Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 678 of 770
Found at i:213558784 original size:40 final size:40
Alignment explanation
Indices: 213558739--213558905 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
213558729 CGGAATATAA
213558739 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
213558779 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
213558819 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
213558859 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
213558898 CCGGATAT
1 CCGGATAT
213558906 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:213570943 original size:40 final size:40
Alignment explanation
Indices: 213570888--213571029 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
213570878 TATTCGAATG
213570888 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
213570928 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
213570968 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
213571008 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
213571030 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 14 0.15
40 79 0.83
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:213575524 original size:27 final size:27
Alignment explanation
Indices: 213575477--213575529 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
213575467 AGGTAAGTTC
213575477 ATATTAGGATTACTATCTTTATTAATG
1 ATATTAGGATTACTATCTTTATTAATG
* * *
213575504 ATATTAGGGTTATTATTTTTATTAAT
1 ATATTAGGATTACTATCTTTATTAAT
213575530 TATTTTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (27 bp):
ATATTAGGATTACTATCTTTATTAATG
Found at i:213577873 original size:22 final size:22
Alignment explanation
Indices: 213577848--213577891 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
213577838 TTATCGATTC
*
213577848 AGCTCTAA-AGAGATTACTGTTT
1 AGCTC-AATAGAGATTACCGTTT
*
213577870 AGCTCAATAGAGTTTACCGTTT
1 AGCTCAATAGAGATTACCGTTT
213577892 TCGGCTCAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (22 bp):
AGCTCAATAGAGATTACCGTTT
Found at i:213577904 original size:24 final size:25
Alignment explanation
Indices: 213577870--213577938 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 25
213577860 ATTACTGTTT
*
213577870 AGCTCAATAGAGTTTACCGTTT-TC
1 AGCTCAATAGAGCTTACCGTTTATC
* * *
213577894 GGCTCAGTAGAGCTTACTGTTTATC
1 AGCTCAATAGAGCTTACCGTTTATC
*
213577919 AGCTCAAGAGGAGCTTACCG
1 AGCTCAATA-GAGCTTACCG
213577939 ATCATGACTC
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
24 18 0.51
25 8 0.23
26 9 0.26
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (25 bp):
AGCTCAATAGAGCTTACCGTTTATC
Found at i:213578121 original size:22 final size:24
Alignment explanation
Indices: 213578077--213578122 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
213578067 TAATACAGAG
*
213578077 TATATGTATAAGTGATATTAATTT
1 TATATGTATAAGTGATATGAATTT
*
213578101 TATATGTATGA-T-ATATGAATTT
1 TATATGTATAAGTGATATGAATTT
213578123 GGAATAATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 1 0.05
24 10 0.50
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (24 bp):
TATATGTATAAGTGATATGAATTT
Found at i:213579004 original size:42 final size:42
Alignment explanation
Indices: 213578939--213579018 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
213578929 TACAGGTTTG
** * *
213578939 ACACGGCTTATACACACGGGCGTGTCTATTGGCCGTGTGTGTC
1 ACACGGCTTATACACACAAGCGTGT-GATTGACCGTGTGTGTC
*
213578982 ACACGGGTT-TACACACAAGCGTGTGATTGACCGTGTG
1 ACACGGCTTATACACACAAGCGTGTGATTGACCGTGTG
213579019 ACATAAGTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
41 11 0.34
42 13 0.41
43 8 0.25
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (42 bp):
ACACGGCTTATACACACAAGCGTGTGATTGACCGTGTGTGTC
Found at i:213580938 original size:42 final size:42
Alignment explanation
Indices: 213580824--213580947 Score: 108
Period size: 42 Copynumber: 2.9 Consensus size: 42
213580814 CGGAGATATC
* * * ** *
213580824 GTGTAAGACTATGTCTA-GGACACAGGCCTCGATTTTAGATTTAC
1 GTGTAAGACCATGTC-AGGGACAGAGGCATCGATACT-GATTT-T
* **
213580868 GTGTAAGACCATGTCTGGGACATCGGCATC-ATATCTGATTTT
1 GTGTAAGACCATGTCAGGGACAGAGGCATCGATA-CTGATTTT
*
213580910 GTGTAAGACCCTGTCAGGGACAGAGGCATCGATACTGA
1 GTGTAAGACCATGTCAGGGACAGAGGCATCGATACTGA
213580948 ATTACATGTA
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
42 30 0.46
43 10 0.15
44 25 0.38
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATGTCAGGGACAGAGGCATCGATACTGATTTT
Found at i:213581812 original size:31 final size:31
Alignment explanation
Indices: 213581774--213581837 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
213581764 CCTTTTCATA
*
213581774 TTTCATATTTCATAACACTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
* ** *
213581805 TTTCATATTTTATATTACTGGGCCGAATCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
213581836 TT
1 TT
213581838 ACTGTAAACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.42
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:213583375 original size:28 final size:27
Alignment explanation
Indices: 213583312--213583381 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
213583302 ATAGTGAGTC
213583312 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
213583339 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
213583367 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
213583382 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:213585069 original size:24 final size:24
Alignment explanation
Indices: 213585037--213585099 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
213585027 GGCCTAGCCT
*
213585037 CTTTGAATAACTGGGGAAAAAACC
1 CTTTTAATAACTGGGGAAAAAACC
* * *
213585061 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGAAAAAACC
213585085 C-TTTAATAACTGGGG
1 CTTTTAATAACTGGGG
213585100 CATAAGCCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
23 14 0.40
24 21 0.60
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.27
Consensus pattern (24 bp):
CTTTTAATAACTGGGGAAAAAACC
Found at i:213585093 original size:23 final size:23
Alignment explanation
Indices: 213585018--213585111 Score: 109
Period size: 23 Copynumber: 4.0 Consensus size: 23
213585008 GCTTTATCAT
*
213585018 ATAACTGGAGGCCT-AGCCTCTTTGA
1 ATAACTGG-GGCATAAGCC-CTTT-A
* * *
213585043 ATAACTGGGGAAAAAACCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
213585067 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
213585090 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
213585112 TTCACTTCCT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
23 26 0.43
24 20 0.33
25 14 0.23
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:213585187 original size:20 final size:20
Alignment explanation
Indices: 213585162--213585228 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
213585152 TTATGATTAC
213585162 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
213585182 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
213585202 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
213585222 ACCATGT
1 ATCATGT
213585229 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:213585193 original size:11 final size:11
Alignment explanation
Indices: 213585162--213585217 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
213585152 TTATGATTAC
213585162 ATCATGTGCAT
1 ATCATGTGCAT
*
213585173 ATCA--TACAT
1 ATCATGTGCAT
213585182 ATCATGTGCAT
1 ATCATGTGCAT
*
213585193 ATCA--TACAT
1 ATCATGTGCAT
*
213585202 GTCATGTGCAT
1 ATCATGTGCAT
213585213 ATCAT
1 ATCAT
213585218 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:213590022 original size:46 final size:46
Alignment explanation
Indices: 213589969--213590097 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
213589959 ATATTGGGCA
*
213589969 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
213590015 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
213590061 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
213590098 GCGGGTTACA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:213593036 original size:15 final size:15
Alignment explanation
Indices: 213593016--213593084 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
213593006 GTATCTTGGG
213593016 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
213593031 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
213593046 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
213593061 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
213593076 TTTCTTTAT
1 TTTCTTTAT
213593085 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:213593085 original size:30 final size:30
Alignment explanation
Indices: 213593007--213593094 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
213592997 CATAGTATCG
* * * *
213593007 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
213593037 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
213593067 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
213593095 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:213597438 original size:40 final size:40
Alignment explanation
Indices: 213597372--213597522 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
213597362 AAATTGAATG
* * *
213597372 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
213597411 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
213597451 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
213597491 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
213597523 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:213597536 original size:40 final size:40
Alignment explanation
Indices: 213597409--213597538 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
213597399 ATGCTGGAAA
* * *
213597409 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
213597449 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
213597489 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
213597529 TTATATCCGG
1 TTATATCCGG
213597539 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:213605423 original size:40 final size:40
Alignment explanation
Indices: 213605357--213605507 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
213605347 AAATTGAATG
* * *
213605357 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
213605396 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
213605436 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
213605476 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
213605508 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:213605521 original size:40 final size:40
Alignment explanation
Indices: 213605394--213605523 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
213605384 ATGCTGGAAA
* * *
213605394 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
213605434 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
213605474 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
213605514 TTATATCCGG
1 TTATATCCGG
213605524 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:213607099 original size:31 final size:31
Alignment explanation
Indices: 213607058--213607121 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
213607048 CCTTTTCATA
*
213607058 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
213607089 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
213607120 TT
1 TT
213607122 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:213607366 original size:24 final size:24
Alignment explanation
Indices: 213607314--213607479 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
213607304 GCTTTATCAT
*
213607314 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
213607339 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
213607363 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
213607386 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
213607410 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
213607434 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
213607457 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
213607480 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:213607390 original size:47 final size:48
Alignment explanation
Indices: 213607313--213607479 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
213607303 TGCTTTATCA
* *
213607313 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
213607362 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
213607409 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
213607456 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
213607480 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:213607414 original size:71 final size:71
Alignment explanation
Indices: 213607314--213607479 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
213607304 GCTTTATCAT
* *
213607314 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
213607378 GCCCTTTA
64 GCCCTTTA
* * *
213607386 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
213607451 CCTTTA
66 CCTTTA
213607457 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
213607480 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:213607551 original size:9 final size:9
Alignment explanation
Indices: 213607537--213607612 Score: 62
Period size: 9 Copynumber: 7.9 Consensus size: 9
213607527 ATCTCGTGTG
213607537 CATATCATA
1 CATATCATA
*
213607546 CATATCATGTG
1 CATATCA--TA
213607557 CATATCATA
1 CATATCATA
* *
213607566 CATGTCATGTG
1 CATATCA--TA
213607577 CATATCATA
1 CATATCATA
*
213607586 CATATCATGT
1 CATATCAT-A
*
213607596 GATATCATA
1 CATATCATA
213607605 CATATCAT
1 CATATCAT
213607613 GTTTATCAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
9 30 0.58
10 7 0.13
11 15 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (9 bp):
CATATCATA
Found at i:213607556 original size:20 final size:20
Alignment explanation
Indices: 213607533--213607614 Score: 148
Period size: 20 Copynumber: 4.2 Consensus size: 20
213607523 GAACATCTCG
213607533 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
213607553 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
213607573 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
213607593 TGTG-ATATCATACATATCA
1 TGTGCATATCATACATATCA
213607612 TGT
1 TGT
213607615 TTATCAAAAT
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
19 18 0.30
20 42 0.70
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:213607608 original size:4 final size:5
Alignment explanation
Indices: 213607537--213607612 Score: 61
Period size: 5 Copynumber: 15.6 Consensus size: 5
213607527 ATCTCGTGTG
* * *
213607537 CATAT CATA- CATAT CATGT GCATAT CATA- CATGT CATGT GCATAT CATA-
1 CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CATAT -CATAT CATAT
* *
213607586 CATAT CATGT GATAT CATA- CATAT CAT
1 CATAT CATAT CATAT CATAT CATAT CAT
213607613 GTTTATCAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
4 15 0.26
5 34 0.60
6 8 0.14
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (5 bp):
CATAT
Found at i:213607679 original size:25 final size:25
Alignment explanation
Indices: 213607651--213607698 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
213607641 ATATATAAAC
* * *
213607651 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
213607676 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
213607699 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:213608955 original size:27 final size:27
Alignment explanation
Indices: 213608935--213609508 Score: 638
Period size: 27 Copynumber: 21.6 Consensus size: 27
213608925 AGGGTATTTT
*
213608935 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213608962 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
213608989 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
213609016 GGAAATACTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213609043 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
213609070 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
213609097 GGTAATTATGTAAAT-TAGGGGTAAAA-
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
213609123 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
213609150 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
213609177 GGTAATT-TGTAAATCGAGGGTAAAA-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
213609202 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
213609229 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213609256 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213609283 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
213609310 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
213609337 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
213609364 GGTAATTCTGTAAATCGAAGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213609391 GGTAATT-T-TAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
213609416 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
213609443 GGTAATTTTACAAATCGAGGGT---A-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
213609466 AGTAATTCTATAACT-GAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213609492 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
213609509 GGAGTACTTT
Statistics
Matches: 477, Mismatches: 50, Indels: 40
0.84 0.09 0.07
Matches are distributed among these distances:
22 6 0.01
23 11 0.02
24 1 0.00
25 31 0.06
26 71 0.15
27 354 0.74
28 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:213612388 original size:31 final size:31
Alignment explanation
Indices: 213612347--213612410 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
213612337 CCTTTTCATA
*
213612347 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
213612378 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
213612409 TT
1 TT
213612411 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:213612653 original size:23 final size:24
Alignment explanation
Indices: 213612602--213612742 Score: 200
Period size: 23 Copynumber: 6.0 Consensus size: 24
213612592 GCTTTATCAT
*
213612602 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
213612627 ATAACTGGGGCA-AAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
213612650 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
213612673 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
213612697 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
213612720 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
213612743 TCACTTCCTC
Statistics
Matches: 105, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
23 60 0.57
24 37 0.35
25 8 0.08
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:213612701 original size:47 final size:46
Alignment explanation
Indices: 213612623--213612742 Score: 204
Period size: 47 Copynumber: 2.6 Consensus size: 46
213612613 CCTAGCCTCT
* *
213612623 TTTAATAACTGGGGCAAAGCCCTTTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCTAAGCCCTTTTGATAACTGGGGCATAAGCCC
213612669 TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGC-TAAGCCCTTTTGATAACTGGGGCATAAGCCC
213612716 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGC-TAAGCCCTTTT
213612743 TCACTTCCTC
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 15 0.21
47 55 0.79
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.30
Consensus pattern (46 bp):
TTTAATAACTGGGGCTAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:213612814 original size:9 final size:9
Alignment explanation
Indices: 213612800--213612876 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
213612790 ATCTCGTGTG
213612800 CATATCATA
1 CATATCATA
*
213612809 CATATCATGTG
1 CATATCA--TA
213612820 CATATCATA
1 CATATCATA
* *
213612829 CATGTCATGTG
1 CATATCA--TA
213612840 CATATCATA
1 CATATCATA
*
213612849 CATATCATGTG
1 CATATCA--TA
213612860 CATATCATA
1 CATATCATA
213612869 CATATCAT
1 CATATCAT
213612877 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:213612819 original size:20 final size:20
Alignment explanation
Indices: 213612796--213612878 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
213612786 GAACATCTCG
213612796 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
213612816 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
213612836 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
213612856 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
213612876 TGT
1 TGT
213612879 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:213612825 original size:11 final size:11
Alignment explanation
Indices: 213612796--213612867 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
213612786 GAACATCTCG
213612796 TGTGCATATCA
1 TGTGCATATCA
*
213612807 --TACATATCA
1 TGTGCATATCA
213612816 TGTGCATATCA
1 TGTGCATATCA
* *
213612827 --TACATGTCA
1 TGTGCATATCA
213612836 TGTGCATATCA
1 TGTGCATATCA
*
213612847 --TACATATCA
1 TGTGCATATCA
213612856 TGTGCATATCA
1 TGTGCATATCA
213612867 T
1 T
213612868 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:213612943 original size:25 final size:25
Alignment explanation
Indices: 213612915--213612962 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
213612905 ATATATAAAC
* * *
213612915 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
213612940 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
213612963 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:213614167 original size:27 final size:27
Alignment explanation
Indices: 213614137--213614222 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 27
213614127 TACCATACAG
*
213614137 GGGTATTTTGGTAGTTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
** * ***
213614164 GGGTATTGCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGA
* **
213614191 GGGTATTTTAGTAATTTTGTAAATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
213614218 GGGTA
1 GGGTA
213614223 AAACAGTAAT
Statistics
Matches: 43, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.29, C:0.07, G:0.26, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATTGA
Found at i:213614230 original size:27 final size:27
Alignment explanation
Indices: 213614200--213614783 Score: 637
Period size: 27 Copynumber: 21.6 Consensus size: 27
213614190 AGGGTATTTT
* *
213614200 AGTAATTTTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
213614227 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
213614254 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
213614281 GGAAATACTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213614308 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
213614335 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
213614362 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * * *
213614389 GGTAATTTTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213614416 AGTAATTCTGTAAA-CTAAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
213614443 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* ** *
213614470 -GATAATTTTACAAATCGAAGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* *
213614497 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213614524 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213614551 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
213614578 AGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
213614605 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
213614632 GGTAATTCTGTAAATCGAAGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
213614659 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213614686 -GATAATTCTATAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * **
213614713 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
213614740 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
213614767 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
213614784 GGAGTACTTT
Statistics
Matches: 482, Mismatches: 59, Indels: 32
0.84 0.10 0.06
Matches are distributed among these distances:
26 7 0.01
27 467 0.97
28 8 0.02
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:213625931 original size:537 final size:539
Alignment explanation
Indices: 213623593--213636236 Score: 15990
Period size: 537 Copynumber: 23.1 Consensus size: 539
213623583 NNNNNNAAAT
213623593 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
1 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
213623658 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
66 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
213623723 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
131 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
*
213623788 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAAC-AACTTACTATGGAGCTTGGAAAGCTT
196 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT
213623852 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
261 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
*
213623917 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACA
326 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA
213623982 TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGT-AAATAATTTTCATTCA
391 TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTT-TAAAATAATTTTCATTCA
*
213624046 ATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
455 ATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
213624111 AATCACACTTTTATGA-AAA
520 AATCACACTTTTATGACAAA
213624130 TTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
1 -TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
213624195 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT-GT
65 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
213624259 TCAAACCCTA-ACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
130 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
213624323 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
195 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
*
213624388 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATT
260 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
213624453 T--CTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
325 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
213624516 ATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCA
390 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCA
* *
213624580 ATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
455 ATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
213624645 AATCACACTTTTATGACAAA
520 AATCACACTTTTATGACAAA
213624665 TTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
1 -TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
213624730 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
65 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
213624795 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
130 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
*
213624860 TTTC-AAAATGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
195 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
213624924 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
260 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
*
213624989 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGTAAAAATTA-
325 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
213625053 ATTTTTGCCCCTAAATTTTATC-TATTTACACTTTTA----A-GCTTGT-AAATAATTTTCATTC
390 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTT-TAAAATAATTTTCATTC
*
213625111 AATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACT
454 AATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACT
213625176 AAATCACACTTTTATGACAAA
519 AAATCACACTTTTATGACAAA
213625197 TTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
1 -TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
213625262 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
65 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
213625327 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
130 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
213625392 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
195 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
213625457 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
260 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
213625522 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGG-AAAAATTA-
325 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
213625585 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCA
390 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCA
*
213625650 ATTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
455 ATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
213625715 AATCACACTTTTATGACAAA
520 AATCACACTTTTATGACAAA
213625735 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
1 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
213625800 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
66 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
213625865 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
131 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
213625930 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT--AGCTTGGAAAGCTT
196 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT
213625993 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
261 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
213626058 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA
326 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA
213626123 TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCAA
391 TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCAA
*
213626188 TTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
456 TTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
213626253 ATCACAC-TTTATGACAAA
521 ATCACACTTTTATGACAAA
213626271 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
1 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
213626336 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
66 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
213626401 CAAACCCTA-ACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
131 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
213626465 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT
196 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT
*
213626530 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT
261 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
213626595 -GCTTTTATTTTGTTTATTTAAACATTTAA-TACTAAATTTTATCATACTATGGCAAAAATTAC-
326 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA
*
213626657 TTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTGCCCTAGGCTTTAAAATAATTTTCATTCAA
391 TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCAA
*
213626721 TTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
456 TTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
213626786 ATCACACTTTTATGACAAA
521 ATCACACTTTTATGACAAA
213626805 TTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
1 -TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
213626870 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
65 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
213626935 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAG-AA-AGGTAGATCATGTTACAAGGA
130 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
*
213626998 TTTC-AAAATGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
195 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
213627062 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
260 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
213627127 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTA-
325 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
213627191 ATTTTTG-CCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCA
390 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCA
213627255 ATTTATTTTCA-TTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
455 ATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
213627319 AATCACACTTTTATGACAAA
520 AATCACACTTTTATGACAAA
213627339 TTT-TAAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
1 TTTAT-AACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
213627403 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
65 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
213627468 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
130 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
213627533 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT--AGCTTGGAAAGCT
195 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
213627596 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
260 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
213627661 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
325 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
213627726 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCA
390 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCA
213627791 ATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
455 ATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
213627856 AATCACACTTTTATGACAAA
520 AATCACACTTTTATGACAAA
213627876 TTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
1 -TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
213627941 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
65 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
213628006 TCAAACCCTA-ACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
130 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
213628070 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
195 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
*
213628135 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCC-AAGGGTTGAAGATGACCAAAATT
260 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
213628199 T-GCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
325 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
*
213628263 ATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATT
390 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGC-TTTAAAATAATTTTCATT
* *
213628327 CAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCAC
453 CAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCAC
213628392 TAAATCACACTTTTATGACAAA
518 TAAATCACACTTTTATGACAAA
213628414 TTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
1 -TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
213628479 TTCT-CAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGG-
65 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
*
213628542 TCAAACCCTAGACCTTCATCATAAGTCAAATAAATGGTAG-AA-AGGTAGATCATGTTACAAGGA
130 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
* * *
213628605 TTTCAAGAATGTGAAAATCATTAAAAACGGGGCAAGAACGAACTTACTATGGAGCTTGGAAAGCT
195 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
213628670 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
260 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
*
213628735 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTAT--CAAAAATTAA
325 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
* *
213628798 ATTTTTGCCCCTAAATTTTATCTTATTTACACTTTTA--CTAGGATTGTAAAATAATTTTCATTC
390 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTT-TAAAATAATTTTCATTC
213628861 AATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACT
454 AATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACT
213628926 AAATCACACTTTTATGACAAA
519 AAATCACACTTTTATGACAAA
213628947 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
1 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
*
213629012 TCT-CAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTT
66 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
213629076 CAAACCCTAGACC-TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
131 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
*
213629140 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTT
196 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT
213629205 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
261 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
213629270 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGG-AAAAATTACA
326 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA
213629334 TTTTTG-CCCTAAATTTTATCATATTTACACTTTTACCCTA-GCTTTTAAAATAATTTT-ATTCA
391 TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGC-TTTAAAATAATTTTCATTCA
*
213629396 ATTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
455 ATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
213629461 AATCACAC-TTTATGACAAAA
520 AATCACACTTTTATGAC-AAA
213629481 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
1 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
213629546 TCTCCAACCAT-AACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGG-T
66 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
*
213629609 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAAGGAT
131 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
* *
213629674 TTC-AAAATGTGAAAATCATTAAAAACGGGGCAAGAACGAACTTACTAT-GAGCTTGGAAAGCTT
196 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT
213629737 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
261 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
* * * * *
213629802 GACTTCTATTTTGTTTATTTAAACA-TTAATTACT-AATTTTATCATACTACGGAAAAAATTAAA
326 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA
* ** *
213629865 TTTTTGCCCCTAAATTTTATCTTATTTACACTTTTAAGCTAGGATTGTAAAATAATTTTCATTCA
391 TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTT-TAAAATAATTTTCATTCA
213629930 ATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
455 ATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
213629995 AATCACACTTTTATGACAAA
520 AATCACACTTTTATGACAAA
213630015 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
1 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
* *
213630080 TCTCTAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATAGTT
66 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
213630145 CAAACCCTAGACC-TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
131 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
* * *
213630209 TTCAAAAA-TTGAAAATCATTAAAAGCGGGGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTT
196 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT
* *
213630273 AAACAAAACCCTCGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT
261 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
*
213630338 GGCTTTTATTTTATTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA
326 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA
213630403 TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTC-TTCA
391 TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGC-TTTAAAATAATTTTCATTCA
*
213630467 ATTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
455 ATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
*
213630532 AATCACAC-TTTATGAAAAA
520 AATCACACTTTTATGACAAA
213630551 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
1 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
213630616 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
66 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
*
213630681 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAAGGAT
131 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
* * * *
213630746 TTCAAAAACATGAAAATCACTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAAGCTT
196 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT
213630811 AAACAAAATCCC-AGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
261 AAACAAAA-CCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
* * *
213630875 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATGATACTACGGCAAAAATTAA
325 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
* ** * * *
213630940 ATTTTTGCCCCTAAATTTTATCTTATTTACACTTTTAAGCAAAGATTGTAAAATAATTTTCATTC
390 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTT-TAAAATAATTTTCATTC
* * * * * ****
213631005 AATTTATTTTCACCTTAAGCCCAGCAGAACCACTTT-GTAA-AAT-AATTTTCATTCAATTTATT
454 AATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCA--C-A---ATT
* * * *
213631067 TTCACCTTAAGCCCAGCAGAACCACTTTCATAACTATAA
513 TCCA-C-TAA----ATC---A-CACTTTTATGAC-A-AA
** * * * * ** * **
213631106 -AAACCCACAATTTCCACTAAATCA--CAC-TTTTATGACAAATT--TT-ATAA-CTTTTA-CAA
1 TTTA--TA-ACTTT-TAC-AAATTAGTC-CTTTTTA-G-CATTTTCATTGAAAATCACTTAGCAA
** * * ** *
213631162 ATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCA-TAAAC
58 A--AGTTGTTTCT-CCA--ACCA-T--AAA-CA--T-GCATAA------TCT---ACCATTAAAC
* * ** * *** * * * *
213631226 ATGCATAAT-CTAC-CA-TTA-AACATCAAAATACACAAATTTATAACATGGTCCAAACCCTAGA
102 AT-CAAAATAC-ACAAATTTATAACAT---GGTTCA-AACCCTA-GACCT--T-C--ATCATA-A
* * *** *
213631287 CCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAAAACGT
154 -C-TCA-AATAAATGGTAGAAA---T------AGGTAGATCATGTTACAAGGATTTCAAAAACGT
213631352 GAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCC
207 GAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAAAACCC
213631417 TAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTT
272 TAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTT
* *
213631482 TGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTGCTCCT
337 TGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCT
* *
213631547 AAATTTTATCATATTTACACTTTTACCCTAGGCTTGTACAATAATTTTCATTAAATTTATTTTCA
402 AAATTTTATCATATTTACACTTTTACCCTAGGCTT-TAAAATAATTTTCATTCAATTTATTTTCA
*
213631612 ATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
466 CTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTT
*
213631677 TATGAAAAA
531 TATGACAAA
* * *
213631686 TTTTATAAGTTTTACAAATTAGTCCTTTTTAGTATTTTCATTGAAAATCACTTGGCAAAAGTTGT
1 -TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
*
213631751 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATAGACAAATTTATAACATGGT
65 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
*
213631816 TCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
130 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
*
213631881 TTTCAAAAACGTGAAAATCATTAAAAACTGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
195 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
* *
213631946 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGACCAAGGGGTTGAAGATGACCAAAATT
260 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
** * *
213632011 TTTCTTTTATTTTGTTTATTTAAACATTTAACTACTAAATTTTATCATACTATGACAAAAATTAC
325 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
*
213632076 ATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTGCCCTTAGGCTTTTAAAATAATTTTCA-T
390 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCC-TAGGC-TTTAAAATAATTTTCATT
* ** * ** ** * * * * * *
213632139 AAACTTTA-TGACAAAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATC
453 CAA-TTTATTTTC---ACTTTA--AGCCTA--GC-CGAA--CCA-CTTT---CAT-AACTATA-A
* *** * ** * ** *
213632203 ATATTTACACTTTTAATTACTAAATTTTATCA-TACTATGGCAAAA
501 AAACCCACA-ATTT--CCACTAAA--TCA-CACTTTTATGAC-AAA
* * * * * * * *
213632248 ATTA-CATTTTTGCCCCTAAATTTTA-TCATATTTA-CACTTTTACCCTAGGCTTGTACAAT-AA
1 TTTATAACTTTT---AC-AAA--TTAGTCCTTTTTAGCA-TTTT---C-A---TTG-AAAATCAC
** * * ** * * ** * *
213632309 TTTTCATTAAATTTATTT-T-CAA-TTTAAGCCTAGCCGAA-CCA-CTTTCATAACTAT-AAAA-
51 TTAGCA--AAAGTTGTTTCTCCAACCATAAACAT-GCATAATCTACCATT-A-AAC-ATCAAAAT
* * * * * * * * * * *** * ** *
213632367 ACCCACAA-TT-T-CCA---CT-AAA-TC-ACACTTTTATGAAAAATTTTATAAGTTTTACAAAT
110 ACACA-AATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAAT
* ** * * ** ***
213632423 ---TAG-TCCT-TT-TTAGTATTTTC----A-TTGAAAATCACTTAGCAAAA-GTTGTTTCTCCA
174 AGGTAGATCATGTTACAAGGA-TTTCAAAAACGTGAAAATCA-TTA--AAAACG--G-GGCAAGA
* * * ***** * * **
213632476 AC-CA-TAAAC-ATGCA--TAATCTACCATTAAACATCAAA--ATA-CACA-AAT--T-TAT-AA
232 ACGGACT-TACTATGGAGCTTGGAAAGC-TTAAACA--AAACCCTAGC-CATGGTGGTCT-TCAA
* ** * *** * ** * ** *** * * *
213632528 CATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGG-TAGAAATTGGTAGATCATGTT
291 AAT--TTC--GGCCGAGGGGTTGAAGATGAC-CAAA-ATTTGGCT-TTTATT--TTGTTTAT-TT
* ** * * * ** * * * *
213632592 ACAAGGATTTCAAAAACGTGAAAATCATTA-AAAAC-GGGGTAAGAACGGACTTAC--TATAGAC
346 A-AA-CATTT-AATTAC-T--AAAT-TTTATCATACTATGGCAA-AA---A-TTACATTTTTGCC
* * * * * * * * * *
213632653 CTTGGAAAGCTTAAACAAAATCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGA
399 CCT--AAA-TTTTATC-ATAT-TTA--CA-------CTT-----TTAC--CCTA-GGCTT-TA-A
* ** * * ** * ****
213632718 TGACCAAAATTTTGC-TTTTATTT-TGTTT-A-TTTAAACATGTAATTACTAAATTTTTTCAT-A
440 --A--ATAATTTT-CATTCAATTTAT-TTTCACTTTAAGC--CT-A-GCCGAACCACTTTCATAA
** * *** **
213632778 CTATGGTAAAAA-TTA-AATTTATGCCCCTAAATTTTATCTTATT-T-ACACT
495 CTA---TAAAAACCCACAA-TT-T-CCACTAAATCACA-CTT-TTATGACAAA
* * * * * * ** ** * * **
213632827 TTTAAGCTAGGCTTGTA-AAATAATTTTCATTCAATTTATTTTCACTTTG---AGC-C-GAGCCG
1 TTT-A--TA-ACTTTTACAAATTA-GTCCTTTTTA-GCATTTTCA--TTGAAAATCACTTAGCAA
**** * * ** * * * *** **
213632886 AACCACTTTCAT--AACAATAAAAACCCACAAT-TTCCACTAAATCA-CACTTTTATGGCAAATT
58 AAGTTGTTTC-TCCAACCATAAACATGCATAATCTACCATTAAA-CATCA-AAATA-CACAAA-T
* * * * * ** * **
213632947 TTATAAC-T-TTTACAAA--TTAGTCCTTTTTAGCAT-TTTC-ATTGAAAATCACTTAGCAAA-A
118 TTATAACATGGTT-CAAACCCTAGACC--TTCATCATAACTCAAAT--AAAT--GGTAG-AAATA
* ** * * * * * * * * ******
213633005 GTTATTTC-TCTAACCATA-AACATGCATAATCTACCCTTAAACATCA--AAATACACAAATTTA
175 GGTAGATCATGTTA-CA-AGGA-TTTCA-AA---AACGTGAAA-ATCATTAAA-A-ACGGGGCAA
* ** * ** * * * * * *** ** *
213633066 TAACATAGTTCAAGCCCTAGACCTCCAT-CATAA-CTCAAA-TAAATGGTAGAAATAGGTAGATC
230 GAACGGACTT--A-CTATGGAGCT---TGGA-AAGCTTAAACAAAACCCTAGCCAT-GGT-GGTC
* ** * **** * ** ** * **
213633128 ATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACAGACTT-GCTATGG
286 ---TT-CAA-AATTTC---GGC-CG--AGGGGTT--GAA-GATG-ACCAA-A-ATTTGGCT-TTT
** *** * *** * * * *
213633192 AGCTTGGAAAGCTTAAACA---AAACCCTAGCCATGGTGGTCT-TCAAAATTTCGGCCGAGGGGT
333 ATTTTGTTTA-TTTAAACATTTAATTACTA--AAT--T--T-TATCATACTAT-GG-C-A-----
* * ** *** ** * *
213633253 TGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCAT
382 --AAAATTA-C-ATTTTT-GCCCCTA-AAT-TTTA--T---CA--TATTTAC--ACTTTTA-C--
* * ** * * *
213633318 ACTATGGC--AAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCT
428 CCTA-GGCTTTAAAA-TA-A-TTTT--CATTCAA--TT-T-AT-TTT-CACTTTAAGCCTA-GC-
* ** * * * * *
213633381 TGTACAATAATTTTCATTAAATTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATA
479 CG---AACCACTTTCA-T-AA-CTA---T-AA---AA----A-CC-CA-CAATTTC--CAC--T-
* * * **
213633446 AAAACCCACAATTTCCACTAAATCACACT
519 -AAA-TCACACTTT----T--ATGACAAA
* * * * * ***
213633475 TTTATGAAAATTTTATAAGTT-TTACAAATTAGTCCTTTTTAGTATTTTCATTGAAAATCACTTA
1 TTTAT--AACTTTTACAAATTAGTCCTTTTTAG--C--------ATTTTCATTGAAAATCACTTA
213633539 GCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
54 GCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATT
*
213633604 TATAACATGGTTCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCA
119 TATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCA
* *
213633669 TGTTACAAGGATTTCAAAAATGTGAAAATCATTAAAAACGGGGCAAGAGCGGACTTACTATGGAG
184 TGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAG
* *
213633734 CTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAATA
249 CTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGA
* ** *
213633799 TGACAAAAATTTTTCTTTTATTTTGTTTATTTAAACATTTAACTACTAAATTTTATCATACTATG
314 TGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATG
* *
213633864 GCAAAAATTACGTTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTGCCCCTAGGCTTTTAAAA
379 GCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGC-TTTAAAA
* * *
213633928 TAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATGAAAACCC
442 TAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCC
213633993 ACAATTTCCACTAAATCACACTTTTATGACAAA
507 ACAATTTCCACTAAATCACACTTTTATGACAAA
* *
213634026 TTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGAAAAAGTTGT
1 -TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
*
213634091 TTCTCCAACCATATACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
65 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
*
213634156 TCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
130 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
* *
213634221 TTTTAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGTTTGGAAAGCT
195 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
*
213634286 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGA-CAAAACT
260 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAA-T
** *
213634350 TTTTCTTTTATTTTGTTTATTTAAACATTTAACTACTAAATTTTATCATACTATGGCAAAAATTA
324 TTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTA
213634415 CATTTTTG------------------------C-----CCCTAGGCTTTTAAAATAATTTTCATT
389 CATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGC-TTTAAAATAATTTTCATT
* *
213634451 CAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCAC
453 CAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCAC
213634516 TAAATCACACTTTTATGACAAA
518 TAAATCACACTTTTATGACAAA
*
213634538 TTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGCAAAAGTTGT
1 -TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
* *
213634603 TTCTCCAACCACATACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
65 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
* *
213634668 TCAAACCCTAGACCTTCATCATAAGTTAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
130 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
* * *
213634733 TTTCAAGAATGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAAGCT
195 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
*
213634798 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGATGATGACCAAAATT
260 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
* * *
213634863 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATAATACTACGGCAAAAATTAA
325 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
* ** * * *
213634928 ATTTTTGCCCCTAAATTTTATCTTATTTACACTTTTAAGCAAAGATTGTAAAATAATTTTCATTC
390 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTT-TAAAATAATTTTCATTC
* *
213634993 AATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCACT
454 AATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACT
213635058 AAATCACACTTTTATGACAAA
519 AAATCACACTTTTATGACAAA
*
213635079 TTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGCAAAAGTTGT
1 -TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGT
* * *
213635144 TTCTCCAACCATATACATGCATTATCTACCGTTAAACATCAAAATACACAAATTTATAACATGGT
65 TTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGT
*
213635209 TCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
130 TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGA
* *
213635274 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAAGCT
195 TTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCT
*
213635339 TAAATAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
260 TAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATT
213635404 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
325 TGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTAC
* *
213635469 ATTTTTGCCCTTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTA
390 ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGC-TTTAAAATAATTTTCATTC
* *
213635534 AATTTATTTTCAATTTAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACT
454 AATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACT
213635599 AAATCACAC-TTTATGACAAAA
519 AAATCACACTTTTATGAC-AAA
213635620 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
1 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
213635685 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
66 TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
*
213635750 CAAACCCTAGACCTTCATCATAACTCAAATAGATGGTAGAAATAGGTAGATCATGTTACAAGGAT
131 CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
* * *
213635815 TTCAAAAACGTGAAAATCATTTAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAAGCTT
196 TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT
* *
213635880 AAACAAAACCCTAGCCTTGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTT
261 AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
213635945 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA
326 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA
*
213636010 TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCTTTCA
391 TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGC-TTTAAAATAATTTTCATTCA
* *
213636075 ATTTATTTTCAATTTAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCCACTA
455 ATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
213636140 AATCACAC-TTTATGACAAAA
520 AATCACACTTTTATGAC-AAA
*
213636160 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGCAAAAGTTGTT
1 TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
213636225 TCTCCAACCATA
66 TCTCCAACCATA
213636237 TATGTAACAT
Statistics
Matches: 10737, Mismatches: 815, Indels: 1106
0.85 0.06 0.09
Matches are distributed among these distances:
512 486 0.05
513 5 0.00
518 1 0.00
530 17 0.00
531 24 0.00
532 622 0.06
533 796 0.07
534 1072 0.10
535 1084 0.10
536 894 0.08
537 1212 0.11
538 925 0.09
539 96 0.01
540 637 0.06
541 1209 0.11
542 10 0.00
543 6 0.00
544 3 0.00
545 4 0.00
547 3 0.00
548 4 0.00
549 1 0.00
550 22 0.00
551 23 0.00
552 11 0.00
553 19 0.00
554 21 0.00
555 33 0.00
556 31 0.00
557 40 0.00
558 17 0.00
559 29 0.00
560 17 0.00
561 26 0.00
562 22 0.00
563 32 0.00
564 20 0.00
565 19 0.00
566 20 0.00
567 4 0.00
568 16 0.00
569 11 0.00
570 26 0.00
571 23 0.00
572 35 0.00
573 14 0.00
574 24 0.00
575 19 0.00
576 8 0.00
577 22 0.00
578 7 0.00
579 35 0.00
580 23 0.00
581 18 0.00
582 32 0.00
583 9 0.00
584 12 0.00
585 10 0.00
586 21 0.00
587 10 0.00
588 7 0.00
589 6 0.00
590 12 0.00
591 7 0.00
592 19 0.00
593 3 0.00
594 13 0.00
595 307 0.03
596 15 0.00
597 21 0.00
598 4 0.00
599 8 0.00
600 5 0.00
601 2 0.00
602 3 0.00
604 1 0.00
605 2 0.00
607 9 0.00
608 10 0.00
609 12 0.00
610 10 0.00
611 7 0.00
612 14 0.00
613 4 0.00
614 11 0.00
615 10 0.00
616 7 0.00
617 7 0.00
618 3 0.00
619 4 0.00
620 7 0.00
621 16 0.00
622 12 0.00
624 3 0.00
625 12 0.00
626 17 0.00
627 4 0.00
628 8 0.00
629 3 0.00
630 2 0.00
632 3 0.00
633 1 0.00
635 2 0.00
636 2 0.00
637 3 0.00
638 6 0.00
639 4 0.00
640 3 0.00
641 5 0.00
642 1 0.00
643 6 0.00
644 10 0.00
645 14 0.00
646 10 0.00
647 7 0.00
648 8 0.00
649 12 0.00
650 6 0.00
651 3 0.00
652 3 0.00
653 2 0.00
654 14 0.00
655 14 0.00
656 13 0.00
657 28 0.00
658 22 0.00
659 16 0.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (539 bp):
TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTT
TCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTT
CAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGAT
TTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTT
AAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTT
GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACA
TTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTAAAATAATTTTCATTCAA
TTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
ATCACACTTTTATGACAAA
Found at i:213631044 original size:54 final size:54
Alignment explanation
Indices: 213630985--213631094 Score: 220
Period size: 54 Copynumber: 2.0 Consensus size: 54
213630975 TAAGCAAAGA
213630985 TTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCCAGCAGAACCACT
1 TTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCCAGCAGAACCACT
213631039 TTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCCAGCAGAACCACT
1 TTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCCAGCAGAACCACT
213631093 TT
1 TT
213631095 CATAACTATA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (54 bp):
TTGTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCCAGCAGAACCACT
Found at i:213632073 original size:541 final size:541
Alignment explanation
Indices: 213623589--213636236 Score: 16104
Period size: 541 Copynumber: 23.1 Consensus size: 541
213623579 NNNNNNNNNN
213623589 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213623654 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
213623719 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
*
213623784 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAAC-AACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
213623848 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
*
213623913 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
*
213623978 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGT-AAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
*
213624042 TTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213624107 ACTAAATCACACTTTTATGA-
521 ACTAAATCACACTTTTATGAC
213624127 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213624192 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
213624257 -GTTCAAACCCTA-ACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
213624320 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
*
213624385 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
213624450 ATTT--CTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
213624513 TACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTACCCTAGGC-TTTAAAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
* *
213624576 TTCAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213624641 ACTAAATCACACTTTTATGAC
521 ACTAAATCACACTTTTATGAC
213624662 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213624727 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
213624792 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
*
213624857 GGATTTC-AAAATGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
