Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 669 of 770
Found at i:210388173 original size:80 final size:80
Alignment explanation
Indices: 210388012--210388193 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 80
210388002 ACATTCAAAT
* * *
210388012 GCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTT
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGGATTT
* *
210388076 AGTAGCTCGCTCGAAA
65 AGTAGCTAGCACGAAA
* * **
210388092 GCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTATTCCGGATT
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTTAACCCGGATT
210388155 TAGTCA-CTTAGCAC-AAA
64 TAGT-AGC-TAGCACGAAA
210388172 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
210388194 ATCATTCGAA
Statistics
Matches: 86, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
79 6 0.07
80 70 0.81
81 10 0.12
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGGATTTA
GTAGCTAGCACGAAA
Found at i:210393443 original size:40 final size:40
Alignment explanation
Indices: 210393277--210393444 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
210393267 CATTTGAATG
* * *
210393277 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
210393317 ATGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
210393357 ATATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
210393397 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
210393437 GTATCCGG
1 ATATCCGG
210393445 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.93
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:210399679 original size:31 final size:31
Alignment explanation
Indices: 210399641--210399735 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 31
210399631 CCTTTTCATA
* *
210399641 TTTCATATTTCATAATACTGGGCTGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
210399672 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
*
210399703 TTTCAGATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
210399734 TT
1 TT
210399736 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:210399978 original size:24 final size:24
Alignment explanation
Indices: 210399927--210400044 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
210399917 GCTTTATCAT
*
210399927 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
210399952 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
210399976 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
210399999 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
210400022 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
210400045 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
22 16 0.19
23 12 0.14
24 45 0.53
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:210400015 original size:46 final size:48
Alignment explanation
Indices: 210399927--210400044 Score: 161
Period size: 46 Copynumber: 2.5 Consensus size: 48
210399917 GCTTTATCAT
*
210399927 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
210399976 ATAACTGGGGCATAAGCCCTTTT-ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
210400022 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
210400045 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
46 37 0.58
47 6 0.09
48 9 0.14
49 12 0.19
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:210400153 original size:20 final size:20
Alignment explanation
Indices: 210400095--210400154 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
210400085 TATGATTACC
*
210400095 TCATGTGCATATCATACACA
1 TCATGTGCATATCATACATA
*
210400115 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
210400135 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
210400155 CCATATTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:210400229 original size:25 final size:25
Alignment explanation
Indices: 210400197--210400244 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
210400187 ATACATAAAC
* * *
210400197 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
210400222 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
210400245 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:210401464 original size:27 final size:27
Alignment explanation
Indices: 210401403--210401466 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
210401393 GGCATATTCA
*
210401403 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGCTATTACGG
* *
210401430 TCACTTTACCCTACAAGGGCT-TTACGG
1 TCATTTTACCATAC-AGGGCTATTACGG
*
210401457 TCTTTTTACC
1 TCATTTTACC
210401467 TTTTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGCTATTACGG
Found at i:210401550 original size:27 final size:26
Alignment explanation
Indices: 210401520--210401575 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
210401510 GTAAATCAAC
*
210401520 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTACTTCTA-TAATTTT-T
*
210401547 AAACCAATGGTACTTCTATAATTTTT
1 AAACCAAAGGTACTTCTATAATTTTT
210401573 AAA
1 AAA
210401576 AAGTCAAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (26 bp):
AAACCAAAGGTACTTCTATAATTTTT
Found at i:210401667 original size:27 final size:27
Alignment explanation
Indices: 210401528--210402198 Score: 216
Period size: 27 Copynumber: 24.8 Consensus size: 27
210401518 ACAAACCAAA
* * * * *
210401528 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCGGTAATTTTATAAATCGAG
* ** * *
210401555 GGTACTTCTATAATTTTTAAAAAGTCAAG
1 GGTATTTCGGTAA-TTTTATAAA-TCGAG
* * *
210401584 GGTATTTCTGTAACTTTGTAAATC-AGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
210401611 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*
210401638 GGTATTTCGGTAATTTTGTAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * * *
210401665 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * *
210401692 GGTCAAAT-AGTAATTCTATAAATCGAG
1 GGT-ATTTCGGTAATTTTATAAATCGAG
*** * * *
210401719 GGTAAAACAGTAATTTTGTAAATTGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * *
210401746 GGTAAAACGGTAATTCTATAAGTCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** * * *
210401773 GGTAAAACGATAATTATGTAAATC-AGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
*** * * *
210401800 GGTAAAACGGTAATTATGTAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
*** *
210401827 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * * *
210401854 GGTAAAAT-AGTAATTCTGTAAA-CTGAG
1 GGT-ATTTCGGTAATTTTATAAATC-GAG
** *
210401881 GGTAAAAT-GGTAATTCTATAAATCGAG
1 GGT-ATTTCGGTAATTTTATAAATCGAG
*** *
210401908 GGTAAAACGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
*** *
210401935 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
210401962 GGTACTTT-GGTAATTTTACAAGTCGAG
1 GGTA-TTTCGGTAATTTTATAAATCGAG
** * **
210401989 GGTATTTCAATAATTTTACAGGTCGAG
1 GGTATTTCGGTAATTTTATAAATCGAG
* * * *
210402016 GGTATTTCAGTAATTTCACAAAT-TAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
210402043 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * * *
210402070 GGTATTTTGATAATTTTACAAA-CTAAG
1 GGTATTTCGGTAATTTTATAAATC-GAG
* * *
210402097 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTCGGTAATTTTATAAATCGA-G
* * *
210402124 GGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTCGGTAATTTTATAAATCGAG
** * *
210402151 GGTATTTTAGTAATTTTACAAAGC-AG
1 GGTATTTCGGTAATTTTATAAATCGAG
* *
210402177 GGTATTTTGGTAATTTTGTAAA
1 GGTATTTCGGTAATTTTATAAA
210402199 CCAAAGTATT
Statistics
Matches: 537, Mismatches: 87, Indels: 41
0.81 0.13 0.06
Matches are distributed among these distances:
26 35 0.07
27 463 0.86
28 25 0.05
29 14 0.03
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTATAAATCGAG
Found at i:210401678 original size:54 final size:54
Alignment explanation
Indices: 210401620--210401992 Score: 326
Period size: 54 Copynumber: 6.9 Consensus size: 54
210401610 GGGTATTTTG
* * * ** *
210401620 GTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAACA
* * * *
210401674 GTAATTCTGTAAATCAAGGGTCAAAT-AGTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGT-AAATCGGTAATTTTATAAATCGAGGGTAAAACA
* * * * * *
210401728 GTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAGTCGAGGGTAAAAC-
1 GTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAACA
* * * * * * *
210401781 GATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAACG
1 G-TAATTCTATAAATCGA-GGGTAAATCGGTAATTTTATAAATCGA-GGGTAAAACA
* * * **
210401836 GTAATTCTATAAATCGAGGGTAAAAT-AGTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGT-AAATCGGTAATTTTATAAATC-GAGGGTAAAACA
* * *
210401890 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAACA
** * * *
210401944 GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 GTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTA
210401993 TTTCAATAAT
Statistics
Matches: 267, Mismatches: 40, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
53 9 0.03
54 249 0.93
55 9 0.03
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAATCGGTAATTTTATAAATCGAGGGTAAAACA
Found at i:210401705 original size:81 final size:81
Alignment explanation
Indices: 210401620--210401992 Score: 367
Period size: 81 Copynumber: 4.6 Consensus size: 81
210401610 GGGTATTTTG
* * ** * *
210401620 GTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTCTATAAATTGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATA
* *
210401685 AATCAAGGGTCAAATA
66 AATCGAGGGTAAAATA
* * * *
210401701 GTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTATAAATTGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATA
* *
210401766 AGTCGAGGGTAAAA-C
66 AATCGAGGGTAAAATA
* * * * * *
210401781 GATAATTATGTAAA-TCAGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCT
1 G-TAATTCTATAAATTGA-GGGTAAATCGGTAATTTTGTAAATCGA-GGGTAAAACGGTAATTCT
210401844 ATAAATCGAGGGTAAAATA
63 ATAAATCGAGGGTAAAATA
* * * * * *
210401863 GTAATTCTGTAAACTGAGGGTAAAAT-GGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTAC
