Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 670 of 770
Found at i:210743843 original size:93 final size:93
Alignment explanation
Indices: 210743684--210743854 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
210743674 GGATGGTTGA
* *
210743684 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
210743749 TGAGT-TCGAGTTCGTGAAATGTAACTAG
66 TGAGTCT-GAGTTCGTGAAATGTAACTAG
* * *
210743777 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
210743842 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
210743855 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAAATGTAACTAG
Found at i:210749441 original size:30 final size:30
Alignment explanation
Indices: 210749405--210749535 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
210749395 GACAAGATTG
* * * * *
210749405 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
210749435 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
210749463 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
210749493 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
210749522 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
210749536 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:210749496 original size:58 final size:58
Alignment explanation
Indices: 210749405--210749535 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
210749395 GACAAGATTG
* * * * * *
210749405 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
210749463 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
210749522 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
210749536 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:210755871 original size:30 final size:30
Alignment explanation
Indices: 210755835--210755965 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
210755825 GACAAGATTG
* * * * *
210755835 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
210755865 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
210755893 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
210755923 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
210755952 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
210755966 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:210755926 original size:58 final size:58
Alignment explanation
Indices: 210755835--210755965 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
210755825 GACAAGATTG
* * * * * *
210755835 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
210755893 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
210755952 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
210755966 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:210762776 original size:2 final size:2
Alignment explanation
Indices: 210762769--210762799 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
210762759 GATTCATGAG
210762769 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
210762800 TTGACTGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:210766295 original size:28 final size:28
Alignment explanation
Indices: 210766226--210766326 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
210766216 GACAAGATTG
* * * *
210766226 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
210766256 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
210766284 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
210766313 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
210766327 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:210774244 original size:28 final size:28
Alignment explanation
Indices: 210774175--210774275 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
210774165 GACAAGATTG
* * * *
210774175 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
210774205 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
210774233 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
210774262 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
210774276 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:210782899 original size:29 final size:29
Alignment explanation
Indices: 210782865--210782942 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
210782855 GTGACGAGAT
* *
210782865 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
210782894 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
210782923 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
210782943 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:210795945 original size:27 final size:27
Alignment explanation
Indices: 210795915--210795974 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
210795905 GGCATAATCA
210795915 TCATTCTACCA-TACAAGGGTATTACGG
1 TCATT-TACCACTACAAGGGTATTACGG
** *
210795942 TCATTTTGCACTACAAGGGTATTTCGG
1 TCATTTACCACTACAAGGGTATTACGG
*
210795969 TGATTT
1 TCATTT
210795975 TACAAACTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
TCATTTACCACTACAAGGGTATTACGG
Found at i:210801047 original size:40 final size:40
Alignment explanation
Indices: 210800962--210801112 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
210800952 AATTGAATGA
* * *
210800962 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
210801002 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
210801043 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
210801082 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
210801113 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:210801126 original size:40 final size:40
Alignment explanation
Indices: 210800999--210801128 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
210800989 ATGCTGGAAA
* * * *
210800999 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
210801039 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
210801079 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
210801119 TTATATCCGG
1 TTATATCCGG
210801129 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:210807962 original size:40 final size:40
Alignment explanation
Indices: 210807752--210807955 Score: 353
Period size: 39 Copynumber: 5.2 Consensus size: 40
210807742 AACCCAAGTA
* *
210807752 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
210807791 CCTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
210807830 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
210807870 CCTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
210807909 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
210807949 CCTTCGG
1 CCTTCGG
210807956 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 2, Indels: 7
0.95 0.01 0.04
Matches are distributed among these distances:
39 90 0.57
40 69 0.43
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:210807962 original size:79 final size:79
Alignment explanation
Indices: 210807752--210807955 Score: 367
Period size: 79 Copynumber: 2.6 Consensus size: 79
210807742 AACCCAAGTA
* *
210807752 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
210807815 GTACTAGCACAAATG
65 GTACTAGCACAAATG
210807830 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
210807895 TACTAGCACAAATG
66 TACTAGCACAAATG
210807909 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGG
210807956 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
78 13 0.11
79 108 0.89
80 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TACTAGCACAAATG
Found at i:210809349 original size:13 final size:13
Alignment explanation
Indices: 210809331--210809356 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
210809321 ATTTTTATTT
210809331 TTAACATAAAATA
1 TTAACATAAAATA
210809344 TTAACATAAAATA
1 TTAACATAAAATA
210809357 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:210816080 original size:118 final size:113
Alignment explanation
Indices: 210815867--210816112 Score: 395
Period size: 118 Copynumber: 2.1 Consensus size: 113
210815857 AACCCAAGTA
* *
210815867 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTGGACTTAGCCGGATATATACTA
1 CCTTC-GGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTGGACTTAGCCGGATATATACTA
210815932 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
65 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
210815981 CCTTCGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGACTTAGCCCGGATATAGT
1 CCTTCGGACTTAG-CCGGATATAG-CAACTAGCACAAATGCCTT-GGACTTAG-CCGGATATA-T
210816045 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
61 -ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
210816099 CCTTCGGATCTTAG
1 CCTTCGGA-CTTAG
210816113 TCATCATCCG
Statistics
Matches: 123, Mismatches: 2, Indels: 9
0.92 0.01 0.07
Matches are distributed among these distances:
113 7 0.06
114 31 0.25
115 9 0.07
116 9 0.07
117 1 0.01
118 61 0.50
119 5 0.04
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (113 bp):
CCTTCGGACTTAGCCGGATATAGCAACTAGCACAAATGCCTTGGACTTAGCCGGATATATACTAG
CACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:210816112 original size:40 final size:39
Alignment explanation
Indices: 210815867--210816112 Score: 378
Period size: 39 Copynumber: 6.3 Consensus size: 39
210815857 AACCCAAGTA
* *
210815867 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTC-GGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
210815906 CCTT-GGACTTAG-CCGGATATA-T-ACTAGCACAAATG
1 CCTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATG
210815941 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATG
210815981 CCTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
210816020 CCTTCGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATG
210816059 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATG
210816099 CCTTCGGATCTTAG
1 CCTTCGGA-CTTAG
210816113 TCATCATCCG
Statistics
Matches: 195, Mismatches: 4, Indels: 15
0.91 0.02 0.07
Matches are distributed among these distances:
35 16 0.08
37 24 0.12
38 9 0.05
39 85 0.44
40 61 0.31
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:210817494 original size:13 final size:13
Alignment explanation
Indices: 210817476--210817501 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
210817466 ATTTTTATTT
210817476 TTAACATAAAATA
1 TTAACATAAAATA
210817489 TTAACATAAAATA
1 TTAACATAAAATA
210817502 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:210825054 original size:29 final size:29
Alignment explanation
Indices: 210825022--210825099 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
210825012 ATACCCTCCG
** *
210825022 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
210825051 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
210825080 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
210825100 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:210832730 original size:29 final size:29
Alignment explanation
Indices: 210832698--210832775 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
210832688 ATACCCTCCG
** *
210832698 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
210832727 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
210832756 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
210832776 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:210836663 original size:80 final size:80
Alignment explanation
Indices: 210836579--210836727 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
210836569 TATGGTAACC
* * * *
210836579 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
210836643 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
210836659 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
210836724 CCGG
66 CCGG
210836728 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:210836669 original size:40 final size:38
Alignment explanation
Indices: 210836620--210836727 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
210836610 ATCACGATTT
*
210836620 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
210836660 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
210836700 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
210836728 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:210844752 original size:80 final size:80
Alignment explanation
Indices: 210844668--210844816 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
210844658 TATGGTAACC
* * * *
210844668 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
210844732 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
210844748 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
210844813 CCGG
66 CCGG
210844817 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:210844758 original size:40 final size:38
Alignment explanation
Indices: 210844709--210844816 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
210844699 ATCACGATTT
*
210844709 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
210844749 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
210844789 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
210844817 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:210848359 original size:93 final size:93
Alignment explanation
Indices: 210848247--210848417 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
210848237 CGCCCTAAGT
* * *
210848247 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
210848312 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
210848340 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
210848405 CGAGTTCGGATGC
66 CGAGTTCGGATGC
210848418 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:210848414 original size:46 final size:46
Alignment explanation
Indices: 210848242--210848414 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
210848232 TAACCCGCCC
* * * *
210848242 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
* *
210848288 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* *
210848336 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
210848381 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
210848415 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:210850097 original size:26 final size:27
Alignment explanation
Indices: 210850018--210850126 Score: 123
Period size: 27 Copynumber: 4.1 Consensus size: 27
210850008 GGCCGAAATG
* *
210850018 ATGACCAAAATACCCTTATAGAGTAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
* *
210850045 ATGACCGAAATACCCTCATAGGATAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
*
210850072 ATGATCAAAATACCC-CATAGGGTAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
* * *
210850098 ATCAACAAAATACCC-CTATAAGGTAAA
1 ATGACCAAAATACCCTC-ATAGGGTAAA
210850125 AT
1 AT
210850127 AACTGTAATA
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 24 0.34
27 47 0.66
ACGTcount: A:0.48, C:0.20, G:0.12, T:0.20
Consensus pattern (27 bp):
ATGACCAAAATACCCTCATAGGGTAAA
Found at i:210850136 original size:27 final size:27
Alignment explanation
Indices: 210850080--210850185 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 27
210850070 AAATGATCAA
* **
210850080 AATACCCC-ATAGGGTAAAATCAAC-AA
1 AATACCCCTATAAGGTAAAAT-AACTGT
210850106 AATACCCCTATAAGGTAAAATAACTGT
1 AATACCCCTATAAGGTAAAATAACTGT
* * *
210850133 AATACCCCTGTAGGGTAAAATGACTGT
1 AATACCCCTATAAGGTAAAATAACTGT
* *
210850160 AATACCCCTGTAAGGTAAAATGACTG
1 AATACCCCTATAAGGTAAAATAACTG
210850186 ATTTGCCCTA
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
26 11 0.15
27 60 0.85
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.23
Consensus pattern (27 bp):
AATACCCCTATAAGGTAAAATAACTGT
Found at i:210853456 original size:27 final size:27
Alignment explanation
Indices: 210853420--210853535 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
210853410 GGCCGAAATG
*
210853420 ATGACTGAAATA-CCCTCATAGGGTAAA
1 ATGACTGAAATACCCCT-ATAAGGTAAA
*
210853447 ATGACCGAAATACCCCTATAAGGTAAA
1 ATGACTGAAATACCCCTATAAGGTAAA
* ** *
210853474 ATGACTGTAATACCCCTGCAGGGTAAA
1 ATGACTGAAATACCCCTATAAGGTAAA
* * *
210853501 ATAACTGTAATACCCCTGTAAGGTAAA
1 ATGACTGAAATACCCCTATAAGGTAAA
*
210853528 GTGACTGA
1 ATGACTGA
210853536 TTTTCCCTAT
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
27 71 0.95
28 4 0.05
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (27 bp):
ATGACTGAAATACCCCTATAAGGTAAA
Found at i:210853980 original size:34 final size:34
Alignment explanation
Indices: 210853933--210853997 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
210853923 ATTACTGCAC
* *
210853933 TGATACTGTTACTGTAATAGGCTAAGGCCCACAT
1 TGATACTGATACTGTAACAGGCTAAGGCCCACAT
* *
210853967 TGATACTGATACTGTAACGGGCTGAGGCCCA
1 TGATACTGATACTGTAACAGGCTAAGGCCCA
210853998 AACTGCATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.26
Consensus pattern (34 bp):
TGATACTGATACTGTAACAGGCTAAGGCCCACAT
Found at i:210855625 original size:30 final size:29
Alignment explanation
Indices: 210855531--210855632 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
210855521 TATAGTGAAT
* * *
210855531 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
210855560 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
210855588 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
210855618 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
210855633 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:210855766 original size:16 final size:17
Alignment explanation
Indices: 210855734--210855766 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
210855724 CATCATTCCA
*
210855734 TACACATACATTTCATT
1 TACACATACAATTCATT
210855751 TACACAT-CAATTCATT
1 TACACATACAATTCATT
210855767 AAACACATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.39
Consensus pattern (17 bp):
TACACATACAATTCATT
Found at i:210863481 original size:27 final size:27
Alignment explanation
Indices: 210863450--210863518 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
210863440 ATAGTGAATC
* *
210863450 CGCACACTTAGT-CTATATATTTC-AGCT
1 CGCACACTTAGTGCTATAGA--TCAAACT
210863477 CGCACACTTAGTGCTATAGATCAAACT
1 CGCACACTTAGTGCTATAGATCAAACT
210863504 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
210863519 GTACAATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 2 0.05
27 30 0.79
28 6 0.16
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAGATCAAACT
Found at i:210865825 original size:1 final size:1
Alignment explanation
Indices: 210865819--210865884 Score: 69
Period size: 1 Copynumber: 66.0 Consensus size: 1
210865809 ATTTGATTTC
* * * * * * *
210865819 TTTTTTTTTTATTTTTTTCTTGTCTTTTTTTTTCTTTTTGTTTTTTTTTTTTTTTTTTTTTCTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
210865884 T
1 T
210865885 CATGACTGTC
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.02, C:0.06, G:0.03, T:0.89
Consensus pattern (1 bp):
T
Found at i:210865846 original size:13 final size:11
Alignment explanation
Indices: 210865815--210865885 Score: 76
Period size: 11 Copynumber: 6.4 Consensus size: 11
