Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 682 of 770
Found at i:214874872 original size:40 final size:40
Alignment explanation
Indices: 214874817--214875026 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
214874807 AACATTGGAA
214874817 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
214874857 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
214874897 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
214874937 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
214874976 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
214875017 CTATATCCGG
1 ATATATCCGG
214875027 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:214879321 original size:19 final size:17
Alignment explanation
Indices: 214879250--214879320 Score: 74
Period size: 15 Copynumber: 4.1 Consensus size: 17
214879240 AATTTTTATT
*
214879250 AATAAAATAATAAAT-A
1 AATAAAATAAAAAATAA
* *
214879266 AAT-GAATAATAAATAA
1 AATAAAATAAAAAATAA
214879282 AATAAAATAAAATAATGAA
1 AATAAAATAAAA-AAT-AA
214879301 AATGAAAATAAAAAATAA
1 AAT-AAAATAAAAAATAA
214879319 AA
1 AA
214879321 AATTAAAATT
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
15 10 0.21
16 7 0.15
17 6 0.13
18 7 0.15
19 8 0.17
20 9 0.19
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (17 bp):
AATAAAATAAAAAATAA
Found at i:214879323 original size:20 final size:20
Alignment explanation
Indices: 214879250--214879321 Score: 66
Period size: 19 Copynumber: 3.8 Consensus size: 20
214879240 AATTTTTATT
214879250 AATAAAATAATAAATAAATG--
1 AATAAAATAAT-AA-AAATGAA
*
214879270 AATAATA-AAT-AAAAT-AA
1 AATAAAATAATAAAAATGAA
*
214879287 AATAAAATAATGAAAATGAA
1 AATAAAATAATAAAAATGAA
214879307 AATAAAA-AATAAAAA
1 AATAAAATAATAAAAA
214879322 ATTAAAATTG
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
16 4 0.09
17 7 0.16
18 3 0.07
19 15 0.34
20 15 0.34
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (20 bp):
AATAAAATAATAAAAATGAA
Found at i:214880755 original size:2 final size:2
Alignment explanation
Indices: 214880748--214880773 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
214880738 GATAGGAAAA
214880748 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
214880774 TTTAAAAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:214881582 original size:5 final size:5
Alignment explanation
Indices: 214881564--214881600 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
214881554 GGATCCAGTT
214881564 TTTTC TTCTTC TTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC T
214881601 CTTCATCTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:214881592 original size:15 final size:16
Alignment explanation
Indices: 214881564--214881627 Score: 69
Period size: 15 Copynumber: 4.0 Consensus size: 16
214881554 GGATCCAGTT
214881564 TTTTCTTCTTCTTTTC
1 TTTTCTTCTTCTTTTC
214881580 TTTTCTT-TTCTTTTC
1 TTTTCTTCTTCTTTTC
* *
214881595 TTTTC-TCTTCATCTAC
1 TTTTCTTCTTC-TTTTC
*
214881611 TTTCCCTTCTTCTTTTC
1 TTT-TCTTCTTCTTTTC
214881628 CCCATAGCCG
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
14 1 0.03
15 16 0.41
16 13 0.33
17 4 0.10
18 5 0.13
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTCTTCTTCTTTTC
Found at i:214887884 original size:37 final size:37
Alignment explanation
Indices: 214887834--214887911 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
214887824 TATAAAAGAA
214887834 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
214887871 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
214887908 GTCT
1 GTCT
214887912 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:214888074 original size:49 final size:49
Alignment explanation
Indices: 214888014--214888383 Score: 650
Period size: 49 Copynumber: 7.5 Consensus size: 49
214888004 CATATATTTT
* *
214888014 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
*
214888063 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCATC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
* *
214888112 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
214888161 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
214888210 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
*
214888259 ACATCAGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
*
214888308 ACATCGGCCATTAGGCCTTATCACATATACACATACACTTTCACATTCATC
1 ACATCGGCCATTAGGCCTCATCACATAT--ACATACACTTTCACATTCATC
*
214888359 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
214888384 CATATATGTA
Statistics
Matches: 308, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
49 262 0.85
51 46 0.15
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.28
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCATC
Found at i:214888208 original size:27 final size:27
Alignment explanation
Indices: 214888178--214888311 Score: 81
Period size: 27 Copynumber: 5.3 Consensus size: 27
214888168 CCATTAGGCC
214888178 TCATCACATATACATACACTTTCACAT
1 TCATCACATATACATACACTTTCACAT
*** *** *
214888205 TCATCAC--AT-CGGCCA-TTAGGCCT
1 TCATCACATATACATACACTTTCACAT
214888228 -CATCACATATACATACACTTTCACAT
1 TCATCACATATACATACACTTTCACAT
** *** *
214888254 TCATCAC--AT-CAGCCA-TTAGGC-C
1 TCATCACATATACATACACTTTCACAT
214888276 TCATCACATATACATACACTTTCACAT
1 TCATCACATATACATACACTTTCACAT
214888303 TCATCACAT
1 TCATCACAT
214888312 CGGCCATTAG
Statistics
Matches: 71, Mismatches: 26, Indels: 20
0.61 0.22 0.17
Matches are distributed among these distances:
22 13 0.18
23 7 0.10
24 11 0.15
25 11 0.15
26 7 0.10
27 22 0.31
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (27 bp):
TCATCACATATACATACACTTTCACAT
Found at i:214891371 original size:29 final size:29
Alignment explanation
Indices: 214891281--214891469 Score: 238
Period size: 29 Copynumber: 6.5 Consensus size: 29
214891271 ACTCGATTTC
* * **
214891281 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
214891310 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
214891338 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
214891368 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
214891397 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
214891426 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
214891455 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
214891470 ATCTCGTCAC
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
28 2 0.01
29 137 0.98
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:214900422 original size:40 final size:40
Alignment explanation
Indices: 214900373--214900673 Score: 308
Period size: 40 Copynumber: 7.5 Consensus size: 40
214900363 CCAGCATGAT
* *
214900373 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
214900413 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
214900453 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
214900493 TGCTCTTCGGAACTTAGTCCGGATAGATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * *
214900533 TGCTCTTCGAAACTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCACTAGCACGAA
** * * * * *
214900572 TTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAA
1 -TGCTCTTCGGAACTTAGCCCGGATACATC-ACT-AGCACGAA
** * **
214900613 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAA
*
214900653 TGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGAACTTAGCCCGG
214900674 GTATCATTCA
Statistics
Matches: 228, Mismatches: 25, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
39 21 0.09
40 203 0.89
41 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:214902629 original size:37 final size:37
Alignment explanation
Indices: 214902579--214902656 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
214902569 TTATTACGAA
214902579 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
214902616 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
214902653 GTCT
1 GTCT
214902657 CACCGGAACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:214902668 original size:37 final size:37
Alignment explanation
Indices: 214902579--214902668 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
214902569 TTATTACGAA
*
214902579 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
*
214902616 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
214902653 GTCTCA-CCGGAACATA
1 GTCTCACCCGG-ACATA
214902669 TTTCCAAGTT
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
36 4 0.08
37 47 0.92
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:214902762 original size:47 final size:47
Alignment explanation
Indices: 214902707--214902905 Score: 328
Period size: 47 Copynumber: 4.2 Consensus size: 47
214902697 ATGTTACAAC
*
214902707 ATTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATAT
1 ATTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATAT
*
214902754 ATTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
1 ATTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATAT
214902801 ATTTCACATTAGCC-TTCGGCTTTACCACATATACACATCACACATAT
1 A-TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATAT
*
214902848 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
1 A-TTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATAT
*
214902896 GTTTCACATT
1 -ATTCACATT
214902906 CACCATCGGC
Statistics
Matches: 144, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
47 92 0.64
48 52 0.36
ACGTcount: A:0.33, C:0.29, G:0.07, T:0.32
Consensus pattern (47 bp):
ATTCACATTAGCCATTCGGCTTTACCACATATACACATCACACATAT
Found at i:214902811 original size:95 final size:95
Alignment explanation
Indices: 214902708--214902905 Score: 362
Period size: 95 Copynumber: 2.1 Consensus size: 95
