Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 668 of 770
Found at i:209999154 original size:12 final size:12
Alignment explanation
Indices: 209999139--209999175 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
209999129 AAACAAAATA
209999139 AGATTGAAAAAG
1 AGATTGAAAAAG
209999151 AGATTGAAAAAG
1 AGATTGAAAAAG
**
209999163 AGAAGGAAAAAG
1 AGATTGAAAAAG
209999175 A
1 A
209999176 AAAAGAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.62, C:0.00, G:0.27, T:0.11
Consensus pattern (12 bp):
AGATTGAAAAAG
Found at i:210002621 original size:30 final size:30
Alignment explanation
Indices: 210002585--210002681 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
210002575 AGCTCACTCC
210002585 TAGCTCATA-TTCAGCTCACGGGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGGGCTAAACCT
* * *
210002615 TAGCTCAACTTCAGCTTA-GGAGTTTAACCT
1 TAGCTCAACTTCAGCTCACGG-GCTAAACCT
* * * *
210002645 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGGGCTAAACCT
210002675 TAGCTCA
1 TAGCTCA
210002682 TTTTAGTTTA
Statistics
Matches: 53, Mismatches: 11, Indels: 6
0.76 0.16 0.09
Matches are distributed among these distances:
29 3 0.06
30 49 0.92
31 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGGGCTAAACCT
Found at i:210004925 original size:43 final size:43
Alignment explanation
Indices: 210004865--210005067 Score: 344
Period size: 43 Copynumber: 4.8 Consensus size: 43
210004855 TTTATTGGAA
*
210004865 AAAAACGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
210004908 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
210004951 AGAAA-CGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
1 A-AAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
*
210004994 AGAAGCG-CGCTAAAGGTC-AGGCTTTTAG-GGCGTTTGT-GG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
210005033 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCG
210005068 CTTTTTCTAC
Statistics
Matches: 152, Mismatches: 3, Indels: 11
0.92 0.02 0.07
Matches are distributed among these distances:
39 8 0.05
40 20 0.13
41 20 0.13
42 17 0.11
43 84 0.55
44 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.34, T:0.23
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGG
Found at i:210011167 original size:57 final size:57
Alignment explanation
Indices: 210011094--210011205 Score: 170
Period size: 57 Copynumber: 2.0 Consensus size: 57
210011084 TATTAGTTAG
** * *
210011094 GTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTGA
1 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTGA
* *
210011151 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGT
1 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGT
210011206 AATTTATTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.46
Consensus pattern (57 bp):
GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTGA
Found at i:210011207 original size:9 final size:9
Alignment explanation
Indices: 210011106--210011218 Score: 118
Period size: 9 Copynumber: 12.2 Consensus size: 9
210011096 TATGTAAGTT
*
210011106 GTTATGTAC
1 GTTATGTAA
*
210011115 GTTATGTGA
1 GTTATGTAA
210011124 GTTATGTAA
1 GTTATGTAA
*
210011133 ATTATGTAA
1 GTTATGTAA
*
210011142 GTTATGTGA
1 GTTATGTAA
210011151 GTTATGTAA
1 GTTATGTAA
210011160 GTTGTTATGTAA
1 ---GTTATGTAA
*
210011172 ATTATGTAA
1 GTTATGTAA
* *
210011181 GTTATATGA
1 GTTATGTAA
210011190 GTTATGTAA
1 GTTATGTAA
210011199 GTTATGTAA
1 GTTATGTAA
* *
210011208 TTTATTTAA
1 GTTATGTAA
210011217 GT
1 GT
210011219 AATGATCAAT
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
9 76 0.89
12 9 0.11
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
GTTATGTAA
Found at i:210011218 original size:57 final size:57
Alignment explanation
Indices: 210011094--210011218 Score: 169
Period size: 57 Copynumber: 2.2 Consensus size: 57
210011084 TATTAGTTAG
** * * *
210011094 GTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTGA
1 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTAA
* *
210011151 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGTAA
1 GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTAA
* *
210011208 TTTATTTAAGT
1 GTTATGTAAGT
210011219 AATGATCAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.47
Consensus pattern (57 bp):
GTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTAA
Found at i:210011922 original size:241 final size:241
Alignment explanation
Indices: 210011262--210012172 Score: 1727
Period size: 240 Copynumber: 3.8 Consensus size: 241
210011252 TAGTTATAAA
*
210011262 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTATAGCTCGA
1 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
210011327 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACT
66 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACT
210011392 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
131 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
*
210011457 AATAGTAAATGAGTTGGATAGAATTTTTTTCAAGTATTTTTGATTT
196 AATAGTAAATGAGTTGGATAGAATTTTTTTCAAGTATTTTTGAATT
* *
210011503 TTTTAAGATTCATCATACG-CGCGTTGTTACACCTAGGGAGGATCCATTATATCTTATAGCTCGA
1 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
210011567 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACT
66 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACT
210011632 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
131 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
210011697 AATAGTAAATGAGTTGGATAGAATTTTTTTCAAGTATTTTTGAATT
196 AATAGTAAATGAGTTGGATAGAATTTTTTTCAAGTATTTTTGAATT
*
210011743 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACGGCTCGA
1 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
*
210011808 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTACAATAAACT
66 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACT
210011873 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
131 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
210011938 AATAGTAAATGAGTTGGATAGAA-TTTTTTCAAGTATTTTTGAATT
196 AATAGTAAATGAGTTGGATAGAATTTTTTTCAAGTATTTTTGAATT
*
210011983 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACGGCTCGA
1 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
*
210012048 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGCT
66 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACT
*
210012113 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
131 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAA
210012173 ATTAATTCAT
Statistics
Matches: 660, Mismatches: 9, Indels: 3
0.98 0.01 0.00
Matches are distributed among these distances:
240 447 0.68
241 213 0.32
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (241 bp):
TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACT
TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
AATAGTAAATGAGTTGGATAGAATTTTTTTCAAGTATTTTTGAATT
Found at i:210012168 original size:481 final size:481
Alignment explanation
Indices: 210011262--210012172 Score: 1725
Period size: 481 Copynumber: 1.9 Consensus size: 481
210011252 TAGTTATAAA
*
210011262 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTATAGCTCGA
1 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
210011327 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACT
66 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACT
210011392 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
131 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
*
210011457 AATAGTAAATGAGTTGGATAGAATTTTTTTCAAGTATTTTTGATTTTTTTAAGATTCATCATACG
196 AATAGTAAATGAGTTGGATAGAATTTTTTTCAAGTATTTTTGAATTTTTTAAGATTCATCATACG
*
210011522 CGCGTTGTTACACCTAGGGAGGATCCATTATATCTTATAGCTCGATATAAGGCAACCCGTCAGGT
261 CGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGT
210011587 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACTTGGAGAGAAGGTCAGCTATT
326 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACTTGGAGAGAAGGTCAGCTATT
*
210011652 GTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTCAATAGTAAATGAGTTGGATA
391 GTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATATTCAATAGTAAATGAGTTGGATA
210011717 GAATTTTTTTCAAGTATTTTTGAATT
456 GAATTTTTTTCAAGTATTTTTGAATT
*
210011743 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACGGCTCGA
1 TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
*
210011808 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTACAATAAACT
66 TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACT
210011873 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
131 TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
210011938 AATAGTAAATGAGTTGGATAGAA-TTTTTTCAAGTATTTTTGAATTTTTTAAGATTCATCATACG
196 AATAGTAAATGAGTTGGATAGAATTTTTTTCAAGTATTTTTGAATTTTTTAAGATTCATCATACG
* *
210012002 TGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACGGCTCGATATAAGGCAACCCGTCAGG
261 -CGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGG
*
210012067 TTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGCTTGGAGAGAAGGTCAGCTAT
325 TTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACTTGGAGAGAAGGTCAGCTAT
210012132 TGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
390 TGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAA
210012173 ATTAATTCAT
Statistics
Matches: 420, Mismatches: 9, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
480 40 0.10
481 380 0.90
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (481 bp):
TTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGA
TATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACT
TGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTATATGGTAATAAATATTC
AATAGTAAATGAGTTGGATAGAATTTTTTTCAAGTATTTTTGAATTTTTTAAGATTCATCATACG
CGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCAACCCGTCAGGT
TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAACTTGGAGAGAAGGTCAGCTATT
GTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAATATTCAATAGTAAATGAGTTGGATA
GAATTTTTTTCAAGTATTTTTGAATT
Found at i:210012232 original size:10 final size:10
Alignment explanation
Indices: 210012217--210012267 Score: 54
Period size: 10 Copynumber: 5.4 Consensus size: 10
210012207 AAATATAAAA
210012217 ACTTATTCAT
1 ACTTATTCAT
210012227 ACTTATTC--
1 ACTTATTCAT
** *
210012235 A-TTATAAAA
1 ACTTATTCAT
210012244 ACTTATTCAT
1 ACTTATTCAT
210012254 ACTTATTCAT
1 ACTTATTCAT
210012264 ACTT
1 ACTT
210012268 CAAATAATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
7 4 0.12
8 1 0.03
9 1 0.03
10 27 0.82
ACGTcount: A:0.35, C:0.18, G:0.00, T:0.47
Consensus pattern (10 bp):
ACTTATTCAT
Found at i:210012241 original size:27 final size:27
Alignment explanation
Indices: 210012210--210012263 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
210012200 TTGAATCAAA
210012210 TATAAAAACTTATTCATACTTATTCAT
1 TATAAAAACTTATTCATACTTATTCAT
210012237 TATAAAAACTTATTCATACTTATTCAT
1 TATAAAAACTTATTCATACTTATTCAT
210012264 ACTTCAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (27 bp):
TATAAAAACTTATTCATACTTATTCAT
Found at i:210012337 original size:23 final size:23
Alignment explanation
Indices: 210012311--210012359 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
210012301 GTTCAAGTTT
210012311 ATTTAAAGGGCT-CAAATTCATAC
1 ATTTAAAGGGCTGC-AATTCATAC
210012334 ATTTAAAGGGCTGCAATTCATAC
1 ATTTAAAGGGCTGCAATTCATAC
210012357 ATT
1 ATT
210012360 AGATTAATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 24 0.96
24 1 0.04
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (23 bp):
ATTTAAAGGGCTGCAATTCATAC
Found at i:210015848 original size:19 final size:19
Alignment explanation
Indices: 210015821--210015874 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
210015811 CGTCCACTCA
*
210015821 GAGTCTTCAATGGCAGTCG
1 GAGTCTTCAACGGCAGTCG
*
210015840 GATTCTTCAACGGCAGTCG
1 GAGTCTTCAACGGCAGTCG
210015859 GAGTCTTCAACGGCAG
1 GAGTCTTCAACGGCAG
210015875 AAGGATATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (19 bp):
GAGTCTTCAACGGCAGTCG
Found at i:210015920 original size:20 final size:20
Alignment explanation
Indices: 210015892--210015943 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
210015882 TTTTGATTTT
* **
210015892 GATTCGGGGAAATCTTTAGG
1 GATTAGGGGAAATAGTTAGG
210015912 GATTAGGGGAAA-AGTTAGG
1 GATTAGGGGAAATAGTTAGG
*
210015931 GATTTGGGGAAAT
1 GATTAGGGGAAAT
210015944 TTGGGTGGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.31, C:0.04, G:0.38, T:0.27
Consensus pattern (20 bp):
GATTAGGGGAAATAGTTAGG
Found at i:210016943 original size:15 final size:14
Alignment explanation
Indices: 210016902--210016945 Score: 61
Period size: 15 Copynumber: 3.0 Consensus size: 14
210016892 GAAATTTATT
*
210016902 TTTAGGGTTTACAAA
1 TTTAGGGTTTA-TAA
210016917 TTTAGGGTTTATAA
1 TTTAGGGTTTATAA
210016931 TTTAGGGTATTATAA
1 TTTAGGGT-TTATAA
210016946 GGGTTTAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.45
Consensus pattern (14 bp):
TTTAGGGTTTATAA
Found at i:210017147 original size:29 final size:29
Alignment explanation
Indices: 210017115--210017170 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
210017105 TAGCTTTAGA
*
210017115 TCATGGGTTATGATTTAGGGATTAGGCGG
1 TCATCGGTTATGATTTAGGGATTAGGCGG
*
210017144 TCATCGGTTATGATTTAGGGGTTAGGC
1 TCATCGGTTATGATTTAGGGATTAGGC
210017171 TTCATATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.20, C:0.09, G:0.36, T:0.36
Consensus pattern (29 bp):
TCATCGGTTATGATTTAGGGATTAGGCGG
Found at i:210017841 original size:81 final size:81
Alignment explanation
Indices: 210017694--210017910 Score: 260
Period size: 81 Copynumber: 2.7 Consensus size: 81
210017684 ATAATAAATA
* * * * * * * *
210017694 TTAGCGGCGTTTTTACA-AAAACGCCACTATAGCTCAACCTTTTGTGGCGTTTGGACCTAAAGCG
1 TTAGCGGCGTTTTGA-ATAAAACGCCACTATTGCTCAGCTTTTTGTGGCGTTTTGAACAAAAACG
210017758 CCACTA-TATCTCAGCTTT
65 CCACTATTA-CTCAG-TTT
* * *
210017776 TT-GCGGCGTTTTGAATAAAACGCCACTATTTCTCAGTTTTTTGCGGCGTTTTGAACAAAAACGC
1 TTAGCGGCGTTTTGAATAAAACGCCACTATTGCTCAGCTTTTTGTGGCGTTTTGAACAAAAACGC
210017840 CACTATTACTCAGTTT
66 CACTATTACTCAGTTT
* *
210017856 TTAGCGGCGTTTTGAATGAAAATGCCACTATTGCTCAGCTTTTAGTGGCGTTTTG
1 TTAGCGGCGTTTTGAAT-AAAACGCCACTATTGCTCAGCTTTTTGTGGCGTTTTG
210017911 TTTCAAACGC
Statistics
Matches: 115, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
80 6 0.05
81 73 0.63
82 36 0.31
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (81 bp):
TTAGCGGCGTTTTGAATAAAACGCCACTATTGCTCAGCTTTTTGTGGCGTTTTGAACAAAAACGC
CACTATTACTCAGTTT
Found at i:210017893 original size:41 final size:39
Alignment explanation
Indices: 210017694--210017910 Score: 197
Period size: 41 Copynumber: 5.4 Consensus size: 39
210017684 ATAATAAATA
* * **
210017694 TTAGCGGCGTTTTTACA-AAAACGCCACTATAGCTCAACCTT
1 TTAGCGGCGTTTTGA-ATAAAACGCCACTAT-TCTC-AGTTT
* * * *
210017735 TT-GTGGCGTTTGGACCTAAAGCGCCACTATATCTCAGCTTT
1 TTAGCGGCGTTTTGA-ATAAAACGCCACTAT-TCTCAG-TTT
210017776 TT-GCGGCGTTTTGAATAAAACGCCACTATTTCTCAGTTT
1 TTAGCGGCGTTTTGAATAAAACGCCACTA-TTCTCAGTTT
* *
210017815 TTTGCGGCGTTTTGAACAAAAACGCCACTATTACTCAGTTT
1 TTAGCGGCGTTTTGAA-TAAAACGCCACTATT-CTCAGTTT
* *
210017856 TTAGCGGCGTTTTGAATGAAAATGCCACTATTGCTCAGCTT
1 TTAGCGGCGTTTTGAAT-AAAACGCCACTATT-CTCAGTTT
*
210017897 TTAGTGGCGTTTTG
1 TTAGCGGCGTTTTG
210017911 TTTCAAACGC
Statistics
Matches: 150, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
39 5 0.03
40 44 0.29
41 101 0.67
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (39 bp):
TTAGCGGCGTTTTGAATAAAACGCCACTATTCTCAGTTT
Found at i:210025074 original size:40 final size:40
Alignment explanation
Indices: 210024930--210025075 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 40
210024920 AATTGAATGA
* * * * ** *
210024930 TATCCGGGCTAAGCCCCGAAGACAATCATGCTG-GAAATTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTC
* * *
210024970 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT--CATTC
210025011 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
210025050 TATCCGGGCTAAGACCCGAAGGCATT
1 TATCCGGGCTAAGACCCGAAGGCATT
210025076 TGAGCACATG
Statistics
Matches: 86, Mismatches: 13, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
38 1 0.01
39 5 0.06
40 77 0.90
41 3 0.03
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
Found at i:210025094 original size:40 final size:40
Alignment explanation
Indices: 210024967--210025096 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
210024957 ATGCTGGAAA
* * *
210024967 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
210025007 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * *
210025047 TTCTATCCGGGCTAAGACCCGAAGGCATTTGAGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
210025087 TTATATCCGG
1 TTATATCCGG
210025097 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:210025095 original size:80 final size:80
Alignment explanation
Indices: 210024929--210025096 Score: 187
Period size: 80 Copynumber: 2.1 Consensus size: 80
210024919 AAATTGAATG
* *
210024929 ATATCCGGGCTAAGCCCCGAAGACAATCATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
210024994 ATTGTGCTAGTGGCT
66 ATTGAGCTAATGGCT
* * * * ** *
210025009 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACAATCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
* *
210025073 ATTTGAGC-ACATGGTT
65 AATTGAGCTA-ATGGCT
210025089 ATATCCGG
1 ATATCCGG
210025097 TTATATTCCG
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 2 0.03
80 70 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGAGCTAATGGCT
Found at i:210033002 original size:40 final size:40
Alignment explanation
Indices: 210032917--210033067 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
210032907 AATTGAATGA
* * * **
210032917 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
210032957 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
210032998 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
210033037 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
210033068 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:210033081 original size:40 final size:40
Alignment explanation
Indices: 210032954--210033083 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
210032944 ATGCTGGAAA
* * *
210032954 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
210032994 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
210033034 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
210033074 TTATATCCGG
1 TTATATCCGG
210033084 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:210035789 original size:40 final size:40
Alignment explanation
Indices: 210035726--210035898 Score: 174
Period size: 40 Copynumber: 4.3 Consensus size: 40
210035716 GGCCTACGGA
* * *
210035726 CTTA-CCCGGATATCACGATTTGCACAAATGCCTTCGGGT
1 CTTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGT
* *
210035765 CTTAGCCCGGATTTAACAACTTGCACGAATGCCTTCGGGT
1 CTTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGT
* * * *
210035805 CTTAGCCCGGATATAGCTACTAGCACAATTGCCTTCGGGT
1 CTTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGT
* * * *
210035845 CTTAACCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGG
1 CTTAGCCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGT
210035885 CTTAGCCCGGATAT
1 CTTAGCCCGGATAT
210035899 CATTCAATTT
Statistics
Matches: 110, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 5 0.05
40 99 0.90
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (40 bp):
CTTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGT
Found at i:210043881 original size:40 final size:40
Alignment explanation
Indices: 210043822--210043990 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
210043812 CGGGACTTTA
* * *
210043822 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
210043862 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
210043902 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
210043942 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
210043982 CCCGGATAT
1 CCCGGATAT
210043991 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:210047083 original size:16 final size:16
Alignment explanation
Indices: 210047062--210047094 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
210047052 GCATGGGATA
210047062 AAAATATGTACAAATT
1 AAAATATGTACAAATT
210047078 AAAATATGTACAAATT
1 AAAATATGTACAAATT
210047094 A
1 A
210047095 CGGTTTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (16 bp):
AAAATATGTACAAATT
Found at i:210051490 original size:40 final size:40
Alignment explanation
Indices: 210051396--210051616 Score: 191
Period size: 40 Copynumber: 5.5 Consensus size: 40
210051386 TATTCGAATG
*
210051396 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACT
* * * * *
210051437 ATAACCAGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAG-TGACT
* * * *
210051477 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
* * *
210051517 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
* * * * *
210051557 ACATCCGGTCTAAGACCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGA-CT
* *
210051596 ATAT-CTGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
210051617 ATTTCTTGAG
Statistics
Matches: 143, Mismatches: 32, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
38 14 0.10
39 12 0.08
40 89 0.62
41 27 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACT
Found at i:210057961 original size:40 final size:40
Alignment explanation
Indices: 210057895--210058038 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
210057885 AAATTGAATG
* * *
210057895 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
210057934 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
210057974 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
210058014 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
210058039 TTCGTGCACG
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.19
40 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:210058059 original size:40 final size:40
Alignment explanation
Indices: 210057932--210058061 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
210057922 ATGCTGGAAA
* *
210057932 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
210057972 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
210058012 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
210058052 TTATATCCGG
1 TTATATCCGG
210058062 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:210060133 original size:40 final size:40
Alignment explanation
Indices: 210060042--210060152 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 40
210060032 ATAACCACGT
* *
210060042 GCACGAATGCCTTCGGGTCTTAGCCCAGATAGAATGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
210060082 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* *
210060122 GCAC-AATTGCCTTCGGGTTTTAACCCGGATA
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
210060153 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 57 0.92
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:210064881 original size:93 final size:93
Alignment explanation
Indices: 210064722--210064892 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
210064712 CGCCCTAAGT
* *
210064722 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
210064787 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
210064815 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
210064880 CGAGTTCGGATGC
66 CGAGTTCGGATGC
210064893 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:210064889 original size:46 final size:46
Alignment explanation
Indices: 210064717--210064889 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
210064707 TAACCCGCCC
* * * *
210064717 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
210064763 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
210064811 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
210064856 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
210064890 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:210072237 original size:46 final size:46
Alignment explanation
Indices: 210072165--210072335 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
210072155 CGCCCCTAAG
* * *
210072165 TGAACTCGGACTCAACTCAACAAGTTCGGGTGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
* * * * **
210072211 TGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG-TTAGCATCCAT-AAA
* ** * *
210072258 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
210072304 TGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG
210072336 CTCAACCATC
Statistics
Matches: 99, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 64 0.65
47 35 0.35
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGTTAGCATCCATAAA
Found at i:210072284 original size:93 final size:93
Alignment explanation
Indices: 210072166--210072336 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
210072156 GCCCCTAAGT
*** *
210072166 GAACTCGGACTCAACTCAACAAGTTCGGGTGTTCGCATCCATAAATGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
210072231 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
210072259 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
210072324 CGAGTTCGGATGC
66 CGAGTTCGGATGC
210072337 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:210074764 original size:30 final size:30
Alignment explanation
Indices: 210074728--210074887 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
210074718 GACAAGATTG
* * * * *
210074728 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
210074758 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
210074786 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
210074815 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
210074845 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
210074874 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
210074888 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:210074855 original size:59 final size:57
Alignment explanation
Indices: 210074728--210074887 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
210074718 GACAAGATTG
* * * * * *
210074728 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
210074786 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
210074845 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
210074888 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:210085994 original size:30 final size:30
Alignment explanation
Indices: 210085958--210086116 Score: 202
Period size: 28 Copynumber: 5.5 Consensus size: 30
210085948 GACAAGATTG
* * * *
210085958 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTTAAAATTATATA
**
210085988 GCACTAAGTGTGCGAG-TT-TGATTATATA
1 GCACTAAGTGTGCGAGCTTAAAATTATATA
*
210086016 GCACTAAGTGTGCGAGC-TGAAA-TATATA
1 GCACTAAGTGTGCGAGCTTAAAATTATATA
*
210086044 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTTAAAATTATATA
*
210086074 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTTAAAATTATATA
210086103 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
210086117 GATTCACTAT
Statistics
Matches: 116, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
28 46 0.40
29 26 0.22
30 44 0.38
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTTAAAATTATATA
Found at i:210086070 original size:58 final size:57
Alignment explanation
Indices: 210085958--210086116 Score: 214
Period size: 58 Copynumber: 2.8 Consensus size: 57
210085948 GACAAGATTG
* * * * * *
210085958 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
210086016 GCACTAAGTGTGCGAGCTG-AAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
210086074 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
210086117 GATTCACTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
55 2 0.02
56 20 0.22
57 3 0.03
58 43 0.47
59 23 0.25
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:210102085 original size:40 final size:40
Alignment explanation
Indices: 210102040--210102206 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
210102030 CGGAATATAA
210102040 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
210102080 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
210102120 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
210102160 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
210102199 CCGGATAT
1 CCGGATAT
210102207 TATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:210118167 original size:40 final size:39
Alignment explanation
Indices: 210118109--210118330 Score: 155
Period size: 40 Copynumber: 5.6 Consensus size: 39
210118099 GGATATAGCG
* * * *
210118109 ACTCGCTCGATTGTCTTCGGGACATAGCCTGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCTGGTT-TAGTA
* *