210865805 TGGCATTTGA
210865815 TTTCTTTTTTT
1 TTTCTTTTTTT
*
210865826 TTTATTTTTTT
1 TTTCTTTTTTT
210865837 CTTGTC-TTTTTT
1 -TT-TCTTTTTTT
210865849 TTTCTTTTTGTT
1 TTTCTTTTT-TT
210865861 TTT-TTTTTTT
1 TTTCTTTTTTT
210865871 TTT-TTTTTTCT
1 TTTCTTTTTT-T
210865882 TTTC
1 TTTC
210865886 ATGACTGTCG
Statistics
Matches: 52, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
10 13 0.25
11 25 0.48
12 13 0.25
13 1 0.02
ACGTcount: A:0.01, C:0.08, G:0.03, T:0.87
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:210865856 original size:28 final size:28
Alignment explanation
Indices: 210865819--210865884 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
210865809 ATTTGATTTC
*
210865819 TTTTTTT-TTTAT-TTTTTTCTTGTCTT
1 TTTTTTTCTTTTTGTTTTTTCTTGTCTT
* * *
210865845 TTTTTTTCTTTTTGTTTTTTTTTTTTTT
1 TTTTTTTCTTTTTGTTTTTTCTTGTCTT
210865873 TTTTTTTCTTTT
1 TTTTTTTCTTTT
210865885 CATGACTGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 7 0.21
27 4 0.12
28 23 0.68
ACGTcount: A:0.02, C:0.06, G:0.03, T:0.89
Consensus pattern (28 bp):
TTTTTTTCTTTTTGTTTTTTCTTGTCTT
Found at i:210871386 original size:29 final size:29
Alignment explanation
Indices: 210871352--210871426 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
210871342 TAATCAACCA
* *
210871352 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACG
*
210871381 CGCACACTTAGTGCCATGCATTTCAAGCG
1 CGCACACTTAGTGCCATGCATTTCAAACG
210871410 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
210871427 TCTCTCAACC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 3 0.07
29 39 0.93
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACG
Found at i:210871445 original size:28 final size:29
Alignment explanation
Indices: 210871345--210871452 Score: 78
Period size: 29 Copynumber: 3.8 Consensus size: 29
210871335 TGCTTAATAA
* * * *
210871345 TCAACCACGCACACTTAGTGCCATGTACTT
1 TCAACCGCGAACACTTAGTGCCATGCA-TC
* *
210871375 TAAACTCGC--ACACTTAGTGCCATGCATT
1 TCAAC-CGCGAACACTTAGTGCCATGCATC
* * *
210871403 TCAAGCGCGCACACTTAGTGCCATTC-TC
1 TCAACCGCGAACACTTAGTGCCATGCATC
* *
210871431 TCAACCGTGAACACTTATTGCC
1 TCAACCGCGAACACTTAGTGCC
210871453 CGCACACTTA
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 31 0.48
30 4 0.06
31 2 0.03
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
TCAACCGCGAACACTTAGTGCCATGCATC
Found at i:210879256 original size:29 final size:29
Alignment explanation
Indices: 210879217--210879296 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
210879207 CTTAATAATC
*
210879217 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
210879247 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
210879276 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
210879297 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:210881475 original size:40 final size:39
Alignment explanation
Indices: 210881430--210881594 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 39
210881420 CGGAATATAA
210881430 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
210881470 CCGGATAGAATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
210881508 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * *
210881548 CCGGATATAATTTC-CAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA--TCACTGCACAAATGCCTTCGGGTCTTAGC
210881587 CCGGATAT
1 CCGGATAT
210881595 CATTCAATTT
Statistics
Matches: 103, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
38 32 0.31
39 13 0.13
40 56 0.54
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:210889461 original size:40 final size:40
Alignment explanation
Indices: 210889416--210889582 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
210889406 CGGAATATAA
210889416 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
210889456 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
210889496 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
210889536 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
210889575 CCGGATAT
1 CCGGATAT
210889583 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.88
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:210895668 original size:25 final size:26
Alignment explanation
Indices: 210895631--210895682 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
210895621 TCAAACATGC
210895631 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
210895657 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
210895682 A
1 A
210895683 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:210897201 original size:26 final size:26
Alignment explanation
Indices: 210897163--210897246 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
210897153 CATGAAATTC
* *
210897163 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
210897189 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
210897215 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
210897241 TTATCA
1 TTATCA
210897247 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:210902956 original size:26 final size:26
Alignment explanation
Indices: 210902920--210903029 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
210902910 CATGAAATTC
210902920 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
210902946 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
210902972 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
210902998 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
210903024 TTATCA
1 TTATCA
210903030 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:210903951 original size:3 final size:3
Alignment explanation
Indices: 210903943--210903981 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
210903933 TAAAAGTATG
210903943 TAA TAA TAA TAA TAA TATA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TA
210903982 TCTACAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:210903964 original size:16 final size:16
Alignment explanation
Indices: 210903875--210903981 Score: 70
Period size: 16 Copynumber: 6.9 Consensus size: 16
210903865 ATATATTTGG
210903875 TAATAATAATATAA-AA
1 TAATAAT-ATATAATAA
*
210903891 TAATAATATGTACATAA
1 TAATAATATATA-ATAA
* *
210903908 AAATACATATAT-AT-G
1 TAATA-ATATATAATAA
210903923 T-AT-ATATAT-ATAA
1 TAATAATATATAATAA
*
210903936 -AAGT-ATGTAATAATAA
1 TAA-TAATAT-ATAATAA
210903952 TAATAATATATAATAA
1 TAATAATATATAATAA
210903968 TAATAATA-ATAATA
1 TAATAATATATAATA
210903982 TCTACAATAA
Statistics
Matches: 73, Mismatches: 8, Indels: 21
0.72 0.08 0.21
Matches are distributed among these distances:
12 8 0.11
13 1 0.01
14 6 0.08
15 12 0.16
16 30 0.41
17 11 0.15
18 5 0.07
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.36
Consensus pattern (16 bp):
TAATAATATATAATAA
Found at i:210904080 original size:2 final size:2
Alignment explanation
Indices: 210904073--210904109 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
210904063 TATGTGCAAA
* *
210904073 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
210904110 AAATATACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:210904270 original size:2 final size:2
Alignment explanation
Indices: 210904265--210904321 Score: 57
Period size: 2 Copynumber: 30.0 Consensus size: 2
210904255 AACTAATGGC
* * *
210904265 AT AT AT AC AT A- AT AT AT AT AT AT A- AT AC AC AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
210904304 AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT
210904322 TAGAAATGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
1 3 0.07
2 43 0.93
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:210905165 original size:14 final size:15
Alignment explanation
Indices: 210905130--210905165 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
210905120 TTTTTGGTTT
210905130 TTTTTTTGCTGGAAA
1 TTTTTTTGCTGGAAA
210905145 TTTTTTT-CTGGAAA
1 TTTTTTTGCTGGAAA
210905159 TTTTTTT
1 TTTTTTT
210905166 TTGGTGCTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.17, C:0.06, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTTTTTGCTGGAAA
Found at i:210905166 original size:15 final size:16
Alignment explanation
Indices: 210905129--210905166 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
210905119 TTTTTTGGTT
210905129 TTTTTTTTGCTGGAAA
1 TTTTTTTTGCTGGAAA
210905145 -TTTTTTT-CTGGAAA
1 TTTTTTTTGCTGGAAA
210905159 TTTTTTTT
1 TTTTTTTT
210905167 TGGTGCTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.16, C:0.05, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTTTTTTGCTGGAAA
Found at i:210905180 original size:33 final size:33
Alignment explanation
Indices: 210905127--210905201 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
210905117 TTTTTTTTGG
*
210905127 TTTTTTTTT-TGCTGGAAATTTTTTTCTGGAAA
1 TTTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
**
210905159 TTTTTTTTTGGTGCTGG-AATTTTTTGCTGGATT
1 TTTTTTTTT-GTGCTGGAAATTTTTTGCTGGAAA
210905192 TTTTTTTTTG
1 TTTTTTTTTG
210905202 CTTCCCCTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
32 10 0.26
33 22 0.58
34 6 0.16
ACGTcount: A:0.12, C:0.05, G:0.19, T:0.64
Consensus pattern (33 bp):
TTTTTTTTTGTGCTGGAAATTTTTTGCTGGAAA
Found at i:210905195 original size:14 final size:15
Alignment explanation
Indices: 210905129--210905197 Score: 56
Period size: 15 Copynumber: 4.5 Consensus size: 15
210905119 TTTTTTGGTT
210905129 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
