACAGGCTGAGGTATTTTCAATTTCTGTCTTTC--AAAAA
*
208703571 AAATCAACTCATATTGTGAG
129 AAATCAACTCATATTGCGAG
* *
208703591 AAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAATCAACTTA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTC--AAAAATCAACTCA
** *
208703656 TATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACAGGCTGAGGTATTTTCAATTT-TGTCTTTC-A
64 TATTGCGAGAAATGAGTTGAGCCTCAAG---ACAGGCTGAGGTATTTTCAATTTCTGTCTTTCAA
208703718 AAAAAATCAACTCATATTGCGAG
126 AAAAAATCAACTCATATTGCGAG
** *
208703741 AGGTGAGTTGAGCCTCAAGACACATTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
208703788 CAAATGAGTT
Statistics
Matches: 177, Mismatches: 15, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
150 114 0.64
151 1 0.01
152 33 0.19
153 7 0.04
154 22 0.12
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (148 bp):
AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACAGGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAA
ATCAACTCATATTGCGAG
Found at i:208703969 original size:79 final size:78
Alignment explanation
Indices: 208703792--208704127 Score: 208
Period size: 88 Copynumber: 4.1 Consensus size: 78
208703782 TCTGTTCAAA
* * * * * *
208703792 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTC
1 TGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAATTTATATCTTTCAAAAAAAATCAACTC
* *
208703857 ATATTGCTAGAGG
66 ACATTGCGAGAGG
* * * *
208703870 TGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTC-AAAAAAATCAAC
1 TGAGTTGAGCCTCGGATCACACACTGAGCTA--TTTTCAATTTATATCTTTCAAAAAAAATCAAC
*
208703934 TCACATTGCGAGATG
64 TCACATTGCGAGAGG
* ** * ** * * *
208703949 TGAGTTGAGCCTCGGGTCACA-TGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTGTTTTCA
1 TGAGTTGAGCCTCGGATCACACACT-GAGCTATTTTCAATTTATATCTTTCAAA----------A
* *
208704013 AAAATCAACTCATATTGCGAGAAG
55 AAAATCAACTCACATTGCGAGAGG
* * *** * * * *
208704037 TGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAA
1 TGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAA-TT-T-ATATCTTTCAAAAAAAATCAA
*
208704102 CTCATATTGCGAGAGG
63 CTCACATTGCGAGAGG
208704118 TGAGTTGAGC
1 TGAGTTGAGC
208704128 TTTTTAATTT
Statistics
Matches: 204, Mismatches: 36, Indels: 33
0.75 0.13 0.12
Matches are distributed among these distances:
77 15 0.07
78 27 0.13
79 48 0.24
80 16 0.08
81 33 0.16
88 53 0.26
89 1 0.00
90 1 0.00
91 10 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (78 bp):
TGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAATTTATATCTTTCAAAAAAAATCAACTC
ACATTGCGAGAGG
Found at i:208703999 original size:14 final size:13
Alignment explanation
Indices: 208703980--208704015 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
208703970 TGTCGAGGTA
208703980 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
208703993 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
208704007 TTTTCAAAA
1 TTTTCAAAA
208704016 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:208704073 original size:88 final size:88
Alignment explanation
Indices: 208703924--208704085 Score: 236
Period size: 88 Copynumber: 1.8 Consensus size: 88
208703914 TATTTTTCAA
* * *
208703924 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
208703989 TCTGTTTTTCAAATTCTGTTTTC
66 TCTGTTTTTCAAATTCTGTTTTC
* * * *
208704012 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAA
*
208704076 TTCTGTTTTT
65 ATCTGTTTTT
208704086 TTTCAAAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
87 1 0.02
88 64 0.98
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
TCTGTTTTTCAAATTCTGTTTTC
Found at i:208704145 original size:30 final size:30
Alignment explanation
Indices: 208704109--208704169 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
208704099 CAACTCATAT
208704109 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
208704139 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
208704169 T
1 T
208704170 ATTTTTCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.43
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:208704234 original size:253 final size:247
Alignment explanation
Indices: 208703792--208704338 Score: 721
Period size: 253 Copynumber: 2.2 Consensus size: 247
208703782 TCTGTTCAAA
*
208703792 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTG---TCTTTCAAAAAAAATCAA
1 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAAATCAA
* *
208703854 CTCATATTGCTAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTT
66 CTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTT
* * * ** *
208703919 TTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTT
131 TTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGAGGTATTTT
* **
208703984 CAAAATCTGTTTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAG
195 CAAAATCTGCTTTTCAAATTAAG-TTTCAAAAAATCAACTCATATTGCGAGAAG
* *
208704037 TGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAA
1 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAAATCAA
* * * * *
208704102 CTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AA
66 CTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAA
* * *
208704165 TTTCTATTTTTC-AAAAATCAACTGATATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGA
122 TTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGA
* *
208704229 GGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGG
187 GGTATTTTCAAAATCTGCTTTTCAAATTAAGTTTCAAAAAATCAACTCATATTGCGAGAAG
*
208704290 TGAGTTGAGCCTTGGCTCACGCGCTAAGCTATTTTCAATTTCTGTTTTT
1 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTT
208704339 AATGTCTGTT
Statistics
Matches: 263, Mismatches: 26, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
245 43 0.16
248 41 0.16
249 1 0.00
250 3 0.01
251 2 0.01
252 5 0.02
253 144 0.55
254 5 0.02
255 14 0.05
256 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (247 bp):
TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAAATCAA
CTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTCAATTTATATTT
TTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTAAACCTCCAGTCACATATCGAGGTATTTTC
AAAATCTGCTTTTCAAATTAAGTTTCAAAAAATCAACTCATATTGCGAGAAG
Found at i:208705038 original size:29 final size:29
Alignment explanation
Indices: 208704991--208705053 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
208704981 TTAACCCCCC
208704991 AAAAAAAAACCTAACCCAAAAAAAAAGAA
1 AAAAAAAAACCTAACCCAAAAAAAAAGAA
*
208705020 AAAAGAAAAACCTAA-CCAAAAAAAAATAA
1 AAAA-AAAAACCTAACCCAAAAAAAAAGAA
208705049 AAAAA
1 AAAAA
208705054 CCCTAGCCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 1 0.03
29 21 0.66
30 10 0.31
ACGTcount: A:0.78, C:0.14, G:0.03, T:0.05
Consensus pattern (29 bp):
AAAAAAAAACCTAACCCAAAAAAAAAGAA
Found at i:208705040 original size:17 final size:16
Alignment explanation
Indices: 208704989--208705045 Score: 59
Period size: 17 Copynumber: 3.7 Consensus size: 16
208704979 CATTAACCCC
208704989 CCAAAAAAAAACCTAA
1 CCAAAAAAAAACCTAA
*
208705005 CCCAAAAAAAAA--GAA
1 -CCAAAAAAAAACCTAA
208705020 --AAAAGAAAAACCTAA
1 CCAAAA-AAAAACCTAA
208705035 CCAAAAAAAAA
1 CCAAAAAAAAA
208705046 TAAAAAAACC
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
12 4 0.12
13 5 0.15
15 4 0.12
16 5 0.15
17 15 0.45
ACGTcount: A:0.74, C:0.19, G:0.04, T:0.04
Consensus pattern (16 bp):
CCAAAAAAAAACCTAA
Found at i:208707614 original size:12 final size:12
Alignment explanation
Indices: 208707597--208707632 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
208707587 ATTCATTTGA
208707597 CATTCATGCATT
1 CATTCATGCATT
208707609 CATTCATGCATT
1 CATTCATGCATT
*
208707621 CATTCATACATT
1 CATTCATGCATT
208707633 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:208716069 original size:41 final size:41
Alignment explanation
Indices: 208716024--208716141 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
208716014 TGAAAGATAA
208716024 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
208716065 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
208716095 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
208716136 ATGTAG
1 ATGTAG
208716142 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:208716080 original size:71 final size:71
Alignment explanation
Indices: 208715992--208716155 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
208715982 GAGATGTATC
208715992 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
208716057 AGGACA
66 AGGACA
208716063 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
208716128 AGGACA
66 AGGACA
208716134 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
208716156 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:208723641 original size:41 final size:41
Alignment explanation
Indices: 208723596--208723713 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
208723586 TGAAAGATAA
208723596 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
208723637 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
208723667 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
208723708 ATGTAG
1 ATGTAG
208723714 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:208723652 original size:71 final size:71
Alignment explanation