210118149 ATTCGCACAATTGCCTTCGGGA-ATTAGCCTGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCTGG-TTTAGTA
* * * *
210118189 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCTGG-TTTAGTA
* * * * *
210118229 ACTCGCACAAATGCCTTCGGGA-GTTGACCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACATAG-CCTGG-TTTAGTA
* * * *
210118269 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCTGG-TTTAGTA
*
210118309 ACTCGCACAAATGCCTTCGGGA
1 ACTCGCACAATTGCCTTCGGGA
210118331 GTTGACCCGG
Statistics
Matches: 148, Mismatches: 25, Indels: 18
0.77 0.13 0.09
Matches are distributed among these distances:
39 6 0.04
40 135 0.91
41 7 0.05
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCTGGTTTAGTA
Found at i:210118235 original size:80 final size:80
Alignment explanation
Indices: 210118151--210118381 Score: 356
Period size: 80 Copynumber: 2.9 Consensus size: 80
210118141 TTATAGTGAT
* * *
210118151 TCGCACAATTGCCTTCGGGAATT-AGCCTGGATTTAATAACTCGCACGAATGCCTTCGGGACTTA
1 TCGCACAAATGCCTTCGGGAGTTGA-CCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTA
210118215 ACCCGGTTTTGGTAAC
65 ACCCGGTTTTGGTAAC
210118231 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAA
1 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAA
210118296 CCCGGTTTTGGTAAC
66 CCCGGTTTTGGTAAC
* * * * *
210118311 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
1 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAATAAC-TCGCACGAATGCCTTCGGGACTTA
*
210118376 GCCCGG
65 ACCCGG
210118382 ACACCATTCG
Statistics
Matches: 140, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
80 113 0.81
81 27 0.19
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAA
CCCGGTTTTGGTAAC
Found at i:210118370 original size:41 final size:40
Alignment explanation
Indices: 210118151--210118382 Score: 275
Period size: 40 Copynumber: 5.8 Consensus size: 40
210118141 TTATAGTGAT
* * * * *
210118151 TCGCACAATTGCCTTCGGGAATTAGCCTGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
210118191 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
210118231 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
210118271 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
210118311 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
* * *
210118351 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGACTTAACCCGGA
210118383 CACCATTCGA
Statistics
Matches: 160, Mismatches: 31, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
40 134 0.84
41 26 0.16
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
Found at i:210119099 original size:2 final size:2
Alignment explanation
Indices: 210119092--210119117 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
210119082 ATGTGCAAAC
210119092 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
210119118 GCTAGAGCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:210135104 original size:41 final size:40
Alignment explanation
Indices: 210135051--210135220 Score: 152
Period size: 41 Copynumber: 4.2 Consensus size: 40
210135041 AGTCCGACTC
*
210135051 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
210135090 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * * *
210135130 TTATGACACTGGCTCCAAAAAGCCCTTCTAAACTAAGTTCGGTTA
1 TTA-GACACTGGCT-C-AAAAGCCCTTCGAGACCAAGCTCGG--A
210135175 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
210135214 TTTAGAC
1 -TTAGAC
210135221 CCCGATTAGC
Statistics
Matches: 105, Mismatches: 12, Indels: 26
0.73 0.08 0.18
Matches are distributed among these distances:
39 5 0.05
40 17 0.16
41 51 0.49
42 19 0.18
43 9 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:210143444 original size:41 final size:40
Alignment explanation
Indices: 210143391--210143560 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
210143381 AGTCCGACTC
*
210143391 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
210143430 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
210143470 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
210143515 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
210143554 TTTAGAC
1 -TTAGAC
210143561 CCCGATTAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:210155467 original size:41 final size:41
Alignment explanation
Indices: 210155422--210155539 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
210155412 TGAAAGATAA
210155422 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
210155463 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
210155493 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
210155534 ATGTAG
1 ATGTAG
210155540 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:210155478 original size:71 final size:71
Alignment explanation
Indices: 210155390--210155553 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
210155380 GAGATGTATC
210155390 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
210155455 AGGACA
66 AGGACA
210155461 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
210155526 AGGACA
66 AGGACA
210155532 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
210155554 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:210163048 original size:41 final size:41
Alignment explanation
Indices: 210163003--210163120 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
210162993 TGAAAGATAA
210163003 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
210163044 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
210163074 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
210163115 ATGTAG
1 ATGTAG
210163121 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:210163059 original size:71 final size:71
Alignment explanation
Indices: 210162971--210163134 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
210162961 GAGATGTATC
210162971 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
210163036 AGGACA
66 AGGACA
210163042 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
210163107 AGGACA
66 AGGACA
210163113 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
210163135 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:210172750 original size:40 final size:41
Alignment explanation
Indices: 210172705--210172871 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
210172695 CGGAATATAA
*
210172705 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
210172745 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
210172785 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
210172825 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
210172864 CCGGATAT
1 CCGGATAT
210172872 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:210173717 original size:17 final size:19
Alignment explanation
Indices: 210173694--210173739 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
210173684 AAGAAGCATG
210173694 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
210173712 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
210173730 AATCATGCTC
1 AATCATGCTC
210173740 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:210180834 original size:40 final size:39
Alignment explanation
Indices: 210180723--210180873 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
210180713 TATAATCAGT
* * *
210180723 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
210180763 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
210180803 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
210180843 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
210180874 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:210180857 original size:80 final size:79
Alignment explanation
Indices: 210180723--210180873 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
210180713 TATAATCAGT
*
210180723 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
210180788 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
210180803 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
210180866 CCGGATAT
64 CCGGATAT
210180874 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:210181716 original size:17 final size:19
Alignment explanation
Indices: 210181693--210181738 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
210181683 AAGAAGCATG
210181693 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
210181711 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
210181729 AATCATGCTC
1 AATCATGCTC
210181739 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:210190051 original size:40 final size:39
Alignment explanation
Indices: 210190006--210190213 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
210189996 CGGAATACAA
*
210190006 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
210190046 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
210190086 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
210190126 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
210190166 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
210190206 CCGGATAT
1 CCGGATAT
210190214 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:210190146 original size:80 final size:80
Alignment explanation
Indices: 210190006--210190212 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
210189996 CGGAATACAA
* * *
210190006 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
210190070 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
210190086 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
210190150 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
210190166 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