214902698 TGTTACAACA
214902708 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATA-TTCACATTAGCCATTCG
1 TTCACATTAGCC-TTCGGCTTTACCACACATACACATCACACATATATTTCACATTAGCCATTCG
214902772 GCTTTACCACATATACATATCACACATATAT
65 GCTTTACCACATATACATATCACACATATAT
*
214902803 TTCACATTAGCCTTCGGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGG
1 TTCACATTAGCCTTCGGCTTTACCACACATACACATCACACATATATTTCACATTAGCCATTCGG
*
214902868 CTTTACCACATATACATATCACACATATGT
66 CTTTACCACATATACATATCACACATATAT
214902898 TTCACATT
1 TTCACATT
214902906 CACCATCGGC
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
94 33 0.33
95 67 0.67
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (95 bp):
TTCACATTAGCCTTCGGCTTTACCACACATACACATCACACATATATTTCACATTAGCCATTCGG
CTTTACCACATATACATATCACACATATAT
Found at i:214902962 original size:49 final size:46
Alignment explanation
Indices: 214902898--214903053 Score: 235
Period size: 47 Copynumber: 3.3 Consensus size: 46
214902888 ACACATATGT
214902898 TTCACATTCA-C-CATCGGCCATTAGGCCTTATCACATATATATACACC
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC-CC
*
214902945 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC-CC
* *
214902992 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACTC
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACCC
214903038 TTCACATTCATCACAT
1 TTCACATTCATCACAT
214903054 TCCATTACTT
Statistics
Matches: 102, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
46 16 0.16
47 62 0.61
48 1 0.01
49 23 0.23
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (46 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACCC
Found at i:214903076 original size:110 final size:113
Alignment explanation
Indices: 214902954--214903169 Score: 375
Period size: 112 Copynumber: 1.9 Consensus size: 113
214902944 CTTCACATTC
214902954 ATCACATCGGCCATTAGGCCTTATCACA-TATATACTCTTTCACATTCATCACATTGGCCATTAG
1 ATCACATCGGCCATTAGGCCTTATCACAGTATATACTCTTTCACATTCATCACATTGGCCATTAG
*
214903018 GCCTTATCACA-TATATACTC-TTCACATTCATCACATTCCATTACTT
66 GCCTTATCACAGTATATACACTTTCACATTCATCACATTCCATTACTT
*
214903064 ATCACATTGGCCATTAGGCCTTATCACATGTATATACTCTTTCACATTCATCACATTGGCCATTA
1 ATCACATCGGCCATTAGGCCTTATCACA-GTATATACTCTTTCACATTCATCACATTGGCCATTA
214903129 GGCCTTATCACATGTATATACACTTTCACATTCATCACATT
65 GGCCTTATCACA-GTATATACACTTTCACATTCATCACATT
214903170 GGCCATTAGG
Statistics
Matches: 99, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
110 27 0.27
112 47 0.47
114 8 0.08
115 17 0.17
ACGTcount: A:0.28, C:0.28, G:0.08, T:0.36
Consensus pattern (113 bp):
ATCACATCGGCCATTAGGCCTTATCACAGTATATACTCTTTCACATTCATCACATTGGCCATTAG
GCCTTATCACAGTATATACACTTTCACATTCATCACATTCCATTACTT
Found at i:214903099 original size:159 final size:162
Alignment explanation
Indices: 214902913--214903217 Score: 517
Period size: 159 Copynumber: 1.9 Consensus size: 162
214902903 ATTCACCATC
214902913 GGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 GGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
214902978 CACA-TATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC-ATATATAC-TCTT
66 CACAGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACAATATATACACCTT
214903040 CACATTCATCACATTCCATTACTTATCACATT
131 CACATTCATCACATTCCATTACTTATCACATT
* * * *
214903072 GGCCATTAGGCCTTATCACATGTATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTAT
1 GGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTAT
214903137 CACATGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACC
66 CACA-GTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACA-ATATATACACC
214903202 TTCACATTCATCACAT
129 TTCACATTCATCACAT
214903218 CGGCCATTAG
Statistics
Matches: 135, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
159 65 0.48
161 45 0.33
163 8 0.06
164 17 0.13
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (162 bp):
GGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACAGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACAATATATACACCTT
CACATTCATCACATTCCATTACTTATCACATT
Found at i:214903120 original size:49 final size:48
Alignment explanation
Indices: 214903064--214903339 Score: 468
Period size: 49 Copynumber: 5.8 Consensus size: 48
214903054 TCCATTACTT
214903064 ATCACATTGGCCATTAGGCCTTATCACATGTATATACTCTTTCACATTC
1 ATCACATTGGCCATTAGGCCTTATCACAT-TATATACTCTTTCACATTC
*
214903113 ATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTC
1 ATCACATTGGCCATTAGGCCTTATCACAT-TATATACTCTTTCACATTC
* *
214903162 ATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTC
1 ATCACATTGGCCATTAGGCCTTATCACAT-TATATACTCTTTCACATTC
*
214903211 ATCACATCGGCCATTAGGCCTTATCACA-TATATACTCTTTCACATTC
1 ATCACATTGGCCATTAGGCCTTATCACATTATATACTCTTTCACATTC
214903258 ATCACATTGGCCATTAGGCCTTATCACA-TATATACTCTTTCACATTC
1 ATCACATTGGCCATTAGGCCTTATCACATTATATACTCTTTCACATTC
214903305 ATCACATTGGCCATTAGGCCTTATCACA-TATATAC
1 ATCACATTGGCCATTAGGCCTTATCACATTATATAC
214903340 ATCTCCTACA
Statistics
Matches: 220, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 98 0.45
49 122 0.55
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (48 bp):
ATCACATTGGCCATTAGGCCTTATCACATTATATACTCTTTCACATTC
Found at i:214908762 original size:46 final size:46
Alignment explanation
Indices: 214908627--214908838 Score: 175
Period size: 46 Copynumber: 4.6 Consensus size: 46
214908617 GCTATTGTGA
* * * *
214908627 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTAGGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGT
* * * * * *
214908673 GCCAATGTAAGGCCATGTATGGGACATGGCATCGGCATTGAGACGAGT
1 GCTAGTGTAA-GACATGTCTGGGACAT-GCATCGGCCTCGAGACGAGT
* *
214908721 GCTAGTGTAAGACATGTCTAGGACATACATCGGCCTCGAGACGTAAGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG--AGT
* * *
214908769 --TAGTGTAAGACATGTCTGGGACATGCATTGG-CTACGAGATGTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGT
*
214908813 -C-AGCGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
214908839 GCATTGGCAC
Statistics
Matches: 134, Mismatches: 24, Indels: 17
0.77 0.14 0.10
Matches are distributed among these distances:
44 10 0.07
45 17 0.13
46 56 0.42
47 27 0.20
48 23 0.17
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGT
Found at i:214908881 original size:50 final size:47
Alignment explanation
Indices: 214908771--214908898 Score: 131
Period size: 50 Copynumber: 2.7 Consensus size: 47
214908761 ACGTAAGTTA
*
214908771 GTGTAAGA-CATGTCTGGGACAT-GCATTGGCTACGAGATGTGTCAGC
1 GTGTAAGACCATGTCTGGGACATGGCATTGGC-ACGAGATATGTCAGC
*
214908817 --GTAAGACCATGTCTGGGACATGGCATTGGCAC-AGATATGCTAGAGCC
1 GTGTAAGACCATGTCTGGGACATGGCATTGGCACGAGATATG-T-CAG-C
* * *
214908864 TGTGTAAGACCATGTCTGGAATATGGCATCGGCAC
1 -GTGTAAGACCATGTCTGGGACATGGCATTGGCAC
214908899 CTTACCCCAT
Statistics
Matches: 69, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
44 12 0.17
45 17 0.25
46 10 0.14
47 1 0.01
50 29 0.42
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATTGGCACGAGATATGTCAGC
Found at i:214910851 original size:40 final size:40
Alignment explanation
Indices: 214910797--214910943 Score: 208
Period size: 40 Copynumber: 3.7 Consensus size: 40
214910787 TGAATGATAC
* *
214910797 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
214910836 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
214910876 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
214910916 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
214910944 TTGTGGTTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 9 0.09
40 87 0.89
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:214918479 original size:40 final size:39
Alignment explanation
Indices: 214918434--214918641 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 39
214918424 CGGATTACAA
*
214918434 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
214918474 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
214918514 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
214918554 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * *
214918594 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
214918634 CCGGATAT
1 CCGGATAT
214918642 CATTCAATTG
Statistics
Matches: 145, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 1 0.01
40 144 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:214918574 original size:80 final size:80
Alignment explanation
Indices: 214918434--214918641 Score: 265
Period size: 80 Copynumber: 2.6 Consensus size: 80
214918424 CGGATTACAA
* * *
214918434 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
214918499 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
214918514 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
214918578 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * * * *
214918594 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
214918642 CATTCAATTG
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 109 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:214921217 original size:12 final size:12
Alignment explanation
Indices: 214921200--214921225 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
214921190 TTTGGGGTGA
214921200 AAGGCGGTGCTG
1 AAGGCGGTGCTG
214921212 AAGGCGGTGCTG
1 AAGGCGGTGCTG
214921224 AA
1 AA
214921226 ATGCAACTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.15, G:0.46, T:0.15
Consensus pattern (12 bp):
AAGGCGGTGCTG
Found at i:214927477 original size:46 final size:46
Alignment explanation
Indices: 214927427--214927602 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
214927417 TATTTGGGCA