Indices: 208723564--208723727 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
208723554 GAGATGTATC
208723564 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
208723629 AGGACA
66 AGGACA
208723635 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
208723700 AGGACA
66 AGGACA
208723706 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
208723728 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:208728791 original size:40 final size:39
Alignment explanation
Indices: 208728626--208728809 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
208728616 GAAATTGATG
* * *
208728626 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
208728666 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
208728706 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
208728746 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
208728785 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
208728810 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:208728834 original size:80 final size:81
Alignment explanation
Indices: 208728666--208728854 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
208728656 GCTGGAAATT
* * * *
208728666 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
208728731 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
208728747 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
208728810 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
208728826 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
208728855 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:208731396 original size:30 final size:30
Alignment explanation
Indices: 208731362--208731422 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
208731352 CCCTTAACTC
208731362 AAACTTTGGAAAAATTACAATTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTTCCCCT
* * * * *
208731392 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTTCCCCT
208731422 A
1 A
208731423 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTTCCCCT
Found at i:208735301 original size:20 final size:19
Alignment explanation
Indices: 208735265--208735313 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
208735255 AAGGGCTATT
208735265 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTAAAATAA
*
208735284 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTAAAATAA
*
208735304 TTGAAAATGT
1 TTGTAAATGT
208735314 CAGGTGCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 9 0.35
20 16 0.62
21 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTAAAATAA
Found at i:208736197 original size:49 final size:48
Alignment explanation
Indices: 208736068--208736235 Score: 162
Period size: 49 Copynumber: 3.5 Consensus size: 48
208736058 TCAGACACTA
* * * *
208736068 ACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAG
1 ACCTGTCTGGGACATGGCATCGAC-CAGATATATGAAAGCCAATGTAAG
* * * *
208736117 ACCTGCCTGGAACATGGCATCGGCCATGATATATGAAAGTCAATGTAAG
1 ACCTGTCTGGGACATGGCATCGACCA-GATATATGAAAGCCAATGTAAG
* **
208736166 ACCTGTCTGGGACATGGCATCGACTTAG--ATATGTTAGCCAATGTAAG
1 ACCTGTCTGGGACATGGCATCGAC-CAGATATATGAAAGCCAATGTAAG
*
208736213 ACCATGT-TTGGAGCATGGCATCG
1 ACC-TGTCTGGGA-CATGGCATCG
208736236 GCATCATACC
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
47 23 0.23
48 14 0.14
49 61 0.62
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (48 bp):
ACCTGTCTGGGACATGGCATCGACCAGATATATGAAAGCCAATGTAAG
Found at i:208739355 original size:46 final size:46
Alignment explanation
Indices: 208739287--208739588 Score: 169
Period size: 46 Copynumber: 6.5 Consensus size: 46
208739277 TTTGTGTGCT
208739287 AGTGTAAGA-CATGTCTGGGACATGCATCGGCTACATTAGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCTACATTAGAGAGCC
* * ** * *
208739332 ATTGTAAGACCATGTCTGGGACATGGCATTGGCATTGA-GACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TACATTA-GAGAGCC
* * * ** * *
208739380 ATTGTAA-AACATGTCTGGGACATGAATCTCCT-CGTGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCTACATTA-G-AGAGCC
* * * *
208739425 AGTGTAAGA-CATGTCTGGGACATG-ATCGACTACGA-TA-TGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCTAC-ATTAGAGAGCC
* * * * *
208739468 AGTGTAATACCATGTTTGGGACATGGCATCAGC-ACGTATAGAG-GTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTACAT-TAGAGAGCC
* * * *
208739514 AATGTAAGACCATGTCTGGGACATGGCATCAGC-ACAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTAC--AT-T-AGAGAGCC
208739564 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
208739589 GCGTCGGCCT
Statistics
Matches: 200, Mismatches: 37, Indels: 36
0.73 0.14 0.13
Matches are distributed among these distances:
43 10 0.05
44 18 0.09
45 41 0.20
46 61 0.31
47 24 0.12
48 18 0.09
49 4 0.02
50 24 0.12
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCTACATTAGAGAGCC
Found at i:208741216 original size:80 final size:80
Alignment explanation
Indices: 208741132--208741280 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
208741122 TATGGTAACC
* * * *
208741132 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
208741196 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
208741212 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
208741277 CCGG
66 CCGG
208741281 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:208741222 original size:40 final size:38
Alignment explanation
Indices: 208741173--208741280 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
208741163 ATCACGATTT
*
208741173 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
208741213 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
208741253 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
208741281 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:208744914 original size:46 final size:44
Alignment explanation
Indices: 208744855--208744969 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
208744845 ACAGGACAGA
* *
208744855 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
208744901 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
208744945 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
208744970 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:208744950 original size:44 final size:45
Alignment explanation
Indices: 208744855--208744988 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
208744845 ACAGGACAGA
* *
208744855 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
208744901 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
208744945 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
208744989 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:208752276 original size:46 final size:44
Alignment explanation
Indices: 208752217--208752331 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
208752207 ACAGGACAGA
* *
208752217 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
208752263 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
208752307 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
208752332 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:208752312 original size:44 final size:45
Alignment explanation
Indices: 208752217--208752350 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
208752207 ACAGGACAGA
* *
208752217 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
208752263 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
208752307 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
208752351 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:208756582 original size:46 final size:44
Alignment explanation
Indices: 208756478--208756585 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
208756468 TGTCTTTGAC
** * * *
208756478 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
208756522 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
208756568 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
208756586 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:208761309 original size:53 final size:53
Alignment explanation
Indices: 208761228--208761378 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
208761218 CTTACACGGT
* *
208761228 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
208761283 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
208761336 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
208761379 GCACACTTGT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:208768814 original size:53 final size:53
Alignment explanation
Indices: 208768733--208768883 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
208768723 CTTACACGGT
* *
208768733 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
208768788 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
208768841 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
208768884 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:208772885 original size:46 final size:44
Alignment explanation
Indices: 208772781--208772888 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
208772771 TGTCTTTGAC
** * * *
208772781 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
208772825 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