210190213 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:210193056 original size:40 final size:40
Alignment explanation
Indices: 210192999--210193223 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
210192989 TCGAATGATG
* * *
210192999 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
210193039 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
210193079 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
210193118 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
210193158 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
210193199 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
210193224 AACAAGTAGC
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 34 0.20
40 123 0.74
41 9 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:210193245 original size:119 final size:119
Alignment explanation
Indices: 210192999--210193246 Score: 290
Period size: 119 Copynumber: 2.1 Consensus size: 119
210192989 TCGAATGATG
* *
210192999 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTC
* * ** *
210193064 GTGCGAGTTACTAATTCCGGGCTAAGCCTGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAA
* * **
210193118 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
210193181 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACAAG-TAGCTATA
64 TCGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACAAGTTA-CTAAA
210193238 TCC-GGTTAA
1 TCCGGGTTAA
210193247 ACTCCGAAGG
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 77 0.70
120 30 0.27
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAA
Found at i:210194645 original size:27 final size:26
Alignment explanation
Indices: 210194606--210194665 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
210194596 GGTATTACAG
* * *
210194606 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGACTCTACCACAATATCTA
*
210194632 TATCTGGTGACTCTATCACAATATCTA
1 T-TCTGGTGACTCTACCACAATATCTA
210194659 TTCTGGT
1 TTCTGGT
210194666 AGCCATGTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (26 bp):
TTCTGGTGACTCTACCACAATATCTA
Found at i:210202276 original size:42 final size:42
Alignment explanation
Indices: 210202229--210202335 Score: 178
Period size: 42 Copynumber: 2.5 Consensus size: 42
210202219 TATTGGTCTC
210202229 GGCACTAAGTGTGCGGGTATAAATGGACACAGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACAGTGACAAGATT
*
210202271 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACAGTGACAAGATT
* * *
210202313 GGCACTACGTGTGTGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
210202336 ATTGTACAGC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACAGTGACAAGATT
Found at i:210202400 original size:27 final size:28
Alignment explanation
Indices: 210202343--210202412 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
210202333 AAAATTGTAC
**
210202343 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
210202371 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
210202398 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
210202413 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:210204076 original size:39 final size:39
Alignment explanation
Indices: 210204032--210204197 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 39
210204022 CGGAATATAA
210204032 CCGGATATAATCACGT-GCACAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAATGCCTTCGGGTCTTAGC
* ** *
210204071 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCAC-AATGCCTTCGGGTCTTAGC
* ** *
210204111 CCGGATGTAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAATCACTAGCACAA-TGCCTTCGGGTCTTAGC
** * * *
210204150 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAA-TGCCTTCGGG-TCTTAGC
210204190 CCGGATAT
1 CCGGATAT
210204198 CATTCAATTT
Statistics
Matches: 102, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 47 0.46
40 53 0.52
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:210204180 original size:79 final size:79
Alignment explanation
Indices: 210204048--210204195 Score: 187
Period size: 79 Copynumber: 1.9 Consensus size: 79
210204038 ATAATCACGT
*
210204048 GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGCC
1 GCACAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGCC
210204112 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * *
210204127 GCACAATTGCCTTC-GGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAA-TGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
210204189 CCCGGAT
63 CCCGGAT
210204196 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
78 3 0.05
79 49 0.82
80 8 0.13
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.28
Consensus pattern (79 bp):
GCACAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCCC
GGATGTAGCCACTA
Found at i:210212069 original size:40 final size:39
Alignment explanation
Indices: 210212024--210212152 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
210212014 CGGAATATAA
210212024 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
210212064 CCGGATAGAATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
210212102 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
210212142 CCGGATATAAT
1 CCGGATATAAT
210212153 TTCCAGCATA
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
38 32 0.44
40 41 0.56
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:210212089 original size:38 final size:37
Alignment explanation
Indices: 210212040--210212148 Score: 130
Period size: 38 Copynumber: 2.8 Consensus size: 37
210212030 ATAATCACGT
*
210212040 GCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AATCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGCAA-CTA
*
210212078 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA--TAGCAACTA
*
210212118 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
210212149 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
38 30 0.48
39 2 0.03
40 30 0.48
41 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGCAACTA
Found at i:210212166 original size:40 final size:40
Alignment explanation
Indices: 210212024--210212189 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
210212014 CGGAATATAA
* ** *
210212024 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
*
210212064 CCGGATAGAATCT-C-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * * *
210212102 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* * *
210212142 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGG-TCTTAGC
210212182 CCGGATAT
1 CCGGATAT
210212190 CATTCAATTT
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
38 29 0.28
39 4 0.04
40 68 0.67
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:210216618 original size:28 final size:28
Alignment explanation
Indices: 210216553--210216653 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
210216543 ATAGTGAATC
*
210216553 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
210216582 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
210216610 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
210216640 CGCACACTTAGTGC
1 CGCACACTTAGTGC
210216654 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:210224558 original size:28 final size:28
Alignment explanation
Indices: 210224493--210224593 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
210224483 ATAGTGAATC
*
210224493 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
210224522 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
210224550 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
210224580 CGCACACTTAGTGC
1 CGCACACTTAGTGC
210224594 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:210232504 original size:28 final size:28
Alignment explanation
Indices: 210232439--210232539 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
210232429 ATAGTGAATC
*
210232439 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
210232468 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
210232496 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
210232526 CGCACACTTAGTGC
1 CGCACACTTAGTGC
210232540 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:210240391 original size:28 final size:27
Alignment explanation
Indices: 210240358--210240425 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 27
210240348 ATAGTGAATC
* *
210240358 CGCACACTTAGTGCATATGTATTCAACT
1 CGCACACTTAGTGC-TATATAATCAACT
210240386 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
210240413 CG--CACTTAGTGCT
1 CGCACACTTAGTGCT
210240426 GTACAATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
25 11 0.29
27 13 0.34
28 14 0.37
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:210240424 original size:25 final size:26
Alignment explanation
Indices: 210240361--210240425 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
210240351 GTGAATCCGC
* *
210240361 ACACTTAGTGCATATGTATTCAACTCG
1 ACACTTAGTGC-TATATAATCAACTCG
210240388 CACACTTAGTGCTATATAATCAACTCG
1 -ACACTTAGTGCTATATAATCAACTCG
210240415 -CACTTAGTGCT
1 ACACTTAGTGCT
210240426 GTACAATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
25 11 0.31
27 13 0.37
28 11 0.31
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (26 bp):
ACACTTAGTGCTATATAATCAACTCG
Found at i:210243239 original size:28 final size:27
Alignment explanation
Indices: 210243171--210243248 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
210243161 GAATCATTTG
* *
210243171 ATATTTTGCACACTAAGTGTCATTCTC
1 ATATTTCGCACACTAAGTGCCATTCTC
*
210243198 ATATCTCGCACACTAAGTGCCATTCTC
1 ATATTTCGCACACTAAGTGCCATTCTC
