Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 683 of 770
Found at i:215264092 original size:93 final size:93
Alignment explanation
Indices: 215263933--215264103 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
215263923 GGATGGTTGA
* * *
215263933 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
215263998 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
215264026 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
215264091 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
215264104 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:215271502 original size:20 final size:20
Alignment explanation
Indices: 215271477--215271514 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
215271467 GTTTATTCGC
*
215271477 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
215271497 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
215271515 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:215273161 original size:28 final size:28
Alignment explanation
Indices: 215273129--215273197 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
215273119 GCGTAGATCA
215273129 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
215273157 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
215273185 CGATA-TACCCCTA
1 CGAAATTACCCCTA
215273198 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:215279439 original size:40 final size:40
Alignment explanation
Indices: 215279394--215279560 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
215279384 CGGAATATAA
*
215279394 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
215279434 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
215279474 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
215279514 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
215279553 CCGGATAT
1 CCGGATAT
215279561 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:215279544 original size:80 final size:79
Alignment explanation
Indices: 215279410--215279560 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
215279400 ATAACCATGT
*
215279410 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
215279475 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
215279490 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
215279553 CCGGATAT
64 CCGGATAT
215279561 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:215287468 original size:40 final size:40
Alignment explanation
Indices: 215287423--215287589 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
215287413 CGGAATATAA
*
215287423 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
215287463 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
215287503 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
215287543 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
215287582 CCGGATAT
1 CCGGATAT
215287590 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:215287573 original size:80 final size:79
Alignment explanation
Indices: 215287439--215287589 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
215287429 ATAACCATGT
*
215287439 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
215287504 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
215287519 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
215287582 CCGGATAT
64 CCGGATAT
215287590 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:215292652 original size:28 final size:28
Alignment explanation
Indices: 215292612--215292665 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
215292602 TGGAAATTAA
215292612 CTTACCAATCATATTCATTTAAAGTAAG
1 CTTACCAATCATATTCATTTAAAGTAAG
215292640 CTTACCAATCATATTCATTTAAAGTA
1 CTTACCAATCATATTCATTTAAAGTA
215292666 GGCATACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.37
Consensus pattern (28 bp):
CTTACCAATCATATTCATTTAAAGTAAG
Found at i:215294045 original size:61 final size:61
Alignment explanation
Indices: 215293970--215294088 Score: 220
Period size: 61 Copynumber: 2.0 Consensus size: 61
215293960 GCACCAAAAT
*
215293970 CACTTAAATTTTGATAGACCACACAGTCGTGCCATGAGCCCATGTATGGCACATGGCCTAG
1 CACTTAAATTTTGATAGACCACACAGTCGTGCCATAAGCCCATGTATGGCACATGGCCTAG
*
215294031 CACTTAAATTTTGATAGACCACATAGTCGTGCCATAAGCCCATGTATGGCACATGGCC
1 CACTTAAATTTTGATAGACCACACAGTCGTGCCATAAGCCCATGTATGGCACATGGCC
215294089 GTGTGCTAGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (61 bp):
CACTTAAATTTTGATAGACCACACAGTCGTGCCATAAGCCCATGTATGGCACATGGCCTAG
Found at i:215295528 original size:22 final size:22
Alignment explanation
Indices: 215295500--215295543 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
215295490 TCTCATTAGT
*
215295500 ATAACTGAAGCAATTTGGCACC
1 ATAACTGAAGCAAATTGGCACC
215295522 ATAACTGAAGCAAATTGGCACC
1 ATAACTGAAGCAAATTGGCACC
215295544 CAGTGCCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (22 bp):
ATAACTGAAGCAAATTGGCACC
Found at i:215298263 original size:26 final size:26
Alignment explanation
Indices: 215298232--215298448 Score: 278
Period size: 26 Copynumber: 8.3 Consensus size: 26
215298222 TAGATAAGGA
*
215298232 AAAGCCTTTGTGGCATAATATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
*
215298258 AAAGCCTTTGTGGCGTAGTATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
* *
215298284 AAAGCCTTTGTGGCGTAGTATGAAAT
1 AAAGCCTTTGTGGCGTAATATGAAAG