1 GTAATTCTATAAATTGAGGGT-AAATCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTAT
**
210401927 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAATA
* ** * ** *
210401944 GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 GTAATTCTATAAATTGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTA
210401993 TTTCAATAAT
Statistics
Matches: 243, Mismatches: 41, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
80 5 0.02
81 231 0.95
82 7 0.03
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTCTATAAATTGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATA
Found at i:210402099 original size:81 final size:81
Alignment explanation
Indices: 210401961--210402172 Score: 241
Period size: 81 Copynumber: 2.6 Consensus size: 81
210401951 TATAAATCGA
* * * * ** *
210401961 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTAC-AGGTCGAGGGTATTTC
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT-TATAATTTTACAAACTCAAGGGTATTTC
*
210402024 AGTAATTTCACAAATTAG
64 AGTAATTTCACAAACTAG
**
210402042 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACT-AAGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-ATAATTTTACAAACTCAAGGGTATTTCA
*
210402106 GTAATTTTACAAACTAG
65 GTAATTTCACAAACTAG
* * *
210402123 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA-TAATTTTACAAA
210402173 GCAGGGTATT
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
80 1 0.01
81 106 0.94
82 6 0.05
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTATAATTTTACAAACTCAAGGGTATTTCAG
TAATTTCACAAACTAG
Found at i:210404880 original size:40 final size:40
Alignment explanation
Indices: 210404814--210404980 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
210404804 AAATTGAATG
* * *
210404814 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
210404853 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
210404893 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
210404933 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
210404973 ATATCCGG
1 ATATCCGG
210404981 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:210412784 original size:40 final size:40
Alignment explanation
Indices: 210412718--210412884 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
210412708 AAATTGAATG
* * *
210412718 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
210412757 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
210412797 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
210412837 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
210412877 ATATCCGG
1 ATATCCGG
210412885 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:210415963 original size:38 final size:35
Alignment explanation
Indices: 210415904--210416021 Score: 126
Period size: 31 Copynumber: 3.5 Consensus size: 35
210415894 TCAATCATGC
*
210415904 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
210415943 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
*
210415974 ACTGGGCCGAAGCCTTTTCAGATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
210416005 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
210416022 ACTGTAAACG
Statistics
Matches: 77, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
31 48 0.62
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:210415965 original size:31 final size:31
Alignment explanation
Indices: 210415927--210416021 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
210415917 CCTTTTCATA
*
210415927 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
210415958 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
*
210415989 TTTCAGATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
210416020 TT
1 TT
210416022 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:210416277 original size:24 final size:24
Alignment explanation
Indices: 210416213--210416330 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
210416203 GCTTTATCAT
*
210416213 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
210416238 ATAACTGGGG-AAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
210416261 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
210416284 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
210416308 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
210416331 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
23 38 0.45
24 39 0.46
25 8 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:210416301 original size:47 final size:47
Alignment explanation
Indices: 210416213--210416330 Score: 159
Period size: 47 Copynumber: 2.5 Consensus size: 47
210416203 GCTTTATCAT
*
210416213 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGAAAAGCCCTTTCA
* **
210416261 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGG-AAAAGCCCTTTCA
210416308 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
210416331 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
46 10 0.16
47 42 0.66
48 12 0.19
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGAAAAGCCCTTTCA
Found at i:210416406 original size:20 final size:20
Alignment explanation
Indices: 210416381--210416440 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
210416371 TATGATTACC
210416381 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
210416401 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
210416421 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
210416441 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:210416411 original size:11 final size:11
Alignment explanation
Indices: 210416381--210416435 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
210416371 TATGATTACC
210416381 TCATGTGCATA
1 TCATGTGCATA
*
210416392 TCA--TACATA
1 TCATGTGCATA
210416401 TCATGTGCATA
1 TCATGTGCATA
* *
210416412 TCA--TACATT
1 TCATGTGCATA
210416421 TCATGTGCATA
1 TCATGTGCATA
210416432 TCAT
1 TCAT
210416436 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:210416515 original size:25 final size:25
Alignment explanation
Indices: 210416483--210416530 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
210416473 ATACATAAAC
* * *
210416483 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
210416508 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
210416531 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:210417747 original size:27 final size:27
Alignment explanation
Indices: 210417685--210417749 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
210417675 GGGCATATTC
210417685 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
210417712 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
210417739 GTCTTTTTACC
1 GTCATTTTACC
210417750 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:210417833 original size:27 final size:27
Alignment explanation
Indices: 210417811--210417977 Score: 129
Period size: 27 Copynumber: 6.1 Consensus size: 27
210417801 ACAAACCAAA
* *
210417811 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTCAGTAATTTTGTAAATCAAG
* **
210417838 GGTACTTCTA-TAATTTTAAAAAGTCAAG
1 GGTATTTC-AGTAATTTTGTAAA-TCAAG
* * *
210417866 GGTATTTCTGTAACTTTGTAAATCAGG
1 GGTATTTCAGTAATTTTGTAAATCAAG
** ** **
210417893 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
* *
210417920 GGTATTTCGGTAATTTTGTAAATCGAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
*** *
210417947 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTCAGTAATTTTGTAAATCAAG
210417974 GGTA
1 GGTA
210417978 AAATAAATTC
Statistics
Matches: 108, Mismatches: 29, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
27 88 0.81
28 20 0.19
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGTAAATCAAG
Found at i:210417939 original size:54 final size:55
Alignment explanation
Indices: 210417811--210417948 Score: 145
Period size: 55 Copynumber: 2.5 Consensus size: 55
210417801 ACAAACCAAA
* **
210417811 GGTATTTCAGTAATTTTGTAAACCAATGGTACTTCTATAATTTTAAAAAGTCAAG
1 GGTATTTCAGTAATTTTGTAAATCAGGGGTACTTCTATAATTTTAAAAAGTCAAG
* * * * * **
210417866 GGTATTTCTGTAACTTTGTAAATCAGGGGTA-TTTTGGTAATTTTACAAA-TTGAG
1 GGTATTTCAGTAATTTTGTAAATCAGGGGTACTTCT-ATAATTTTAAAAAGTCAAG
*
210417920 GGTATTTCGGTAATTTTGTAAATCGAGGG
1 GGTATTTCAGTAATTTTGTAAATC-AGGG
210417949 TAAAACAGTA
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 28 0.41
55 41 0.59
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (55 bp):
GGTATTTCAGTAATTTTGTAAATCAGGGGTACTTCTATAATTTTAAAAAGTCAAG
Found at i:210417960 original size:54 final size:54
Alignment explanation
Indices: 210417901--210418270 Score: 344
Period size: 54 Copynumber: 6.9 Consensus size: 54
210417891 GGGGTATTTT
* * * **
210417901 GGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTAAAAC
* * * * * *
210417955 AGTAATTCTGTAAATCAAGGGTAAAAT---AAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGT-AAATCGGTAATTTTGTAAATCGAGGGTAAAAC
* * * *
210418007 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTAAAAC
* * * * * *
210418061 GATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAAC
1 GGTAATTCTATAAATCGA-GGGTAAATCGGTAATTTTGTAAATCGA-GGGTAAAAC
* *
210418115 GGTAATTCTATAAATCGAGGGTAAAAT-AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGT-AAATCGGTAATTTTGTAAATC-GAGGGTAAAAC
* **
210418169 GGTAATTCTATAAATC--GGGTAAAACGGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTCTATAAATCGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTAAAAC
** * ** *
210418221 GGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 GGTAATTCTATAAATCGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTA
210418271 TTTCAATAAT
Statistics
Matches: 263, Mismatches: 39, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
51 6 0.02
52 83 0.32
53 3 0.01
54 164 0.62
55 7 0.03
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.29
Consensus pattern (54 bp):