208772871 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
208772889 TTTNNNNNNN
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:208774118 original size:40 final size:40
Alignment explanation
Indices: 208773980--208774162 Score: 162
Period size: 39 Copynumber: 4.7 Consensus size: 40
208773970 TCGAATGATG
* *
208773980 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * * * *
208774020 TCCGGACTAGGAT-CCGAAGGCA-TCGTACGAGATAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
208774059 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * *
208774098 CCCGGGTTAAGTCCCGAAGGCATTCGTGC-AGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
208774138 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
208774163 AGCGAGTCGT
Statistics
Matches: 113, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
38 9 0.08
39 64 0.57
40 39 0.35
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:208774348 original size:28 final size:29
Alignment explanation
Indices: 208774317--208774380 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
208774307 CTCGCACACC
*
208774317 AGTGCCGTAT-TTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
208774345 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
208774374 AGTGCCA
1 AGTGCCA
208774381 ATCTCGTCAC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 9 0.26
29 25 0.74
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:208775585 original size:25 final size:24
Alignment explanation
Indices: 208775549--208775605 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
208775539 TTTTTTTCCT
208775549 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* * *
208775574 TTTCTTTTTTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
208775598 TATTCTTT
1 T-TTCTTT
208775606 CTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:208782236 original size:29 final size:29
Alignment explanation
Indices: 208782204--208782276 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
208782194 CTTCGAGCTC
* *
208782204 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
208782233 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
208782262 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
208782277 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:208783476 original size:25 final size:24
Alignment explanation
Indices: 208783448--208783504 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
208783438 TTTTTTTCCT
208783448 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* * *
208783473 TTTCTTTTTTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
208783497 TATTCTTT
1 T-TTCTTT
208783505 CTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 5 0.18
25 23 0.82
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:208788584 original size:40 final size:39
Alignment explanation
Indices: 208788538--208788736 Score: 218
Period size: 39 Copynumber: 5.1 Consensus size: 39
208788528 GCTACTCGTT
* * ** *
208788538 CAAATGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* * *
208788578 CAAATGCCTTCGGGACTTAACCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* * *
208788618 CGAATGCCTTCGGGCTTAGCCCGGATATCATAGCTCACA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* *
208788657 CAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * * *
208788696 CAATTGCCTTCGGGCTTATCCTGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
208788735 CA
1 CA
208788737 TTCATACACA
Statistics
Matches: 137, Mismatches: 22, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
39 92 0.67
40 45 0.33
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:208791159 original size:27 final size:27
Alignment explanation
Indices: 208791129--208791208 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
208791119 AATAATTTTT
**
208791129 TCCTAAACTAGACATATTTAAATTATA
1 TCCTAAACTAGACATATTTAAAACATA
*
208791156 TCCTAAACTAGACACA-TTAAAACATA
1 TCCTAAACTAGACATATTTAAAACATA
* *
208791182 TACTAATA-TAAGACATATTTAATACAT
1 TCCTAA-ACT-AGACATATTTAAAACAT
208791209 TAAATTAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
26 14 0.32
27 22 0.50
28 8 0.18
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (27 bp):
TCCTAAACTAGACATATTTAAAACATA
Found at i:208796753 original size:29 final size:29
Alignment explanation
Indices: 208796721--208796852 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
208796711 ATAGTGAATC
208796721 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
208796750 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
208796780 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
208796809 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
208796838 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
208796853 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:208796862 original size:59 final size:59
Alignment explanation
Indices: 208796721--208796852 Score: 248
Period size: 59 Copynumber: 2.3 Consensus size: 59
208796711 ATAGTGAATC
208796721 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
*
208796780 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
208796838 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
208796853 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 24 0.33
59 48 0.67
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:208807390 original size:40 final size:39
Alignment explanation
Indices: 208807225--208807408 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
208807215 AAATTGAATG
* * *
208807225 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
208807265 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
208807305 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
208807345 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
208807384 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
208807409 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:208807433 original size:80 final size:81
Alignment explanation
Indices: 208807265--208807453 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
208807255 GCTGGAAATT
* * * *
208807265 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
208807330 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
208807346 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
208807409 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
208807425 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
208807454 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:208812038 original size:40 final size:39
Alignment explanation
Indices: 208811857--208812008 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
208811847 AATGTTCGAG
208811857 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
208811896 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
208811935 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
208811974 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
208812009 GGTTACCATA
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 90 0.85
40 16 0.15
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:208817132 original size:49 final size:49
Alignment explanation
Indices: 208817072--208817376 Score: 483
Period size: 49 Copynumber: 6.3 Consensus size: 49
208817062 GTATGAGATA
208817072 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
208817121 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
208817170 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
208817219 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
208817268 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
208817315 TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
208817362 TATAAATGTGATAAG
1 TATATATGTGATAAG
208817377 TCCCGAAGGG
Statistics
Matches: 243, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 56 0.23
49 187 0.77
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:208823015 original size:48 final size:48
Alignment explanation
Indices: 208822943--208823166 Score: 208
Period size: 48 Copynumber: 4.8 Consensus size: 48
208822933 AAGGTAGGAC
* ** * *
208822943 GCCAATGCCATATCCTGGATATGGTCTTTCATGGGATCACATATCGAT
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGAT
* * ** *
208822991 GCCAATGCCATGTCCCCGACATGGTCTTACATGGAATCGTAGATCGAT
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGAT
* * ***
208823039 GCCAATGCCATGTCCCAGCCATGGTGTTACACAAGATCACATATCGAT
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGAT
* * ** *
208823087 GTCGAT---A-G-CCCAG-CTATGGTCTTACATGAAATTACATATCGAT
1 GCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATCGAT
*
208823130 GCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAT
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
208823167 TGCACATAAC
Statistics
Matches: 138, Mismatches: 31, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
42 1 0.01
43 31 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 101 0.73
49 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
GCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGAT
Found at i:208826048 original size:81 final size:81