213624921 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
*
213624986 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGTAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
*
213625051 TA-ATTTTTGCCCCTAAATTTTATC-TATTTACACTTTTA----A-GCTTGT-AAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
*
213625108 TTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213625173 ACTAAATCACACTTTTATGAC
521 ACTAAATCACACTTTTATGAC
213625194 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213625259 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
213625324 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
213625389 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
213625454 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
213625519 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGG-AAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
213625583 TA-ATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGC-TTTAAAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
*
213625646 TTCAATTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213625711 ACTAAATCACACTTTTATGAC
521 ACTAAATCACACTTTTATGAC
213625732 AAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213625796 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
213625861 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
213625926 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT--AGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
213625989 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
213626054 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
213626119 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGC-TTTAAAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
*
213626183 TTCAATTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213626248 ACTAAATCACAC-TTTATGAC
521 ACTAAATCACACTTTTATGAC
213626268 AAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213626332 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
213626397 GGTTCAAACCCTA-ACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
213626461 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
*
213626526 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
213626591 ATTT-GCTTTTATTTTGTTTATTTAAACATTTAA-TACTAAATTTTATCATACTATGGCAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
*
213626654 TAC-TTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTGCCCTAGGC-TTTAAAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
*
213626716 TTCAATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213626781 ACTAAATCACACTTTTATGAC
521 ACTAAATCACACTTTTATGAC
213626802 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213626867 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
213626932 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAG-AA-AGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
*
213626995 GGATTTC-AAAATGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
213627059 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
213627124 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
213627189 TA-ATTTTTG-CCCTAAATTTTATCATATTTACACTTTTACCCTAGGC-TTTAAAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
213627251 TTCAATTTATTTTCA-TTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213627315 ACTAAATCACACTTTTATGAC
521 ACTAAATCACACTTTTATGAC
213627336 AAATTTTA-AACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213627400 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
213627465 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
213627530 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTAT--AGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
213627593 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
213627658 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
213627723 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGC-TTTAAAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
213627787 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213627852 ACTAAATCACACTTTTATGAC
521 ACTAAATCACACTTTTATGAC
213627873 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213627938 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
213628003 GGTTCAAACCCTA-ACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
213628067 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
*
213628132 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCC-AAGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
213628196 ATTT-GCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
*
213628260 TACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTC
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGCTTTTAAAATAATTTTC
* *
213628324 ATTCAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTC
455 ATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTC
213628389 CACTAAATCACACTTTTATGAC
520 CACTAAATCACACTTTTATGAC
213628411 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213628476 TGTTTCT-CAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
*
213628540 GG-TCAAACCCTAGACCTTCATCATAAGTCAAATAAATGGTAG-AA-AGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
* * *
213628602 GGATTTCAAGAATGTGAAAATCATTAAAAACGGGGCAAGAACGAACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
213628667 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
213628732 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTAT--CAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
* * * *
213628795 TAAATTTTTGCCCCTAAATTTTATCTTATTTACACTTTTA--CTAGGATTGTAAAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
213628858 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213628923 ACTAAATCACACTTTTATGAC
521 ACTAAATCACACTTTTATGAC
213628944 AAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213629008 TGTTTCT-CAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
*
213629072 AGTTCAAACCCTAGACC-TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
*
213629136 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
213629201 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
213629266 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGG-AAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
213629330 TACATTTTTG-CCCTAAATTTTATCATATTTACACTTTTACCCTA-GCTTTTAAAATAATTTT-A
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
*
213629392 TTCAATTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213629457 ACTAAATCACAC-TTTATGAC
521 ACTAAATCACACTTTTATGAC
*
213629477 AAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213629542 TGTTTCTCCAACCAT-AACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
*
213629606 GG-TCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
* *
213629670 GGATTTC-AAAATGTGAAAATCATTAAAAACGGGGCAAGAACGAACTTACTAT-GAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
213629733 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
* * * *
213629798 ATTTGACTTCTATTTTGTTTATTTAAACA-TTAATTACT-AATTTTATCATACTACGGAAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
* * ** * *
213629861 TAAATTTTTGCCCCTAAATTTTATCTTATTTACACTTTTAAGCTAGGATTGTAAAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
213629926 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213629991 ACTAAATCACACTTTTATGAC
521 ACTAAATCACACTTTTATGAC
213630012 AAA-TTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
*
213630076 TGTTTCTCTAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
*
213630141 AGTTCAAACCCTAGACC-TCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
* * *
213630205 GGATTTCAAAAA-TTGAAAATCATTAAAAGCGGGGCAAGAACAGACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
* *
213630269 GCTTAAACAAAACCCTCGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
*
213630334 ATTTGGCTTTTATTTTATTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
213630399 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTC-
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
*
213630463 TTCAATTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213630528 ACTAAATCACAC-TTTATGA-
521 ACTAAATCACACTTTTATGAC
*
213630547 AAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213630612 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
*
213630677 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATTGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
* * * *
213630742 GGATTTCAAAAACATGAAAATCACTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
213630807 GCTTAAACAAAATCCC-AGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAA
261 GCTTAAACAAAA-CCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAA
* *
213630871 AATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATGATACTACGGCAAAAA
325 AATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAA
* * ** * * * *
213630936 TTAAATTTTTGCCCCTAAATTTTATCTTATTTACACTTTTAAGCAAAGATTGTAAAATAATTTTC
390 TTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTC
* * * * * ****
213631001 ATTCAATTTATTTTCACCTTAAGCCCAGCAGAACCACTTT-GTAA-AAT-AATTTTCATTCAATT
455 ATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCA--C-A--
* * * *
213631063 TATTTTCACCTTAAGCCCAGCAGAACCACTTTCATAAC
515 -ATTTCCA-C-TAA----ATC---A-CACTTTTATGAC
**** * * * ** * **
213631101 TATAAAAACCCACAA-TTTCCACTAAATCA--CAC-TTTTATGACAAATT--TT-ATAA-CTTTT
1 ----AAATTTTATAACTTT-TAC-AAATTAGTC-CTTTTTA-G-CATTTTCATTGAAAATCACTT
** * * ** *
213631158 A-CAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCA-
57 AGCAAA--AGTTGTTTCT-CCA--ACCA-T--AAA-CA--T-GCATAA------TCT---ACCAT
* * ** * *** * * *
213631221 TAAACATGCATAAT-CTAC-CA-TTA-AACATCAAAATACACAAATTTATAACATGGTCCAAACC
101 TAAACAT-CAAAATAC-ACAAATTTATAACAT---GGTTCA-AACCCTA-GACCT--T-C--ATC
* * * *** *
213631282 CTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATTTCAAA
154 ATA-A-C-TCA-AATAAATGGTAGAAA---T------AGGTAGATCATGTTACAAGGATTTCAAA
213631347 AACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAA
206 AACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAAGCTTAAACAA
213631412 AACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTT
271 AACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAAATTTGGCTTT
*
213631477 TATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGAAAAAATTACATTTTTG
336 TATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAATTACATTTTTG
* * * *
213631542 CTCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTACAATAATTTTCATTAAATTTAT
401 CCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCATTCAATTTAT
*
213631607 TTTCAATTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAC
466 TTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCAC
*
213631672 ACTTTTATGAA
531 ACTTTTATGAC
* * *
213631683 AAATTTTATAAGTTTTACAAATTAGTCCTTTTTAGTATTTTCATTGAAAATCACTTGGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
*
213631748 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATAGACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
*
213631813 GGTTCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
*
213631878 GGATTTCAAAAACGTGAAAATCATTAAAAACTGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
* *
213631943 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGACCAAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
** * *
213632008 ATTTTTCTTTTATTTTGTTTATTTAAACATTTAACTACTAAATTTTATCATACTATGACAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
*
213632073 TACATTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTGCCCTTAGGCTTTTAAAATAATTTTC
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCC-TAGGCTTTTAAAATAATTTTC
* ** * ** * * * * ****
213632137 A-TAAACTTTA-TGACAAAATTTTATCATACTATGGC-AA-AAATTACAT---T-T-TTGCCCCT
455 ATTCAA-TTTATTTTC---ACTTTA--AGCCTA-GCCGAACCACTTTCATAACTATAAAAACCC-
* * * *
213632193 A-AATTT-TA-TCATATTTACACTTTTAATTAC
512 ACAATTTCCACT-A-AATCACACTTTT-ATGAC
** * * *** ** * ** *
213632223 TAAATTTTATCATACTATGGCAAAAATTA--CATTTTT-GCCCCTAAATTTTATCAT-ATTTA-C
1 -AAATTTTAT-A-ACT-T-TTACAAATTAGTCCTTTTTAGCATTTTCA-TTGAAAATCACTTAGC
* * ** * ** ** *
213632283 ---ACTT-TTAC-CCTAGGCTTGTACA---ATAAT-TTTCATTAAATTTATTTTCAATTTAAGCC
60 AAAAGTTGTTTCTCC-AACCATAAACATGCATAATCTACCATTAAA--CA---TCAA---AA---
* ** * * * * *
213632339 TAGC-CGAACCACTTTCATAAC-T-ATAAAAACCC-ACA-ATT--TC--CACT-AAATCACACTT
113 TA-CAC-AA--A-TTT-ATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAAT-A-AATG
* ** ** * * **** ***
213632394 TTATGAAA-AATTTTATAAGTTTTACAA--ATTAGTCCTTTTTA-GT-ATTTTCATTGAAAATCA
170 GTA-GAAATAGGTAGATCA-TGTTACAAGGATT--T-C-AAAAACGTGAAAATCATT-AAAA--A
*** * * * * * * * * *
213632454 CTTAGCAA-AA-GTTGTTTCTCCAACCAT-AAACATGCATAATCTACCATTAAACATCAAA--AT
226 CGGGGCAAGAACG--G--ACT--TACTATGGAGCTTG--GAA---AGC-TTAAACA--AAACCCT
** * ** * *** * ** * **
213632514 A-CACA-AAT--T-TAT-AACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGG-T
277 AGC-CATGGTGGTCT-TCAAAAT--TTC--GGCCGAGGGGTTGAAGATGAC-CAAA-ATTTGGCT
*** * * * * ** * * * ** *
213632572 AGAAATTGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTA-AAAAC-GGGGTAAG
334 -TTTATT--TTGTTTAT-TTA-AA-CATTT-AATTAC-T--AAAT-TTTATCATACTATGGCAA-
* * * * * * * * *
213632635 AACGGACTTAC--TATAGACCTTGGAAAGCTTAAACAAAATCCTAGCCATGGTGGTCTTCAAAAT
387 AA---A-TTACATTTTTGCCCCT--AAA-TTTTATC-ATAT-TTA--CA-------CTT-----T
* * * ** * ** * *
213632698 TTCGGCCGAGGGGTTGAAGATGACCAAAATTTTGC-TTTTATTT-TGTTT-A-TTTAAACATGTA
429 TAC--CCTA-GGCTTTTA-A--A--ATAATTTT-CATTCAATTTAT-TTTCACTTTAAGC--CT-
** * **** ** * ***
213632759 ATTACTAAATTTTTTCAT-ACTATGGTAAAAA-TTA-AATTTATGCCCCTAAATTTTATCTTATT
481 A-GCCGAACCACTTTCATAACTA---TAAAAACCCACAA-TT-T-CCACTAAATCACA-CTT-TT
213632821 -T-AC
537 ATGAC
* * * * * * * ** ** * *
213632824 -ACTTTTAAGCTAGGCTTGTA-AAATAATTTTCATTCAATTTATTTTCACTTTG---AGC-C-GA
1 AAATTTT-A--TA-ACTTTTACAAATTA-GTCCTTTTTA-GCATTTTCA--TTGAAAATCACTTA
** **** * * ** * * * *** **
213632882 GCCGAACCACTTTCAT--AACAATAAAAACCCACAAT-TTCCACTAAATCA-CACTTTTATGGCA
58 GCAAAAGTTGTTTC-TCCAACCATAAACATGCATAATCTACCATTAAA-CATCA-AAATA-CACA
* * * * * ** * **
213632943 AATTTTATAAC-T-TTTACAAA--TTAGTCCTTTTTAGCAT-TTTC-ATTGAAAATCACTTAGCA
119 AA-TTTATAACATGGTT-CAAACCCTAGACC--TTCATCATAACTCAAAT--AAAT--GGTAG-A
* ** * * * * * * * * ***
213633002 AA-AGTTATTTC-TCTAACCATA-AACATGCATAATCTACCCTTAAACATCA--AAATACACAAA
175 AATAGGTAGATCATGTTA-CA-AGGA-TTTCA-AA---AACGTGAAA-ATCATTAAA-A-ACGGG
*** * ** * ** * * * * * *** **
213633062 TTTATAACATAGTTCAAGCCCTAGACCTCCAT-CATAA-CTCAAA-TAAATGGTAGAAATAGGTA
230 GCAAGAACGGACTT--A-CTATGGAGCT---TGGA-AAGCTTAAACAAAACCCTAGCCAT-GGT-
* * ** * **** * ** ** *
213633124 GATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACAGACTT-GCT
286 GGTC---TT-CAA-AATTTC---GGC-CG--AGGGGTT--GAA-GATG-ACCAA-A-ATTTGGCT
** ** *** * *** * * * *
213633188 ATGGAGCTTGGAAAGCTTAAACA---AAACCCTAGCCATGGTGGTCT-TCAAAATTTCGGCCGAG
334 -TTTATTTTGTTTA-TTTAAACATTTAATTACTA--AAT--T--T-TATCATACTAT-GG-C-A-
* * ** *** ** * *
213633249 GGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTA
386 ------AAAATTA-C-ATTTTT-GCCCCTA-AAT-TTTA--T---CA--TATTTAC--ACTTTTA
* * ** * * *
213633314 TCATACTATGGC---AAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCT
431 -C--CCTA-GGCTTTTAAAA-TA-A-TTTT--CATTCAA--TT-T-AT-TTT-CACTTTAAGCCT
* ** * * * * *
213633376 AGGCTTGTACAATAATTTTCATTAAATTTATTTTCAATTTAAGCCTAGCCGAACCACTTTCATAA
481 A-GC-CG---AACCACTTTCA-T-AA-CTA---T-AA---AA----A-CC-CA-CAATTTC--CA
* * * *
213633441 CTATAAAAACCCACAATTTCCACTAAATC
522 C--T--AAA-TCACACTTT-TA-T-GA-C
* * * * * * ***
213633470 ACACTTTTATGAAAATTTTATAAGTT-TTACAAATTAGTCCTTTTTAGTATTTTCATTGAAAATC
1 A-AATTTTAT--AACTTTTACAAATTAGTCCTTTTTAG--C--------ATTTTCATTGAAAATC
213633534 ACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACAC
53 ACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACAC
*
213633599 AAATTTATAACATGGTTCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTA
118 AAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTA
* *
213633664 GATCATGTTACAAGGATTTCAAAAATGTGAAAATCATTAAAAACGGGGCAAGAGCGGACTTACTA
183 GATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTA
*
213633729 TGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTT
248 TGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTT
* * ** *
213633794 GAATATGACAAAAATTTTTCTTTTATTTTGTTTATTTAAACATTTAACTACTAAATTTTATCATA
313 GAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATA
* *
213633859 CTATGGCAAAAATTACGTTTTTGCCCCTAAATTTTATCAT-TTTACACTTTTGCCCCTAGGCTTT
378 CTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGCTTT
* * *
213633923 TAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATGAA
442 TAAAATAATTTTCATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAA
213633988 AACCCACAATTTCCACTAAATCACACTTTTATGAC
507 AACCCACAATTTCCACTAAATCACACTTTTATGAC
* *
213634023 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGAAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
*
213634088 TGTTTCTCCAACCATATACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
*
213634153 GGTTCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
* *
213634218 GGATTTTAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGTTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
*
213634283 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGA-CAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
** *
213634347 ACTTTTTCTTTTATTTTGTTTATTTAAACATTTAACTACTAAATTTTATCATACTATGGCAAAAA
326 A-TTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAA
213634412 TTACATTTTTG------------------------C-----CCCTAGGCTTTTAAAATAATTTTC
390 TTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTC
* *
213634448 ATTCAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTC
455 ATTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTC
213634513 CACTAAATCACACTTTTATGAC
520 CACTAAATCACACTTTTATGAC
*
213634535 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
* *
213634600 TGTTTCTCCAACCACATACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
* *
213634665 GGTTCAAACCCTAGACCTTCATCATAAGTTAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
* * *
213634730 GGATTTCAAGAATGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
*
213634795 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGATGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
* *
213634860 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATAATACTACGGCAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
* * ** * * * *
213634925 TAAATTTTTGCCCCTAAATTTTATCTTATTTACACTTTTAAGCAAAGATTGTAAAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
* *
213634990 TTCAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213635055 ACTAAATCACACTTTTATGAC
521 ACTAAATCACACTTTTATGAC
*
213635076 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
* * *
213635141 TGTTTCTCCAACCATATACATGCATTATCTACCGTTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
*
213635206 GGTTCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
* *
213635271 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
*
213635336 GCTTAAATAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
213635401 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
*
213635466 TACATTTTTGCCCTTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
* * *
213635531 TTAAATTTATTTTCAATTTAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213635596 ACTAAATCACAC-TTTATGAC
521 ACTAAATCACACTTTTATGAC
*
213635616 AAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213635681 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
66 TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
*
213635746 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAGATGGTAGAAATAGGTAGATCATGTTACAA
131 GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
* * *
213635811 GGATTTCAAAAACGTGAAAATCATTTAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAA
196 GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
* *
213635876 GCTTAAACAAAACCCTAGCCTTGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAA
261 GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
213635941 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
326 ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
*
213636006 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCT
391 TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
* *
213636071 TTCAATTTATTTTCAATTTAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTCC
456 TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
213636136 ACTAAATCACAC-TTTATGAC
521 ACTAAATCACACTTTTATGAC
* *
213636156 AAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGCAAAAGT
1 AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
213636221 TGTTTCTCCAACCATA
66 TGTTTCTCCAACCATA
213636237 TATGTAACAT
Statistics
Matches: 10756, Mismatches: 813, Indels: 1080
0.85 0.06 0.09
Matches are distributed among these distances:
512 486 0.05
513 5 0.00
518 1 0.00
530 17 0.00
531 24 0.00
532 615 0.06
533 810 0.08
534 1074 0.10
535 1093 0.10
536 891 0.08
537 1226 0.11
538 937 0.09
539 111 0.01
540 647 0.06
541 1232 0.11
542 22 0.00
543 39 0.00
544 21 0.00
545 20 0.00
546 12 0.00
547 9 0.00
548 8 0.00
549 10 0.00
550 24 0.00
551 17 0.00
552 13 0.00
553 11 0.00
554 13 0.00
555 27 0.00
556 17 0.00
557 29 0.00
558 14 0.00
559 20 0.00
560 9 0.00
561 16 0.00
562 17 0.00
563 9 0.00
564 15 0.00
565 5 0.00
566 16 0.00
567 4 0.00
568 6 0.00
569 1 0.00
570 12 0.00
571 7 0.00
572 9 0.00
573 6 0.00
574 15 0.00
575 15 0.00
576 7 0.00
577 13 0.00
578 12 0.00
579 16 0.00
580 12 0.00
581 11 0.00
582 17 0.00
583 5 0.00
584 2 0.00
585 5 0.00
586 21 0.00
587 3 0.00
588 5 0.00
589 4 0.00
590 12 0.00
591 7 0.00
592 14 0.00
593 3 0.00
594 23 0.00
595 313 0.03
596 11 0.00
597 21 0.00
598 10 0.00
599 18 0.00
600 19 0.00
601 17 0.00
602 25 0.00
603 10 0.00
604 25 0.00
605 10 0.00
606 3 0.00
607 25 0.00
608 10 0.00
609 12 0.00
610 10 0.00
611 7 0.00
612 14 0.00
613 4 0.00
614 11 0.00
615 10 0.00
616 7 0.00
617 7 0.00
618 3 0.00
619 4 0.00
620 7 0.00
621 16 0.00
622 12 0.00
624 3 0.00
625 12 0.00
626 17 0.00
627 4 0.00
628 8 0.00
629 3 0.00
630 2 0.00
632 3 0.00
633 1 0.00
635 2 0.00
636 2 0.00
637 3 0.00
638 6 0.00
639 4 0.00
640 3 0.00
641 5 0.00
642 1 0.00
643 7 0.00
644 9 0.00
645 15 0.00
646 11 0.00
647 6 0.00
648 6 0.00
649 12 0.00
650 6 0.00
651 3 0.00
652 3 0.00
653 2 0.00
654 14 0.00
655 14 0.00
656 13 0.00
657 28 0.00
658 22 0.00
659 16 0.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (541 bp):
AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATCACTTAGCAAAAGT
TGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACAT
GGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAA
GGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGCTTGGAAA
GCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGAAGATGACCAAA
ATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAAT
TACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTCA
TTCAATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCC
ACTAAATCACACTTTTATGAC
Found at i:213632236 original size:72 final size:72
Alignment explanation
Indices: 213632152--213632289 Score: 276
Period size: 72 Copynumber: 1.9 Consensus size: 72
213632142 CTTTATGACA
213632152 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
213632217 AATTACT
66 AATTACT
213632224 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
1 AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
213632289 A
66 A
213632290 CCCTAGGCTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.44
Consensus pattern (72 bp):
AAATTTTATCATACTATGGCAAAAATTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTT
AATTACT
Found at i:213634872 original size:512 final size:514
Alignment explanation
Indices: 213633900--213636238 Score: 3450
Period size: 540 Copynumber: 4.4 Consensus size: 514
213633890 TTTTATCATT
*
213633900 TTACACTTTTG-C-CCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTA
1 TTACATTTTTGTCTCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTA
*
213633963 GCAGAACCACTTTCATAACTATGAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATT
66 GCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATT
*
213634028 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGAAAAAGTTGTTT
131 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGCAAAAGTTGTTT
213634093 CTCCAACCATATACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTC
196 CTCCAACCATATACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTC
213634158 AAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
261 AAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
* * **
213634223 TTAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATGGAGTTTGGAAAGCTTA
326 TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAAGCTTA
213634288 AACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGA-CAAAACTTT
391 AACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAA-TTT
** *
213634352 TTCTTTTATTTTGTTTATTTAAACATTTAACTACTAAATTTTATCATACTATGGCAAAAA
455 GGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAA
213634412 TTACATTTTTG-C-CCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTA
1 TTACATTTTTGTCTCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTA
213634475 GCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATT
66 GCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATT
213634540 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGCAAAAGTTGTTT
131 TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGCAAAAGTTGTTT
*
213634605 CTCCAACCACATACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTC
196 CTCCAACCATATACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTC
* * *
213634670 AAACCCTAGACCTTCATCATAAGTTAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
261 AAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
* * * * *
213634735 TCAAGAATGTGAAAATCATTAAAAACGGGGCAAGAACAGACTTACTATGGAGCTTGGAAAGCTTA
326 TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAAGCTTA
* *
213634800 AACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGGGTTGATGATGACCAAAATTTG
391 AACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTG
* *
213634865 GCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATAATACTACGGCAAAAA
456 GCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAA
* * * *
213634924 TTAAATTTTTGCCCCTAAATTTTATCTTATTTACACTTTTAAGCAAAGATTGTAAAATAATTTTC
1 TTACATTTTTG-------------TC-----T-C-C--CT-AG----GCTTTTAAAATAATTTTC
213634989 ATTCAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTC
39 ATTCAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTC
213635054 CACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCA
104 CACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCA
* *
213635119 TTGAAAATAACTTAGCAAAAGTTGTTTCTCCAACCATATACATGCATTATCTACCGTTAAACATC
169 TTGAAAATAACTTAGCAAAAGTTGTTTCTCCAACCATATACATGCATAATCTACCATTAAACATC
213635184 AAAATACACAAATTTATAACATGGTTCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAG
234 AAAATACACAAATTTATAACATGGTTCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAG
213635249 AAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACG
299 AAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACG
*
213635314 GACTTACTATAGACCTTGGAAAGCTTAAATAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGC
364 GACTTACTATAGACCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGC
*
213635379 CGAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAAT
429 CAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAAT
213635444 TTTATCATACTATGGCAAAAA
494 TTTATCATACTATGGCAAAAA
213635465 TTACATTTTTGCCCTTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTC
1 TTACATTTTTG--------------------T---C---T-CCCTAGGCTTTTAAAATAATTTTC
* ** * *
213635530 ATTAAATTTATTTTCAATTTAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTC
39 ATTCAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTC
*
213635595 CACTAAATCACAC-TTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCA
104 CACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCA
* *
213635659 TTGAAAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATC
169 TTGAAAATAACTTAGCAAAAGTTGTTTCTCCAACCATATACATGCATAATCTACCATTAAACATC
* *
213635724 AAAATACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAGATGGTAG
234 AAAATACACAAATTTATAACATGGTTCAAACCCTAAACCTTCATCATAACTCAAATAAATGGTAG
*
213635789 AAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTTAAAACGGGGCAAGAACG
299 AAATAGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACG
*
213635854 GACTTACTATAGACCTTGGAAAGCTTAAACAAAACCCTAGCCTTGGTGGTCTTCAAAATTTCGGC
364 GACTTACTATAGACCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGC
213635919 CAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAAT
429 CAAGGGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAAT
213635984 TTTATCATACTATGGCAAAAA
494 TTTATCATACTATGGCAAAAA
213636005 TTACATTTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTTTAAAATAATTTTC
1 TTACATTTTTG--------------------T---C---T-CCCTAGGCTTTTAAAATAATTTTC
* ** * *
213636070 TTTCAATTTATTTTCAATTTAAGCCTAGCCGATCCACTTTCATAACTATAAAAACCCACAATTTC
39 ATTCAATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTC
*
213636135 CACTAAATCACAC-TTTATGACAAAATTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCA
104 CACTAAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCA
213636199 TTGAAAATAACTTAGCAAAAGTTGTTTCTCCAACCATATA
169 TTGAAAATAACTTAGCAAAAGTTGTTTCTCCAACCATATA
213636239 TGTAACATCC
Statistics
Matches: 1714, Mismatches: 73, Indels: 52
0.93 0.04 0.03
Matches are distributed among these distances:
512 497 0.29
513 5 0.00
526 1 0.00
533 1 0.00
534 1 0.00
536 1 0.00
537 2 0.00
540 615 0.36
541 576 0.34
545 2 0.00
546 1 0.00
548 6 0.00
549 5 0.00
551 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (514 bp):
TTACATTTTTGTCTCCCTAGGCTTTTAAAATAATTTTCATTCAATTTATTTTCACCTTAAGCCTA
GCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAAATCACACTTTTATGACAAATT
TTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAAATAACTTAGCAAAAGTTGTTT
CTCCAACCATATACATGCATAATCTACCATTAAACATCAAAATACACAAATTTATAACATGGTTC
AAACCCTAAACCTTCATCATAACTCAAATAAATGGTAGAAATAGGTAGATCATGTTACAAGGATT
TCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTACTATAGACCTTGGAAAGCTTA
AACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGGGTTGAAGATGACCAAAATTTG
GCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATCATACTATGGCAAAAA
Found at i:213636294 original size:20 final size:20
Alignment explanation
Indices: 213636269--213636306 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
213636259 GTTTATTCGC
*
213636269 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
213636289 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
213636307 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:213644273 original size:20 final size:20
Alignment explanation
Indices: 213644248--213644285 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
213644238 GTTTATTCGC
*
213644248 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
213644268 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
213644286 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:213645921 original size:14 final size:14
Alignment explanation
Indices: 213645904--213645940 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
213645894 AACATAATAA
* *
213645904 AAATAAAATAATCC
1 AAATTAAATAAACC
213645918 AAATTAAATAAACC
1 AAATTAAATAAACC
213645932 AAATTAAAT
1 AAATTAAAT
213645941 GCTAAACTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.65, C:0.11, G:0.00, T:0.24
Consensus pattern (14 bp):
AAATTAAATAAACC
Found at i:213650222 original size:536 final size:541
Alignment explanation
Indices: 213647113--213651114 Score: 7466
Period size: 537 Copynumber: 7.5 Consensus size: 541
213647103 CACGCCTAAA
* * *
213647113 TTTTGCCCCTAAATTTTGTCAT-TTTACACTTTTGCCCCTAGGCTTTTAAAATAATTTTCATTCA
1 TTTTGCCCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCA
*
213647177 ATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCC-CAATTTCCACTA
65 ATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
213647241 AATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAA
130 AATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAA
213647306 AATCACTTAGCAAAAGTTGTTTCTCCAACCAT-AACATGCATAATCTACCATTAAACATCAAAAT
195 AATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAAT
* *
213647370 ACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAGTCAAATAAATGGAAGAAATA
260 ACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATA
* *
213647435 GGTAGATCATGTTACAAGGATTTCAAAAATGTGAAAATCATTAAAAACGGGGCAAGAACGAACTT
325 GGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTT
213647500 ACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGG
390 ACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGG
213647565 GGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTAT
455 GGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTAT
*
213647630 CATACTATGGCAAAAATTAAAT
520 CATACTATGGCAAAAATTACAT
* ** *
213647652 TTTTGCCCCTAAATTTTATCTTATTTACACTTTTAAGC-AGGATTGT-AAATAATTTTCATTCAA
1 TTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAA
213647715 TTTATTTTCACCTTAAGCCTAG-CGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
66 TTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
213647779 ATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
131 ATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
* *
213647844 ATAACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACAATTAAACATCAAAATA
196 ATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATA
*
213647909 CACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAAGTCAAATAAATGGTAGAAATAG
261 CACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAG
* *
213647974 GTAGATCATGTTACAAGGATTTCAAGAATGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTA
326 GTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTA
*
213648039 CTATGGAGCTTGG-AAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCAAGGG
391 CTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGG
213648103 GTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATC
456 GTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATC
213648168 ATACTATGGCAAAAATTACAT
521 ATACTATGGCAAAAATTACAT
*
213648189 TTTTGCCCCTAAATTTTATCAT-TTTACACTTTTGACCCTAGGCTTTTAAAATAATTTTCATTCA
1 TTTTGCCCCTAAATTTTATCATATTTACACTTTT-ACCCTAGGCTTGTAAAATAATTTTCATTCA
*
213648253 ATTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
65 ATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTA
213648318 AATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAA
130 AATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAA
213648383 AATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAAT
195 AATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAAT
213648448 ACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATA
260 ACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATA
*
213648513 -GTAGATCATGTTACAAGGATTTCAAAAATGTGAAAATCATTAAAAACGGGGCAAGAACGGACTT
325 GGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTT
213648577 ACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGG
390 ACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGG
213648642 GGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTAT
455 GGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTAT
213648707 CATACTATGGCAAAAATTA-AT
520 CATACTATGGCAAAAATTACAT
213648728 TTTTGCCCCTAAATTTTATCATTATTTACACTTTTA----A-GCTTTGTAAAATAATTTTCATTC
1 TTTTGCCCCTAAATTTTATCA-TATTTACACTTTTACCCTAGGC-TTGTAAAATAATTTTCATTC
*
213648788 AATTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACT
64 AATTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACT
213648853 AAATCACACTTTTATGA-AAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGA
129 AAATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGA
213648917 AAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAA
194 AAATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAA
213648982 TACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAAT
259 TACACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAAT
213649047 AGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAAC-GACT
324 AGGTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACT
213649111 TACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAG
389 TACTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAG
213649176 GGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTA
454 GGGTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTA
213649241 TCATACTATGG-AAAAATTACAT
519 TCATACTATGGCAAAAATTACAT
213649263 TTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGT-AAATAATTTTCATTCAA
1 TTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAA
*
213649327 TTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
66 TTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
213649392 ATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
131 ATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
213649457 ATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATA
196 ATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATA
213649522 CACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAG
261 CACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAG
213649587 GTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTA
326 GTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTA
213649652 CTATGGAGCTTGGAAAGCTTAAACAAAA-CCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGG
391 CTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGG
213649716 GTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATC
456 GTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATC
213649781 ATACTATGGCAAAAATTACAT
521 ATACTATGGCAAAAATTACAT
213649802 TTTTGCCCCTAAATTTTATCAT-TTTACACTTTT-CCCTAGGCTT-TAAAATAATTTTCATTCAA
1 TTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAA
213649864 TTTATTTTCA-CTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
66 TTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
213649928 ATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
131 ATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
213649993 ATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATA
196 ATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATA
213650058 CACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAG
261 CACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAG
213650123 GTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAAC-GACTTA
326 GTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTA
213650187 CTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGA-GG
391 CTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGG
213650251 GTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATC
456 GTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATC
213650316 ATACTATGG-AAAAATTA-AT
521 ATACTATGGCAAAAATTACAT
213650335 TTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAA
1 TTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAA
*
213650400 TTTATTTTCACTTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
66 TTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
213650465 ATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
131 ATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
213650530 ATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATA
196 ATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATA
213650595 CACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAG
261 CACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAG
213650660 GTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTA
326 GTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTA
213650725 CTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCC-AGGG
391 CTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGG
*
213650789 GTTGAAGATGACCAAAATTTTGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATC
456 GTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATC
213650854 ATACTATGGCAAAAATTACAT
521 ATACTATGGCAAAAATTACAT
213650875 TTTTGCCCCTAAATTTTATC--ATTTACACTTTT-CCCTAGGCTT-T-AAA-AATTTTCATTCAA
1 TTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAA
*
213650934 TTTATTTTCACCTTAAGCCTAGCAGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
66 TTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
213650999 ATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
131 ATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
213651064 ATCACTTAGCAAAAGTTGTTTCTCCAACCAT-AA-ATGCATAATCTACCATTA
196 ATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTA
213651115 NNNNNNNNNN
Statistics
Matches: 3397, Mismatches: 35, Indels: 69
0.97 0.01 0.02
Matches are distributed among these distances:
532 18 0.01
533 26 0.01
534 213 0.06
535 471 0.14
536 565 0.17
537 756 0.22
538 700 0.21
539 237 0.07
540 400 0.12
541 11 0.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.34
Consensus pattern (541 bp):
TTTTGCCCCTAAATTTTATCATATTTACACTTTTACCCTAGGCTTGTAAAATAATTTTCATTCAA
TTTATTTTCACCTTAAGCCTAGCCGAACCACTTTCATAACTATAAAAACCCACAATTTCCACTAA
ATCACACTTTTATGACAAATTTTATAACTTTTACAAATTAGTCCTTTTTAGCATTTTCATTGAAA
ATCACTTAGCAAAAGTTGTTTCTCCAACCATAAACATGCATAATCTACCATTAAACATCAAAATA
CACAAATTTATAACATGGTTCAAACCCTAGACCTTCATCATAACTCAAATAAATGGTAGAAATAG
GTAGATCATGTTACAAGGATTTCAAAAACGTGAAAATCATTAAAAACGGGGCAAGAACGGACTTA
CTATGGAGCTTGGAAAGCTTAAACAAAACCCTAGCCATGGTGGTCTTCAAAATTTCGGCCGAGGG
GTTGAAGATGACCAAAATTTGGCTTTTATTTTGTTTATTTAAACATTTAATTACTAAATTTTATC
ATACTATGGCAAAAATTACAT
Found at i:213662104 original size:40 final size:40
Alignment explanation
Indices: 213661978--213662105 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
213661968 AAATTGAATG
* * * * * ***
213661978 ATATCCAGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTT
* *
213662018 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTT
* *
213662058 ACATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTGGTT
213662098 ATATCCGG
1 ATATCCGG
213662106 TTATATTCTG
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTT
Found at i:213672534 original size:39 final size:39
Alignment explanation
Indices: 213672491--213672689 Score: 303
Period size: 39 Copynumber: 5.2 Consensus size: 39
213672481 TATGGTAACC
* * *
213672491 CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
213672530 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
213672569 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
213672608 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
213672647 CGCAC--TTGCCTTCGGGCTTAGCCTGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
213672684 CGCACA
1 CGCACA
213672690 TTCATACACA
Statistics
Matches: 146, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
37 33 0.23
39 113 0.77
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:213672582 original size:78 final size:78
Alignment explanation
Indices: 213672491--213672689 Score: 339
Period size: 78 Copynumber: 2.6 Consensus size: 78
213672481 TATGGTAACC
* * *
213672491 CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
213672556 GGATATCATAGCT
66 GGATATCATAGCT
213672569 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
213672634 GGATATCATAGCT
66 GGATATCATAGCT
* *
213672647 CGCAC--TTGCCTTCGGGCTTAGCCTGGATATCACAATTCGCACA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
213672690 TTCATACACA
Statistics
Matches: 116, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
76 36 0.31
78 80 0.69
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (78 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGATATCATAGCT
Found at i:213675919 original size:22 final size:23
Alignment explanation
Indices: 213675892--213675936 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
213675882 GGGTATCTAC
213675892 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
213675914 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
213675937 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:213675941 original size:22 final size:22
Alignment explanation
Indices: 213675889--213675946 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
213675879 AAAGGGTATC
*
213675889 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
213675910 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
213675933 TACATATCATATCT
1 TACAAATCATATCT
213675947 AAGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:213675949 original size:19 final size:20
Alignment explanation
Indices: 213675902--213675959 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
213675892 AAATCAAATC
*
213675902 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
213675925 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
213675944 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
213675960 TTCGACGACC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:213682165 original size:39 final size:40
Alignment explanation
Indices: 213681987--213682169 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
213681977 CCGCACCAAG
* * * * * * * *
213681987 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
213682027 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
213682067 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
213682107 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
213682146 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
213682170 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:213690229 original size:39 final size:40
Alignment explanation
Indices: 213690051--213690233 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
213690041 CCGCACCAAG
* * * * * * * *
213690051 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
213690091 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
213690131 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
213690171 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
213690210 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
213690234 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:213694737 original size:40 final size:40
Alignment explanation
Indices: 213694575--213694776 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
213694565 CGAATGATGT
*
213694575 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
213694615 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
213694654 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
213694692 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
213694733 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
213694773 CCGG
1 CCGG
213694777 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:213694739 original size:78 final size:79
Alignment explanation
Indices: 213694574--213694725 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
213694564 TCGAATGATG
* * *
213694574 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
213694639 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
213694654 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
213694717 GTGCAAGTC
65 GTGCAAGTC
213694726 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:213697464 original size:25 final size:25
Alignment explanation
Indices: 213697430--213697496 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
213697420 AATCAAAATG
* *
213697430 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATTAGAATCAGAATCAAGTAAC
*
213697455 AGAATCAGAATCA-ATATCAAGTAAC
1 AGAATTAGAATCAGA-ATCAAGTAAC
213697480 AGAATTAGAATCAGAAT
1 AGAATTAGAATCAGAAT
213697497 GTGAATGCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 34 0.94
26 1 0.03
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (25 bp):
AGAATTAGAATCAGAATCAAGTAAC
Found at i:213697690 original size:26 final size:26
Alignment explanation
Indices: 213697613--213697692 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
213697603 CAGCAGGCTG
* * *
213697613 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
213697639 CCAGATACAGATATTGTAGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
213697666 CCAGAACAGATAATGTGGCAAAGCCA
1 CCAGAACAGATATTGTGGCAGAGCCA
213697692 C
1 C
213697693 TTAACAGAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
26 24 0.52
27 22 0.48
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:213698372 original size:27 final size:27
Alignment explanation
Indices: 213698342--213698862 Score: 558
Period size: 27 Copynumber: 19.3 Consensus size: 27
213698332 GGGGCAAAAT
* *
213698342 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
213698369 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
213698396 GGTAATTTTATCCTATAGGGGCATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * **
213698423 AGTAATTCTACTTTAC-AGGGATATTTC
1 GGTAATTTTACCCTACAAGGG-TATTTC
213698450 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
213698477 GGT-ATTTCTATCCTACAGGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
213698504 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
*
213698531 GGT-ATTTCTACCTTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
213698558 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
213698585 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
213698612 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
213698639 GGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
213698666 GGT-ATTTCTACCCTACAAGAGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
213698693 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
213698720 AGTAATTCTACTCTAC-AGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
213698746 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
213698773 GG-CATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
213698800 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
213698827 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
**
213698854 AATAATTTT
1 GGTAATTTT
213698863 GTAAATTGAG
Statistics
Matches: 426, Mismatches: 56, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
25 3 0.01
26 31 0.07
27 376 0.88
28 16 0.04
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:213698401 original size:54 final size:54
Alignment explanation
Indices: 213698342--213698853 Score: 622
Period size: 54 Copynumber: 9.5 Consensus size: 54
213698332 GGGGCAAAAT
* * *
213698342 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* * * * * * **
213698396 GGTAATTTTATCCTATAGGGGCATTTCAGTAATTCTACTTTAC-AGGGATATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGG-TATTTC
* * *
213698450 GGT-ATTTCTACCCTACAAGGGTATTTCGGTATTTCTATCCTACAGGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* * * *
213698504 AGTAATTCTACCCTACAAGGGTATTTTGGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* * *
213698558 GGT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* * * *
213698612 AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* *
213698666 GGT-ATTTCTACCCTACAAGAGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* * *
213698720 AGTAATTCTACTCTAC-AGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* *
213698773 GG-CATTTCTACCCTACAAGGGTATTTCGGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
* * *
213698827 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
213698854 AATAATTTTG
Statistics
Matches: 388, Mismatches: 59, Indels: 22
0.83 0.13 0.05
Matches are distributed among these distances:
52 3 0.01
53 57 0.15
54 313 0.81
55 15 0.04
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
Found at i:213698452 original size:81 final size:80
Alignment explanation
Indices: 213698343--213698853 Score: 657
Period size: 81 Copynumber: 6.3 Consensus size: 80
213698333 GGGCAAAATG
* * * *
213698343 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTT-TAT
1 GTAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGT-ATTTCTAC
* *
213698407 CCTATAGGGGCATTTCA
64 CCTACAGGGGTATTTCA
** * *
213698424 GTAATTCTACTTTACAGGGATATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTATC
1 GTAATTCTACCCTACAGGG-TATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACC
*
213698489 CTACAGGGGTATTTTA
65 CTACAGGGGTATTTCA
* * *
213698505 GTAATTCTACCCTACAAGGGTATTTTGGTATTTCTACCTTACAAGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACC
* *
213698570 CTACAAGGGTATTTCG
65 CTACAGGGGTATTTCA
* * *
213698586 GTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACA-GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACC
*
213698651 CTACAGGGGTATTTCG
65 CTACAGGGGTATTTCA
* * * * *
213698667 GTATTTCTACCCTACAAGAGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACT
1 GTAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACC
*
213698732 CTACA-GGGTATTTCG
65 CTACAGGGGTATTTCA
* * * *
213698747 GTATTTCTACCCTACAAGGGTATTTCGGCATTTCTACCCTACAAGGGTATTTCGGTATTTTTACC
1 GTAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACC
*
213698812 CTACAAGGGTATTTCA
65 CTACAGGGGTATTTCA
213698828 GTAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACA-GGGTATTTC
213698854 AATAATTTTG
Statistics
Matches: 382, Mismatches: 41, Indels: 14
0.87 0.09 0.03
Matches are distributed among these distances:
80 83 0.22
81 294 0.77
82 5 0.01
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (80 bp):
GTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCC
TACAGGGGTATTTCA
Found at i:213698902 original size:54 final size:54
Alignment explanation
Indices: 213698845--213699109 Score: 239
Period size: 54 Copynumber: 4.9 Consensus size: 54
213698835 TACCCTACAG
* *** * ** *
213698845 GGGTATTTCAATAATTTTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGG
1 GGGTATTTCAATAATTTTGCAAATTGAGGGTATTTCGGTAATTTTACAAATCGA
* * * * * *
213698899 GGGTACTTT-GATAATTTTACAAGTCGAGGGTATTTCAGCAATTTTACAAATCGA
1 GGGTA-TTTCAATAATTTTGCAAATTGAGGGTATTTCGGTAATTTTACAAATCGA
* *
213698953 AGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAATAATTTTGCAAATTGAGGGTATTTCGGTAATTTTACAAATCGA
* * ** * *
213699007 GGGTTTTTCAATAATTTTAC-AATAAATGATATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCAATAATTTTGCAAATTGAGGGTATTTCGGTAATTTTACAAATCGA
** * * * * *
213699060 GGGTATTTCGGTAATTTTAC-AATCGACGATATTTCAGTAATTTTACAAAT
1 GGGTATTTCAATAATTTTGCAAATTGAGGGTATTTCGGTAATTTTACAAAT
213699110 TAAGGATATT
Statistics
Matches: 172, Mismatches: 37, Indels: 5
0.80 0.17 0.02
Matches are distributed among these distances:
53 75 0.44
54 94 0.55
55 3 0.02
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (54 bp):
GGGTATTTCAATAATTTTGCAAATTGAGGGTATTTCGGTAATTTTACAAATCGA
Found at i:213698929 original size:27 final size:27
Alignment explanation
Indices: 213698892--213699109 Score: 205
Period size: 27 Copynumber: 8.1 Consensus size: 27
213698882 GTAATTCTGT
*
213698892 AAATCGGGGGTACTTT-GATAATTTTAC
1 AAATCGAGGGTA-TTTCGATAATTTTAC
* *
213698919 AAGTCGAGGGTATTTC-AGCAATTTTAC
1 AAATCGAGGGTATTTCGA-TAATTTTAC
* *
213698946 AAATCGAAGGTATTTC-AGTAATTTTGC
1 AAATCGAGGGTATTTCGA-TAATTTTAC
* *
213698973 AAATTGAGGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC
* *
213699000 AAATCGAGGGTTTTTCAATAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC
** * * *
213699027 -AATAAATGATATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC
*
213699053 AAATCGAGGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC
* *
213699080 -AATCGACGATATTTC-AGTAATTTTAC
1 AAATCGAGGGTATTTCGA-TAATTTTAC
213699106 AAAT
1 AAAT
213699110 TAAGGATATT
Statistics
Matches: 156, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
26 45 0.29
27 111 0.71
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
AAATCGAGGGTATTTCGATAATTTTAC
Found at i:213698930 original size:81 final size:81
Alignment explanation
Indices: 213698845--213699109 Score: 223
Period size: 81 Copynumber: 3.3 Consensus size: 81
213698835 TACCCTACAG
** * * * * *
213698845 GGGTATTTCAATAATTTTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGGGGGTACTTT-G
1 GGGTATTTCAATAATTTTACAAATCGAAGGTAAAACAGTAATTCTGCAAATCGAGGGTA-TTTCG
*
213698909 ATAATTTTACAAGTCGA
65 ATAATTTTACAAATCGA
** *** * * *
213698926 GGGTATTTCAGCAATTTTACAAATCGAAGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTCGG
1 GGGTATTTCAATAATTTTACAAATCGAAGGTAAAACAGTAATTCTGCAAATCGAGGGTATTTCGA
213698991 TAATTTTACAAATCGA
66 TAATTTTACAAATCGA
* * * *** * * *
213699007 GGGTTTTTCAATAATTTTAC-AAT-AAATGATATTTCGGTAATTTTACAAATCGAGGGTATTTCG
1 GGGTATTTCAATAATTTTACAAATCGAA-GGTAAAACAGTAATTCTGCAAATCGAGGGTATTTCG
*
213699070 GTAATTTTAC-AATCGA
65 ATAATTTTACAAATCGA
* * *
213699086 CGATATTTCAGTAATTTTACAAAT
1 GGGTATTTCAATAATTTTACAAAT
213699110 TAAGGATATT
Statistics
Matches: 153, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
79 24 0.16
80 51 0.33
81 78 0.51
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (81 bp):
GGGTATTTCAATAATTTTACAAATCGAAGGTAAAACAGTAATTCTGCAAATCGAGGGTATTTCGA
TAATTTTACAAATCGA
Found at i:213699060 original size:53 final size:53
Alignment explanation
Indices: 213698892--213699109 Score: 231
Period size: 53 Copynumber: 4.1 Consensus size: 53
213698882 GTAATTCTGT
* * * * * *
213698892 AAATCGGGGGTACTTTGA-TAATTTTACAAGTCGAGGGTATTTCAGCAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-TAGACGATATTTCAGTAATTTTAC
* * * * * *
213698946 AAATCGAAGGTATTTCAGTAATTTTGCAAATTGAGGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC-AATAGACGATATTTCAGTAATTTTAC
* * * * *
213699000 AAATCGAGGGTTTTTCAATAATTTTACAATAAATGATATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAATAGACGATATTTCAGTAATTTTAC
* *
213699053 AAATCGAGGGTATTTCGGTAATTTTACAATCGACGATATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAATAGACGATATTTCAGTAATTTTAC
213699106 AAAT
1 AAAT
213699110 TAAGGATATT
Statistics