GGTAATTCTATAAATCGAGGGTAAATCGGTAATTTTGTAAATCGAGGGTAAAAC
Found at i:210417978 original size:27 final size:27
Alignment explanation
Indices: 210417927--210418243 Score: 389
Period size: 27 Copynumber: 11.9 Consensus size: 27
210417917 GAGGGTATTT
*
210417927 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
210417954 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
210417981 ---TAAATTCTATAAATCGAGGGTAAAA
1 CGGT-AATTCTGTAAATCGAGGGTAAAA
210418006 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
210418033 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
210418060 CGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
* *
210418087 CGGTAATTATGTAAAT-TAGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
*
210418114 CGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
**
210418141 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 CGGTAATTCTGTAAATC-GAGGGTAAAA
*
210418168 CGGTAATTCTATAAATC--GGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* **
210418193 CGGTAATTTTACAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
210418220 CGGTAATTCTATAAATCGAGGGTA
1 CGGTAATTCTGTAAATCGAGGGTA
210418244 CTTTGGTAAT
Statistics
Matches: 255, Mismatches: 24, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
24 1 0.00
25 44 0.17
26 2 0.01
27 205 0.80
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
CGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:210418265 original size:27 final size:27
Alignment explanation
Indices: 210418194--210418470 Score: 258
Period size: 27 Copynumber: 10.3 Consensus size: 27
210418184 CGGGTAAAAC
****
210418194 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
210418221 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
210418248 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
210418275 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
210418302 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
210418329 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
210418356 GATAATTTTACAAA-CTAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
*
210418382 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * *
210418409 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
210418436 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
210418462 GGTAATTTT
1 GGTAATTTT
210418471 GTAAACCAAA
Statistics
Matches: 216, Mismatches: 30, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
26 44 0.20
27 170 0.79
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:210418268 original size:106 final size:106
Alignment explanation
Indices: 210417928--210418270 Score: 385
Period size: 106 Copynumber: 3.2 Consensus size: 106
210417918 AGGGTATTTC
* * * *
210417928 GGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAA---TAAATTCTA
1 GGTAATTTTATAAGTCGAGGGTAAAACGGTAATTCTGTAAATC-AGGGTAAAACGGT-AATTTTA
* *
210417990 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
64 -AAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT
* * * *
210418034 GGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGT
1 GGTAATTTTATAAGTCGAGGGTAAAACGGTAATTCTGTAAATCA-GGGTAAAACGGTAATT-T-T
* *
210418099 AAATTAG-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT
63 AAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT
* * *
210418142 AGTAATTCTGTA-AACT-GAGGGTAAAACGGTAATTCTATAAATC-GGGTAAAACGGTAATTTTA
1 GGTAATT-T-TATAAGTCGAGGGTAAAACGGTAATTCTGTAAATCAGGGTAAAACGGTAATTTTA
***
210418204 CAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTT
64 -AAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT
*
210418248 GGTAATTTTACAAGTCGAGGGTA
1 GGTAATTTTATAAGTCGAGGGTA
210418271 TTTCAATAAT
Statistics
Matches: 201, Mismatches: 24, Indels: 24
0.81 0.10 0.10
Matches are distributed among these distances:
104 4 0.02
105 10 0.05
106 108 0.54
108 68 0.34
109 8 0.04
110 3 0.01
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.28
Consensus pattern (106 bp):
GGTAATTTTATAAGTCGAGGGTAAAACGGTAATTCTGTAAATCAGGGTAAAACGGTAATTTTAAA
ATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT
Found at i:210418335 original size:54 final size:53
Alignment explanation
Indices: 210418293--210418449 Score: 181
Period size: 53 Copynumber: 2.9 Consensus size: 53
210418283 TACAGGTCGA
* *
210418293 GGGTATTTCAG-TAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTT-AGATAATTTCACAAACTA-GGGTATTTTGGTAATTTTACAAACGAG
* * *
210418347 GGGTATTTTGATAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTAGATAATTTCACAAACTAGGGTATTTTGGTAATTTTACAAACGAG
* * * * * *
210418400 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAA
1 GGGTATTTAGATAATTTCACAAA-CTAGGGTATTTTGGTAATTTTACAAA
210418450 GCAGGGTATT
Statistics
Matches: 94, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
53 49 0.52
54 45 0.48
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (53 bp):
GGGTATTTAGATAATTTCACAAACTAGGGTATTTTGGTAATTTTACAAACGAG
Found at i:210418410 original size:80 final size:78
Alignment explanation
Indices: 210418239--210418470 Score: 268
Period size: 80 Copynumber: 2.9 Consensus size: 78
210418229 TATAAATCGA
* * * * ** **
210418239 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT-TATAATTTTACA-AAC-AGGGTATTTTG
* *
210418303 GTAATTTCACAAATTAG
62 GTAATTTTACAAACTAG
210418320 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGTATTTTGGT
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-ATAATTTTACAAAC-AGGGTATTTTGGT
210418385 AATTTTACAAACTAG
64 AATTTTACAAACTAG
* * *
210418400 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAGCAGGGTATTTTGGT
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA-TAATTTTACAAA-CAGGGTATTTTGGT
210418465 AATTTT
64 AATTTT
210418471 GTAAACCAAA
Statistics
Matches: 133, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
79 1 0.01
80 89 0.67
81 39 0.29
82 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (78 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTATAATTTTACAAACAGGGTATTTTGGTAA
TTTTACAAACTAG
Found at i:210418476 original size:53 final size:54
Alignment explanation
Indices: 210418320--210418488 Score: 238
Period size: 53 Copynumber: 3.2 Consensus size: 54
210418310 CACAAATTAG
* * * *
210418320 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAA-CTA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
*
210418373 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
*
210418427 GGGTATTTTAGTAATTTTACAAAGC-A-GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACCAA
*
210418480 -AGTATTTTA
1 GGGTATTTTA
210418489 AACATGGATA
Statistics
Matches: 108, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
52 8 0.07
53 74 0.69
54 25 0.23
55 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:210418484 original size:26 final size:26
Alignment explanation
Indices: 210418321--210418487 Score: 181
Period size: 27 Copynumber: 6.3 Consensus size: 26
210418311 ACAAATTAGG
* *
210418321 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
210418348 GGTATTTTGATAATTTTACAAACTAG
1 GGTATTTTGGTAATTTTACAAACCAA
* *
210418374 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
210418401 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
210418427 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
210418454 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
210418480 AGTATTTT
1 GGTATTTT
210418488 AAACATGGAT
Statistics
Matches: 123, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
26 53 0.43
27 70 0.57
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:210424843 original size:40 final size:40
Alignment explanation
Indices: 210424741--210424907 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
210424731 AAATTGAATG
* * * * *
210424741 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
210424781 ATATCC-GGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
210424820 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
210424860 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
210424900 ATATCCGG
1 ATATCCGG
210424908 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 34 0.32
40 69 0.66
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:210425817 original size:16 final size:16
Alignment explanation
Indices: 210425794--210425831 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
210425784 TTATTAAAAT
210425794 AAAATTTA-AATATTA
1 AAAATTTATAATATTA
*
210425809 AATAATTTATTATATTA
1 AA-AATTTATAATATTA
210425826 AAAATT
1 AAAATT
210425832 AATTACATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 10 0.50
17 8 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AAAATTTATAATATTA
Found at i:210425836 original size:16 final size:17
Alignment explanation
Indices: 210425803--210425836 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
210425793 TAAAATTTAA
*
210425803 ATATTAAATAATTTATT
1 ATATTAAATAATTAATT
210425820 ATATTAAA-AATTAATT
1 ATATTAAATAATTAATT
210425836 A
1 A
210425837 CATGACTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATTAAATAATTAATT
Found at i:210429644 original size:28 final size:28
Alignment explanation
Indices: 210429575--210429675 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
210429565 GACAAGATTG
* * * *
210429575 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
210429605 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
210429633 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
210429662 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
210429676 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:210429669 original size:29 final size:28
Alignment explanation
Indices: 210429604--210429675 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
210429594 AAAATTGTAC
*
210429604 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
210429632 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