Alignment explanation
Indices: 208825959--208826185 Score: 305
Period size: 81 Copynumber: 2.8 Consensus size: 81
208825949 AATTCAGCTA
* * * * * *
208825959 TATATATGGCACTTAGTGCGTGATTCGACATAGCTCCGGCTATATATCACACTTAGTGTGCGAGA
1 TATATATGGCACTTAGTGTGAGATTCGAAATAGCTTCGGCTATATATCGCACTTAGTGTGCAAGA
*
208826024 TCGAGATGGCTTCTGC
66 TCGAGATAGCTTCTGC
* * * *
208826040 TATATATGGCACTTAGTGTGCGATCCGAAATAGCTTCGACTATATATGGCACTTAGTGTGCAAGA
1 TATATATGGCACTTAGTGTGAGATTCGAAATAGCTTCGGCTATATATCGCACTTAGTGTGCAAGA
208826105 TCGAGATAGCTTCTGC
66 TCGAGATAGCTTCTGC
* **
208826121 TATATATGGCACTT-GTGTGAGATTTGTGATAGCTTCGGCTATATA-CGGCACTTAGTGTGCAAG
1 TATATATGGCACTTAGTGTGAGATTCGAAATAGCTTCGGCTATATATC-GCACTTAGTGTGCAAG
208826184 AT
65 AT
208826186 ATCGAGAATT
Statistics
Matches: 128, Mismatches: 17, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
80 43 0.34
81 85 0.66
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (81 bp):
TATATATGGCACTTAGTGTGAGATTCGAAATAGCTTCGGCTATATATCGCACTTAGTGTGCAAGA
TCGAGATAGCTTCTGC
Found at i:208826053 original size:41 final size:41
Alignment explanation
Indices: 208825959--208826185 Score: 243
Period size: 41 Copynumber: 5.6 Consensus size: 41
208825949 AATTCAGCTA
* * *
208825959 TATATATGGCACTTA--GTGCGTGATTCGACATAGCTCCGGC
1 TATATATGGCACTTAGTGTGCGAGA-TCGAGATAGCTTCGGC
** * *
208825999 TATATATCACACTTAGTGTGCGAGATCGAGATGGCTTCTGC
1 TATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGC
* *
208826040 TATATATGGCACTTAGTGTGC--GATCCGAAATAGCTTCGAC
1 TATATATGGCACTTAGTGTGCGAGAT-CGAGATAGCTTCGGC
* *
208826080 TATATATGGCACTTAGTGTGCAAGATCGAGATAGCTTCTGC
1 TATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGC
* *
208826121 TATATATGGCACTT-GTGT--GAGATTTGTGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGAGA-TCGAGATAGCTTCGGC
* *
208826160 TATATACGGCACTTAGTGTGCAAGAT
1 TATATATGGCACTTAGTGTGCGAGAT
208826186 ATCGAGAATT
Statistics
Matches: 156, Mismatches: 22, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
38 3 0.02
39 29 0.19
40 53 0.34
41 58 0.37
42 13 0.08
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (41 bp):
TATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCGGC
Found at i:208836099 original size:40 final size:40
Alignment explanation
Indices: 208836044--208836293 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
208836034 AACATTGGAA
208836044 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
208836084 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
208836124 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
208836164 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
208836204 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
208836243 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
208836284 CTATATCCGG
1 ATATATCCGG
208836294 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:208844274 original size:40 final size:40
Alignment explanation
Indices: 208844219--208844428 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
208844209 AACATTGGAA
208844219 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
208844259 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
208844299 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
208844339 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
208844378 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
208844419 CTATATCCGG
1 ATATATCCGG
208844429 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:208849433 original size:40 final size:40
Alignment explanation
Indices: 208849348--208849498 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
208849338 AATTGAATGA
* * *
208849348 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
208849388 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
208849429 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
208849468 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
208849499 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:208849512 original size:40 final size:40
Alignment explanation
Indices: 208849385--208849514 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
208849375 ATGCTGGAAA
* * * *
208849385 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
208849425 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
208849465 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
208849505 TTATATCCGG
1 TTATATCCGG
208849515 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:208855599 original size:40 final size:40
Alignment explanation
Indices: 208855544--208855753 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
208855534 AACATTGGAA
208855544 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
208855584 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
208855624 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
208855664 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
208855703 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
208855744 CTATATCCGG
1 ATATATCCGG
208855754 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:208865939 original size:79 final size:81
Alignment explanation
Indices: 208865838--208866022 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
208865828 ACGACTCGCT
** * *
208865838 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
208865901 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
208865918 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
208865982 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
208865998 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
208866023 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:208866022 original size:40 final size:39
Alignment explanation
Indices: 208865831--208866022 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
208865821 GGATATAACG
* ** * *
208865831 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
208865871 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
208865911 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
208865950 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
208865990 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
208866023 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:208873969 original size:79 final size:81
Alignment explanation
Indices: 208873868--208874052 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
208873858 ACGACTCGCT
** * *
208873868 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
208873931 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
208873948 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
208874012 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
208874028 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
208874053 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:208874052 original size:40 final size:39
Alignment explanation
Indices: 208873861--208874052 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
208873851 GGATATAACG
* ** * *
208873861 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
208873901 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
208873941 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
208873980 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
208874020 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
208874053 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:208882008 original size:79 final size:81
Alignment explanation
Indices: 208881907--208882091 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
208881897 ACGACTCGCT
** * *
208881907 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
208881970 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
208881987 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
208882051 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
208882067 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
208882092 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:208882091 original size:40 final size:39
Alignment explanation
Indices: 208881900--208882091 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
208881890 GGATATAACG
* ** * *
208881900 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
208881940 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
208881980 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
208882019 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
208882059 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
208882092 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:208892097 original size:40 final size:40
Alignment explanation
Indices: 208892043--208892229 Score: 211
Period size: 40 Copynumber: 4.8 Consensus size: 40
208892033 CGAATGGTGT
* * * * * *
208892043 CCGGGCTAAGTCCCGAAGGC-TTTTTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
208892083 CCGGGTCAATTCCCGAAGGCATTTGTGCTAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
208892123 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
208892163 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
208892202 TCGGG--AATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