210905144 ATTTTTTT-CTGGAAA
1 TTTTTTTTGCTGG-AA
210905159 TTTTTTTTTGGTGCTGGAA
1 --TTTTTTT--TGCTGGAA
210905178 --TTTTTTGCTGG-A
1 TTTTTTTTGCTGGAA
210905190 TTTTTTTT
1 TTTTTTTT
210905198 TTTGCTTCCC
Statistics
Matches: 44, Mismatches: 2, Indels: 17
0.70 0.03 0.27
Matches are distributed among these distances:
12 1 0.02
13 6 0.14
14 10 0.23
15 14 0.32
17 6 0.14
19 3 0.07
20 4 0.09
ACGTcount: A:0.13, C:0.06, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:210905645 original size:35 final size:35
Alignment explanation
Indices: 210905606--210905674 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
210905596 GGGTGTGTGA
210905606 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
*
210905641 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGA
210905675 AGAGGCAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.13, G:0.51, T:0.16
Consensus pattern (35 bp):
TGGTGCTGGCGGCAGACAGCATGGGAGAGTGGGAG
Found at i:210906460 original size:48 final size:50
Alignment explanation
Indices: 210906384--210906530 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 50
210906374 ATATGACCTA
**
210906384 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAA-AA-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
* *
210906432 AGG-TACAACTCACCTCTCGCAATATGAGTTGCTTTTTGAAAGACAGAAATTAAC
1 AGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-A-A-CAA-TAAC
*
210906486 AGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTTTGAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA
210906531 GGAATTGGAA
Statistics
Matches: 84, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
47 1 0.01
48 36 0.43
49 1 0.01
50 1 0.01
51 3 0.04
52 1 0.01
53 3 0.04
54 37 0.44
55 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (50 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAATAAC
Found at i:210906766 original size:147 final size:140
Alignment explanation
Indices: 210906587--210907175 Score: 980
Period size: 147 Copynumber: 4.1 Consensus size: 140
210906577 TCAACTCACC
210906587 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
210906652 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGC
210906717 TCAACTCACCTCTCGCAA
123 TCAACTCACCTCTCGCAA
*
210906735 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
210906800 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
*
210906865 CCTCTCGCCA
131 CCTCTCGCAA
*
210906875 TATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACT
1 TATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
210906940 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
59 CACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
210907005 TAACTCACCTCTCGCAA
124 CAACTCACCTCTCGCAA
210907022 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
210907087 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
66 CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
210907152 CCTCTCGCAA
131 CCTCTCGCAA
*
210907162 TGTGAGTTGATTTT
1 TATGAGTTGATTTT
210907176 CTGTCACTTG
Statistics
Matches: 423, Mismatches: 11, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
140 196 0.46
142 2 0.00
143 2 0.00
144 1 0.00
145 1 0.00
147 211 0.50
148 10 0.02
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (140 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAA
Found at i:210906799 original size:70 final size:70
Alignment explanation
Indices: 210906686--210907175 Score: 863
Period size: 70 Copynumber: 6.9 Consensus size: 70
210906676 CATAAATTGA
*
210906686 AAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
210906751 AACAT
66 AACAT
*
210906756 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
210906821 AACAT
66 AACAT
*
210906826 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCCATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
210906891 AACATAAATT
66 AAC----A-T
*
210906901 GAAAATTGAAATTACCTCAACGTGTTTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
210906966 GAAACAT
64 GAAACAT
*
210906973 AAATTGAAATTACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
210907038 AACAT
66 AACAT
210907043 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
210907108 AACAT
66 AACAT
*
210907113 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATGTGAGTTGATTTT
1 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
210907176 CTGTCACTTG
Statistics
Matches: 403, Mismatches: 10, Indels: 14
0.94 0.02 0.03
Matches are distributed among these distances:
70 333 0.83
72 1 0.00
73 1 0.00
74 1 0.00
75 1 0.00
77 66 0.16
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (70 bp):
AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AACAT
Found at i:210906871 original size:217 final size:217
Alignment explanation
Indices: 210906587--210907175 Score: 1093
Period size: 217 Copynumber: 2.7 Consensus size: 217
210906577 TCAACTCACC
210906587 TATGAGTTGATTTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TATGAGTTGA-TTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTC
210906652 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
65 TCGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGC
210906717 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTT
210906782 GAGGCTTAACTCACCTCTCGCAA
195 GAGGCTTAACTCACCTCTCGCAA
210906805 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
210906870 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
210906935 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
131 CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
210907000 AGGCTTAACTCACCTCTCGCAA
196 AGGCTTAACTCACCTCTCGCAA
210907022 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
1 TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
210907087 CGCAATATGAGTTGATTTTGAAAC----A-T--AAATTGAAATTACCTCAACGTGTCTTGAGGCT
66 CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
*
210907145 CAACTCACCTCTCGCAATGTGAGTTGATTTT
131 CAACTCACCTCTCGCAATATGAGTTGATTTT
210907176 CTGTCACTTG
Statistics
Matches: 368, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 61 0.17
212 1 0.00
213 1 0.00
217 295 0.80
218 10 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (217 bp):
TATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCCATATGAGTTGATTTTGAAACATAAATTGAAAATTGAAATTACCTCAACGTGTTTTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTGAAATTACCTCAACGTGTCTTG
AGGCTTAACTCACCTCTCGCAA
Found at i:210916101 original size:46 final size:46
Alignment explanation
Indices: 210916034--210916261 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
210916024 AGTGTGCTCT
210916034 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
210916080 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
210916126 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
210916172 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
210916218 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
210916262 TCATGTCAAA
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 165 0.99
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:210921239 original size:20 final size:21
Alignment explanation
Indices: 210921210--210921261 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
210921200 AACTAATGGC
*
210921210 ATATATACATAATATATATAT
1 ATATACACATAATATATATAT
210921231 A-ATACACATAATATATATAT
1 ATATACACATAATATATATAT
*
210921251 ATATATACATA
1 ATATACACATA
210921262 TTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATACACATAATATATATAT
Found at i:210921794 original size:11 final size:12
Alignment explanation
Indices: 210921778--210921813 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
210921768 AGAAAAAAAA
210921778 GAAGAGAG-AGG
1 GAAGAGAGAAGG
210921789 GAAGAGAGAAGG
1 GAAGAGAGAAGG
210921801 G-AGAGAGAAGG
1 GAAGAGAGAAGG
210921812 GA
1 GA
210921814 GGGGAAGGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:210921814 original size:11 final size:11
Alignment explanation
Indices: 210921780--210921823 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
210921770 AAAAAAAAGA
210921780 AGAGAG-AGGG
1 AGAGAGAAGGG
210921790 AAGAGAGAAGGG
1 -AGAGAGAAGGG
210921802 AGAGAGAAGGG
1 AGAGAGAAGGG
*
210921813 AG-GGGAAGGG
1 AGAGAGAAGGG
210921823 A
1 A
210921824 AATCCGGTCG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
10 8 0.26
11 19 0.61
12 4 0.13
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (11 bp):
AGAGAGAAGGG
Found at i:210931102 original size:40 final size:40
Alignment explanation
Indices: 210931000--210931183 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
210930990 AAATTGAATG
* * * * * *
210931000 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
210931040 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
210931080 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
210931120 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
210931160 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
210931184 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:210931208 original size:80 final size:80
Alignment explanation
Indices: 210931040--210931228 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
210931030 GCTGGAAATT
* * *
210931040 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
210931105 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
210931120 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