214927427 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
214927473 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
214927520 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
214927566 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
214927603 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:214927582 original size:93 final size:93
Alignment explanation
Indices: 214927423--214927594 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
214927413 TGGATATTTG
* *
214927423 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
214927488 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
214927516 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
214927581 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
214927595 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:214930570 original size:15 final size:15
Alignment explanation
Indices: 214930550--214930618 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
214930540 GTATCTTGGG
214930550 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
214930565 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
214930580 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
214930595 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
214930610 TTTCTTTAT
1 TTTCTTTAT
214930619 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:214930619 original size:30 final size:30
Alignment explanation
Indices: 214930541--214930628 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
214930531 CATAGTATCG
* * * *
214930541 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
214930571 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
214930601 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
214930629 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:214933066 original size:46 final size:46
Alignment explanation
Indices: 214933013--214933188 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
214933003 TATTTGGGCA
214933013 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
214933059 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
214933106 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
214933152 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
214933189 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:214933168 original size:93 final size:93
Alignment explanation
Indices: 214933009--214933180 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
214932999 GGGATATTTG
* *
214933009 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
214933074 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
214933102 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
214933167 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
214933181 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:214937533 original size:80 final size:80
Alignment explanation
Indices: 214937449--214937597 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
214937439 TATGGTAACC
* * * *
214937449 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
214937513 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
214937529 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
214937594 CCGG
66 CCGG
214937598 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:214937539 original size:40 final size:38
Alignment explanation
Indices: 214937490--214937597 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
214937480 ATCACGATTT
*
214937490 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
214937530 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
214937570 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
214937598 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:214945650 original size:80 final size:80
Alignment explanation
Indices: 214945566--214945714 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
214945556 TATGGTAACC
* * * *
214945566 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
214945630 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
214945646 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
214945711 CCGG
66 CCGG
214945715 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:214945656 original size:40 final size:38
Alignment explanation
Indices: 214945607--214945714 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
214945597 ATCACGATTT
*
214945607 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
214945647 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
214945687 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
214945715 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:214949524 original size:71 final size:71
Alignment explanation
Indices: 214949440--214949603 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
214949430 CGATTTGTCT
214949440 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
214949505 CTTTCA
66 CTTTCA
214949511 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
214949576 CTTTCA
66 CTTTCA
214949582 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
214949604 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:214949641 original size:71 final size:70
Alignment explanation
Indices: 214949440--214949637 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
214949430 CGATTTGTCT
* * * *
214949440 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
214949505 CTTTCA
65 CTTTCA
* * * *
214949511 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
214949576 CTTTCA
65 CTTTCA
* *
214949582 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
214949638 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:214955540 original size:40 final size:40
Alignment explanation
Indices: 214955495--214955661 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
214955485 CGGAATATAA
214955495 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
214955535 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
214955575 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
214955615 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
214955654 CCGGATAT
1 CCGGATAT
214955662 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:214963506 original size:40 final size:40
Alignment explanation
Indices: 214963461--214963627 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
214963451 CGGAATATAA
214963461 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
214963501 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
214963541 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
214963581 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
214963620 CCGGATAT
1 CCGGATAT
214963628 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:214971477 original size:40 final size:40
Alignment explanation
Indices: 214971432--214971598 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
214971422 CGGAATATAA
214971432 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
214971472 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
214971512 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
214971552 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
214971591 CCGGATAT
1 CCGGATAT
214971599 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:214979412 original size:40 final size:40
Alignment explanation
Indices: 214979367--214979533 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
214979357 CGGAATATAA
214979367 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
214979407 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
214979447 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
214979487 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
214979526 CCGGATAT
1 CCGGATAT
214979534 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:214983971 original size:35 final size:36
Alignment explanation
Indices: 214983881--214983998 Score: 202
Period size: 36 Copynumber: 3.3 Consensus size: 36
214983871 TTATTACGAA
*
214983881 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
1 GTCTTACCC-GACATAATCTCCACACGTAGTCATCGG
214983918 GTCTTACCCGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGACATAATCTCCACACGTAGTCATCGG
214983954 GTCTTA-CCGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGACATAATCTCCACACGTAGTCATCGG
*
214983989 GTCTCACCCG
1 GTCTTACCCG
214983999 GAACATATTT
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
35 34 0.44
36 35 0.45
37 9 0.12
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.25
Consensus pattern (36 bp):
GTCTTACCCGACATAATCTCCACACGTAGTCATCGG
Found at i:214984175 original size:47 final size:48
Alignment explanation
Indices: 214984045--214984195 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
214984035 TGTTACAACA
*
214984045 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
214984093 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
214984141 TTCACATTAGCC-TTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
214984188 TTCACATT
1 TTCACATT
214984196 CATCACATCG
Statistics
Matches: 102, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
47 43 0.42
48 59 0.58
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:214984244 original size:49 final size:49
Alignment explanation
Indices: 214984187--214984617 Score: 737
Period size: 49 Copynumber: 8.9 Consensus size: 49
214984177 CACACATATA
*
214984187 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* *
214984236 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT---C