208892230 ATCACTATAA
Statistics
Matches: 129, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
37 20 0.16
39 8 0.06
40 95 0.74
41 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:208896374 original size:39 final size:39
Alignment explanation
Indices: 208896343--208896444 Score: 141
Period size: 39 Copynumber: 2.6 Consensus size: 39
208896333 CCGGACTAGA
*
208896343 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG
1 TCCGAAGGCATTCGTGCGAGTTAAGAAATCCGGGCTAAG
* * * * *
208896382 CCCGAAGGCATTTGTGCGAGTTACGAAACCCGGGTTAAG
1 TCCGAAGGCATTCGTGCGAGTTAAGAAATCCGGGCTAAG
208896421 TCCCGAAGGCATTCGTGCGAGTTA
1 T-CCGAAGGCATTCGTGCGAGTTA
208896445 CTATAACCGG
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
39 33 0.61
40 21 0.39
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (39 bp):
TCCGAAGGCATTCGTGCGAGTTAAGAAATCCGGGCTAAG
Found at i:208896439 original size:40 final size:39
Alignment explanation
Indices: 208896344--208896482 Score: 165
Period size: 40 Copynumber: 3.5 Consensus size: 39
208896334 CGGACTAGAT
* *
208896344 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
* *
208896383 CCGAAGGCATTTGTGCGAGTTACGAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
208896423 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGG-TTAAGTC
* *
208896463 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
208896483 CGTTATATCC
Statistics
Matches: 87, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.38
40 50 0.57
41 4 0.05
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.23
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:208904764 original size:29 final size:29
Alignment explanation
Indices: 208904738--208904810 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
208904728 TTTTCAGCTT
* *
208904738 GCACACATAGTGTCATATTTTTCCAGCAC
1 GCACACTTAGTGCCATATTTTTCCAGCAC
*
208904767 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATTTTTCCAGCAC
208904796 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
208904811 ATCTTGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATTTTTCCAGCAC
Found at i:208909909 original size:71 final size:71
Alignment explanation
Indices: 208909825--208909988 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
208909815 CGATTTGTCT
208909825 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
208909890 CTTTCA
66 CTTTCA
* *
208909896 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
208909961 CTTTCA
66 CTTTCA
208909967 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
208909989 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:208910026 original size:71 final size:70
Alignment explanation
Indices: 208909825--208910022 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
208909815 CGATTTGTCT
* * * * *
208909825 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
208909890 CTTTCA
65 CTTTCA
* * * *
208909896 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
208909961 CTTTCA
65 CTTTCA
* *
208909967 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
208910023 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:208916954 original size:70 final size:71
Alignment explanation
Indices: 208916871--208917033 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
208916861 CGATTTGTCT
208916871 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
208916935 CTTTCA
66 CTTTCA
*
208916941 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
208917006 CTTTCA
66 CTTTCA
208917012 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
208917034 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:208917071 original size:71 final size:70
Alignment explanation
Indices: 208916871--208917067 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
208916861 CGATTTGTCT
* * * *
208916871 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
208916935 CTTTCA
65 CTTTCA
* * * *
208916941 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
208917006 CTTTCA
65 CTTTCA
* *
208917012 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
208917068 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:208922128 original size:29 final size:27
Alignment explanation
Indices: 208922072--208922142 Score: 106
Period size: 29 Copynumber: 2.6 Consensus size: 27
208922062 TTTTCAGCTT
* *
208922072 GCACACATAGTGTCATTTTTCCAGCAC
1 GCACACTTAGTGCCATTTTTCCAGCAC
208922099 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCAT-T-TTTCCAGCAC
208922128 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
208922143 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 14 0.35
28 1 0.03
29 25 0.62
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCCATTTTTCCAGCAC
Found at i:208926290 original size:39 final size:38
Alignment explanation
Indices: 208926241--208926354 Score: 156
Period size: 39 Copynumber: 2.9 Consensus size: 38
208926231 TATCACGATT
*
208926241 TGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAAC
* *
208926280 TGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCTAC
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAAC
*
208926319 TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
1 T-GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAA
208926355 TTTCCAGCAT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 38 0.57
40 29 0.43
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (38 bp):
TGCACAATGCCTTCGGGTCTTAGCCCGGATATAACAAC
Found at i:208926348 original size:40 final size:40
Alignment explanation
Indices: 208926210--208926392 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
208926200 CCGCACCAAG
* * * * * * * *
208926210 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
208926250 GCCTTCGGGTCTTAGCCCGGATTTAACAACT-GCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
208926289 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * * *
208926329 GCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
208926369 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
208926393 CATTCAATTT
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 35 0.29
40 86 0.71
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:208934324 original size:39 final size:38
Alignment explanation
Indices: 208934275--208934388 Score: 156
Period size: 39 Copynumber: 2.9 Consensus size: 38
208934265 TATCACGATT
*
208934275 TGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAAC
* *
208934314 TGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCTAC
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAAC
*
208934353 TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
1 T-GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAA
208934389 TTTCAGCATA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 38 0.57
40 29 0.43
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (38 bp):
TGCACAATGCCTTCGGGTCTTAGCCCGGATATAACAAC
Found at i:208934382 original size:40 final size:37
Alignment explanation
Indices: 208934244--208934387 Score: 144
Period size: 40 Copynumber: 3.7 Consensus size: 37
208934234 CCGCACCAAG
* * **
208934244 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-AC-AACTGCAC-AAT
* *
208934284 GCCTTCGGGTCTTAGCCCGGATTTAACAACTGCACGAAT
1 GCCTTCGGGTCTTAACCCGGATAT-ACAACTGCAC-AAT
* *
208934323 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAACCCGGATATA-CAACT-GCACAA-T
208934363 GCCTTCGGGTCTTAACCCGGATATA
1 GCCTTCGGGTCTTAACCCGGATATA
208934388 ATTTCAGCAT
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 38 0.42
40 51 0.57
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (37 bp):
GCCTTCGGGTCTTAACCCGGATATACAACTGCACAAT
Found at i:208934421 original size:39 final size:40
Alignment explanation
Indices: 208934249--208934425 Score: 153
Period size: 39 Copynumber: 4.5 Consensus size: 40
208934239 CCAAGGCCTA
* * * * * * * *
208934249 CGGGACTTAACCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTACCTT
* * *
208934289 CGGGTCTTAGCCCGGATTTAACAACT-GCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCAC-AATTACCTT
* *
208934328 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTACCTT
* * * * *
208934368 CGGGTCTTAACCCGGATATAATTTC-AGCATAATTATCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTACCTT
*
208934407 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
208934426 CATTCAATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 63 0.54
40 53 0.46
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACTACTAGCACAATTACCTT
Found at i:208938476 original size:25 final size:25
Alignment explanation
Indices: 208938448--208938517 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
208938438 CTCTTTTAAT
*
208938448 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
208938473 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
208938498 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
208938518 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:208939418 original size:27 final size:27
Alignment explanation
Indices: 208939388--208939485 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