210931183 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
210931200 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
210931229 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:210934917 original size:68 final size:66
Alignment explanation
Indices: 210934845--210935146 Score: 180
Period size: 68 Copynumber: 4.6 Consensus size: 66
210934835 TCATGTGTAC
210934845 AAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTA
1 AAGAGAGCTAC-AGACATTAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTA
210934910 GAA
64 GAA
** * * * *** *
210934913 AAGAGAGCTAC-GGGA-TATATGTAGCTAGGTCGCATGCGTGGTTCCCCG-GTTGA-ACC-T-TC
1 AAGAGAGCTACAGACATTATATGTAGCTAGGTCGCATGGGTGATACTATGTG-T-ACACCATGTA
*
210934972 GGA
64 GAA
* ** * ** * * *
210934975 AAGATTGGATGATACAG--ATGGTATGTAGCTAGGTCACATGTAT-AGTGCTGA-GTGCACATCA
1 AAGA---GA-GCTACAGACATTATATGTAGCTAGGTCGCATGGGTGA-TACT-ATGTGTACACCA
*
210935036 TGT-GTAC
60 TGTAG-AA
*
210935043 AAGAGAGCTACAAGACATTATGATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTA
1 AAGAGAGCTAC-AGACATTAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTA
*
210935108 GAC
64 GAA
**
210935111 AAGAGAGCTAC-GGGA-TATATGTAGCTAGGTCGCATG
1 AAGAGAGCTACAGACATTATATGTAGCTAGGTCGCATG
210935147 CGTGGTTCCA
Statistics
Matches: 175, Mismatches: 37, Indels: 48
0.67 0.14 0.18
Matches are distributed among these distances:
62 7 0.04
63 2 0.01
64 49 0.28
65 15 0.09
66 32 0.18
67 8 0.05
68 60 0.34
69 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.26
Consensus pattern (66 bp):
AAGAGAGCTACAGACATTATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGA
A
Found at i:210935097 original size:198 final size:198
Alignment explanation
Indices: 210934759--210935155 Score: 776
Period size: 198 Copynumber: 2.0 Consensus size: 198
210934749 AGAGAGAAAT
210934759 CCCGGTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
1 CCCGGTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
210934824 CTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
66 CTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
210934889 ATACTATGTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
131 ATACTATGTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
210934954 TTC
196 TTC
210934957 CCCGGTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
1 CCCGGTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
*
210935022 CTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTTGCATGGGTG
66 CTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
*
210935087 ATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
131 ATACTATGTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
210935152 TTC
196 TTC
210935155 C
1 C
210935156 AAGTGAAGGA
Statistics
Matches: 197, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
198 197 1.00
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (198 bp):
CCCGGTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
CTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
ATACTATGTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
TTC
Found at i:210935238 original size:198 final size:195
Alignment explanation
Indices: 210934766--210935248 Score: 580
Period size: 198 Copynumber: 2.4 Consensus size: 195
210934756 AATCCCGGTT
* ** * * *
210934766 GAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGAGTG
1 GAACCTTCAGAAAGA-T-GATGATACAGATGAAATG-AGCTAGGTCACATGGATAGTACTAAGTG
*
210934831 CACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
63 CACACCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
**
210934896 GTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCCCG
128 GTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAG
**
210934961 GTT
193 GAG
* ** * * *
210934964 GAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGAGTG
1 GAACCTTCAGAAAGA-T-GATGATACAGATGAAATG-AGCTAGGTCACATGGATAGTACTAAGTG
* *
210935029 CACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTTGCATGGGTGATACTAT
63 CACACCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
*
210935094 GTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAG
128 GTGTACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAG
210935159 TGAAG
193 -G-AG
* * *
210935164 GACACCATGT-AGACAAGA-GA-GCTACGAGAT-AAACTG-GCTAGGTCACATGGGTGGTACTAA
1 GA-ACC-T-TCAGA-AAGATGATGATAC-AGATGAAA-TGAGCTAGGTCACATGGATAGTACTAA
**
210935224 GTGTTCACCATGTGTACAAGAGAGC
60 GTGCACACCATGTGTACAAGAGAGC
210935249 CGAACTATAT
Statistics
Matches: 259, Mismatches: 18, Indels: 16
0.88 0.06 0.05
Matches are distributed among these distances:
198 232 0.90
199 6 0.02
200 10 0.04
201 3 0.01
202 3 0.01
203 5 0.02
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (195 bp):
GAACCTTCAGAAAGATGATGATACAGATGAAATGAGCTAGGTCACATGGATAGTACTAAGTGCAC
ACCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG
TACACCATGTAGAAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGGAG
Found at i:210938181 original size:37 final size:36
Alignment explanation
Indices: 210938128--210938217 Score: 135
Period size: 37 Copynumber: 2.4 Consensus size: 36
210938118 TATAAAAGAA
*
210938128 GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTA-TCATCGG
*
210938165 GTCTTACCCGGTCATAATCTCCACACGTATCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTATCATCGG
*
210938201 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
210938218 TTCCAAGTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
36 17 0.35
37 31 0.65
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGGACATAATCTCCACACGTATCATCGG
Found at i:210938210 original size:36 final size:37
Alignment explanation
Indices: 210938140--210938211 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 37
210938130 CTTACCCAGA
*
210938140 CATAATCTCCACACGTAGTCATCGGGTCTTACCCGGT
1 CATAATCTCCACACGTAGTCATCGGGTCTCACCCGGT
210938177 CATAATCTCCACACGTA-TCATCGGGTCTCACCCGG
1 CATAATCTCCACACGTAGTCATCGGGTCTCACCCGG
210938212 AACATATTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 17 0.50
37 17 0.50
ACGTcount: A:0.22, C:0.35, G:0.18, T:0.25
Consensus pattern (37 bp):
CATAATCTCCACACGTAGTCATCGGGTCTCACCCGGT
Found at i:210938368 original size:49 final size:49
Alignment explanation
Indices: 210938313--210938478 Score: 278
Period size: 49 Copynumber: 3.4 Consensus size: 49
210938303 TTTTACATTA
* *
210938313 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
210938362 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
* *
210938411 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
* *
210938460 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
210938479 CATATATGTA
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 111 1.00
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
Found at i:210941817 original size:29 final size:29
Alignment explanation
Indices: 210941781--210941840 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
210941771 TGTTGAAAAA
210941781 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
210941810 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
210941839 CT
1 CT
210941841 TGTAACACCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACTGAT
Found at i:210943278 original size:40 final size:39
Alignment explanation
Indices: 210943234--210943426 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
210943224 GTTCAAAACA
* * ** * *
210943234 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
210943274 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
210943314 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
210943353 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
210943392 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
210943427 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:210943345 original size:39 final size:39
Alignment explanation
Indices: 210943264--210943426 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
210943254 TATGGTAACC
* *
210943264 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
210943304 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
210943343 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
210943382 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
210943421 CGCACA
1 CGCACA
210943427 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:210951218 original size:40 final size:39
Alignment explanation
Indices: 210951160--210951352 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
210951150 CGTTCAAACA
* * ** * *
210951160 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
210951200 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
210951240 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
210951279 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
210951318 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
210951353 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:210951271 original size:39 final size:39
Alignment explanation
Indices: 210951190--210951352 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
210951180 TATGGTAACC
* *
210951190 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
210951230 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
210951269 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
210951308 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
210951347 CGCACA
1 CGCACA
210951353 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:210954950 original size:40 final size:40