Matches: 140, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
53 76 0.54
54 62 0.44
55 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (53 bp):
AAATCGAGGGTATTTCAGTAATTTTACAATAGACGATATTTCAGTAATTTTAC
Found at i:213699072 original size:80 final size:80
Alignment explanation
Indices: 213698892--213699182 Score: 313
Period size: 80 Copynumber: 3.6 Consensus size: 80
213698882 GTAATTCTGT
* * * * * *
213698892 AAATCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGCAATTTTACAAATCGAAGGT
1 AAATCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAAT-AAAGAT
* *
213698957 ATTTCAGTAATTTTGC
65 ATTTCGGTAATTTTAC
* * *
213698973 AAATTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGGTTTTTCAATAATTTTAC-AATAAATGA
1 AAATCGAGGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATAAA-GA
213699036 TATTTCGGTAATTTTAC
64 TATTTCGGTAATTTTAC
* * *
213699053 AAATCGAGGGTA-TTTCGGTAATTTTAC-AATCGACGATATTTCAGTAATTTTACAAATTAAGGA
1 AAATCGAGGGTACTTT-GGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAA-TAAAGA
* * *
213699116 TATTTGGGTAGTTTTAT
64 TATTTCGGTAATTTTAC
* * * *
213699133 AAACCGGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTCAGTAATTT
1 AAATCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
213699183 GGTAAACTAA
Statistics
Matches: 178, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
79 24 0.13
80 103 0.58
81 51 0.29
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.38
Consensus pattern (80 bp):
AAATCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATAAAGATA
TTTCGGTAATTTTAC
Found at i:213701177 original size:18 final size:18
Alignment explanation
Indices: 213701156--213701190 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
213701146 AAACATTATC
213701156 AGAACTAGAATCAAAATG
1 AGAACTAGAATCAAAATG
*
213701174 AGAATTAGAATCAAAAT
1 AGAACTAGAATCAAAAT
213701191 CAGGTGACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.09, G:0.14, T:0.20
Consensus pattern (18 bp):
AGAACTAGAATCAAAATG
Found at i:213701208 original size:25 final size:25
Alignment explanation
Indices: 213701174--213701236 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
213701164 AATCAAAATG
*
213701174 AGAATTAGAATCAAAATCAGGTGAC
1 AGAATTAGAATCAAAATCAGGTAAC
* *
213701199 AGAATCAGAATCAATATCAGGTAAC
1 AGAATTAGAATCAAAATCAGGTAAC
213701224 AGAATTAGAATCA
1 AGAATTAGAATCA
213701237 GAATGTGAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (25 bp):
AGAATTAGAATCAAAATCAGGTAAC
Found at i:213701624 original size:22 final size:22
Alignment explanation
Indices: 213701596--213701661 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
213701586 GCAAATACAT
*
213701596 TTGGCACACAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
* * *
213701618 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGA
*
213701640 TTGGCGCAAAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
213701662 AGGCTTTAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGA
Found at i:213702606 original size:27 final size:27
Alignment explanation
Indices: 213702088--213702599 Score: 684
Period size: 27 Copynumber: 19.0 Consensus size: 27
213702078 GGGGAAAAAT
213702088 GGTATTTCTA-CCTACAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
* *
213702114 GGTAATTCTACCCAACAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
* * * * *
213702141 AGCAATTCTACTCTACAGGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
213702168 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
213702195 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
* * *
213702222 GGTATTTCTATCCTATAGGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
* * *
213702249 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
213702276 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
213702303 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
213702330 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
* * * *
213702357 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTATTTCTACCCTACAAGGGTATTTC
* * *
213702384 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
**
213702411 GAAATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
* *
213702438 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
* * * * *
213702465 AGCAATTCTACTCTACAGGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
*
213702492 GGTATTTCTATCCTACAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
**
213702519 GACATTTCTACCCTACAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
* *
213702546 GGTATTTTTACCCTATAAGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
* * *
213702573 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTATTTCTACCCTACAAGGGTATTTC
213702600 AATAATTTTG
Statistics
Matches: 426, Mismatches: 59, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
26 9 0.02
27 417 0.98
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTATTTCTACCCTACAAGGGTATTTC
Found at i:213702621 original size:27 final size:27
Alignment explanation
Indices: 213702591--213702866 Score: 236
Period size: 27 Copynumber: 10.3 Consensus size: 27
213702581 TACCCTACAG
** *
213702591 GGGTATTTCAATAATTTTGTAAATTGA
1 GGGTATTTCAATAATTTTACAAATCGA
*** * * ** *
213702618 GGGTAAAACGATAATTCTGTAAATCGG
1 GGGTATTTCAATAATTTTACAAATCGA
* *
213702645 GGGTACTTT-GATAATTTTACAAGTCGA
1 GGGTA-TTTCAATAATTTTACAAATCGA
*
213702672 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAATAATTTTACAAATCGA
* **
213702699 GGGTATTTCAGTAATTTTGTAAA-CTGA
1 GGGTATTTCAATAATTTTACAAATC-GA
* *
213702726 GGGTATTTCGATAATTTTACAAATTGA
1 GGGTATTTCAATAATTTTACAAATCGA
* *
213702753 GGGTATTTCAGTAATTTTAC-AATCAA
1 GGGTATTTCAATAATTTTACAAATCGA
* * ***
213702779 TGATATTTTGGTAATTTTACAAATCGA
1 GGGTATTTCAATAATTTTACAAATCGA
*
213702806 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTCAATAATTTTACAAATCGA
* *
213702832 CGGTATTTCAATAATTTTACAAATCAA
1 GGGTATTTCAATAATTTTACAAATCGA
*
213702859 GGATATTT
1 GGGTATTT
213702867 GGGTAGTTTT
Statistics
Matches: 200, Mismatches: 43, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
26 48 0.24
27 152 0.76
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAATAATTTTACAAATCGA
Found at i:213702877 original size:53 final size:53
Alignment explanation
Indices: 213702638--213702866 Score: 271
Period size: 53 Copynumber: 4.3 Consensus size: 53
213702628 ATAATTCTGT
* * *
213702638 AAATCGGGGGTACTTTGA-TAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-TCGAGGGTATTTCAATAATTTTAC
** * *
213702692 AAATCGAGGGTATTTCAGTAATTTTGTAAACTGAGGGTATTTCGATAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAATC-GAGGGTATTTCAATAATTTTAC
* * * * ***
213702746 AAATTGAGGGTATTTCAGTAATTTTACAATCAATGATATTTTGGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCAATAATTTTAC
*
213702799 AAATCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCAATAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCAATAATTTTAC
* *
213702852 AAATCAAGGATATTT
1 AAATCGAGGGTATTT
213702867 GGGTAGTTTT
Statistics
Matches: 148, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
53 81 0.55
54 67 0.45
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (53 bp):
AAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCAATAATTTTAC
Found at i:213702890 original size:80 final size:81
Alignment explanation
Indices: 213702645--213702928 Score: 305
Period size: 80 Copynumber: 3.5 Consensus size: 81
213702635 TGTAAATCGG
* * * *
213702645 GGGTACTTTGA-TAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCA
1 GGGTACTTTCAGTAATTTTACAA-TCGAGGGTATTTCAGTAATTTTACAAATCAAGGATATTTCG
*
213702709 GTAATTTTGTAAACTGA
65 GTAATTTTATAAACTGA
* * *
213702726 GGGTA-TTTC-GATAATTTTACAAATTGAGGGTATTTCAGTAATTTTAC-AATCAATGATATTTT
1 GGGTACTTTCAG-TAATTTTAC-AATCGAGGGTATTTCAGTAATTTTACAAATCAAGGATATTTC
*
213702788 GGTAATTTTACAAA-TCGA
64 GGTAATTTTATAAACT-GA
* * *
213702806 GGGTA-TTTCAGTAATTTTACAATCGACGGTATTTCAATAATTTTACAAATCAAGGATATTTGGG
1 GGGTACTTTCAGTAATTTTACAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGATATTTCGG
* *
213702870 TAGTTTTATAAACTGG
66 TAATTTTATAAACTGA
* * * *
213702886 GGGTACTTT-GGTAATTTTATAAT-TAGGGGTATTTTAGTAATTT
1 GGGTACTTTCAGTAATTTTACAATCGA-GGGTATTTCAGTAATTT
213702929 GGTAAACTAA
Statistics
Matches: 171, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
79 25 0.15
80 102 0.60
81 42 0.25
82 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (81 bp):
GGGTACTTTCAGTAATTTTACAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGATATTTCGG
TAATTTTATAAACTGA
Found at i:213706163 original size:39 final size:40
Alignment explanation
Indices: 213706074--213706255 Score: 269
Period size: 39 Copynumber: 4.6 Consensus size: 40
213706064 AGTGGCTAAT
213706074 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
213706114 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-CTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
* * * *
213706153 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
* * * *
213706193 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
*
213706232 ACCGGGCTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
213706256 TGAGCTAGTG
Statistics
Matches: 132, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
39 71 0.54
40 61 0.46
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
Found at i:213706173 original size:79 final size:79
Alignment explanation
Indices: 213706074--213706255 Score: 267
Period size: 79 Copynumber: 2.3 Consensus size: 79
213706064 AGTGGCTAAT
213706074 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA-CCGGGCTAAGTCCCGAAGGCATTC
* *
213706139 GTGCGAGCT-CTATA
65 GTGCAAGCTACCATA
* * * * *
213706153 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTATACCGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATACCGGGCTAAGTCCCGAAGGCATTCG
*
213706218 TGCAAGTTACCATA
66 TGCAAGCTACCATA
*
213706232 ACCGGGCTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
213706256 TGAGCTAGTG
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 30 0.33
79 62 0.67
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATACCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACCATA
Found at i:213706279 original size:79 final size:78
Alignment explanation
Indices: 213706075--213706290 Score: 265
Period size: 79 Copynumber: 2.7 Consensus size: 78
213706065 GTGGCTAATT
*
213706075 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTCG
* * *
213706140 TGCGAGCTCTATAT
65 TGCAAGCTCCATAA
* * *
213706154 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTCG
*
213706218 TGCAAGTTACCATAA
65 TGCAAGCT-CCATAA
* * * **
213706233 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAAGTCCCGAAGG
213706291 TACTTGGTTT
Statistics
Matches: 118, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
78 31 0.26
79 85 0.72
80 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTCGT
GCAAGCTCCATAA
Found at i:213706290 original size:39 final size:39
Alignment explanation
Indices: 213706035--213706290 Score: 270
Period size: 40 Copynumber: 6.5 Consensus size: 39
213706025 CGGATGATAA
* * *
213706035 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTATA-T
*
213706075 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
213706115 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
213706154 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
213706193 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
213706233 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
**
213706273 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
213706291 TACTTGGTTT
Statistics
Matches: 191, Mismatches: 19, Indels: 13
0.86 0.09 0.06
Matches are distributed among these distances:
39 86 0.45
40 101 0.53
41 4 0.02
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:213710928 original size:40 final size:39
Alignment explanation
Indices: 213710763--213710946 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
213710753 AAATTGAATG
* * *
213710763 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
213710803 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
213710843 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
213710883 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
213710922 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
213710947 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:213710971 original size:80 final size:81
Alignment explanation
Indices: 213710803--213710991 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
213710793 GCTGGAAATT
* * * *
213710803 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
213710868 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
213710884 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
213710947 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
213710963 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
213710992 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:213719043 original size:40 final size:39
Alignment explanation
Indices: 213718878--213719061 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
213718868 AAATTGAATG
* * *
213718878 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
213718918 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
213718958 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
213718998 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
213719037 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
213719062 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:213719086 original size:80 final size:81
Alignment explanation
Indices: 213718918--213719106 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
213718908 GCTGGAAATT
* * * *
213718918 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
213718983 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
213718999 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
213719062 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
213719078 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
213719107 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:213728864 original size:138 final size:137
Alignment explanation
Indices: 213728611--213729303 Score: 1030
Period size: 138 Copynumber: 5.0 Consensus size: 137
213728601 ACATAGATAA
*
213728611 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* *
213728676 TAAATAGTTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTTTGGA
66 TAAATAGTTATATTAATTAATTTAG-TCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
*
213728741 AATAATAT
130 AAGAATAT
* *
213728749 AATTAATATATGAATTTGATTCGTACAAAATATTAATTGTATTTATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* * *
213728814 TAAAAAATTATATTAATTAATTTAAGTAAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
66 TAAATAGTTATATTAATTAATTT-AGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
*
213728879 AAGAATGT
130 AAGAATAT
* *
213728887 AATTAGTATATGAATTTGATTCATACAAAATATTAATTGTACATATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* * *
213728952 TAAATAGTTATATTAATTAATTTCGGTCAATATATAAAAGACATGAAAATTAATTTTCTTTTGGA
66 TAAATAGTTATATTAATTAATTT-AGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
*
213729017 ATGAATAT
130 AAGAATAT
* * * *
213729025 AATTAAGACATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
213729090 TAAATAGTTATATTAATTAATTTCAGTCAAAA-AGTAAAAGACATGAAAATTAATATTCTTTTGG
66 TAAATAGTTATATTAATTAATTT-AGTCAAAATA-TAAAAGACATGAAAATTAATATTCTTTTGG
*
213729154 AAAGAGTAT
129 AAAGAATAT
* * ** *
213729163 AATTAATATATGAATTTGATTCTTA-GAAATATTAATTAAATATATTTTACCGAAGTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* * * * * *
213729227 TAAACAATTATATTAAGTAATTTCGATCAAAATATAAATGATATGAAAATTAATATTCTTTTGGA
66 TAAATAGTTATATTAATTAATTTAG-TCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
213729292 AAGAATAT
130 AAGAATAT
213729300 AATT
1 AATT
213729304 CATTTTTCTA
Statistics
Matches: 501, Mismatches: 50, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
136 1 0.00
137 100 0.20
138 399 0.80
139 1 0.00
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (137 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
TAAATAGTTATATTAATTAATTTAGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAA
AGAATAT
Found at i:213729368 original size:75 final size:75
Alignment explanation
Indices: 213729279--213729426 Score: 226
Period size: 75 Copynumber: 2.0 Consensus size: 75
213729269 ATGAAAATTA
*
213729279 ATATTCTTTTGGAAAGAATATAATTCATTTTTCTAA-TTTTCCATTTGTCTTCTCTATTAATAAA
1 ATATTCTTTAGGAAAGAATATAATTCATTTTTCTAACTTTT-CATTTGTCTTCTCTATTAATAAA
*
213729343 GTAATAATCAT
65 GGAATAATCAT
* * * *
213729354 ATATTCTTTAGGAAAGAGTATAATTCATTTTTCTAACTTTTCATTTGTTTTTTCTATTAATAAGG
1 ATATTCTTTAGGAAAGAATATAATTCATTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAAG
213729419 GAATAATC
66 GAATAATC
213729427 CTGGTTTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
75 62 0.94
76 4 0.06
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (75 bp):
ATATTCTTTAGGAAAGAATATAATTCATTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAAG
GAATAATCAT
Found at i:213735621 original size:29 final size:29
Alignment explanation
Indices: 213735558--213735661 Score: 120
Period size: 29 Copynumber: 3.6 Consensus size: 29
213735548 CGGTGACGAG
* * *
213735558 ATGGCACTGAGTGTGCGAGCTTGTAATGT
1 ATGGCACTAAGTGTGCGAGCTTGGAATAT
* * *
213735587 ACGGCACTAAGTGTGCGAGTTTGGACTAT
1 ATGGCACTAAGTGTGCGAGCTTGGAATAT
* *
213735616 ATGGCACTATGTGTGCGGGCTT-GAATCAT
1 ATGGCACTAAGTGTGCGAGCTTGGAAT-AT
213735645 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
213735662 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 59 0.95
ACGTcount: A:0.22, C:0.16, G:0.33, T:0.29
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTTGGAATAT
Found at i:213739195 original size:40 final size:39
Alignment explanation
Indices: 213739138--213739322 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
213739128 ATTAAATGAT
* * *
213739138 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
213739178 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
213739218 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
213739258 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
213739298 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
213739323 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:213739274 original size:80 final size:80
Alignment explanation
Indices: 213739137--213739343 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
213739127 AATTAAATGA
* * ** * *
213739137 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
213739202 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
213739215 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
213739280 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
213739297 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
213739344 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:213739328 original size:40 final size:39
Alignment explanation
Indices: 213739136--213739343 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
213739126 CAATTAAATG
* * ** *
213739136 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
213739176 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
213739216 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