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214984282 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214984331 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214984378 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214984427 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214984476 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214984525 TTTCATATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214984574 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
214984618 CATCTCATAC
Statistics
Matches: 365, Mismatches: 12, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
46 43 0.12
47 45 0.12
49 277 0.76
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.35
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:214987842 original size:40 final size:40
Alignment explanation
Indices: 214987733--214987951 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
214987723 CCAGCATGAT
* ** *
214987733 TGCTCTTCGGGACCTAGCCCGGAT--ATCACCAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
* *
214987771 TGCTCTTCGG---TTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
*
214987808 TGCTCTTCGGAATTTATCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
* **
214987848 TGCTCTTCGGAACTTATTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
* *
214987888 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
214987928 TGCTCTTCGGAATTTAG-CCGGATA
1 TGCTCTTCGGAATTTAGCCCGGATA
214987952 TAACCACAAG
Statistics
Matches: 163, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
35 9 0.06
37 23 0.14
38 10 0.06
39 7 0.04
40 114 0.70
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAATTTAGCCCGGATACATCACTAGCACGAA
Found at i:214987964 original size:120 final size:116
Alignment explanation
Indices: 214987757--214987976 Score: 309
Period size: 120 Copynumber: 1.9 Consensus size: 116
214987747 TAGCCCGGAT
214987757 ATCACCAGCACGAATGCTCTTCGGTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAATT
1 ATCACCAGCACGAATGCTCTTCGGTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAATT
* * *
214987822 TATCCCGGATACATCACTAGCACGAA-TGCTCTTCGGAACTTATTCCGGATAC
66 TATCCCGGATAAACCACAAGCAC-AATTGC-CTTCGGAACTTATTCCGGATAC
* * *
214987874 ATCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAATGCTCTTCGGA
1 ATCACCAGCACGAATGCTCTTCGG---TTAGCACGGATATATCACTAGCACGAATGCTCTTCGGA
*
214987939 ATTTA-GCCGGATATAACCACAAGCACAATTGCCTTCGG
63 ATTTATCCCGGATA-AACCACAAGCACAATTGCCTTCGG
214987977 GTCTTAACCC
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
117 23 0.25
119 15 0.16
120 53 0.58
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (116 bp):
ATCACCAGCACGAATGCTCTTCGGTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAATT
TATCCCGGATAAACCACAAGCACAATTGCCTTCGGAACTTATTCCGGATAC
Found at i:214987994 original size:40 final size:40
Alignment explanation
Indices: 214987901--214988068 Score: 146
Period size: 40 Copynumber: 4.2 Consensus size: 40
214987891 TCTTCGGAAT
* ** * *
214987901 TTAGCCCGGATAT-ATCATTAGCACGAATGCTCTTCGGAAT-
1 TTAGCCCGGATATAACCACAAGCACAAATGC-CTTCGG-GTC
*
214987941 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGTC
* * * *
214987980 TTAACCCGGGTATAACAACTCA-CACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCAC-AAGCACAAATGCCTTCGGGTC
** * * *
214988020 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGTC
214988060 TTAGCCCGG
1 TTAGCCCGG
214988069 GTATCATTCA
Statistics
Matches: 104, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
38 1 0.01
39 18 0.17
40 84 0.81
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACAAGCACAAATGCCTTCGGGTC
Found at i:214988010 original size:120 final size:117
Alignment explanation
Indices: 214987733--214988065 Score: 306
Period size: 120 Copynumber: 2.8 Consensus size: 117
214987723 CCAGCATGAT
* * * * *
214987733 TGCTCTTCGGGACCTAGCCCGGATATC-AC-C-AGCACGAATGCTCTTCGG-TTAGCACGGATAT
1 TGCTCTTCGGAACTTAACCCGGATA-CAACACTAGCACAAATGCTCTTCGGTTTAGCCCGGATAT
* * * *
214987794 ATCACTAGCACGAATGCTCTTCGGAATTTATCCCGGATACATCACTAGCACGAA
65 ATCACTAGCACGAATGCTCTTCGGAATTTA-GCCGGATAAACCACAAGCACGAA
** * *
214987848 TGCTCTTCGGAACTTATTCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAGCCCGGATA
1 TGCTCTTCGGAACTTAACCCGGATACAACACTAGCACAAATGCTCTTCGG--TTTAGCCCGGATA
*
214987913 TATCATTAGCACGAATGCTCTTCGGAATTTAGCCGGATATAACCACAAGCAC-AA
64 TATCACTAGCACGAATGCTCTTCGGAATTTAGCCGGATA-AACCACAAGCACGAA
** * *
214987967 TTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAATGC-CTTCGGGTCTTAGCCCGG
1 -TGCTCTTCGGAACTTAACCCGGATACAAC-ACT-AGCACAAATGCTCTTC-GGT-TTAGCCCGG
** * *
214988029 ATATATTCACTAGCATAAATGC-CTTCGGGACTTAGCC
61 ATATA-TCACTAGCACGAATGCTCTTCGGAATTTAGCC
214988066 CGGGTATCAT
Statistics
Matches: 181, Mismatches: 24, Indels: 22
0.80 0.11 0.10
Matches are distributed among these distances:
114 1 0.01
115 22 0.12
116 1 0.01
117 18 0.10
118 1 0.01
119 58 0.32
120 79 0.44
121 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (117 bp):
TGCTCTTCGGAACTTAACCCGGATACAACACTAGCACAAATGCTCTTCGGTTTAGCCCGGATATA
TCACTAGCACGAATGCTCTTCGGAATTTAGCCGGATAAACCACAAGCACGAA
Found at i:214990023 original size:37 final size:37
Alignment explanation
Indices: 214989973--214990092 Score: 222
Period size: 37 Copynumber: 3.2 Consensus size: 37
214989963 TTATTACGAA
214989973 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
214990010 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
214990047 GTCTTACCAGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
214990084 GTCTCACCC
1 GTCTTACCC
214990093 AGAACATATT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:214990198 original size:48 final size:48
Alignment explanation
Indices: 214990140--214990291 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
214990130 TGTTACAACA
*
214990140 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
214990188 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
214990236 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
214990284 TTCACATT
1 TTCACATT
214990292 CATCACATCG
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:214990340 original size:49 final size:49
Alignment explanation
Indices: 214990283--214990616 Score: 559
Period size: 49 Copynumber: 6.9 Consensus size: 49
214990273 CACACATATA
*
214990283 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
214990332 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214990379 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214990428 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214990475 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214990524 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
214990573 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
214990617 CATCTCATAC
Statistics
Matches: 269, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 89 0.33
49 180 0.67
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:214990383 original size:96 final size:96
Alignment explanation
Indices: 214990283--214990616 Score: 587
Period size: 96 Copynumber: 3.5 Consensus size: 96
214990273 CACACATATA
* *
214990283 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
214990348 TCGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACTC
*
214990379 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
214990444 TTGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACTC
*
214990475 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
214990540 TTGGCCATTAGGCCTTATCACATGTATATACAC
66 TTGGCCATTAGGCCTTATCACA--TATATACTC
*
214990573 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
214990617 CATCTCATAC
Statistics
Matches: 229, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
96 179 0.78
98 50 0.22
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACTC
Found at i:214990439 original size:145 final size:146
Alignment explanation
Indices: 214990283--214990616 Score: 584
Period size: 145 Copynumber: 2.3 Consensus size: 146
214990273 CACACATATA
*
214990283 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
214990348 TCGGCCATTAGGCCTTATCACA-TATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTA
66 TCGGCCATTAGGCCTTATCACAGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
214990412 TCACATGTATATACAC
131 TCACATGTATATACAC
* *
214990428 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
214990491 TTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCACA-GTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
214990556 ATCACATGTATATACAC
130 ATCACATGTATATACAC
*
214990573 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
214990617 CATCTCATAC
Statistics
Matches: 179, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
143 45 0.25
145 129 0.72
147 5 0.03
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.34
Consensus pattern (146 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACAGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
TCACATGTATATACAC
Found at i:214995677 original size:40 final size:40
Alignment explanation
Indices: 214995595--214995778 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
214995585 TATTCGAATG
214995595 ATATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
214995635 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
214995675 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
214995715 ATATCCGGGCTAAG-TCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
214995755 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
214995779 CTTGTGCAAG
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 1 0.01