Alignment explanation
Indices: 210954905--210955072 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
210954895 CGGAATACAA
210954905 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
210954945 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
210954985 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
210955025 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
210955065 CCGGATAT
1 CCGGATAT
210955073 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:210955045 original size:80 final size:80
Alignment explanation
Indices: 210954905--210955072 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
210954895 CGGAATACAA
* *
210954905 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
210954970 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
210954985 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
210955048 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
210955065 CCGGATAT
1 CCGGATAT
210955073 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:210959563 original size:80 final size:80
Alignment explanation
Indices: 210959479--210959627 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
210959469 TATGGTAACC
* * * *
210959479 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
210959543 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
210959559 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
210959624 CCGG
66 CCGG
210959628 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:210959569 original size:40 final size:38
Alignment explanation
Indices: 210959520--210959627 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
210959510 ATCACGATTT
*
210959520 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
210959560 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
210959600 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
210959628 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:210966215 original size:40 final size:40
Alignment explanation
Indices: 210966170--210966337 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
210966160 CGGAATACAA
*
210966170 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
210966210 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
210966250 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
210966290 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
210966330 CCGGATAT
1 CCGGATAT
210966338 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:210966310 original size:80 final size:80
Alignment explanation
Indices: 210966170--210966337 Score: 232
Period size: 80 Copynumber: 2.1 Consensus size: 80
210966160 CGGAATACAA
* * *
210966170 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
210966235 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
210966250 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
210966313 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
210966330 CCGGATAT
1 CCGGATAT
210966338 CATTCAATTG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 75 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:210968051 original size:39 final size:39
Alignment explanation
Indices: 210967997--210968173 Score: 239
Period size: 39 Copynumber: 4.5 Consensus size: 39
210967987 GGCTGTCACA
*
210967997 ATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
* *
210968036 ATATCCGGGCGAAGTCCCGAAGGCATTCGTGCTGCTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
*
210968075 ATATCCGGTCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
* * * * *
210968114 ATATCTGGGCTAAAGTCCCGTAGGC-TTTGTGCTAGTATT
1 ATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGTT
210968153 ATATCCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
210968174 CATGCTTTGT
Statistics
Matches: 123, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
39 101 0.82
40 22 0.18
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
Found at i:210971471 original size:42 final size:43
Alignment explanation
Indices: 210971415--210971519 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
210971405 ATGATTTATG
*
210971415 TGTAAGACCATGTCTGGGACA-TCAGT-ATC-ATATTTGATTTCA
1 TGTAAGACCATGTCTGGGACAGT--GTCATCGATATTTGATTACA
*
210971457 TGTAAGACCCTGTCTGGGACAGTGTCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGTCATCGATATTTGATTACA
**
210971500 TGTAAGACCACATCTGGGAC
1 TGTAAGACCATGTCTGGGAC
210971520 GTTGGCATTG
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
41 2 0.04
42 23 0.42
43 30 0.55
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGTCATCGATATTTGATTACA
Found at i:210976535 original size:17 final size:17
Alignment explanation
Indices: 210976513--210976546 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
210976503 ATGTAAAATA
*
210976513 AGCTTCACAACCTTTTC
1 AGCTTCACAACCCTTTC
210976530 AGCTTCACAACCCTTTC
1 AGCTTCACAACCCTTTC
210976547 TCACCATACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.38, G:0.06, T:0.32
Consensus pattern (17 bp):
AGCTTCACAACCCTTTC
Found at i:210983559 original size:24 final size:24
Alignment explanation
Indices: 210983529--210983745 Score: 375
Period size: 24 Copynumber: 9.1 Consensus size: 24
210983519 GAATGTGACT
* *
210983529 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
210983553 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
210983577 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
210983601 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
210983625 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
210983649 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
210983673 ATAGT-AATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
210983696 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
210983720 ATAGT-AATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
210983743 ATA
1 ATA
210983746 ATGCCACAAT
Statistics
Matches: 188, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
23 44 0.23
24 144 0.77
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:210991566 original size:24 final size:24
Alignment explanation
Indices: 210991536--210991774 Score: 415
Period size: 24 Copynumber: 10.0 Consensus size: 24
210991526 GACTGTGACT
* *
210991536 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
* *
210991560 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
210991584 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
210991608 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
210991632 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
210991656 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
210991680 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
210991704 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
210991728 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
210991752 ATAGTAAATTGCACACATAGTGC
1 ATAGTAAATCGCACACATAGTGC
210991775 ATTTGAGATA
Statistics
Matches: 208, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 208 1.00
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:210994595 original size:11 final size:11
Alignment explanation
Indices: 210994538--210994598 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
210994528 ATTAGATAAA
210994538 TATTATTTTAT
1 TATTATTTTAT
*
210994549 TAATATTTTAT
1 TATTATTTTAT
* * *
210994560 GA-GATATTTAA
1 TATTAT-TTTAT
210994571 TATTATTTTAT
1 TATTATTTTAT
210994582 TATTA-TTTATT
1 TATTATTTTA-T
210994593 TATTAT
1 TATTAT
210994599 ATAAGGAAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
10 6 0.15
11 31 0.79
12 2 0.05
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:210996845 original size:46 final size:46
Alignment explanation
Indices: 210996774--210996989 Score: 306
Period size: 46 Copynumber: 4.7 Consensus size: 46
210996764 GGCAACCTGA
*
210996774 GTGTAAGACCATGGTTGAAAAATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
210996820 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
210996866 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
210996912 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
210996958 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
210996990 TCATGTCAAA
Statistics
Matches: 155, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 155 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:210996975 original size:138 final size:130
Alignment explanation
Indices: 210996724--210996989 Score: 370
Period size: 138 Copynumber: 2.0 Consensus size: 130
210996714 AGTGTGCTCT
*
210996724 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
210996789 TGAAAAATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAAATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
210996854 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
* *
210996919 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAAATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
210996984 ATGGCA
123 ATGGCA
210996990 TCATGTCAAA
Statistics
Matches: 118, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
130 48 0.41
132 1 0.01
133 1 0.01
136 2 0.02
138 66 0.56
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAAATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:211000511 original size:32 final size:32
Alignment explanation
Indices: 211000470--211000535 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