210429661 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
210429676 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:210431608 original size:38 final size:38
Alignment explanation
Indices: 210431525--210431609 Score: 89
Period size: 40 Copynumber: 2.2 Consensus size: 38
210431515 ACAGTACTCT
** * * * *
210431525 ATGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCTAT
1 ATGGTGTACAGGGATGGATGGGTCGATTTTATCCCCAC
*
210431563 ATTTGGTGTACAGGGATGGGTGGGTCGATTTTATCCCCAC
1 A--TGGTGTACAGGGATGGATGGGTCGATTTTATCCCCAC
210431603 ATGGTGT
1 ATGGTGT
210431610 GTTGGGTTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
38 7 0.18
40 31 0.82
ACGTcount: A:0.16, C:0.12, G:0.34, T:0.38
Consensus pattern (38 bp):
ATGGTGTACAGGGATGGATGGGTCGATTTTATCCCCAC
Found at i:210437868 original size:29 final size:29
Alignment explanation
Indices: 210437811--210437942 Score: 115
Period size: 29 Copynumber: 4.6 Consensus size: 29
210437801 AATTTAAGCC
***
210437811 CGCACACATAGTGCCATA-CCCTCCGAGCT
1 CGCACACATAGTGCCATATTTTTCC-AGCT
** *
210437840 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATTTTTCCAGCT
* *
210437869 TGCACACATAGTGTCATATTTTTCCAGCAT
1 CGCACACATAGTGCCATATTTTTCCAGC-T
* * * *
210437899 -GCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATTTTTCCAGCT
*
210437927 CGCACACTTAGTGCCA
1 CGCACACATAGTGCCA
210437943 ATCTCGTCAC
Statistics
Matches: 83, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
29 79 0.95
30 4 0.05
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACATAGTGCCATATTTTTCCAGCT
Found at i:210439135 original size:19 final size:17
Alignment explanation
Indices: 210439101--210439155 Score: 58
Period size: 19 Copynumber: 3.1 Consensus size: 17
210439091 GAATGAACAC
*
210439101 TTTTTTT-TTCTTTTCT
1 TTTTTTTCTTCATTTCT
210439117 TTGTTTTTCTTCATATTCT
1 TT-TTTTTCTTCAT-TTCT
*
210439136 CTTTTTTTTTTCATTTCT
1 -TTTTTTTCTTCATTTCT
210439154 TT
1 TT
210439156 ATTCTTCCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
16 2 0.06
17 7 0.21
18 8 0.24
19 14 0.42
20 2 0.06
ACGTcount: A:0.05, C:0.15, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTTTTTCTTCATTTCT
Found at i:210445792 original size:28 final size:28
Alignment explanation
Indices: 210445741--210445833 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 28
210445731 TCGCACACCC
* * *
210445741 AGTGCCGTATTTTTCCAGCTTGCACACAT
1 AGTGCCATA-TTTTCCAGCATGCACACTT
*
210445770 AGTGTCATATTTTCCAGCATGCACACTT
1 AGTGCCATATTTTCCAGCATGCACACTT
* *
210445798 AGTGCCTTATATTTCCAGCACGCACACTT
1 AGTGCCATAT-TTTCCAGCATGCACACTT
210445827 AGTGCCA
1 AGTGCCA
210445834 ATCTCGTCAC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 25 0.45
29 30 0.55
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (28 bp):
AGTGCCATATTTTCCAGCATGCACACTT
Found at i:210447020 original size:19 final size:17
Alignment explanation
Indices: 210446984--210447040 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 17
210446974 AGAATGAACA
*
210446984 CTTTTTTTT-TTCTTTT
1 CTTTTTTTTCTTCATTT
210447000 CTTTGTTTTTCTTCATATT
1 CTTT-TTTTTCTTCAT-TT
*
210447019 CTCTTTTTTTTTTCATTT
1 CT-TTTTTTTCTTCATTT
210447037 CTTT
1 CTTT
210447041 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
16 4 0.11
17 7 0.20
18 8 0.23
19 14 0.40
20 2 0.06
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (17 bp):
CTTTTTTTTCTTCATTT
Found at i:210447023 original size:21 final size:18
Alignment explanation
Indices: 210446984--210447038 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
210446974 AGAATGAACA
210446984 CTTTTTTTTTTC-TTT-T
1 CTTTTTTTTTTCATTTCT
210447000 CTTTGTTTTTCTTCATATTCT
1 CTTT-TTTTT-TTCAT-TTCT
210447021 CTTTTTTTTTTCATTTCT
1 CTTTTTTTTTTCATTTCT
210447039 TTATTCTTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 7 0.21
19 6 0.18
20 7 0.21
21 5 0.15
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.76
Consensus pattern (18 bp):
CTTTTTTTTTTCATTTCT
Found at i:210452225 original size:66 final size:68
Alignment explanation
Indices: 210452149--210452335 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
210452139 TAGTACCACT
*
210452149 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
210452211 CACG
65 CACG
210452215 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
210452280 ATCACG
63 ATCACG
210452286 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
210452336 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:210452260 original size:71 final size:71
Alignment explanation
Indices: 210452172--210452335 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
210452162 CGATTTGTCT
210452172 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
210452237 CTTTCA
66 CTTTCA
210452243 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
210452308 CTTTCA
66 CTTTCA
210452314 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
210452336 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:210452373 original size:71 final size:70
Alignment explanation
Indices: 210452172--210452369 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
210452162 CGATTTGTCT
* * *
210452172 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
210452237 CTTTCA
65 CTTTCA
* * *
210452243 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
210452308 CTTTCA
65 CTTTCA
* *
210452314 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
210452370 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:210459794 original size:66 final size:68
Alignment explanation
Indices: 210459718--210459904 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
210459708 TAGTACCACT
*
210459718 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
210459780 CACG
65 CACG
210459784 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
210459849 ATCACG
63 ATCACG
210459855 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
210459905 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:210459829 original size:71 final size:71
Alignment explanation
Indices: 210459741--210459904 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
210459731 CGATTTGTCT
210459741 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
210459806 CTTTCA
66 CTTTCA
210459812 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
210459877 CTTTCA
66 CTTTCA
210459883 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
210459905 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:210459942 original size:71 final size:70
Alignment explanation
Indices: 210459741--210459938 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
210459731 CGATTTGTCT
* * *
210459741 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
210459806 CTTTCA
65 CTTTCA
* * *
210459812 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
210459877 CTTTCA
65 CTTTCA
* *
210459883 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
210459939 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:210462455 original size:29 final size:29
Alignment explanation
Indices: 210462422--210462581 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
210462412 GTGACGAGAT
210462422 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
210462451 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
210462480 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
210462509 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
210462538 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
210462567 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
210462582 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:210468976 original size:40 final size:39
Alignment explanation
Indices: 210468890--210469073 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 39
210468880 AAATTGAATG
* * * * *
210468890 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* * *
210468930 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
* *
210468970 ATATCCGGGCCAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
210469010 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
210469049 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
210469074 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 108 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:210477094 original size:40 final size:39
Alignment explanation
Indices: 210477008--210477191 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 39
210476998 AAATTGAATG
* * * * *
210477008 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* * *
210477048 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
* *
210477088 ATATCCGGGCCAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
210477128 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
210477167 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
210477192 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 108 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:210482479 original size:40 final size:40
Alignment explanation
Indices: 210482434--210482600 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
210482424 CGGAATATAA
210482434 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
210482474 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
210482514 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
210482554 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
210482593 CCGGATAT
1 CCGGATAT
210482601 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:210490484 original size:40 final size:40
Alignment explanation
Indices: 210490439--210490606 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
210490429 CGGAATATAA
210490439 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
210490479 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
210490519 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