* * *
210243225 AATATTTCGTACACTGAGTACCAT
1 -ATATTTCGCACACTAAGTGCCAT
210243249 ATTTGATTGC
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 24 0.56
28 19 0.44
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.35
Consensus pattern (27 bp):
ATATTTCGCACACTAAGTGCCATTCTC
Found at i:210249881 original size:43 final size:42
Alignment explanation
Indices: 210249807--210249887 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
210249797 TCTGAACTCA
**
210249807 TTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTTCGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
210249849 TTCACTGGCATTTTGGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCA-TTTCGCCTGCTAGGCCCGAAGCCCGATA
210249888 ATATTATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 9 0.26
43 25 0.74
ACGTcount: A:0.19, C:0.31, G:0.23, T:0.27
Consensus pattern (42 bp):
TTCACCGGCATTTCGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:210250085 original size:28 final size:28
Alignment explanation
Indices: 210250054--210250125 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
210250044 TTGATATTTT
**
210250054 GCACACTAAGTTTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
210250082 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
210250110 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
210250126 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:210253180 original size:42 final size:42
Alignment explanation
Indices: 210253118--210253212 Score: 154
Period size: 42 Copynumber: 2.3 Consensus size: 42
210253108 ACTCTGGTAG
* *
210253118 TTTATTTACAATTTTGGTGGTTTATCCACATATTTCTTGCAC
1 TTTATCTACAATTTTAGTGGTTTATCCACATATTTCTTGCAC
* *
210253160 TTTATCTACAATTTTAGTGGTTTATCCACATATTTCTTGTAG
1 TTTATCTACAATTTTAGTGGTTTATCCACATATTTCTTGCAC
210253202 TTTATCTACAA
1 TTTATCTACAA
210253213 ATACCGGTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.49
Consensus pattern (42 bp):
TTTATCTACAATTTTAGTGGTTTATCCACATATTTCTTGCAC
Found at i:210253185 original size:20 final size:21
Alignment explanation
Indices: 210253114--210253212 Score: 85
Period size: 22 Copynumber: 4.7 Consensus size: 21
210253104 AAAGACTCTG
* *
210253114 GTAGTTTATTTACAATTT-TG
1 GTAGTTTATCTACAATTTCTT
* *
210253134 GTGGTTTATCCACATATTTCTT
1 GTAGTTTATCTACA-ATTTCTT
* * *
210253156 GCACTTTATCTACAATTT-TA
1 GTAGTTTATCTACAATTTCTT
* *
210253176 GTGGTTTATCCACATATTTCTT
1 GTAGTTTATCTACA-ATTTCTT
210253198 GTAGTTTATCTACAA
1 GTAGTTTATCTACAA
210253213 ATACCGGTGG
Statistics
Matches: 59, Mismatches: 16, Indels: 7
0.72 0.20 0.09
Matches are distributed among these distances:
20 22 0.37
21 13 0.22
22 24 0.41
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (21 bp):
GTAGTTTATCTACAATTTCTT
Found at i:210259863 original size:40 final size:40
Alignment explanation
Indices: 210259761--210259927 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
210259751 AAATTGAATG
* * * * *
210259761 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
210259801 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
210259841 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
210259881 CTATCCGGGCT-AGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
210259920 ATATCCGG
1 ATATCCGG
210259928 TTATATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 31 0.29
40 74 0.70
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:210267832 original size:40 final size:40
Alignment explanation
Indices: 210267766--210267932 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
210267756 AAATTGAATG
* * *
210267766 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
210267805 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
210267845 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
210267885 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
210267925 ATATCCGG
1 ATATCCGG
210267933 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:210275112 original size:7 final size:7
Alignment explanation
Indices: 210275100--210275124 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
210275090 GTTGTCTTCT
210275100 TGTTTGA
1 TGTTTGA
210275107 TGTTTGA
1 TGTTTGA
210275114 TGTTTGA
1 TGTTTGA
210275121 TGTT
1 TGTT
210275125 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:210276047 original size:27 final size:28
Alignment explanation
Indices: 210275991--210276060 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
210275981 AAATTTGTAC
210275991 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
210276019 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
210276046 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
210276061 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:210283449 original size:28 final size:27
Alignment explanation
Indices: 210283363--210283452 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
210283353 GTGACAGAGT
* * *
210283363 CACCAGATACAAATATTTTGAGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
210283392 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
210283419 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
210283447 CACCAG
1 CACCAG
210283453 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.18
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:210283605 original size:28 final size:28
Alignment explanation
Indices: 210283558--210283622 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
210283548 AAATTAACCC
* *
210283558 TAGGGGTATAAAGGTCATTTTGCACGCA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
210283586 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
210283614 TAGGGGTAT
1 TAGGGGTAT
210283623 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.09, G:0.29, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:210284706 original size:12 final size:13
Alignment explanation
Indices: 210284687--210284719 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
210284677 GGGTTCGGCT
210284687 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
210284700 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
210284712 ATGGAGAA
1 ATGGAGAA
210284720 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:210292695 original size:38 final size:35
Alignment explanation
Indices: 210292636--210292750 Score: 129
Period size: 31 Copynumber: 3.4 Consensus size: 35
210292626 TCAATCATGC
*
210292636 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
210292675 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
210292706 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
210292737 ACTGGGCCGAAGCC
1 ACTGGGCCGAAGCC
210292751 CTTTACTGTA
Statistics
Matches: 75, Mismatches: 1, Indels: 8
0.89 0.01 0.10
Matches are distributed among these distances:
31 46 0.61
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.19
39 11 0.15
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:210292697 original size:31 final size:31
Alignment explanation
Indices: 210292659--210292750 Score: 175
Period size: 31 Copynumber: 3.0 Consensus size: 31
210292649 CCTTTTCATA
*
210292659 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
210292690 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
210292721 TTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTCATATTTCATATTACTGGGCCGAAGCC
210292751 CTTTACTGTA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:210292997 original size:24 final size:24
Alignment explanation
Indices: 210292946--210293111 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
210292936 GCTTTATCAT
*
210292946 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
210292971 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
210292995 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
210293018 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
* *
210293041 ATAACTGTGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
210293065 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
210293089 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
210293112 TCACTTCCTC
Statistics
Matches: 132, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 45 0.34
24 75 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:210293025 original size:47 final size:47
Alignment explanation
Indices: 210292946--210293111 Score: 228
Period size: 47 Copynumber: 3.5 Consensus size: 47
210292936 GCTTTATCAT
* *
210292946 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT-A
*
210292995 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
* * *
210293041 ATAACTGTGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTA
210293089 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
210293112 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
46 22 0.20
47 40 0.37
48 34 0.31
49 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:210293187 original size:20 final size:20
Alignment explanation
Indices: 210293162--210293221 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
210293152 TATGATTACC
210293162 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
210293182 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
210293202 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
210293222 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:210293192 original size:11 final size:11
Alignment explanation
Indices: 210293162--210293216 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
210293152 TATGATTACC
210293162 TCATGTGCATA
1 TCATGTGCATA
*
210293173 TCA--TACATA
1 TCATGTGCATA