211000460 ATTATGACCA
211000470 ACACAAGCCAATACAATAGCAACATCCATCAT
1 ACACAAGCCAATACAATAGCAACATCCATCAT
211000502 ACACAAGCCAATACAATAGCAACATCCATCAT
1 ACACAAGCCAATACAATAGCAACATCCATCAT
211000534 AC
1 AC
211000536 TCACAACATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.47, C:0.32, G:0.06, T:0.15
Consensus pattern (32 bp):
ACACAAGCCAATACAATAGCAACATCCATCAT
Found at i:211014056 original size:40 final size:39
Alignment explanation
Indices: 211014011--211014140 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
211014001 CGGAATATAA
211014011 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
211014051 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
211014091 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
211014131 CCGGATATAA
1 CCGGATATAA
211014141 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:211014155 original size:40 final size:40
Alignment explanation
Indices: 211014027--211014177 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
211014017 ATAACCATGT
* * *
211014027 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
211014067 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
211014107 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
211014147 GCATAATTGTCTT-GGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
211014178 CATTCAATTT
Statistics
Matches: 90, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
39 17 0.19
40 71 0.79
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:211018948 original size:19 final size:18
Alignment explanation
Indices: 211018923--211018970 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
211018913 AAAGAAATGA
*
211018923 AAAAAAAAAAGAGAATATG
1 AAAAAAAAAAGAGAA-AAG
*
211018942 AAGAAAAACAA-AGAAAAG
1 AA-AAAAAAAAGAGAAAAG
211018960 AAAAAAAAAAG
1 AAAAAAAAAAG
211018971 TGTTCATTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
17 7 0.29
18 4 0.17
19 6 0.25
20 7 0.29
ACGTcount: A:0.79, C:0.02, G:0.15, T:0.04
Consensus pattern (18 bp):
AAAAAAAAAAGAGAAAAG
Found at i:211020159 original size:29 final size:29
Alignment explanation
Indices: 211020126--211020218 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
211020116 TGACGAGATT
* *
211020126 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
*
211020155 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
211020184 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
211020213 GGCACT
1 GGCACT
211020219 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:211020231 original size:29 final size:29
Alignment explanation
Indices: 211020126--211020231 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
211020116 TGACGAGATT
* *
211020126 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
*
211020155 GGCACTAAGTGTGC-ATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAA
* * * *
211020184 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
211020213 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
211020232 CAGAGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:211025994 original size:2 final size:2
Alignment explanation
Indices: 211025987--211026023 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
211025977 TGAAAGTCGA
*
211025987 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
211026024 TTTTAAAGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:211027960 original size:29 final size:29
Alignment explanation
Indices: 211027927--211028057 Score: 115
Period size: 29 Copynumber: 4.5 Consensus size: 29
211027917 GTGACGAGAT
211027927 TGGCACTAAGTGTGCATGCTTGAAATATA
1 TGGCACTAAGTGTGCATGCTTGAAATATA
*
211027956 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTTGAAATATA
* ** * ***
211027985 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTTGAAATATA
* **
211028014 TGGCACTATGTGTGCGGGCTT-AAAT-TGCA
1 TGGCACTAAGTGTGCATGCTTGAAATAT--A
211028043 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
211028058 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 16, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
27 1 0.01
28 2 0.02
29 78 0.95
30 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTTGAAATATA
Found at i:211030430 original size:43 final size:43
Alignment explanation
Indices: 211030377--211030501 Score: 187
Period size: 43 Copynumber: 2.9 Consensus size: 43
211030367 GCTGGTATTA
*
211030377 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAATGCCGGTGATGTG
* **
211030420 TATTTGGGCCTTCGTGCCTAGCAGGCTTCCTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAATGCCGGTGATGTG
* * *
211030463 TATTCAGGCCTTTGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAATGCCGGTGA
211030502 AATGATATGT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAATGCCGGTGATGTG
Found at i:211031176 original size:23 final size:23
Alignment explanation
Indices: 211031146--211031196 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
211031136 GGTGTGAAAG
211031146 TATGTGAAAGTATTTGATTTAAT
1 TATGTGAAAGTATTTGATTTAAT
211031169 TATGTGAAAGTATTTGATTTAAT
1 TATGTGAAAGTATTTGATTTAAT
211031192 TATGT
1 TATGT
211031197 TATACGAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (23 bp):
TATGTGAAAGTATTTGATTTAAT
Found at i:211038997 original size:93 final size:93
Alignment explanation
Indices: 211038885--211039056 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
211038875 CGCCCATAAG
* *
211038885 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
211038950 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
211038978 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
211039043 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
211039057 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:211039053 original size:46 final size:46
Alignment explanation
Indices: 211038878--211039053 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
211038868 TGTAACCCGC
* * *
211038878 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
211038924 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
211038974 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
211039017 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
211039054 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:211048726 original size:39 final size:39
Alignment explanation
Indices: 211048601--211048790 Score: 166
Period size: 40 Copynumber: 4.8 Consensus size: 39
211048591 GCTACTCGTT
* * * * * **
211048601 CAATCGCCTTCGGGACATAGCCCGGTTATGATAACCCGCA
1 CAAT-GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCA
* * * * * * *
211048641 CCAAGGCCTACGGGACTTAACCCGGATATCACGATTTGCA
1 -CAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCA
211048681 CAAATGCCTTCGGGTCTTAGCCCGGAT-TAACAACTTGCA
1 C-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCA
* * *
211048720 CGAATGCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCA
1 C-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCA
*
211048760 CAATTGCCTTCGGGTCTTAACCCGGATATAA
1 CAA-TGCCTTCGGGTCTTAGCCCGGATATAA
211048791 TTTTCAGCAT
Statistics
Matches: 122, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
39 38 0.31
40 81 0.66
41 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
CAATGCCTTCGGGTCTTAGCCCGGATATAACAACTTGCA
Found at i:211048805 original size:40 final size:40
Alignment explanation
Indices: 211048678--211048828 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
211048668 ATCACGATTT
* * * *
211048678 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-TAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
211048717 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
211048757 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
211048797 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
211048829 CATTCAATTT
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
39 31 0.32
40 66 0.68
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:211052372 original size:61 final size:63
Alignment explanation
Indices: 211052239--211052372 Score: 143
Period size: 60 Copynumber: 2.2 Consensus size: 63
211052229 ACTGGGCCTA
* *
211052239 AGCCCTATT-CAGAAATCAGAGTTAATTGAGCCTTAGCCCATATCAATATTAATCTAGGCCAT
1 AGCCCTATTACAGAAATCAGAGTTAACTGAGCCTTAGCCCATATCAATATCAATCTAGGCCAT
* * * * * * *
211052301 AGCCC-CTTACAG-TATCAGAG-TATACTGAGCC-TAGCCCATATCAGTGTCAATCTGGGTCGT
1 AGCCCTATTACAGAAATCAGAGTTA-ACTGAGCCTTAGCCCATATCAATATCAATCTAGGCCAT
211052361 AGCCCTATTACA
1 AGCCCTATTACA
211052373 AGTCGAGATA
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
60 30 0.51
61 21 0.36
62 8 0.14
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (63 bp):
AGCCCTATTACAGAAATCAGAGTTAACTGAGCCTTAGCCCATATCAATATCAATCTAGGCCAT
Found at i:211052418 original size:20 final size:20
Alignment explanation
Indices: 211052393--211052438 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
211052383 TGTTGGCCTT
211052393 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
211052413 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
211052432 GCCCATA
1 GCCCATA
211052439 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:211052447 original size:19 final size:20
Alignment explanation
Indices: 211052405--211052448 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
211052395 CCATATTAAC
** *
211052405 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
211052425 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