210490559 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
210490599 CCGGATAT
1 CCGGATAT
210490607 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:210493259 original size:28 final size:28
Alignment explanation
Indices: 210493194--210493292 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
210493184 CATGAGATTG
* * *
210493194 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
210493223 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
210493251 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
210493279 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
210493293 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:210499059 original size:27 final size:28
Alignment explanation
Indices: 210499002--210499071 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
210498992 AAATTTGTAC
**
210499002 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
210499030 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
210499057 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
210499072 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:210507021 original size:27 final size:28
Alignment explanation
Indices: 210506964--210507033 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
210506954 AAATTTGTAC
**
210506964 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
210506992 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
210507019 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
210507034 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:210511137 original size:42 final size:42
Alignment explanation
Indices: 210511083--210511197 Score: 153
Period size: 42 Copynumber: 2.8 Consensus size: 42
210511073 ATTAGGTTAC
210511083 TGAG-ATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGAATT-CGTGTAAGACCATATCTGGGATATGGCATCGATA
*
210511125 TGAGAATTCGTGTAAGACCATATCTGCGATATGGCATCGATA
1 TGAGAATTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* * * * *
210511167 -AAGATTTCATGTAAGACCATAGCTGGCATAT
1 TGAGAATTCGTGTAAGACCATATCTGGGATAT
210511198 TCGTATTGAT
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
41 25 0.38
42 37 0.57
43 3 0.05
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (42 bp):
TGAGAATTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:210516984 original size:29 final size:29
Alignment explanation
Indices: 210516950--210517036 Score: 79
Period size: 29 Copynumber: 2.9 Consensus size: 29
210516940 TAGTGATTTG
210516950 TGAAAATTGAATTAAATTTAAATTTATGTA
1 TGAAAATT-AATTAAATTTAAATTTATGTA
* *
210516980 T-AAAATT-ATACAAAATTAAATTTCATGTA
1 TGAAAATTAAT-TAAATTTAAATTT-ATGTA
* *
210517009 TGAAAATACACATTAAATTAAAATTTAT
1 TGAAAAT-TA-ATTAAATTTAAATTTAT
210517037 ATTTAATTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
27 2 0.04
28 11 0.24
29 12 0.27
30 6 0.13
31 2 0.04
32 10 0.22
33 2 0.04
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.39
Consensus pattern (29 bp):
TGAAAATTAATTAAATTTAAATTTATGTA
Found at i:210522888 original size:5 final size:5
Alignment explanation
Indices: 210522875--210522907 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
210522865 TTGTGTGTTC
*
210522875 TTTAT TTTAC TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
210522908 TTCATAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:210523582 original size:43 final size:43
Alignment explanation
Indices: 210523513--210523668 Score: 167
Period size: 43 Copynumber: 3.6 Consensus size: 43
210523503 TTAGAAAAAA
* *
210523513 CACCGCTAAAGGTCATG-TTCTTTAGCGATGTTTGTGGGGAAAG
1 CACCGCTAAAGGTCATGTTTC-ATAGCGACGTTTGTGGGGAAAG
*
210523556 CACCAG-TAAAGTTCATGTTTCATAGCGACGTTTGTGGGGAAAG
1 CACC-GCTAAAGGTCATGTTTCATAGCGACGTTTGTGGGGAAAG
* * *
210523599 CACCGCTAAAGGTCATG-TTCTTTAGCGGCGCTTGTGGGGAAAG
1 CACCGCTAAAGGTCATGTTTC-ATAGCGACGTTTGTGGGGAAAG
** *
210523642 TGCTGCTAAAGGTCATG-TTCTATAGCG
1 CACCGCTAAAGGTCATGTTTC-ATAGCG
210523669 GCACTTTTCT
Statistics
Matches: 98, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
42 4 0.04
43 90 0.92
44 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
CACCGCTAAAGGTCATGTTTCATAGCGACGTTTGTGGGGAAAG
Found at i:210525954 original size:40 final size:40
Alignment explanation
Indices: 210525791--210525956 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
210525781 AAATTGAATG
* * * **
210525791 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
210525830 ATATCCGGGTTAAGACCCGAAGGCA-ATGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
210525869 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
210525909 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
210525949 ATATCCGG
1 ATATCCGG
210525957 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
39 44 0.43
40 58 0.57
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:210533843 original size:40 final size:40
Alignment explanation
Indices: 210533777--210533927 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
210533767 AAATTGAATG
* * *
210533777 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
210533816 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
210533856 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
210533896 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
210533928 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:210533941 original size:40 final size:40
Alignment explanation
Indices: 210533814--210533943 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
210533804 ATGCTGGAAA
* * *
210533814 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
210533854 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
210533894 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
210533934 TTATATCCGG
1 TTATATCCGG
210533944 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:210536206 original size:20 final size:20
Alignment explanation
Indices: 210536183--210536221 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
210536173 TAAACATGGT
210536183 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
210536203 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
210536222 TGTGTTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:210536363 original size:25 final size:24
Alignment explanation
Indices: 210536272--210536390 Score: 156
Period size: 23 Copynumber: 5.0 Consensus size: 24
210536262 GAGGAAGTGC
210536272 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
210536296 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
210536319 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
210536342 GAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
* *
210536367 GAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
210536391 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 2, Indels: 11
0.87 0.02 0.11
Matches are distributed among these distances:
23 51 0.59
24 6 0.07
25 21 0.24
26 9 0.10
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:210536618 original size:31 final size:31
Alignment explanation
Indices: 210536583--210536646 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
210536573 CGTTTACAGT
210536583 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
210536614 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
210536645 AA
1 AA
210536647 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:210539748 original size:12 final size:12
Alignment explanation
Indices: 210539731--210539762 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
210539721 TAATGTTAGT
210539731 AAAAGAAGAAAA
1 AAAAGAAGAAAA
210539743 AAAAGAA-AAAA
1 AAAAGAAGAAAA
210539754 AAAA-AAGAA
1 AAAAGAAGAA
210539763 TGCTCATCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 2 0.11
11 10 0.53
12 7 0.37
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (12 bp):
AAAAGAAGAAAA
Found at i:210541143 original size:29 final size:29
Alignment explanation
Indices: 210541038--210541143 Score: 142
Period size: 29 Copynumber: 3.7 Consensus size: 29
210541028 GTGACGAGAT
* *
210541038 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAATA
*
210541067 TGGCACTAAGTGTGCGTGCTGG-AAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAATA
*
210541095 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAATA
* **
210541124 CGGCACTGGGTGTGCGAGCT
1 TGGCACTAAGTGTGCGAGCT
210541144 CGGAGGGTAT
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.36
29 44 0.64
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:210549172 original size:29 final size:29
Alignment explanation
Indices: 210549066--210549227 Score: 150
Period size: 29 Copynumber: 5.6 Consensus size: 29
210549056 GTGACGAGAT
*
210549066 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
210549095 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* *
210549124 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* ** ***
210549153 CGGCACTGGGTGTGCGAGCTCGG-AGGGTA
1 TGGCACTAAGTGTGCGAGCT-GGAAATATA
** *
210549182 TGGCACTGTGTGTGCGAGCT-TAAAT-TA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
210549209 CGTGGCACTAAGTGTGCGA
1 --TGGCACTAAGTGTGCGA
210549228 AATCGAGTAG
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 2 0.02
28 1 0.01
29 105 0.95
30 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:210557559 original size:40 final size:40
Alignment explanation
Indices: 210557485--210557662 Score: 283
Period size: 40 Copynumber: 4.5 Consensus size: 40
210557475 AACCCAAGTA
* *
210557485 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
210557524 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
210557564 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
210557604 CCTTCGGGACTTAGCCC-GATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
210557642 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