210293182 TCATGTGCATA
1 TCATGTGCATA
* *
210293193 TCA--TACATT
1 TCATGTGCATA
210293202 TCATGTGCATA
1 TCATGTGCATA
210293213 TCAT
1 TCAT
210293217 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:210293296 original size:25 final size:25
Alignment explanation
Indices: 210293264--210293311 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
210293254 ATACATAAAC
* * *
210293264 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
210293289 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
210293312 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:210300793 original size:38 final size:35
Alignment explanation
Indices: 210300734--210300851 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
210300724 TCAATCATGC
*
210300734 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
210300773 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
210300804 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
210300835 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
210300852 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:210300795 original size:31 final size:31
Alignment explanation
Indices: 210300757--210300851 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
210300747 CCTTTTCATA
*
210300757 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
210300788 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
210300819 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
210300850 TT
1 TT
210300852 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:210301094 original size:24 final size:24
Alignment explanation
Indices: 210301043--210301185 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
210301033 GCTTTATCAT
*
210301043 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
210301068 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
210301092 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
210301115 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
210301139 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
210301163 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
210301186 CACTTCCTCC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:210301122 original size:47 final size:48
Alignment explanation
Indices: 210301043--210301184 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
210301033 GCTTTATCAT
* *
210301043 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
210301092 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
210301139 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
210301185 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:210301143 original size:71 final size:72
Alignment explanation
Indices: 210301042--210301185 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
210301032 TGCTTTATCA
*
210301042 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
210301107 GCCCTTT
66 GCCCTTT
* * **
210301114 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
210301177 AGCCCTTT
65 AGCCCTTT
210301185 T
1 T
210301186 CACTTCCTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:210301257 original size:20 final size:20
Alignment explanation
Indices: 210301234--210301272 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
210301224 TTATGATTAC
210301234 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATT
210301254 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
210301273 ACATATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATT
Found at i:210301346 original size:25 final size:25
Alignment explanation
Indices: 210301314--210301361 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
210301304 ATACATAAAC
* * *
210301314 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
210301339 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
210301362 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:210309700 original size:28 final size:29
Alignment explanation
Indices: 210309633--210309733 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
210309623 ATAGTGAATC
*
210309633 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
210309662 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
210309690 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
210309720 CGCACACTTAGTGC
1 CGCACACTTAGTGC
210309734 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:210314253 original size:20 final size:20
Alignment explanation
Indices: 210314228--210314266 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
210314218 TGTCATATAT
210314228 ATCATGAACTCAGACCACAA
1 ATCATGAACTCAGACCACAA
* *
210314248 ATCATGAGCTCAGATCACA
1 ATCATGAACTCAGACCACA
210314267 TAGTTCTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.28, G:0.13, T:0.18
Consensus pattern (20 bp):
ATCATGAACTCAGACCACAA
Found at i:210316945 original size:18 final size:18
Alignment explanation
Indices: 210316922--210316962 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
210316912 AGGGGCAAAA
210316922 GTGTAAAAGTGCTTTAAT
1 GTGTAAAAGTGCTTTAAT
210316940 GTGTAAAAGTGCTTTAAT
1 GTGTAAAAGTGCTTTAAT
210316958 GTGTA
1 GTGTA
210316963 TTATGGACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (18 bp):
GTGTAAAAGTGCTTTAAT
Found at i:210321501 original size:43 final size:44
Alignment explanation
Indices: 210321367--210321523 Score: 173
Period size: 43 Copynumber: 3.6 Consensus size: 44
210321357 TGTGATTTTG
* * * *
210321367 TGTAAGACCACGTCTGGGAC-GTTGGCATCAAT-TTGAGATTTACG
1 TGTAAGACCATGTCTGGGACAG-TGGCATCAATATT-TGACTTACA
*
210321411 TGTAAGACCATGTCTAGGACA-TCGGCATC-ATATTTGACTT-CA
1 TGTAAGACCATGTCTGGGACAGT-GGCATCAATATTTGACTTACA
*
210321453 TGTAAGACCCTGTCTGGGACAGTGGCATCAATATTTGA-TTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCAATATTTGACTTACA
* *
210321496 TGTAAGACCATGTTTGGGACATTGGCAT
1 TGTAAGACCATGTCTGGGACAGTGGCAT
210321524 TGTACGAGTT
Statistics
Matches: 97, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
42 28 0.29
43 43 0.44
44 26 0.27
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCAATATTTGACTTACA
Found at i:210323538 original size:27 final size:28
Alignment explanation
Indices: 210323482--210323551 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
210323472 AAATTTGTAC
210323482 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
210323510 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
210323537 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
210323552 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:210323562 original size:27 final size:27
Alignment explanation
Indices: 210323482--210323563 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
210323472 AAATTTGTAC
* *
210323482 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
210323510 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
210323537 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
210323564 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:210333214 original size:47 final size:47
Alignment explanation
Indices: 210333155--210333638 Score: 797
Period size: 47 Copynumber: 10.3 Consensus size: 47
210333145 GATGTACAAG
* * *
210333155 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
210333202 GTGTATATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
210333249 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
210333296 GTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
210333343 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
210333390 GTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
210333437 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
210333484 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
210333531 GTGTATATATGAGATAAGACCGAATGGTCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
210333578 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
210333625 GTGTATATATGTGA
1 GTGTATATATGTGA
210333639 CAGCCCAAAA
Statistics
Matches: 408, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 408 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:210335468 original size:40 final size:39
Alignment explanation
Indices: 210335300--210335470 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
210335290 AGAAATTGAA
* *
210335300 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
210335340 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
210335380 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
210335420 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
210335460 TGATATCCGGG
1 TGATATCCGGG
210335471 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:210343462 original size:40 final size:39
Alignment explanation
Indices: 210343294--210343464 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
210343284 AGAAATTGAA
* *
210343294 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
210343334 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
210343374 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
210343414 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
210343454 TGATATCCGGG
1 TGATATCCGGG
210343465 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:210344957 original size:47 final size:47
Alignment explanation
Indices: 210344886--210345134 Score: 399
Period size: 47 Copynumber: 5.3 Consensus size: 47
210344876 GGGTGTTACA
* * *
210344886 ATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGT
*
210344933 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGT
* * * * *
210344980 ATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGT
*
210345027 ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAGGTGT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGT
210345074 ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGT
*
210345121 ATAAATGTGATAAG
1 ATATATGTGATAAG
210345135 TCCCGAAGGG
Statistics
Matches: 188, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 188 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.27
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGT
Found at i:210354348 original size:40 final size:40
Alignment explanation
Indices: 210354289--210354457 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
210354279 CGGGACTTTA
* * *
210354289 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
210354329 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
210354369 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
210354409 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
210354449 CCCGGATAT
1 CCCGGATAT
210354458 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:210365892 original size:93 final size:93
Alignment explanation
Indices: 210365780--210365951 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
210365770 GCCCATAAGT
* *
210365780 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
210365845 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
210365873 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
210365938 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
210365952 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:210365947 original size:46 final size:46
Alignment explanation
Indices: 210365772--210365947 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
210365762 TGTAACCCGC
* * *
210365772 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
210365818 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
210365868 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
210365911 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
210365948 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:210368364 original size:30 final size:30
Alignment explanation
Indices: 210368320--210368408 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
210368310 CAAAGATAAC
210368320 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
210368349 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
210368379 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
210368409 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:210368368 original size:15 final size:15
Alignment explanation
Indices: 210368320--210368399 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
210368310 CAAAGATAAC
*
210368320 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
210368334 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
210368349 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
210368364 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
210368379 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
210368394 AAGAAA
1 AAGAAA
210368400 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:210368408 original size:15 final size:15
Alignment explanation
Indices: 210368331--210368408 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
210368321 AGAAAACCGA
210368331 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
210368346 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
210368360 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
210368375 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
210368391 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
210368406 ATA
1 ATA
210368409 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:210371467 original size:93 final size:93
Alignment explanation
Indices: 210371355--210371526 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
210371345 GCCCATAAGT
* *
210371355 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
210371420 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
210371448 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
210371513 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
210371527 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:210371522 original size:46 final size:46
Alignment explanation
Indices: 210371347--210371522 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
210371337 TGTAACCCGC
* * *
210371347 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
210371393 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
210371443 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
210371486 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
210371523 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:210375756 original size:15 final size:15
Alignment explanation
Indices: 210375736--210375771 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
210375726 GTAAAAGATT
210375736 TGAAGATAGGTTAAA
1 TGAAGATAGGTTAAA
*
210375751 TGAAGATGGGTTAAA
1 TGAAGATAGGTTAAA
210375766 TGAAGA
1 TGAAGA
210375772 CATCCAGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.31, T:0.25
Consensus pattern (15 bp):
TGAAGATAGGTTAAA
Found at i:210377779 original size:47 final size:48
Alignment explanation
Indices: 210377704--210377925 Score: 178
Period size: 46 Copynumber: 4.7 Consensus size: 48
210377694 GTAAGGTGCT
* *
210377704 GATGCCATGTCCTAGACACGGTCTTACACTGGCTCATAC-CTC-AAGTC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCATACGCTCGAAGTC
* * * * *
210377751 GATGCTATGTCCCAGACATGGTCGTACACTGACT-AT-CATCTCGTAGCC
1 GATGC-ATGTCCCAGACATGGTCTTACACTGGCTCATAC-GCTCGAAGTC
* *
210377799 GATGCATGTCCCAAACAT-GTCTTACACTGGCT--TACGTCTCGAGGTC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCATACG-CTCGAAGTC
* * * *
210377845 AATGCATGCCCCAGACAT-GTCTTACACTAGC-CCT-CGTCTC-AATGTC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCATACG-CTCGAA-GTC
*
210377891 GATGCCATGTCCCAAACATGGTCTTACACTGGCTC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTC
210377926 TCATAATGTG
Statistics
Matches: 141, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.02
46 61 0.43
47 56 0.40
48 20 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTCATACGCTCGAAGTC
Found at i:210377953 original size:94 final size:92
Alignment explanation
Indices: 210377798--210377969 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 92
210377788 ATCTCGTAGC
* * * *
210377798 CGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGGTCAATGCATGCCCCAGACAT
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTTACATATCGAGGCCAATGCAAGCCCCAGACAT
210377863 GTCTTACACTAGCCCTCGTCTCAATGT
66 GTCTTACACTAGCCCTCGTCTCAATGT
* * *
210377890 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCAAGTCCCAG
1 CGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCAATGCAAGCCCCAG
210377953 ACATGTCTTACACTAGC
62 ACATGTCTTACACTAGC
210377970 TCACACACGA
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 5 0.07
93 14 0.20
94 48 0.70
95 2 0.03
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (92 bp):
CGATGCATGTCCCAAACATGTCTTACACTGGCTTACATATCGAGGCCAATGCAAGCCCCAGACAT
GTCTTACACTAGCCCTCGTCTCAATGT
Found at i:210380137 original size:40 final size:39
Alignment explanation
Indices: 210380061--210380191 Score: 122
Period size: 40 Copynumber: 3.3 Consensus size: 39
210380051 TACACATTCA
* * *
210380061 AATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACG
1 AATGCCTTCGGGACTTA-ACCGGATT-TAGTAACTCGCACG
* *
210380101 AATGCCTTCGGGACTTAACCTGGATTTAGTAGCTCGCTCG
1 AATGCCTTCGGGACTTAACC-GGATTTAGTAACTCGCACG
* *
210380141 AAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACG
1 AATGCCTTCGGGA-CTTA-ACCGGATTTAGTAACTCGCACG
* *
210380181 TATGCCGTCGG
1 AATGCCTTCGG
210380192 ATCTTATTCT
Statistics
Matches: 74, Mismatches: 12, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
39 5 0.07
40 64 0.86
41 5 0.07
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCGGATTTAGTAACTCGCACG
Found at i:210380208 original size:40 final size:40
Alignment explanation
Indices: 210380088--210380210 Score: 140
Period size: 40 Copynumber: 3.1 Consensus size: 40
210380078 GCCCGGTTAC
*
210380088 AGTAACTCGCACGAATGCCTTCGGGA-CTTAACCTGGATTT
1 AGTAACTCGCACGAATGCCTTC-GGATCTTAATCTGGATTT
* * * * *
210380128 AGTAGCTCGCTCGAAAGCCTTCGGATCTTAGTCCGGATTT
1 AGTAACTCGCACGAATGCCTTCGGATCTTAATCTGGATTT
* * * *
210380168 AGTAACTCGCACGTATGCCGTCGGATCTTATTCTGAATTT
1 AGTAACTCGCACGAATGCCTTCGGATCTTAATCTGGATTT
210380208 AGT
1 AGT
210380211 CACTTAGCAC
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 3 0.04
40 65 0.96
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (40 bp):
AGTAACTCGCACGAATGCCTTCGGATCTTAATCTGGATTT
Found at i:210388054 original size:40 final size:40
Alignment explanation
Indices: 210388009--210388193 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
210387999 TACACATTCA
* *
210388009 AATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACG
* * *
210388049 AATGCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCTCG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
* *
210388089 AAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACG
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACG
* * ** * *
210388129 TATGCCGTC-GGATCTTATTCCGGATTTAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACG
*
210388169 AAAGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAT
210388194 ATCATTCGAA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 107 0.89
41 10 0.08
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
Done.