40 112 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:214995728 original size:80 final size:80
Alignment explanation
Indices: 214995595--214995785 Score: 255
Period size: 80 Copynumber: 2.4 Consensus size: 80
214995585 TATTCGAATG
* *
214995595 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGGTGACTATAACCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGGCGACTATAACCGGACTAAG-TCCCGAAGGC
*
214995659 AT-TCGTGCGAGTTG-CT
65 ATCT-GTGCGAG-TGACC
* *
214995675 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGGCGACTATAACCGGACTAAGTCCCGAAGGC
*
214995739 ATCTGTGCTAGTGACC
65 ATCTGTGCGAGTGACC
*
214995755 ATATCCGGGCTAAGACCCGAAGGCCTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGC
214995786 AAGTAGTTAT
Statistics
Matches: 100, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
79 9 0.09
80 81 0.81
81 10 0.10
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGGCGACTATAACCGGACTAAGTCCCGAAGGCA
TCTGTGCGAGTGACC
Found at i:215003842 original size:79 final size:80
Alignment explanation
Indices: 215003663--215003921 Score: 321
Period size: 79 Copynumber: 3.3 Consensus size: 80
215003653 TATTCGAATG
* * * *
215003663 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
215003728 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * *
215003744 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAA-ACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
215003808 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* *
215003823 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
215003887 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
215003901 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
215003922 ATTACTTGAG
Statistics
Matches: 156, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
77 14 0.09
78 38 0.24
79 57 0.37
80 15 0.10
81 32 0.21
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:215003908 original size:39 final size:40
Alignment explanation
Indices: 215003663--215003885 Score: 299
Period size: 39 Copynumber: 5.6 Consensus size: 40
215003653 TATTCGAATG
* *
215003663 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
215003704 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
215003744 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
215003784 ATATCCGGGCTAA-ACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
215003823 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
215003862 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
215003886 CTTGTGCAAG
Statistics
Matches: 160, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 74 0.46
40 57 0.36
41 29 0.18
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:215005554 original size:21 final size:20
Alignment explanation
Indices: 215005529--215005569 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
215005519 ATTTAAATTA
*
215005529 TCGGTAAGTATTTCGTACTCT
1 TCGGTAA-TATCTCGTACTCT
*
215005550 TCGGTAATGTCTCGTACTCT
1 TCGGTAATATCTCGTACTCT
215005570 ATTTCGGCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.17, C:0.22, G:0.20, T:0.41
Consensus pattern (20 bp):
TCGGTAATATCTCGTACTCT
Found at i:215011770 original size:28 final size:28
Alignment explanation
Indices: 215011701--215011801 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
215011691 GACAAGATTG
* * * *
215011701 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
215011731 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
215011759 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
215011788 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
215011802 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:215013966 original size:40 final size:39
Alignment explanation
Indices: 215013921--215014127 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
215013911 CGGAATACAA
215013921 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
215013961 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
215014001 CC-GATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
215014040 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
215014080 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
215014120 CCGGATAT
1 CCGGATAT
215014128 CATTCAATTG
Statistics
Matches: 140, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 38 0.27
40 99 0.71
41 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:215014060 original size:79 final size:80
Alignment explanation
Indices: 215013921--215014126 Score: 229
Period size: 79 Copynumber: 2.6 Consensus size: 80
215013911 CGGAATACAA
* * *
215013921 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
215013985 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * * **
215014001 CC-GATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
215014064 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * * * *
215014080 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATA
215014127 TCATTCAATT
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
78 3 0.03
79 62 0.60
80 39 0.38
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:215021993 original size:40 final size:39
Alignment explanation
Indices: 215021948--215022155 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
215021938 CGGAATACAA
*
215021948 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
215021988 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
215022028 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
215022068 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
215022108 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
215022148 CCGGATAT
1 CCGGATAT
215022156 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:215022088 original size:80 final size:80
Alignment explanation
Indices: 215021948--215022154 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
215021938 CGGAATACAA
* * *
215021948 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
215022012 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
215022028 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
215022092 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
215022108 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
215022155 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:215024487 original size:43 final size:42
Alignment explanation
Indices: 215024440--215024534 Score: 104
Period size: 42 Copynumber: 2.2 Consensus size: 42
215024430 TCCCAGATGT
* *
215024440 GGTCTTACATGTAATCACATATA-GATGCC-ACTGTCCCAAACAG
1 GGTCTTACACG-AA-CACATATACGATACCGA-TGTCCCAAACAG
* * *
215024483 GGTCTTACACGAACTCATATACGATACCGATGTCCCAGACAT
1 GGTCTTACACGAACACATATACGATACCGATGTCCCAAACAG
215024525 GGTCTTACAC
1 GGTCTTACAC
215024535 ATAAATCACA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
41 7 0.16
42 27 0.60
43 11 0.24
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAACACATATACGATACCGATGTCCCAAACAG
Found at i:215028570 original size:29 final size:28
Alignment explanation
Indices: 215028536--215028638 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
215028526 TACTCAATCA
*
215028536 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
215028565 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
215028594 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
215028623 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
215028639 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:215035519 original size:29 final size:28
Alignment explanation
Indices: 215035485--215035587 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
215035475 TACTCAATCA
*
215035485 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
215035514 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
215035543 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
215035572 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
215035588 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:215039534 original size:29 final size:29
Alignment explanation
Indices: 215039495--215039569 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
215039485 GGTTGAGAGA
* *
215039495 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
215039524 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
215039553 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
215039570 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:215046856 original size:40 final size:40
Alignment explanation
Indices: 215046811--215046977 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
215046801 CGGAATATAA
215046811 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
215046851 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
215046891 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
215046931 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
215046970 CCGGATAT
1 CCGGATAT
215046978 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:215054021 original size:39 final size:38
Alignment explanation
Indices: 215053977--215054105 Score: 132
Period size: 40 Copynumber: 3.3 Consensus size: 38
215053967 CGGAATATAA
215053977 CCGGATATAACATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAT-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
215054016 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAT-T-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
215054056 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACA-TTGCACAAATGCCTTCGGGTCTTAGC
215054096 CCGGATATAA
1 CCGGATATAA
215054106 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 16, Indels: 6