213739256 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
213739296 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
213739336 ATATCCGG
1 ATATCCGG
213739344 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:213747173 original size:40 final size:39
Alignment explanation
Indices: 213747116--213747300 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
213747106 ATTAAATGAT
* * *
213747116 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
213747156 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
213747196 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
213747236 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
213747276 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
213747301 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:213747252 original size:80 final size:80
Alignment explanation
Indices: 213747115--213747321 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
213747105 AATTAAATGA
* * ** * *
213747115 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
213747180 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
213747193 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
213747258 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
213747275 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
213747322 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:213747306 original size:40 final size:39
Alignment explanation
Indices: 213747114--213747321 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
213747104 CAATTAAATG
* * ** *
213747114 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
213747154 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
213747194 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
213747234 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
213747274 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
213747314 ATATCCGG
1 ATATCCGG
213747322 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:213755136 original size:40 final size:39
Alignment explanation
Indices: 213755079--213755263 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
213755069 ATTAAATGAT
* * *
213755079 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
213755119 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
213755159 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
213755199 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
213755239 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
213755264 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:213755215 original size:80 final size:80
Alignment explanation
Indices: 213755078--213755284 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
213755068 AATTAAATGA
* * ** * *
213755078 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
213755143 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
213755156 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
213755221 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
213755238 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
213755285 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:213755269 original size:40 final size:39
Alignment explanation
Indices: 213755077--213755284 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
213755067 CAATTAAATG
* * ** *
213755077 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
213755117 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
213755157 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
213755197 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
213755237 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
213755277 ATATCCGG
1 ATATCCGG
213755285 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:213763093 original size:40 final size:39
Alignment explanation
Indices: 213763036--213763220 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
213763026 ATTAAATGAT
* * *
213763036 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
213763076 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
213763116 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
213763156 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
213763196 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
213763221 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:213763172 original size:80 final size:80
Alignment explanation
Indices: 213763035--213763241 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
213763025 AATTAAATGA
* * ** * *
213763035 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
213763100 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
213763113 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
213763178 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
213763195 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
213763242 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:213763226 original size:40 final size:39
Alignment explanation
Indices: 213763034--213763241 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
213763024 CAATTAAATG
* * ** *
213763034 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
213763074 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
213763114 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
213763154 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
213763194 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
213763234 ATATCCGG
1 ATATCCGG
213763242 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:213769675 original size:79 final size:81
Alignment explanation
Indices: 213769536--213769727 Score: 205
Period size: 79 Copynumber: 2.4 Consensus size: 81
213769526 TTGAATGATG
** * * *
213769536 TCCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG-CGAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
213769600 CGTGCGAATTAATA-AA
65 CGTGCGAATTAATATAA
* **
213769616 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
* *
213769679 CGTGCGAGTTACTATAA
65 CGTGCGAATTAATATAA
** * *
213769696 -CCGGGCTTTGTCCTGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
213769728 CGTTATATCT
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.59
80 38 0.40
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAATTAATATAA
Found at i:213769726 original size:40 final size:40
Alignment explanation
Indices: 213769537--213769727 Score: 149
Period size: 40 Copynumber: 4.8 Consensus size: 40
213769527 TGAATGATGT
* ** * * *
213769537 CCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTG-CGAGTTACTAAAC
** * * * * *
213769577 CCGGACTAAGAT-CCGAAGGCGTTCGTGCGAATTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAC
*
213769617 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
*
213769656 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAC
* * *
213769696 CCGGGCTT-TGTCCTGAAGGCATTTGAGCGAGT
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGT
213769728 CGTTATATCT
Statistics
Matches: 125, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 32 0.26
40 83 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAC
Found at i:213773546 original size:24 final size:24
Alignment explanation
Indices: 213773500--213773546 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
213773490 GATAATATGA
* * * *
213773500 AAAATGACTATTTTTCCCTTAGGT
1 AAAATGACCATTATACCCCTAGGT
213773524 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
213773547 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:213773609 original size:11 final size:10
Alignment explanation
Indices: 213773577--213773632 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 10
213773567 CATGAGATTT
213773577 TGATAT-ACA
1 TGATATGACA
*
213773586 TGATTTGACA
1 TGATATGACA
213773596 TGATATGCACA
1 TGATATG-ACA
*
213773607 TGATATG-TA
1 TGATATGACA
*
213773616 TGAAATGCACA
1 TGATATG-ACA
213773627 TGATAT
1 TGATAT
213773633 ATTCATATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 12 0.32
10 9 0.24
11 16 0.43
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.34
Consensus pattern (10 bp):
TGATATGACA
Found at i:213773623 original size:20 final size:20
Alignment explanation
Indices: 213773595--213773632 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
213773585 ATGATTTGAC
*
213773595 ATGATATGCACATGATATGT
1 ATGAAATGCACATGATATGT
213773615 ATGAAATGCACATGATAT
1 ATGAAATGCACATGATAT
213773633 ATTCATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
ATGAAATGCACATGATATGT
Found at i:213773735 original size:24 final size:25
Alignment explanation
Indices: 213773678--213773745 Score: 129
Period size: 25 Copynumber: 2.8 Consensus size: 25
213773668 GAGGAAGTGA
213773678 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
213773703 AAAAGGGCTTTGCCCCAGTTTACC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
213773727 AAAAGGGCTTTGCCCCAGT
1 AAAAGGGCTTTGCCCCAGT
213773746 AATTAAAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
24 19 0.44
25 24 0.56
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:213783622 original size:47 final size:45
Alignment explanation
Indices: 213783549--213783675 Score: 143
Period size: 47 Copynumber: 2.7 Consensus size: 45
213783539 TCACTTGTGT
*
213783549 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATT-ATGA-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAG--ACATTGA-GAC
* *
213783595 GAGCCAGTGTAAGACCATGTTTGGGACATGGCAT-TGACATTGAGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGACATTGAGAC
213783641 GAGCGCTAGTGTAAGACATGTCTGGGACATGCATC
1 GAGC-C-AGTGTAAGACATGTCTGGGACATGCATC
213783676 GGCTATGAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
45 7 0.10
46 22 0.31
47 28 0.40
48 13 0.19
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGACATTGAGAC
Found at i:213786224 original size:40 final size:40
Alignment explanation
Indices: 213786087--213786225 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 40
213786077 GGACTAAGAT
* * * * * *
213786087 CCGAAGGCGTTCGTGCGAATTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
213786126 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
213786166 CCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGCTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AACCCGGG-TTAAGTC
* *
213786206 CTGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTTGTGCGAGT
213786226 CGTTATATCT
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.37
40 50 0.58
41 4 0.05
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:213796407 original size:115 final size:115
Alignment explanation
Indices: 213796226--213796436 Score: 359
Period size: 115 Copynumber: 1.8 Consensus size: 115
213796216 CTGTAATGTG
* *
213796226 TTTTATTTTATTTTTCTGATTGTTTGTTTCCCTTTGTATTTAACGACATTTTCTTGTAAATATTT
1 TTTTATTTTATTTTTCTGATTGTTAGTTTCCCTTTGTATTTAACGACATTTTCTTGCAAATATTT
*
213796291 GAATAATTGAATCCCATTAATTAGATTTATATTGCCTGTTATGTGTTTTA
66 GAATAATTGAATCCCATTAATGAGATTTATATTGCCTGTTATGTGTTTTA
* *
213796341 TTTTATTTTATTTTTTTGATTGTTAGTTTCCCTTTGTATTTAACGACATTTTCTTGCAAATCTTT
1 TTTTATTTTATTTTTCTGATTGTTAGTTTCCCTTTGTATTTAACGACATTTTCTTGCAAATATTT
* *
213796406 GAATGATTGAATCCCATTAATGAGGTTTATA
66 GAATAATTGAATCCCATTAATGAGATTTATA
213796437 GCGAAGATAT
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
115 89 1.00
ACGTcount: A:0.24, C:0.11, G:0.12, T:0.54
Consensus pattern (115 bp):
TTTTATTTTATTTTTCTGATTGTTAGTTTCCCTTTGTATTTAACGACATTTTCTTGCAAATATTT
GAATAATTGAATCCCATTAATGAGATTTATATTGCCTGTTATGTGTTTTA
Found at i:213796580 original size:42 final size:42
Alignment explanation
Indices: 213796534--213796628 Score: 118
Period size: 42 Copynumber: 2.3 Consensus size: 42
213796524 GTAAATACCG
* * *
213796534 CTCATATCCCAACTTGGAATAATCTATTCCAGGGTTATCCCT
1 CTCATATCCCAACTTAGAATAATCAATTCCAGGGATATCCCT
* ** *
213796576 CTCATTTCCCCTCTTAGAATAATCAATTCCGGGGATATCCCT
1 CTCATATCCCAACTTAGAATAATCAATTCCAGGGATATCCCT
*
213796618 CTGATATCCCA
1 CTCATATCCCA
213796629 TCCCGGTTCG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.25, C:0.31, G:0.12, T:0.33
Consensus pattern (42 bp):
CTCATATCCCAACTTAGAATAATCAATTCCAGGGATATCCCT
Found at i:213796768 original size:16 final size:16
Alignment explanation
Indices: 213796749--213796802 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
213796739 CATTCCGAGG
213796749 ATATCCCGGCTTAGGT
1 ATATCCCGGCTTAGGT
**
213796765 ATATCCCGAATTAGG-
1 ATATCCCGGCTTAGGT
*
213796780 ATAGCCCGGCTTAGGT
1 ATATCCCGGCTTAGGT
213796796 ATATCCC
1 ATATCCC
213796803 ACTTGCGGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
15 12 0.39
16 19 0.61
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (16 bp):
ATATCCCGGCTTAGGT
Found at i:213796813 original size:31 final size:31
Alignment explanation
Indices: 213796746--213796828 Score: 105
Period size: 31 Copynumber: 2.7 Consensus size: 31
213796736 TCCCATTCCG
213796746 AGGATATCCCGGCTTAGGTATATCCCGAATT
1 AGGATATCCCGGCTTAGGTATATCCCGAATT
* *
213796777 AGGATAGCCCGGCTTAGGTATATCCC-ACTT
1 AGGATATCCCGGCTTAGGTATATCCCGAATT
* * *
213796807 GCGGATATCCCGGTTTCGGTAT
1 -AGGATATCCCGGCTTAGGTAT
213796829 TAATTACCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 3 0.07
31 42 0.93
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (31 bp):
AGGATATCCCGGCTTAGGTATATCCCGAATT
Found at i:213804226 original size:16 final size:16
Alignment explanation
Indices: 213804205--213804239 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
213804195 GTAAGTACTG
213804205 TGTTATTGGGTTAGCT
1 TGTTATTGGGTTAGCT
*
213804221 TGTTATTGGGTTGGCT
1 TGTTATTGGGTTAGCT
213804237 TGT
1 TGT
213804240 GTCGGAGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.51
Consensus pattern (16 bp):
TGTTATTGGGTTAGCT
Found at i:213804338 original size:19 final size:21
Alignment explanation
Indices: 213804314--213804360 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
213804304 ATCCCGTTCA
**
213804314 GGTTCAG-T-ATTTGGTGCCC
1 GGTTCAGCTGATTTGGTAACC
213804333 GGTTCAGCTGATTTGGTAACC
1 GGTTCAGCTGATTTGGTAACC
213804354 GGTTCAG
1 GGTTCAG
213804361 AGTTTTTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.29
20 1 0.04
21 16 0.67
ACGTcount: A:0.15, C:0.19, G:0.32, T:0.34
Consensus pattern (21 bp):
GGTTCAGCTGATTTGGTAACC
Found at i:213808611 original size:78 final size:78
Alignment explanation
Indices: 213808465--213808613 Score: 228
Period size: 78 Copynumber: 1.9 Consensus size: 78
213808455 CTCATATTCT
* * *
213808465 ACCATTAAACCATGATCCCTTGATCTCACCAGCTGGGAGAGTCGGTGATCATGTTGATAATGATC
1 ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGACC
213808530 ACCATGGAGTTCG
66 ACCATGGAGTTCG
* * *
213808543 ACCATTAAACCCTGATCCCTTGATCTCATCC-GCTAGGAGAGTTGGTGATCATGTTGATAGCGAC
1 ACCATTAAACCATGATCCCTTGATCTCA-CCAGCTAGGAGAGTCGGTGATCATGTTGATAACGAC
213808607 CACCATG
65 CACCATG
213808614 ACGTTGTGCA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
78 62 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (78 bp):
ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGACC
ACCATGGAGTTCG
Found at i:213809435 original size:72 final size:72
Alignment explanation
Indices: 213809339--213809484 Score: 292
Period size: 72 Copynumber: 2.0 Consensus size: 72
213809329 ACTTGAACAC
213809339 TTGTCTGTTTTCATTTAATCTACAGTAAATATATATTTAAGGCCACTTTCCTTATACAATTGCTG
1 TTGTCTGTTTTCATTTAATCTACAGTAAATATATATTTAAGGCCACTTTCCTTATACAATTGCTG
213809404 TTTGATT
66 TTTGATT
213809411 TTGTCTGTTTTCATTTAATCTACAGTAAATATATATTTAAGGCCACTTTCCTTATACAATTGCTG
1 TTGTCTGTTTTCATTTAATCTACAGTAAATATATATTTAAGGCCACTTTCCTTATACAATTGCTG
213809476 TTTGATT
66 TTTGATT
213809483 TT
1 TT
213809485 CTTTTTTCAA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (72 bp):
TTGTCTGTTTTCATTTAATCTACAGTAAATATATATTTAAGGCCACTTTCCTTATACAATTGCTG
TTTGATT
Found at i:213823192 original size:13 final size:13
Alignment explanation
Indices: 213823174--213823202 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
213823164 TCTTGTGTTC
213823174 GAGCTTTGGTAGT
1 GAGCTTTGGTAGT
213823187 GAGCTTTGGTAGT
1 GAGCTTTGGTAGT
213823200 GAG
1 GAG
213823203 AATGAAGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.07, G:0.41, T:0.34
Consensus pattern (13 bp):
GAGCTTTGGTAGT
Found at i:213823305 original size:40 final size:40
Alignment explanation
Indices: 213823260--213823439 Score: 265
Period size: 40 Copynumber: 4.5 Consensus size: 40
213823250 TTCGAATGAT
213823260 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
213823300 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
213823340 ATCCGGGTTAATTGCCGAAGGCAATTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
213823380 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
213823421 A-CCGGGCT-ATGTCCCGAAG
1 ATCCGGGTTAAT-TCCCGAAG
213823440 ACAATCGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:213831074 original size:40 final size:40
Alignment explanation
Indices: 213831029--213831155 Score: 193
Period size: 40 Copynumber: 3.2 Consensus size: 40
213831019 TTCGAATGAT
213831029 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
213831069 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
213831109 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
213831150 A-CCGGG
1 ATCCGGG
213831156 CTATGTCCGA
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 77 0.97
41 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:213834870 original size:15 final size:15
Alignment explanation
Indices: 213834846--213834875 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
213834836 GTTCTTGATC
213834846 TAAACATATTCAAAT
1 TAAACATATTCAAAT
*
213834861 TAAACTTATTCAAAT
1 TAAACATATTCAAAT
213834876 ATATTTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAACATATTCAAAT
Found at i:213839918 original size:80 final size:81
Alignment explanation
Indices: 213839810--213839975 Score: 244
Period size: 80 Copynumber: 2.1 Consensus size: 81
213839800 TCGGACATAG
* * *
213839810 CCCGGTTATAGTAATTCGCACAATTGCCTTCGGGAATTAACCCGGATTTAGTAAC-TCGCACAAA
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTTAGCACAAA
*
213839874 TGCCTTCGGGACTTAA
66 AGCCTTCGGGACTTAA
* * * *
213839890 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAA
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTTAGCACAAA
*
213839955 AGCCTTCGGGACTTAG
66 AGCCTTCGGGACTTAA
213839971 CCCGG
1 CCCGG
213839976 ACATCATTCG
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
80 49 0.64
81 27 0.36
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTTAGCACAAA
AGCCTTCGGGACTTAA
Found at i:213839964 original size:41 final size:40
Alignment explanation
Indices: 213839810--213839976 Score: 210
Period size: 40 Copynumber: 4.2 Consensus size: 40
213839800 TCGGACATAG
* *
213839810 CCCGG-TTATAGTAATTCGCACAATTGCCTTCGGGAATTAA
1 CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGAATTAA
*
213839850 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
* * *
213839890 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGA
1 CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
* * * * *
213839930 CCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAG
1 CCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGAATTAA
213839971 CCCGGA
1 CCCGGA
213839977 CATCATTCGA
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
40 82 0.75
41 28 0.25
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
Done.