210557663 GTCATCCGAA
Statistics
Matches: 131, Mismatches: 5, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
38 20 0.15
39 32 0.24
40 78 0.60
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:210566008 original size:40 final size:40
Alignment explanation
Indices: 210565934--210566112 Score: 292
Period size: 40 Copynumber: 4.5 Consensus size: 40
210565924 AACCCAAGTA
* *
210565934 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
210565973 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
210566013 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
210566053 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
210566092 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
210566113 GTCATCCGAA
Statistics
Matches: 133, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
39 37 0.28
40 95 0.71
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:210570468 original size:40 final size:40
Alignment explanation
Indices: 210570409--210570577 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
210570399 CGGGACTTTA
* * *
210570409 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
210570449 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
210570489 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
210570529 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
210570569 CCCGGATAT
1 CCCGGATAT
210570578 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:210578588 original size:39 final size:40
Alignment explanation
Indices: 210578416--210578592 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
210578406 ACCAAGGCCA
* * * * * *
210578416 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * *
210578455 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCAC-AATTGCCTT
*
210578495 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * * * *
210578535 CGGGTCTTAACCCGGATATAATTTC-AGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
*
210578574 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
210578593 CATTCAATTT
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 39 0.33
40 77 0.65
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
Found at i:210588097 original size:29 final size:27
Alignment explanation
Indices: 210588063--210588165 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
210588053 TACTCAATCA
*
210588063 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
210588092 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
210588121 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
210588150 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
210588166 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:210596107 original size:29 final size:27
Alignment explanation
Indices: 210596073--210596175 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
210596063 TACTCAATCA
*
210596073 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
210596102 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
210596131 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
210596160 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
210596176 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:210601183 original size:30 final size:30
Alignment explanation
Indices: 210601147--210601209 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
210601137 CCTTTTCATA
210601147 TTTCATATTTCATAACACTGGGCCGAAGCC
1 TTTCATATTTCATAACACTGGGCCGAAGCC
**
210601177 TTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTCATATTTCATAACACTGGGCCGAAGCC
210601207 TTT
1 TTT
210601210 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (30 bp):
TTTCATATTTCATAACACTGGGCCGAAGCC
Found at i:210601483 original size:22 final size:23
Alignment explanation
Indices: 210601420--210601582 Score: 260
Period size: 22 Copynumber: 7.1 Consensus size: 23
210601410 CCTAGCCTCT
*
210601420 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
210601443 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
210601467 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
210601489 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
210601511 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
210601534 TTTTGATAACT-GGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
210601557 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
210601580 TTT
1 TTT
210601583 TCACTTCCTC
Statistics
Matches: 132, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
22 52 0.39
23 49 0.37
24 31 0.23
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:210601490 original size:46 final size:46
Alignment explanation
Indices: 210601420--210601583 Score: 278
Period size: 46 Copynumber: 3.6 Consensus size: 46
210601410 CCTAGCCTCT
*
210601420 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACT-GGGCATAAGCCC
210601467 TTTAATAACT-GGGCATAAGCCC-TTTAATAACTGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCC
* *
210601511 TTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCC
210601557 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
210601584 CACTTCCTCC
Statistics
Matches: 111, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
44 21 0.19
45 22 0.20
46 58 0.52
47 10 0.09
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (46 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCC
Found at i:210601657 original size:20 final size:20
Alignment explanation
Indices: 210601632--210601670 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
210601622 TATGATTACA
210601632 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
210601652 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
210601671 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:210601676 original size:20 final size:20
Alignment explanation
Indices: 210601633--210601677 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
210601623 ATGATTACAT
**
210601633 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
210601653 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
210601673 CATGT
1 CATGT
210601678 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:210601746 original size:25 final size:25
Alignment explanation
Indices: 210601714--210601761 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
210601704 ATACATAAAC
* * *
210601714 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
210601739 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
210601762 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:210607618 original size:40 final size:40
Alignment explanation
Indices: 210607539--210607715 Score: 209
Period size: 40 Copynumber: 4.5 Consensus size: 40
210607529 CGGATGATAA
* * * *
210607539 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATAT
* * * *
210607579 CCGGGCTATGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
* *
210607619 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
210607659 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATAT
210607699 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
210607716 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 101 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATAT
Found at i:210607677 original size:80 final size:80
Alignment explanation
Indices: 210607539--210607715 Score: 243
Period size: 80 Copynumber: 2.2 Consensus size: 80
210607529 CGGATGATAA
* * * * *
210607539 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTA
*
210607604 TGCTAG-TGATTATAT
66 TGCGAGTTG-TTATAT
* *
210607619 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTA
210607684 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
210607699 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
210607716 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 71 0.82
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGTTATAT
Found at i:210607983 original size:22 final size:22
Alignment explanation
Indices: 210607943--210607984 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
210607933 GAATGTGCAT
*
210607943 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
210607965 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
210607985 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:210619525 original size:40 final size:40
Alignment explanation
Indices: 210619480--210619646 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
210619470 CGGAATATAA
210619480 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
210619520 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
210619560 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
210619600 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
210619639 CCGGATAT
1 CCGGATAT
210619647 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:210619630 original size:80 final size:79
Alignment explanation
Indices: 210619496--210619644 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
210619486 ATAATCACGT
*
210619496 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
210619561 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
210619576 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
210619639 CCGGAT
64 CCGGAT
210619645 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:210630052 original size:39 final size:39
Alignment explanation
Indices: 210630008--210630171 Score: 138
Period size: 39 Copynumber: 4.2 Consensus size: 39
210629998 CGGAATATAA
210630008 CCGGATATATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
210630047 CCGGATAGAATAACTCGCACGAATGCCTTC-GGCCTTAGC
1 CCGGATA-TATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
210630086 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTA-A
1 CCGGATAT-ATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
210630125 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATAT-ATCACTAGCACAAATGCCTTCGGGTCTTAGC