0.76 0.17 0.06
Matches are distributed among these distances:
39 11 0.15
40 59 0.83
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (38 bp):
CCGGATATAACATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:215054083 original size:40 final size:39
Alignment explanation
Indices: 215053992--215054142 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
215053982 TATAACATGT
* *
215053992 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
215054032 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
215054072 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
215054112 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
215054143 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 85 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:215054126 original size:80 final size:80
Alignment explanation
Indices: 215053992--215054141 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
215053982 TATAACATGT
*
215053992 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
215054056 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
215054072 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
215054135 CCCGGAT
64 CCCGGAT
215054142 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:215056282 original size:39 final size:40
Alignment explanation
Indices: 215056170--215056337 Score: 231
Period size: 38 Copynumber: 4.3 Consensus size: 40
215056160 ACGACTAGCT
215056170 CAAATGCCTTCGGGAC--AACCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
215056208 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
215056248 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
215056287 CAAATGCCTTCGGG-CTT-ACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
215056325 CGAACGCCTTCGG
1 CAAATGCCTTCGG
215056338 ATCTTAGTCC
Statistics
Matches: 121, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
38 47 0.39
39 40 0.33
40 32 0.26
41 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:215064216 original size:39 final size:38
Alignment explanation
Indices: 215064171--215064338 Score: 205
Period size: 39 Copynumber: 4.3 Consensus size: 38
215064161 ACGACTAGCT
*
215064171 CAAATGCCTTCGGGAC-AAACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGTT-TAGTAACTCGCA
* *
215064210 CGAATGCCTTCGGGACTTAACCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGTTTAGTAACTCGCA
*
215064249 CAAATGCCTTC-GGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGG-TTTAGTAACTCGCA
* *
215064287 CAAATGCCTTCGGGCTTAACCCAGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCC-GGTTTAGTAACTCGCA
* *
215064326 CGAACGCCTTCGG
1 CAAATGCCTTCGG
215064339 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
37 9 0.08
38 26 0.22
39 72 0.62
40 9 0.08
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGGCTTAACCCGGTTTAGTAACTCGCA
Found at i:215064299 original size:77 final size:77
Alignment explanation
Indices: 215064171--215064339 Score: 209
Period size: 77 Copynumber: 2.2 Consensus size: 77
215064161 ACGACTAGCT
* * *
215064171 CAAATGCCTTCGGGACAAACCCGGTTATAGTAACTCGCACGAATGCCTTCGGGACTTAA-CCGGG
1 CAAATGCCTTC-GGACAAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCAGA
215064235 TTTAGTAACTCGCA
64 TTTAGTAACTCGCA
* *
215064249 CAAATGCCTTCGG-CTTAACCCGGATT-TATTAACTCGCACAAATGCCTTCGGGCTTAACCCAGA
1 CAAATGCCTTCGGAC-AAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGCTTAACCCAGA
*
215064312 TTTATTAACTCGCA
64 TTTAGTAACTCGCA
* *
215064326 CGAACGCCTTCGGA
1 CAAATGCCTTCGGA
215064340 TCTTAGTCCG
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
76 6 0.08
77 60 0.76
78 13 0.16
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGACAAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGCTTAACCCAGATT
TAGTAACTCGCA
Found at i:215067889 original size:40 final size:40
Alignment explanation
Indices: 215067830--215067998 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
215067820 CGGGACTTTA
* * *
215067830 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
215067870 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
215067910 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
215067950 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
215067990 CCCGGATAT
1 CCCGGATAT
215067999 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:215075893 original size:40 final size:40
Alignment explanation
Indices: 215075820--215076002 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
215075810 CCGCACCAAG
* * * * *
215075820 GCCTACGGGACTTA-CCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
215075859 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
215075899 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
215075939 GCCTTCGGGTCTTAACCCGGATAT-A-AA-TTTCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCA-CA-AA-T
* *
215075979 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
215076003 CATTCAATTT
Statistics
Matches: 118, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 13 0.11
40 99 0.84
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:215083052 original size:17 final size:18
Alignment explanation
Indices: 215083010--215083058 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
215083000 AGTTGAAAAG
215083010 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
215083029 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
215083046 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
215083059 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:215083946 original size:40 final size:40
Alignment explanation
Indices: 215083880--215084046 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
215083870 AAATTGAATG
* * *
215083880 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
215083919 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
215083959 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
215083999 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
215084039 ATATCCGG
1 ATATCCGG
215084047 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:215091063 original size:17 final size:18
Alignment explanation
Indices: 215091021--215091069 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
215091011 AGTTGAAAAG
215091021 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
215091040 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
215091057 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
215091070 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:215091956 original size:40 final size:40
Alignment explanation
Indices: 215091890--215092056 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
215091880 AAATTGAATG
* * *
215091890 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
215091929 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
215091969 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
215092009 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
215092049 ATATCCGG
1 ATATCCGG
215092057 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:215095323 original size:68 final size:66
Alignment explanation
Indices: 215095251--215095422 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
215095241 CATCATGTGT
* * * *
215095251 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
215095314 TGTAG
62 TGTAG
** * *
215095319 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
215095384 AG
65 AG
* * * *
215095386 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
215095423 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:215095356 original size:64 final size:64
Alignment explanation
Indices: 215095275--215095458 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
215095265 AGACATTATG
* * *
215095275 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
215095339 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
215095404 AA
63 AA
* * *
215095406 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
215095459 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:215099765 original size:68 final size:66
Alignment explanation
Indices: 215099693--215099864 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
215099683 CATCATGTGT
* * * *
215099693 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
215099756 TGTAG
62 TGTAG
** * *
215099761 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
215099826 AG
65 AG
* * * *
215099828 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
215099865 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:215099798 original size:64 final size:64
Alignment explanation
Indices: 215099717--215099900 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
215099707 AGACATTATG
* * *
215099717 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
215099781 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
215099846 AA
63 AA
* * *
215099848 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
215099901 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:215104201 original size:68 final size:66
Alignment explanation
Indices: 215104129--215104300 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
215104119 CATCATGTGT
* * * *
215104129 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
215104192 TGTAG
62 TGTAG
** * *
215104197 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
215104262 AG
65 AG
* * * *
215104264 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
215104301 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:215104234 original size:64 final size:64