208939378 GTAAATCTAC
208939388 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
208939415 AAACCAAAGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
*
208939441 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
208939471 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
208939486 TGGTAATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
26 1 0.02
27 33 0.53
28 7 0.11
29 20 0.32
30 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:208939492 original size:27 final size:26
Alignment explanation
Indices: 208939475--208939601 Score: 146
Period size: 27 Copynumber: 4.7 Consensus size: 26
208939465 TTTTGTAAAT
208939475 CAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
** * * *
208939501 TTGAGGGTATTTCGATAATTTCACAAA
1 CAG-GGGTATTTTGGTAATTTTACAAA
*
208939528 CCAGTGGTATTTTGGTAATTTTACAAA
1 -CAGGGGTATTTTGGTAATTTTACAAA
*
208939555 CTAGGGGTGTTTTGGTAATTTTACAAA
1 C-AGGGGTATTTTGGTAATTTTACAAA
*
208939582 CTAGGAGTATTTTGGTAATT
1 C-AGGGGTATTTTGGTAATT
208939602 CTATTCTACA
Statistics
Matches: 83, Mismatches: 15, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
26 2 0.02
27 80 0.96
28 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTTTACAAA
Found at i:208939493 original size:56 final size:54
Alignment explanation
Indices: 208939385--208939554 Score: 166
Period size: 54 Copynumber: 3.1 Consensus size: 54
208939375 TTGGTAAATC
* * *
208939385 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAAAGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCA-TAATTTTGTAAACCAGAGGTATTT-TGGTAATTTT
* * *
208939440 TAGAAAGTCAAGGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTC-ATAATTTTGTAAACCAGAGGTATTTTGGTAATTTT
** *** *
208939495 TACAAATTGAGGGTATTTCGATAATTTCACAAACCAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTC-ATAATTTTGTAAACCAGAGGTATTTTGGTAATTTT
208939549 TACAAA
1 TACAAA
208939555 CTAGGGGTGT
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
54 46 0.47
55 14 0.14
56 36 0.37
57 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCATAATTTTGTAAACCAGAGGTATTTTGGTAATTTT
Found at i:208939537 original size:54 final size:52
Alignment explanation
Indices: 208939450--208939601 Score: 169
Period size: 54 Copynumber: 2.8 Consensus size: 52
208939440 TAGAAAGTCA
* ** * *
208939450 AGGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCGATAATTTTACAAACCA-GGGTATTTTGGTAATTTTACAAACT
*
208939503 GAGGGTATTTCGATAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACT
1 -AGGGTATTTCGATAATTTTACAAACCAG-GGTATTTTGGTAATTTTACAAACT
* * * *
208939557 AGGGGTGTTTTGGTAATTTTACAAACTAGGAGTATTTTGGTAATT
1 A-GGGTATTTCGATAATTTTACAAACCAGG-GTATTTTGGTAATT
208939602 CTATTCTACA
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
53 3 0.04
54 81 0.96
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (52 bp):
AGGGTATTTCGATAATTTTACAAACCAGGGTATTTTGGTAATTTTACAAACT
Found at i:208939652 original size:26 final size:27
Alignment explanation
Indices: 208939623--208939720 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
208939613 GGGTATTTCA
* *
208939623 GTAATTTCA-CAATCGAGGGTAAAATG
1 GTAATTTCATAAATCGAGGGTAAAACG
* *
208939649 GTAATTTTATAAATTGAGGGTAAAACG
1 GTAATTTCATAAATCGAGGGTAAAACG
* *
208939676 GTAA-TTCTATAAATTGAGGGTAAAACT
1 GTAATTTC-ATAAATCGAGGGTAAAACG
208939703 GTAA-TTCTATAAATCGAG
1 GTAATTTC-ATAAATCGAG
208939721 AGTACTTTGG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
26 10 0.16
27 53 0.84
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (27 bp):
GTAATTTCATAAATCGAGGGTAAAACG
Found at i:208939667 original size:27 final size:27
Alignment explanation
Indices: 208939637--208939716 Score: 126
Period size: 27 Copynumber: 3.0 Consensus size: 27
208939627 TTTCACAATC
*
208939637 GAGGGTAAAATGGTAATTTTATAAATT
1 GAGGGTAAAATGGTAATTCTATAAATT
*
208939664 GAGGGTAAAACGGTAATTCTATAAATT
1 GAGGGTAAAATGGTAATTCTATAAATT
208939691 GAGGGTAAAACT-GTAATTCTATAAAT
1 GAGGGTAAAA-TGGTAATTCTATAAAT
208939717 CGAGAGTACT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTATAAATT
Found at i:208939749 original size:54 final size:53
Alignment explanation
Indices: 208939623--208939749 Score: 123
Period size: 54 Copynumber: 2.4 Consensus size: 53
208939613 GGGTATTTCA
* * * *
208939623 GTAATTTCACAATCGAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACG
1 GTAATTTTACAATCGAGGGTAAAATGGTAATTCTATAAATCGAGAGTAAAACG
* ****
208939676 GTAATTCTATA-AATTGAGGGTAAAACT-GTAATTCTATAAATCGAGAGTACTTTG
1 GTAATT-T-TACAATCGAGGGTAAAA-TGGTAATTCTATAAATCGAGAGTAAAACG
208939730 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAA-TCGAGGG
208939750 CATTTCAATA
Statistics
Matches: 59, Mismatches: 10, Indels: 9
0.76 0.13 0.12
Matches are distributed among these distances:
52 2 0.03
53 9 0.15
54 46 0.78
55 2 0.03
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAATGGTAATTCTATAAATCGAGAGTAAAACG
Found at i:208940459 original size:12 final size:12
Alignment explanation
Indices: 208940442--208940470 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
208940432 GCAAGAGCCA
208940442 AGGCTTGAACCC
1 AGGCTTGAACCC
208940454 AGGCTTGAACCC
1 AGGCTTGAACCC
208940466 AGGCT
1 AGGCT
208940471 CCCATACAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (12 bp):
AGGCTTGAACCC
Found at i:208941838 original size:38 final size:39
Alignment explanation
Indices: 208941796--208941878 Score: 116
Period size: 38 Copynumber: 2.2 Consensus size: 39
208941786 ACCAAAATGT
*
208941796 AACAGGGGCACGTAAGTGTG-TCCAGAGGTA-AAAAGTAC
1 AACAGGGGCACATAAGTGTGAT-CAGAGGTACAAAAGTAC
* *
208941834 AACAGGGGCACATAAGTGTGATCAGGGGTACCAAAGTAC
1 AACAGGGGCACATAAGTGTGATCAGAGGTACAAAAGTAC
208941873 AACAGG
1 AACAGG
208941879 TGTGATTAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
38 26 0.65
39 14 0.35
ACGTcount: A:0.37, C:0.17, G:0.31, T:0.14
Consensus pattern (39 bp):
AACAGGGGCACATAAGTGTGATCAGAGGTACAAAAGTAC
Found at i:208941963 original size:39 final size:39
Alignment explanation
Indices: 208941886--208941963 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
208941876 AGGTGTGATT
* *
208941886 AGGGGTACCAAAGTACAATAGGGACACGTAATTACGATC
1 AGGGGTACCAAAGTACAACAGGGACACGTAAGTACGATC
* * * *
208941925 AGGGGTACCGAAGTACAACAGGGGCATGTAAGTGCGATC
1 AGGGGTACCAAAGTACAACAGGGACACGTAAGTACGATC
208941964 TGGGTATAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.17
Consensus pattern (39 bp):
AGGGGTACCAAAGTACAACAGGGACACGTAAGTACGATC
Found at i:208944383 original size:28 final size:28
Alignment explanation
Indices: 208944305--208944383 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
208944295 GAATCATTCG
** * *
208944305 ATATTTCATACACTAAGTGCTAGTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
208944333 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
208944361 ATATTTCGCACACTAAGTGCCAT
1 ATATTTCGCACACTAAGTGCCAT
208944384 ATTTGATGTC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:208944459 original size:40 final size:41
Alignment explanation
Indices: 208944415--208944502 Score: 117
Period size: 41 Copynumber: 2.2 Consensus size: 41
208944405 GTGTTGTACA
* *
208944415 TAGCCGAAGCTAT-CTCAAAT-CGCACACTAGGTGCCAAATT
1 TAGCCGAAGCTATAC-CAAATCCGCACAATAAGTGCCAAATT
*
208944455 TAGCCGAAGCTATACCAAATCCGCACAATAAGTGCCATATT
1 TAGCCGAAGCTATACCAAATCCGCACAATAAGTGCCAAATT
*
208944496 TAACCGA
1 TAGCCGA
208944503 TATATCATCA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
40 18 0.43
41 24 0.57
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (41 bp):
TAGCCGAAGCTATACCAAATCCGCACAATAAGTGCCAAATT
Found at i:208962780 original size:15 final size:15
Alignment explanation
Indices: 208962745--208962774 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
208962735 TTAACAAAAG
208962745 TATGAGAAATTTGAA
1 TATGAGAAATTTGAA
208962760 TATGAGAAATTTGAA
1 TATGAGAAATTTGAA
208962775 ACTGAGTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (15 bp):
TATGAGAAATTTGAA
Found at i:208962957 original size:23 final size:23
Alignment explanation
Indices: 208962931--208962982 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
208962921 TTTTTAGATT
* *
208962931 TTTTTACATATATATATTTTCAA
1 TTTTTAAAAATATATATTTTCAA
* * *
208962954 TTTTTAAAAATTTTTATTTTTAA
1 TTTTTAAAAATATATATTTTCAA
208962977 TTTTTA
1 TTTTTA
208962983 TTTTTAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTTTAAAAATATATATTTTCAA
Found at i:208962980 original size:13 final size:13
Alignment explanation
Indices: 208962962--208962989 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
208962952 AATTTTTAAA
208962962 AATTTTTATTTTT
1 AATTTTTATTTTT
208962975 AATTTTTATTTTT
1 AATTTTTATTTTT
208962988 AA
1 AA
208962990 AAATATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
AATTTTTATTTTT
Found at i:208963039 original size:20 final size:20
Alignment explanation
Indices: 208963016--208963053 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
208963006 TTGTTCATAT
*
208963016 TTTTAATAATTTATATTTAG
1 TTTTAATAATTTAAATTTAG
*
208963036 TTTTAATATTTTAAATTT
1 TTTTAATAATTTAAATTT
208963054 TTATTAGGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTTAATAATTTAAATTTAG
Found at i:208979079 original size:40 final size:39
Alignment explanation
Indices: 208979034--208979163 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
208979024 CGGAATACAA
208979034 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
208979074 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
208979114 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
208979154 CCGGATATAA
1 CCGGATATAA
208979164 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:208982006 original size:40 final size:39
Alignment explanation
Indices: 208981961--208982090 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
208981951 CGGAATACAA
208981961 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
208982001 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
208982041 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
208982081 CCGGATATAA
1 CCGGATATAA
208982091 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:208987307 original size:49 final size:49
Alignment explanation
Indices: 208987251--208987464 Score: 367
Period size: 49 Copynumber: 4.4 Consensus size: 49
208987241 TACATATATG
* * *
208987251 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
208987300 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
208987349 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
208987398 TGTGAT-AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
208987446 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
208987465 TAATGTAAAA
Statistics
Matches: 159, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
48 48 0.30
49 111 0.70
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:208987451 original size:97 final size:98
Alignment explanation
Indices: 208987251--208987469 Score: 368
Period size: 97 Copynumber: 2.2 Consensus size: 98
208987241 TACATATATG
*
208987251 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
208987316 GGCCGATGTGATGAATGTGAAAGTGTATGTATA
66 GGCCGATGTGATGAATGTGAAAGTGTATGTATA
* * * *
208987349 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGAT-AGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
208987413 GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
66 GGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
208987446 TGTGATAAGGCCTAATGGCTAATG
1 TGTGATAAGGCCTAATGGCCAATG
208987470 TAAAATATAT
Statistics
Matches: 112, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
97 62 0.55
98 50 0.45
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (98 bp):
TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:208987616 original size:37 final size:37
Alignment explanation
Indices: 208987566--208987650 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
208987556 GGAATATGTT
*
208987566 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
208987603 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
208987640 CCGGGTAAGAC
1 CCGGGTAAGAC
208987651 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:208989751 original size:29 final size:29
Alignment explanation
Indices: 208989692--208989842 Score: 263
Period size: 29 Copynumber: 5.3 Consensus size: 29
208989682 TGGGCATTAC
*
208989692 GTGTGCGAGATCAG--ATTGAGGCACTAT
1 GTGTGCGAGATCAGTAATCGAGGCACTAT
208989719 GTGTGCGAGATCAGTAATCGAGGCACTAT
1 GTGTGCGAGATCAGTAATCGAGGCACTAT
208989748 GTGTGCGAGATCAGTAATCGAGGCACTAT
1 GTGTGCGAGATCAGTAATCGAGGCACTAT
208989777 GTGTGCGAGATCAGTAATCGAGGCACTAT
1 GTGTGCGAGATCAGTAATCGAGGCACTAT
*
208989806 GTGTGCGAGATCAGTAATC-AGGCACTGT
1 GTGTGCGAGATCAGTAATCGAGGCACTAT
208989834 GTGTGCGAG
1 GTGTGCGAG
208989843 TTTTTCAACA
Statistics
Matches: 120, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
27 14 0.12
28 17 0.14
29 89 0.74
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
GTGTGCGAGATCAGTAATCGAGGCACTAT
Found at i:208990423 original size:40 final size:41
Alignment explanation
Indices: 208990325--208990423 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
208990315 TTCGAATGGT
* ** * *
208990325 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
208990366 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
208990407 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
208990424 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:208993238 original size:48 final size:49
Alignment explanation
Indices: 208993145--208993454 Score: 536
Period size: 48 Copynumber: 6.4 Consensus size: 49
208993135 TACATATATG
* * * *
208993145 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
208993194 TGTGATAAGGCCTAATGGCCGATGT-GTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
208993242 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
208993291 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
208993340 TGTGAT-AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
208993388 TGTG-TGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
208993436 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
208993455 TAATGTAAAA
Statistics
Matches: 252, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
47 1 0.00
48 138 0.55
49 113 0.45
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:208993311 original size:97 final size:98
Alignment explanation
Indices: 208993145--208993454 Score: 545
Period size: 97 Copynumber: 3.2 Consensus size: 98
208993135 TACATATATG
* * * * *
208993145 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
208993210 GGCCGATGT-GTGAATGTGAAAGTGTATGTATA
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
208993242 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
208993307 GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
208993340 TGTGAT-AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTG-TGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
208993403 GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
208993436 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
208993455 TAATGTAAAA
Statistics
Matches: 205, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
96 50 0.24
97 126 0.61
98 29 0.14
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (98 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:208993509 original size:145 final size:146
Alignment explanation
Indices: 208993145--208993467 Score: 510
Period size: 145 Copynumber: 2.2 Consensus size: 146
208993135 TACATATATG
* * * *
208993145 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGTGA-AAATATGAAAGTGTATGTATATGTGATAAGGCCTAAT
208993210 GGCCGATGT-GTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
65 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
208993274 GTGAAAGTGTATGTATA
130 GTGAAAGTGTATGTATA
* * ** *
208993291 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGAT-AGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGT-GAAAATATGAAAGTGTATGTATATGTGATAAGGCCTAAT
208993355 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTG-TGAGGCCTAATGGCCGATGTGGTGAAT
65 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
208993419 GTGAAAGTGTATGTATA
130 GTGAAAGTGTATGTATA
*
208993436 TGTGATAAGGCCTAATGGCTAATGT-AAAATAT
1 TGTGATAAGGCCTAATGGCCAATGTGAAAATAT
208993468 ATGTGTGATA
Statistics
Matches: 164, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
143 4 0.02
145 84 0.51
146 75 0.46
147 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (146 bp):
TGTGATAAGGCCTAATGGCCAATGTGAAAATATGAAAGTGTATGTATATGTGATAAGGCCTAATG
GCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATG
TGAAAGTGTATGTATA
Found at i:208993606 original size:37 final size:37
Alignment explanation
Indices: 208993556--208993640 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
208993546 GGAATATGTT
*
208993556 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
208993593 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
208993630 CCGGGTAAGAC
1 CCGGGTAAGAC
208993641 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:209001500 original size:43 final size:44
Alignment explanation
Indices: 209001364--209001535 Score: 183
Period size: 43 Copynumber: 4.0 Consensus size: 44
209001354 ACAGAGGATC
* * * *
209001364 CGATATGTG-TTTTCGTGTAAGACCACGTCTGAGACATTGGCAT
1 CGATATTTGATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
* *
209001407 CGACT-TATGATTTACGTGTAAGACCATGTCTGGGACATTGACAT
1 CGA-TATTTGATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
* * * * *
209001451 TG-TATTTGATTTA-GTGTAAGACCCTGTTTTGGACAGTGGCAT
1 CGATATTTGATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
* *
209001493 CGATATTTGA-TTACATGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATTTGATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
209001536 TGTACGAGCT
Statistics
Matches: 105, Mismatches: 19, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
42 29 0.28
43 44 0.42
44 32 0.30
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (44 bp):
CGATATTTGATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
Found at i:209002933 original size:28 final size:28
Alignment explanation
Indices: 209002878--209003021 Score: 211
Period size: 28 Copynumber: 5.2 Consensus size: 28
209002868 AGCATGGCTG
* *