210630164 CCGGATAT
1 CCGGATAT
210630172 CATTCAATTT
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
38 4 0.04
39 74 0.73
40 23 0.23
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CCGGATATATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:210631014 original size:17 final size:19
Alignment explanation
Indices: 210630991--210631036 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
210630981 AAGAAGCATG
210630991 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
210631009 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
210631027 AATCATGCTC
1 AATCATGCTC
210631037 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:210634667 original size:55 final size:55
Alignment explanation
Indices: 210634563--210634667 Score: 122
Period size: 55 Copynumber: 1.9 Consensus size: 55
210634553 TAACTTTCAA
* ** * *
210634563 ACACGGCTATGGTACACGCCCATGCTGCCTGTCCGTGTTCAATATTAACTTTAGG
1 ACACGGCTATGGGACACGCCCATGCTGCCTACCCGTGTCCAATACTAACTTTAGG
* * *
210634618 ACACGGTTATGGGACACGCCCGTG-TGACCTACCCGTGTCCTATACTAACT
1 ACACGGCTATGGGACACGCCCATGCTG-CCTACCCGTGTCCAATACTAACT
210634668 CAAAATTTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
54 2 0.05
55 39 0.95
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (55 bp):
ACACGGCTATGGGACACGCCCATGCTGCCTACCCGTGTCCAATACTAACTTTAGG
Found at i:210640814 original size:93 final size:92
Alignment explanation
Indices: 210640656--210640825 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
210640646 GGATGGTTGA
*
210640656 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTT
210640721 GAGTCCGAGTTCGTGAAATGTAACTGG
66 GAGTCCGAGTTCGTGAAATGTAACTGG
*
210640748 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
*
210640813 TGAGTCCTAGTTC
65 TGAGTCCGAGTTC
210640826 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 24 0.32
93 50 0.68
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTGG
Found at i:210640825 original size:46 final size:45
Alignment explanation
Indices: 210640660--210640833 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 45
210640650 GGTTGAGCAT
210640660 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
210640704 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTGGGCAT-
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-TGCGAATG
210640752 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
210640797 CCCGAGCTCGTTGAGTTGAGTCCTAGTTCACTTATGG
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
210640834 GCAGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
44 5 0.05
45 22 0.20
46 44 0.40
47 31 0.28
48 2 0.02
49 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:210640964 original size:21 final size:21
Alignment explanation
Indices: 210640939--210640982 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
210640929 CTACTCAAAT
210640939 GGAGGAATACTCGAGATGAAA
1 GGAGGAATACTCGAGATGAAA
210640960 GGAGGAATACTCGAGATGAAA
1 GGAGGAATACTCGAGATGAAA
210640981 GG
1 GG
210640983 GACGTAGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.36, T:0.14
Consensus pattern (21 bp):
GGAGGAATACTCGAGATGAAA
Found at i:210642809 original size:40 final size:40
Alignment explanation
Indices: 210642762--210642905 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
210642752 CTCCCCCAAG
* * *
210642762 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
210642802 GCCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
210642842 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAAT
210642883 GCCTTCGGGACTTAG-CCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
210642906 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 3 0.03
40 65 0.71
41 20 0.22
42 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:210648558 original size:31 final size:30
Alignment explanation
Indices: 210648536--210648591 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 30
210648526 GCCGTATTTT
**
210648536 TTTCCAGCTTGCACACTTAGTGCC-ATATA
1 TTTCCAGCACGCACACTTAGTGCCGATATA
210648565 TTTCCAGCACGCACACTTAGTGCCGAT
1 TTTCCAGCACGCACACTTAGTGCCGAT
210648592 CTCGTCACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 22 0.92
30 2 0.08
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.30
Consensus pattern (30 bp):
TTTCCAGCACGCACACTTAGTGCCGATATA
Found at i:210656362 original size:29 final size:29
Alignment explanation
Indices: 210656334--210656435 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
210656324 CCTCCGAGCT
** * * *
210656334 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
210656363 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
210656392 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
210656421 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
210656436 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:210658065 original size:40 final size:38
Alignment explanation
Indices: 210657944--210658068 Score: 137
Period size: 38 Copynumber: 3.2 Consensus size: 38
210657934 NNNNNNNNNN
* * *
210657944 CCGGATATGGTCACTAGCATAAATGCTTCGGGACTTAGC
1 CCGGATATAGTCGCTAGCACAAA-GCTTCGGGACTTAGC
* *
210657983 CCGGATATAGTCGCTAGCACAATGCTTC-GGATCTTAGT
1 CCGGATATAGTCGCTAGCACAAAGCTTCGGGA-CTTAGC
*
210658021 CCGGATGTAG-CGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCGC-TAGCAC-AAAG-CTTCGGGACTTAGC
210658061 CCGGATAT
1 CCGGATAT
210658069 CATTCGAGTA
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
37 6 0.08
38 25 0.35
39 22 0.31
40 16 0.22
41 3 0.04
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (38 bp):
CCGGATATAGTCGCTAGCACAAAGCTTCGGGACTTAGC
Found at i:210665781 original size:39 final size:40
Alignment explanation
Indices: 210665735--210665902 Score: 124
Period size: 40 Copynumber: 4.2 Consensus size: 40
210665725 CGGGGTTTAT
* * *
210665735 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAGC
* *** *
210665774 TCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAGC
** * * * *
210665814 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAGC
* ** * * *
210665854 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAGC
210665895 CCGGATAT
1 CCGGATAT
210665903 CATTCGAGTA
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 17 0.16
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAGC
Found at i:210665885 original size:41 final size:40
Alignment explanation
Indices: 210665758--210665902 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
210665748 CTCGCACAAG
* * * * *
210665758 GCCTTCGGGTCTTAGCTCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
210665798 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
210665838 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
210665879 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
210665903 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:210676616 original size:80 final size:80
Alignment explanation
Indices: 210676532--210676680 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
210676522 TATGGTAACC
* * * *
210676532 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
210676596 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
210676612 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
210676677 CCGG
66 CCGG
210676681 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:210676622 original size:40 final size:38
Alignment explanation
Indices: 210676573--210676680 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
210676563 ATCACGATTT
*
210676573 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
210676613 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
210676653 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
210676681 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:210684733 original size:80 final size:80
Alignment explanation
Indices: 210684649--210684797 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
210684639 TATGGTAACC
* * * *
210684649 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
210684713 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
210684729 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
210684794 CCGG
66 CCGG
210684798 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:210684739 original size:40 final size:38
Alignment explanation
Indices: 210684690--210684797 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
210684680 ATCACGATTT
*
210684690 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
210684730 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
210684770 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
210684798 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:210695193 original size:40 final size:40
Alignment explanation
Indices: 210695127--210695293 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
210695117 AAATTGAATG
* * *
210695127 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
210695166 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
210695206 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
210695246 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
210695286 ATATCCGG
1 ATATCCGG
210695294 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:210699205 original size:40 final size:40
Alignment explanation
Indices: 210699148--210699237 Score: 153
Period size: 40 Copynumber: 2.2 Consensus size: 40
210699138 TATGTGCATA
* *
210699148 GCATTCGTGCGGGTTATTATAACCAGGTTAAGTCTCGAAG
1 GCATTCGTGCGGATTATTATAACCAGGTTAAGTCCCGAAG
*
210699188 GCATTCGTGCGGATTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGATTATTATAACCAGGTTAAGTCCCGAAG
210699228 GCATTCGTGC
1 GCATTCGTGC
210699238 TGGTTGTTAC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGATTATTATAACCAGGTTAAGTCCCGAAG
Found at i:210704377 original size:47 final size:46