Alignment explanation
Indices: 215104153--215104336 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
215104143 AGACATTATG
* * *
215104153 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
215104217 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
215104282 AA
63 AA
* * *
215104284 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
215104337 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:215110541 original size:38 final size:38
Alignment explanation
Indices: 215110410--215110574 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 38
215110400 AAATTGAATG
* * *
215110410 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATT
* *
215110449 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT---T
215110489 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATT
* * *
215110527 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTG--CGAGATT
215110567 ATATCCGG
1 ATATCCGG
215110575 TTATATTCCG
Statistics
Matches: 106, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.26
39 18 0.17
40 58 0.55
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATT
Found at i:215110542 original size:78 final size:78
Alignment explanation
Indices: 215110410--215110558 Score: 203
Period size: 78 Copynumber: 1.9 Consensus size: 78
215110400 AAATTGAATG
*
215110410 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
215110475 TTGTGCTAGTGGCT
65 TTGTGCTAGTGGCT
* * * *
215110489 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
215110552 TTTGTGC
64 ATTGTGC
215110559 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
78 34 0.55
79 17 0.27
80 11 0.18
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCT
Found at i:215119067 original size:80 final size:79
Alignment explanation
Indices: 215118934--215119084 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
215118924 AAATTGAATG
*
215118934 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
215118999 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * *
215119013 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
*
215119076 CATTTGTGC
63 CAATTGTGC
215119085 ACGTGATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 18 0.29
80 45 0.71
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:215119098 original size:40 final size:40
Alignment explanation
Indices: 215118934--215119100 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
215118924 AAATTGAATG
* * *
215118934 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGAGATT
* * * **
215118973 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
*
215119013 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGAGATT
* * *
215119053 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GAGATT
215119093 ATATCCGG
1 ATATCCGG
215119101 TTATATTCCG
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 17 0.16
40 85 0.82
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAGATT
Found at i:215128346 original size:80 final size:80
Alignment explanation
Indices: 215128262--215128410 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
215128252 TATGGTAACC
* * * *
215128262 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
215128326 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
215128342 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
215128407 CCGG
66 CCGG
215128411 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:215128352 original size:40 final size:38
Alignment explanation
Indices: 215128303--215128410 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
215128293 ATCACGATTT
*
215128303 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
215128343 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
215128383 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
215128411 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:215132936 original size:27 final size:26
Alignment explanation
Indices: 215132843--215132954 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
215132833 AGTATGGCTG
* *
215132843 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
215132869 CCAGATACAGATAATCGTAGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
215132897 CCAAAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
215132924 CCAGATCAGATATTTGTGGCATG-GCCA
1 CCAGAACAGATA-ATGTGGCA-GAGCCA
215132951 CCAG
1 CCAG
215132955 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 5 0.07
27 53 0.72
28 16 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:215143370 original size:34 final size:34
Alignment explanation
Indices: 215143332--215143398 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
215143322 CAGTCAAATA
215143332 TAGTTTGAGCCTAAGACC-ATCTCAGTTTCAGTAG
1 TAGTTTGAGCCTAAG-CCTATCTCAGTTTCAGTAG
* * *
215143366 TAGTTTGGGCCTTAGCCTATTTCAGTTTCAGTA
1 TAGTTTGAGCCTAAGCCTATCTCAGTTTCAGTA
215143399 TCAGATATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 2 0.07
34 27 0.93
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.37
Consensus pattern (34 bp):
TAGTTTGAGCCTAAGCCTATCTCAGTTTCAGTAG
Found at i:215146463 original size:30 final size:30
Alignment explanation
Indices: 215146427--215146487 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
215146417 TTCCCGAGCC
*
215146427 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
215146457 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
215146487 T
1 T
215146488 GTATTAAAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:215148435 original size:30 final size:29
Alignment explanation
Indices: 215148341--215148442 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
215148331 TATAGTGAAT
* ** *
215148341 CCGCACACTTAGTGCTATATATTTTCCAG
1 CCGCACACTTAGTGCTATAAATTTTAAAC
*
215148370 CCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
215148398 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
215148428 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
215148443 CAATCTTGTC
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 21 0.35
29 19 0.32
30 20 0.33
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:215150598 original size:29 final size:28
Alignment explanation
Indices: 215150540--215150636 Score: 153
Period size: 28 Copynumber: 3.4 Consensus size: 28
215150530 AGTAAGTCCA
215150540 CACACTTAGTGCT-TAATATTCAAACTCG
1 CACACTTAGTGCTATAA-ATTCAAACTCG
215150568 CACACTTAGTGCTATGAAATTCAAACTCG
1 CACACTTAGTGCTAT-AAATTCAAACTCG
215150597 CACACTTAGTGCTATACAATT-AAACTCG
1 CACACTTAGTGCTATA-AATTCAAACTCG
215150625 CACACTTAGTGC
1 CACACTTAGTGC
215150637 CAATCTCATT
Statistics
Matches: 66, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
28 33 0.50
29 31 0.47
30 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CACACTTAGTGCTATAAATTCAAACTCG
Found at i:215151761 original size:17 final size:18
Alignment explanation
Indices: 215151724--215151761 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
215151714 ACATTTTTTT
215151724 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
215151743 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
215151760 TT
1 TT
215151762 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:215161479 original size:29 final size:28
Alignment explanation
Indices: 215161421--215161517 Score: 153
Period size: 28 Copynumber: 3.4 Consensus size: 28
215161411 AGTAAGTCCA
215161421 CACACTTAGTGCT-TAATATTCAAACTCG
1 CACACTTAGTGCTATAA-ATTCAAACTCG
215161449 CACACTTAGTGCTATGAAATTCAAACTCG
1 CACACTTAGTGCTAT-AAATTCAAACTCG
215161478 CACACTTAGTGCTATACAATT-AAACTCG
1 CACACTTAGTGCTATA-AATTCAAACTCG
215161506 CACACTTAGTGC
1 CACACTTAGTGC
215161518 CAATCTCATT
Statistics
Matches: 66, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
28 33 0.50
29 31 0.47
30 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CACACTTAGTGCTATAAATTCAAACTCG
Found at i:215162644 original size:17 final size:18
Alignment explanation
Indices: 215162607--215162644 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
215162597 ACATTTTTTT
215162607 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
215162626 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
215162643 TT
1 TT
215162645 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:215169794 original size:30 final size:30
Alignment explanation
Indices: 215169739--215169869 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
215169729 ATAGTGAATC
*
215169739 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
215169768 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
215169798 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
215169826 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
215169856 CGCACACTTAGTGC
1 CGCACACTTAGTGC
215169870 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:215169849 original size:58 final size:58
Alignment explanation
Indices: 215169738--215169869 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
215169728 TATAGTGAAT
* * * * *
215169738 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
215169797 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
215169855 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
215169870 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:215187016 original size:26 final size:26
Alignment explanation
Indices: 215186980--215187115 Score: 229
Period size: 26 Copynumber: 5.2 Consensus size: 26
215186970 CATGAAATTC
*
215186980 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
215187006 TTATCATGAAACATTTACCTAA-CTCA
1 TTATCATGAAACATTTACCTAACCT-A