209002878 CCAG-AACAGATA-TTGTGACAGAGTCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
* * * *
209002904 CCTGATACAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
*
209002932 CCAGGAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
209002960 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
209002988 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
209003016 CCAGAA
1 CCAGAA
209003022 CGCTTCCTCC
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 3 0.03
27 7 0.07
28 95 0.90
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.18
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCAGAGCCA
Found at i:209005911 original size:40 final size:39
Alignment explanation
Indices: 209005820--209005930 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 39
209005810 ATAACCACGT
* *
209005820 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
209005860 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
*
209005900 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
209005931 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 57 0.92
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:209005954 original size:80 final size:79
Alignment explanation
Indices: 209005820--209005968 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
209005810 ATAACCACGT
* *
209005820 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCAAGAATGCCTTCGGG-CTTAGCC
209005885 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
209005900 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAG-AATAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCAAGAA-TGCCTTCGGGCTTAGC
209005963 CCGGAT
64 CCGGAT
209005969 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 16 0.27
80 44 0.73
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCAAGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:209016779 original size:46 final size:43
Alignment explanation
Indices: 209016636--209016771 Score: 132
Period size: 47 Copynumber: 3.0 Consensus size: 43
209016626 TAACCCGCTA
209016636 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * *
209016683 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
209016729 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
209016772 CCTAGTGACA
Statistics
Matches: 75, Mismatches: 8, Indels: 14
0.77 0.08 0.14
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 29 0.39
47 30 0.40
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:209017214 original size:30 final size:30
Alignment explanation
Indices: 209017180--209017239 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
209017170 ATTTAATACG
209017180 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
209017210 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
209017240 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:209024691 original size:29 final size:30
Alignment explanation
Indices: 209024659--209024717 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
209024649 ATTTAATACG
209024659 AACTTTGGAAAAATTACACTTTT-CCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
209024688 AACTTTTGCATAATTACATTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
209024718 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.39
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:209031284 original size:40 final size:40
Alignment explanation
Indices: 209031187--209031338 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
209031177 TCGAATGGTG
* * *
209031187 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
209031228 TCCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
209031268 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
209031308 TCCGGGCTAATTCCCGATGGCAATTGTGCGA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
209031339 ATCACTATAA
Statistics
Matches: 93, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 67 0.72
41 26 0.28
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:209031335 original size:80 final size:81
Alignment explanation
Indices: 209031188--209031338 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 81
209031178 CGAATGGTGT
* * *
209031188 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
209031253 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * * * * *
209031269 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGG-CTAATTCCCGATGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAAT
209031332 TGTGCGA
65 TGTGCGA
209031339 ATCACTATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
79 1 0.02
80 34 0.57
81 25 0.42
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:209031379 original size:80 final size:80
Alignment explanation
Indices: 209031224--209031380 Score: 172
Period size: 80 Copynumber: 2.0 Consensus size: 80
209031214 GCTAAGTGAC
* * * * * *
209031224 TAAATCCGGGTCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTCAACTCCCGAAGGCAATTGTGCGAATCACCAAAACCAGGCTAAGTCCCGAAGAC
* *
209031289 ATTCGTGCGAGTTAT
66 AATCGAGCGAGTTAT
* * * * * *
209031304 TAAATCCGGG-CTAATTCCCGATGGCAATTGTGCGAATCACTATAACCAGGCTATGTCCTGAAGA
1 TAAATCCGGGTC-AACTCCCGAAGGCAATTGTGCGAATCACCAAAACCAGGCTAAGTCCCGAAGA
209031368 CAATCGAGCGAGT
65 CAATCGAGCGAGT
209031381 CGCTATATCC
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
79 1 0.02
80 61 0.98
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (80 bp):
TAAATCCGGGTCAACTCCCGAAGGCAATTGTGCGAATCACCAAAACCAGGCTAAGTCCCGAAGAC
AATCGAGCGAGTTAT
Found at i:209034769 original size:29 final size:29
Alignment explanation
Indices: 209034736--209034800 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
209034726 GTGACGAGAT
209034736 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
209034765 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
209034794 CGGCACT
1 TGGCACT
209034801 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:209042573 original size:40 final size:40
Alignment explanation
Indices: 209042477--209042655 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
209042467 CGAATGGTGT
* * * *
209042477 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
209042518 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
209042558 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
209042598 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
209042638 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
209042656 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
40 89 0.78
41 25 0.22
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:209042616 original size:80 final size:80
Alignment explanation
Indices: 209042477--209042669 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
209042467 CGAATGGTGT
* * * *
209042477 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
209042542 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * * *
209042558 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
209042622 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * *
209042638 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
209042670 CGCTATATCC
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 68 0.72
81 25 0.27
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:209042676 original size:40 final size:40
Alignment explanation
Indices: 209042598--209042681 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
209042588 GTTATTAAAT
* * *
209042598 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
209042638 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
209042678 CCGG
1 CCGG
209042682 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:209047947 original size:46 final size:46
Alignment explanation
Indices: 209047784--209047956 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
209047774 ATTTGGGCAT
*
209047784 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
209047828 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
209047873 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
209047921 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
209047957 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:209050888 original size:15 final size:15
Alignment explanation
Indices: 209050868--209050936 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
209050858 GTATCTTGGG
209050868 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
209050883 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
209050898 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
209050913 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
209050928 TTTCTTTAT
1 TTTCTTTAT
209050937 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:209050937 original size:30 final size:30
Alignment explanation
Indices: 209050859--209050946 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
209050849 CATAGTATCG
* * * *
209050859 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
209050889 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
209050919 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
209050947 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Done.