Alignment explanation
Indices: 210704303--210704575 Score: 160
Period size: 48 Copynumber: 5.7 Consensus size: 46
210704293 GTATAATGCT
* * * *
210704303 GATGCCATATCCCAGACATGATTTTACACTGGCTCATCCATCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCCATCAAGCC
* * * *
210704350 GATGCCATGTCCCAGACATGGTCTTACAATGACTATCAAAATCAAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC--CATCAA-GCC
* * * * * *
210704399 GACGCTAGGTCCAAGACATGGTCTTACACTAGCTCTCACATATCTATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-C--ATC-AAGCC
* * * * * *
210704449 GATGCCATGTCCCAAACATGGTCTTACAGTGACACCTCTAT-ATTTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCCATCA--AGCC
* * * *
210704497 GATGCCATGTCCTAGAAATGGTCTTACACTGCCTCT-CAT-AATGTGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCCATCAA----GCC
210704545 GATG-CATGTCCCAGACAT-GTCTTACACTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC
210704576 ACACAAATAA
Statistics
Matches: 173, Mismatches: 40, Indels: 27
0.72 0.17 0.11
Matches are distributed among these distances:
46 18 0.10
47 43 0.25
48 46 0.27
49 31 0.18
50 31 0.18
51 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCCATCAAGCC
Found at i:210709130 original size:40 final size:40
Alignment explanation
Indices: 210709022--210709231 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
210709012 CGGGATTTAA
* * * * *
210709022 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
210709062 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
210709102 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
210709142 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
210709182 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
210709222 CCGGATATAT
1 CCGGATATAT
210709232 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:210717785 original size:28 final size:25
Alignment explanation
Indices: 210717746--210717887 Score: 97
Period size: 24 Copynumber: 5.6 Consensus size: 25
210717736 GTGACGAGAT
210717746 TGGCACTAAGTGTGCGTGCTGGAAATA-TA
1 TGGCACT-AGTGTGCGT--TGG--ATACTA
210717775 TGGCACTAGTGTGCGTTGGATACTA
1 TGGCACTAGTGTGCGTTGGATACTA
210717800 TGGCACTATGTGTGCGATT---TACTA
1 TGGCACTA-GTGTGCG-TTGGATACTA
210717824 TGGCACTATGTGTGCGATT---TACTA
1 TGGCACTA-GTGTGCG-TTGGATACTA
*
210717848 TGGCACTATGTGTGCGATTCG---CTA
1 TGGCACTA-GTGTGCG-TTGGATACTA
210717872 TGGCACTATGTGTGCG
1 TGGCACTA-GTGTGCG
210717888 AACATAATAA
Statistics
Matches: 108, Mismatches: 0, Indels: 15
0.88 0.00 0.12
Matches are distributed among these distances:
24 70 0.65
25 10 0.09
26 10 0.09
27 2 0.02
28 9 0.08
29 7 0.06
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.33
Consensus pattern (25 bp):
TGGCACTAGTGTGCGTTGGATACTA
Found at i:210717811 original size:24 final size:23
Alignment explanation
Indices: 210717773--210717888 Score: 153
Period size: 24 Copynumber: 4.8 Consensus size: 23
210717763 GCTGGAAATA
*
210717773 TATGGCACTA-GTGTGCGTTGGATAC
1 TATGGCACTATGTGTGCGAT---TAC
210717798 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGA-TTAC
210717822 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGA-TTAC
*
210717846 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATT-AC
210717870 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
210717889 ACATAATAAG
Statistics
Matches: 86, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
23 2 0.02
24 66 0.77
25 10 0.12
26 7 0.08
27 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.34
Consensus pattern (23 bp):
TATGGCACTATGTGTGCGATTAC
Found at i:210717852 original size:48 final size:49
Alignment explanation
Indices: 210717773--210717888 Score: 175
Period size: 48 Copynumber: 2.4 Consensus size: 49
210717763 GCTGGAAATA
*
210717773 TATGGCACTA-GTGTGCG-TTGGATACTATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATT-G-TACTATGGCACTATGTGTGCGATTCAC
*
210717822 TATGGCACTATGTGTGCGATT-TACTATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTGTACTATGGCACTATGTGTGCGATTCAC
210717870 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
210717889 ACATAATAAG
Statistics
Matches: 63, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
48 44 0.70
49 10 0.16
50 7 0.11
51 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.34
Consensus pattern (49 bp):
TATGGCACTATGTGTGCGATTGTACTATGGCACTATGTGTGCGATTCAC
Found at i:210717902 original size:48 final size:48
Alignment explanation
Indices: 210717802--210717910 Score: 148
Period size: 48 Copynumber: 2.3 Consensus size: 48
210717792 GGATACTATG
* ** * *
210717802 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATA
*
210717850 GCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATAATATA
210717898 GCACTATGTGTGC
1 GCACTATGTGTGC
210717911 CACATTCGGT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 49 0.91
49 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATA
Found at i:210725664 original size:28 final size:26
Alignment explanation
Indices: 210725625--210725743 Score: 94
Period size: 24 Copynumber: 4.6 Consensus size: 26
210725615 GTGACGAGAT
210725625 TGGCACTAAGTGTGCGTGCTGGAAATA-TA
1 TGGCACT-AGTGTGCGTGCT-G--ATACTA
210725654 TGGCACTAGTGTGCGTGCTGATACTA
1 TGGCACTAGTGTGCGTGCTGATACTA
210725680 TGGCACTA-TGT--GTGC-GATTTACTA
1 TGGCACTAGTGTGCGTGCTGA--TACTA
210725704 TGGCACTA-TGT--GTGC-GATTTACTA
1 TGGCACTAGTGTGCGTGCTGA--TACTA
210725728 TGGCACTATGTGTGCG
1 TGGCACTA-GTGTGCG
210725744 ATTCGCTATG
Statistics
Matches: 83, Mismatches: 0, Indels: 15
0.85 0.00 0.15
Matches are distributed among these distances:
22 2 0.02
23 4 0.05
24 37 0.45
25 6 0.07
26 13 0.16
27 1 0.01
28 13 0.16
29 7 0.08
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (26 bp):
TGGCACTAGTGTGCGTGCTGATACTA
Found at i:210725707 original size:24 final size:24
Alignment explanation
Indices: 210725675--210725768 Score: 170
Period size: 24 Copynumber: 3.9 Consensus size: 24
210725665 TGCGTGCTGA
210725675 TACTATGGCACTATGTGTGCGATT
1 TACTATGGCACTATGTGTGCGATT
210725699 TACTATGGCACTATGTGTGCGATT
1 TACTATGGCACTATGTGTGCGATT
210725723 TACTATGGCACTATGTGTGCGATT
1 TACTATGGCACTATGTGTGCGATT
**
210725747 CGCTATGGCACTATGTGTGCGA
1 TACTATGGCACTATGTGTGCGA
210725769 ACATAATAAG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 68 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (24 bp):
TACTATGGCACTATGTGTGCGATT
Found at i:210725782 original size:48 final size:48
Alignment explanation
Indices: 210725682--210725790 Score: 148
Period size: 48 Copynumber: 2.3 Consensus size: 48
210725672 TGATACTATG
* ** * *
210725682 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATA
*
210725730 GCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATAATATA
210725778 GCACTATGTGTGC
1 GCACTATGTGTGC
210725791 CACATTCGGT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 49 0.91
49 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATA
Found at i:210733540 original size:29 final size:29
Alignment explanation
Indices: 210733507--210733580 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
210733497 GTGACGAGAT
210733507 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
210733536 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
210733565 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
210733581 ATTTACTATG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:210733590 original size:24 final size:24
Alignment explanation
Indices: 210733563--210733700 Score: 251
Period size: 24 Copynumber: 5.8 Consensus size: 24
210733553 GCTGGAAATA
210733563 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
210733587 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
210733611 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
210733635 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
210733659 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
210733683 TATGGCACTATG-GTGCGA
1 TATGGCACTATGTGTGCGA
210733701 ACATAATAAG
Statistics
Matches: 112, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
23 6 0.05
24 106 0.95
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:210736645 original size:46 final size:46
Alignment explanation
Indices: 210736591--210736763 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
210736581 TGGTTGAGCA
*
210736591 TCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
210736637 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
210736682 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
210736730 -CTCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
210736764 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 57 0.55
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:210736747 original size:93 final size:93
Alignment explanation
Indices: 210736588--210736758 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
210736578 GGATGGTTGA
* *
210736588 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCATTGAGT
210736653 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
210736681 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCATTGAG
1 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CAAACTCATTGAG
210736745 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
210736759 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:210743737 original size:46 final size:46
Alignment explanation
Indices: 210743687--210743859 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
210743677 TGGTTGAGCA
*
210743687 TCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
210743733 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
210743778 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
210743826 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
210743860 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.56
47 27 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Done.