*
215187032 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
215187058 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
215187084 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
215187110 TTATCA
1 TTATCA
215187116 ATTTGTATCA
Statistics
Matches: 105, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
25 1 0.01
26 102 0.97
27 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:215191143 original size:27 final size:26
Alignment explanation
Indices: 215191106--215191247 Score: 158
Period size: 27 Copynumber: 5.3 Consensus size: 26
215191096 AGCATGGCTG
* *
215191106 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
215191132 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
215191160 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
215191187 CCAGATCAGATATTTGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
215191214 CTAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
215191241 CCAGAAC
1 CCAGAAC
215191248 GCTTCTTCCA
Statistics
Matches: 103, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
26 5 0.05
27 81 0.79
28 17 0.17
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:215191165 original size:54 final size:54
Alignment explanation
Indices: 215191106--215191245 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
215191096 AGCATGGCTG
*
215191106 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
215191160 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGTAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
* * * * *
215191214 CTAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGACAGAGCCACCAGA
215191246 ACGCTTCTTC
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
54 58 0.76
55 18 0.24
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:215192892 original size:26 final size:26
Alignment explanation
Indices: 215192856--215192991 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
215192846 CATGAAATTC
*
215192856 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
215192882 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
215192908 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
215192934 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
215192960 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
215192986 TTATCA
1 TTATCA
215192992 ATTTGTATCA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:215196460 original size:9 final size:9
Alignment explanation
Indices: 215196446--215196477 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
215196436 CAACGCTTTT
215196446 TTGCATTCA
1 TTGCATTCA
215196455 TTGCATTCA
1 TTGCATTCA
215196464 TTGCATTCA
1 TTGCATTCA
215196473 -TGCAT
1 TTGCAT
215196478 CGACATTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.22
9 18 0.78
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (9 bp):
TTGCATTCA
Found at i:215204565 original size:25 final size:27
Alignment explanation
Indices: 215204528--215204580 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
215204518 TCAAACATGC
215204528 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
215204554 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
215204580 A
1 A
215204581 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:215217740 original size:29 final size:29
Alignment explanation
Indices: 215217707--215217838 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
215217697 GTGACGAGAT
215217707 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
215217736 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
215217765 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
215217794 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
215217823 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
215217839 AGTTCGGAGG
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:215225798 original size:29 final size:29
Alignment explanation
Indices: 215225765--215225867 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
215225755 GTGACGAGAT
215225765 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
215225794 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
215225823 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
215225852 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
215225868 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:215230438 original size:43 final size:42
Alignment explanation
Indices: 215230363--215230443 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
215230353 TCTAAACTCA
* * **
215230363 TTCACCGGCATTTTGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTTAGCCTACTAGGCCCGAAGCCCGATATCAT
215230405 TTCACCGGCATTATAGCCTACTAGGCCCGAAGCCCGATA
1 TTCACCGGCATT-TAGCCTACTAGGCCCGAAGCCCGATA
215230444 ATATTATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 12 0.35
43 22 0.65
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (42 bp):
TTCACCGGCATTTAGCCTACTAGGCCCGAAGCCCGATATCAT
Found at i:215230641 original size:28 final size:28
Alignment explanation
Indices: 215230603--215230700 Score: 142
Period size: 28 Copynumber: 3.5 Consensus size: 28
215230593 GAATCATTCG
* *
215230603 ATATTTTGCACACGAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
* *
215230631 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
215230659 ATATTTCGTACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
215230687 ATATTTCGTACACT
1 ATATTTCGCACACT
215230701 GAGTACCATA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGTCATTCTCA
Found at i:215236052 original size:38 final size:39
Alignment explanation
Indices: 215236008--215236110 Score: 154
Period size: 38 Copynumber: 2.6 Consensus size: 39
215235998 AATGTTCGAG
* *
215236008 TGATATCCGGGCTAAGCCCGAAGGCAATTG-GCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTA
*
215236046 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTA
*
215236085 TGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
215236111 CTTTGTGCGG
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 30 0.51
39 20 0.34
40 9 0.15
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTA
Found at i:215244035 original size:39 final size:39
Alignment explanation
Indices: 215243981--215244124 Score: 236
Period size: 39 Copynumber: 3.7 Consensus size: 39
215243971 GAATGTTCGA
215243981 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
215244020 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTG-AGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCA-AATT
*
215244059 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
215244098 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
215244125 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 86 0.89
40 10 0.10
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:215248739 original size:21 final size:20
Alignment explanation
Indices: 215248715--215248754 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
215248705 ACTTGTATAA
*
215248715 CTATCATCAAACATTCAAAAT
1 CTATCAACAAAC-TTCAAAAT
*
215248736 CTATCAAGAAACTTCAAAA
1 CTATCAACAAACTTCAAAA
215248755 ATCATGGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.50, C:0.23, G:0.03, T:0.25
Consensus pattern (20 bp):
CTATCAACAAACTTCAAAAT
Found at i:215249012 original size:12 final size:12
Alignment explanation
Indices: 215248995--215249021 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
215248985 TTCAGTTTTG
215248995 TTTTAATTATCA
1 TTTTAATTATCA
215249007 TTTTAATTATCA
1 TTTTAATTATCA
215249019 TTT
1 TTT
215249022 ACCATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTTAATTATCA
Found at i:215251302 original size:5 final size:5
Alignment explanation
Indices: 215251292--215251329 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
215251282 TTTGTTTTAG
*
215251292 ATTTT ATTTT ATTTT ATTTT A-TTT -TTCT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
215251330 TGGAAGTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 5 0.17
5 24 0.83
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:215252019 original size:21 final size:21
Alignment explanation
Indices: 215251995--215252035 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
215251985 CTCATACGGC
215251995 CGTGTCCCTGCT-TCACATGGG
1 CGTGTCCCT-CTATCACATGGG
*
215252016 CGTGTGCCTCTATCACATGG
1 CGTGTCCCTCTATCACATGG
215252036 CCATGTGCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.12, C:0.32, G:0.27, T:0.29
Consensus pattern (21 bp):
CGTGTCCCTCTATCACATGGG
Found at i:215262406 original size:28 final size:28
Alignment explanation
Indices: 215262374--215262442 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
215262364 GCGTAGATCA
215262374 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
215262402 CGAAATTACCCCTAAAGAGCAAAATTAT
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
215262430 CGATA-TACCCCTA
1 CGAAATTACCCCTA
215262443 GGGTTTTAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:215263989 original size:46 final size:46
Alignment explanation
Indices: 215263931--215264111 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
215263921 TAGGATGGTT
*
215263931 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
215263977 GAGCGTCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
* *
215264023 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
215264070 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
215264112 GCGGGTTACA
Statistics
Matches: 114, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 70 0.61
47 32 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Done.