211052444 ACAGT
1 ACAGT
211052449 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:211056656 original size:40 final size:41
Alignment explanation
Indices: 211056573--211056749 Score: 233
Period size: 40 Copynumber: 4.4 Consensus size: 41
211056563 GGACTAAGAT
* *
211056573 CCGAAGGCATTCGTGCAG-GTT-TTATAACCGGACTAAGAT-
1 CCGAAGGCATTCGTGCTGAGTTATTATAACCGGGCTAAG-TC
*
211056612 CCGAAGGCAATT-GTGCT-AGTTATTATAACCGGGTTAAGTC
1 CCGAAGGC-ATTCGTGCTGAGTTATTATAACCGGGCTAAGTC
* *
211056652 CCGAAGGCATTCGTG-TGGGTTATTATAACCGGGTTAAGTC
1 CCGAAGGCATTCGTGCTGAGTTATTATAACCGGGCTAAGTC
*
211056692 CCGAAGGCATTCGTG-TGGGTTATTATAACCGGGCTAAGTC
1 CCGAAGGCATTCGTGCTGAGTTATTATAACCGGGCTAAGTC
211056732 CCGAAGGCATTCGTGCTG
1 CCGAAGGCATTCGTGCTG
211056750 GTTGTTACAT
Statistics
Matches: 126, Mismatches: 5, Indels: 12
0.88 0.03 0.08
Matches are distributed among these distances:
39 20 0.16
40 104 0.83
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (41 bp):
CCGAAGGCATTCGTGCTGAGTTATTATAACCGGGCTAAGTC
Found at i:211060471 original size:24 final size:24
Alignment explanation
Indices: 211060299--211060469 Score: 288
Period size: 24 Copynumber: 7.1 Consensus size: 24
211060289 GCAAAGACCA
*
211060299 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
211060323 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
211060347 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
211060371 TATGGCACTATGTGTGCGATACAC
1 TATGGCACTATGTGTGCGATTTAC
211060395 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
211060419 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
211060443 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
211060467 TAT
1 TAT
211060470 AGTCACATTC
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 140 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:211068400 original size:24 final size:24
Alignment explanation
Indices: 211068228--211068398 Score: 288
Period size: 24 Copynumber: 7.1 Consensus size: 24
211068218 GCAAAGACCA
*
211068228 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
211068252 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
211068276 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
211068300 TATGGCACTATGTGTGCGATACAC
1 TATGGCACTATGTGTGCGATTTAC
211068324 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
211068348 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
211068372 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
211068396 TAT
1 TAT
211068399 AGTCACATTC
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 140 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:211077025 original size:42 final size:41
Alignment explanation
Indices: 211076945--211077094 Score: 162
Period size: 41 Copynumber: 3.6 Consensus size: 41
211076935 GAGCTTGGTC
211076945 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
211076986 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
211077028 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
*
211077069 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
211077095 GAGTCGGACT
Statistics
Matches: 90, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
39 4 0.04
40 9 0.10
41 37 0.41
42 28 0.31
43 12 0.13
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:211077077 original size:41 final size:40
Alignment explanation
Indices: 211076925--211077094 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
211076915 GCTAATCGGG
*
211076925 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
211076966 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
211077009 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
211077049 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
211077090 G-CTAA
1 GTCTAA
211077095 GAGTCGGACT
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 7 0.07
40 14 0.13
41 50 0.47
42 23 0.21
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:211086006 original size:80 final size:80
Alignment explanation
Indices: 211085922--211086070 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
211085912 TATGGTAACC
* * * *
211085922 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
211085986 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
211086002 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
211086067 CCGG
66 CCGG
211086071 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:211086012 original size:40 final size:38
Alignment explanation
Indices: 211085963--211086070 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
211085953 ATCACGATTT
*
211085963 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
211086003 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
211086043 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
211086071 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:211094120 original size:80 final size:80
Alignment explanation
Indices: 211094036--211094184 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
211094026 TATGGTAACC
* * * *
211094036 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
211094100 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
211094116 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
211094181 CCGG
66 CCGG
211094185 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:211094126 original size:40 final size:38
Alignment explanation
Indices: 211094077--211094184 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
211094067 ATCACGATTT
*
211094077 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
211094117 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
211094157 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
211094185 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:211101391 original size:12 final size:12
Alignment explanation
Indices: 211101374--211101404 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
211101364 AAGATGAGCA
*
211101374 TTCTTTTTTTTT
1 TTCTTTTCTTTT
211101386 TTCTTTTCTTTT
1 TTCTTTTCTTTT
211101398 TTCTTTT
1 TTCTTTT
211101405 ACTAACATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (12 bp):
TTCTTTTCTTTT
Found at i:211108075 original size:30 final size:29
Alignment explanation
Indices: 211108019--211108122 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 29
211108009 CCTCCGAGCT
** * * *
211108019 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
211108048 TGCACACTTAGTGCATATATATTTCCAGCA
1 CGCACACTTAGTGC-CATATATTTCCAGCA
211108078 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
211108107 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
211108123 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
29 41 0.63
30 24 0.37
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:211109863 original size:29 final size:28
Alignment explanation
Indices: 211109809--211109863 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
211109799 CCTGCCACGT
*
211109809 ATATCTGTTCTGGTGGCACTGCCACAAA
1 ATATCTGTTCTGGTGACACTGCCACAAA
* *
211109837 ATATCTGTATCTGGTGACTCTGTCACA
1 ATATCTGT-TCTGGTGACACTGCCACA
211109864 TTTTCTGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (28 bp):
ATATCTGTTCTGGTGACACTGCCACAAA
Found at i:211113008 original size:42 final size:41
Alignment explanation
Indices: 211112892--211113008 Score: 117
Period size: 43 Copynumber: 2.8 Consensus size: 41
211112882 CATACCAATT
* *
211112892 CCATATCCTAGATATGGTCTTACATGAGATCTCATATTGATG
1 CCATATCCTAGATATGGTCTTACACGA-ATCTCATATCGATG
* * * * * *
211112934 CCAAAAGCCTAGCTATGGTCTGACACAAAATCTGATATCGATG
1 CC-ATATCCTAGATATGGTCTTACAC-GAATCTCATATCGATG
*
211112977 CCATATCCCAGATATGGTCTTACACGTAATCT
1 CCATATCCTAGATATGGTCTTACACG-AATCT
211113009 TAACTAACCC
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
42 25 0.43
43 32 0.55
44 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (41 bp):
CCATATCCTAGATATGGTCTTACACGAATCTCATATCGATG
Found at i:211120203 original size:40 final size:41
Alignment explanation
Indices: 211120148--211120315 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 41
211120138 TGAATGATAC
* *
211120148 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCTGATTATAT
* * *
211120188 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCTGATTATAT
* ** *
211120228 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGCT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCTGATTATAT
* * * *
211120268 CCGGGTTAAGACCCGAAGGCAATTGTGCTTG-TGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCTGATTATAT
211120308 CC-GGCTAA
1 CCGGGCTAA
211120316 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGCTGATTATAT
Found at i:211120281 original size:80 final size:80
Alignment explanation
Indices: 211120148--211120315 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
211120138 TGAATGATAC
* * ** *
211120148 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-
*
211120212 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* *
211120228 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGCT-ACCAAATCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGACCAAATCCGGGCTAAGACCCGAAGGCAATT
**
211120292 GTGCTTGTGGTTATAT
65 GTGCGAGTGGTTATAT
211120308 CC-GGCTAA
1 CCGGGCTAA
211120316 ATTCCGAAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 6 0.08
80 66 0.87
81 4 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Done.