* *
215298310 AAAGCCTTTGTGGTGTAGTATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
215298336 AAAGCCTTTGTGGCGTAATATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
* *
215298362 AAA-CCTTTGTGGTGAAATATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
*
215298387 AATAGCCTTTGTGGCGTAAAAT-AAATTG
1 AA-AGCCTTTGTGGCGTAATATGAAA--G
*
215298415 AAAGCCTTTGTGGCG-AACCATGAAAAG
1 AAAGCCTTTGTGGCGTAA-TATG-AAAG
215298442 AAAGCCT
1 AAAGCCT
215298449 CTATGGTAAA
Statistics
Matches: 171, Mismatches: 13, Indels: 13
0.87 0.07 0.07
Matches are distributed among these distances:
25 22 0.13
26 106 0.62
27 37 0.22
28 3 0.02
29 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (26 bp):
AAAGCCTTTGTGGCGTAATATGAAAG
Found at i:215300078 original size:86 final size:85
Alignment explanation
Indices: 215299971--215300146 Score: 316
Period size: 86 Copynumber: 2.1 Consensus size: 85
215299961 CTTTTATTCC
*
215299971 TTTTATTTATCATCTTTTAGCTTAGTTCTCTTGTCTTTTTCTCTAAAGTTCTTTCGGGTTTTGTG
1 TTTTATTTATCATCTTTTAGCTTAGTTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTG
215300036 TTTTCCTGGTTTTCTTTAGTG
66 TTTT-CTGGTTTTCTTTAGTG
*
215300057 TTTTGTTTATCATCTTTTAGCTTAGTTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTG
1 TTTTATTTATCATCTTTTAGCTTAGTTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTG
*
215300122 TTTTTTGGTTTTCTTTAGTG
66 TTTTCTGGTTTTCTTTAGTG
215300142 TTTTA
1 TTTTA
215300147 GGTAGGTAGT
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
85 19 0.22
86 67 0.78
ACGTcount: A:0.10, C:0.14, G:0.15, T:0.60
Consensus pattern (85 bp):
TTTTATTTATCATCTTTTAGCTTAGTTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTG
TTTTCTGGTTTTCTTTAGTG
Found at i:215302714 original size:29 final size:29
Alignment explanation
Indices: 215302648--215302734 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
215302638 AATTTCACAT
* * *
215302648 ACCTGTATTTGGCCCACTAAGCCC-AATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
**
215302676 ATAT-TCATATGGCCCATTAGGCCCAAATC
1 ACCTGT-ATATGGCCCATTAGGCCCAAATC
215302705 ACCTGTATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
215302734 A
1 A
215302735 TATTTATATT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
27 1 0.02
28 17 0.35
29 30 0.61
30 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAGGCCCAAATC
Found at i:215302742 original size:29 final size:29
Alignment explanation
Indices: 215302657--215302743 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 29
215302647 TACCTGTATT
* * *
215302657 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
** *
215302685 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
215302714 TGGCCCATTAGGCCCAAATCATATTTATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
215302743 T
1 T
215302744 TCATTCTCAC
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 13 0.27
29 36 0.73
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCATATTTATA
Found at i:215302822 original size:17 final size:18
Alignment explanation
Indices: 215302800--215302835 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
215302790 TTACCTATTA
215302800 TGGGCCCA-ATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
215302817 TGGGCCCATTTAGCCCAT
1 TGGGCCCATATAGCCCAT
215302835 T
1 T
215302836 CCGACCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.33, G:0.22, T:0.25
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:215302971 original size:8 final size:8
Alignment explanation
Indices: 215302952--215302995 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
215302942 CATAGCCAAA
215302952 CTTTT-GG
1 CTTTTCGG
*
215302959 CTTTTCTG
1 CTTTTCGG
215302967 CTTTTCGG
1 CTTTTCGG
*
215302975 CTTTTTGG
1 CTTTTCGG
*
215302983 CATTTCGG
1 CTTTTCGG
215302991 CTTTT
1 CTTTT
215302996 ACCGATACAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
7 5 0.17
8 25 0.83
ACGTcount: A:0.02, C:0.20, G:0.20, T:0.57
Consensus pattern (8 bp):
CTTTTCGG
Found at i:215304587 original size:17 final size:17
Alignment explanation
Indices: 215304565--215304600 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
215304555 GAGTAGAAAG
215304565 ATAGAATCTTTCATTGC
1 ATAGAATCTTTCATTGC
215304582 ATAGAATCTTTCATTGC
1 ATAGAATCTTTCATTGC
215304599 AT
1 AT
215304601 GCTTGTCGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.42
Consensus pattern (17 bp):
ATAGAATCTTTCATTGC
Found at i:215307881 original size:40 final size:40
Alignment explanation
Indices: 215307815--215307981 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
215307805 AAATTGAATG
* * *
215307815 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
215307854 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
215307894 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
215307934 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
215307974 ATATCCGG
1 ATATCCGG
215307982 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:215315858 original size:40 final size:40
Alignment explanation
Indices: 215315799--215315940 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
215315789 AAATTGAATG
* * *
215315799 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
215315839 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
215315879 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
215315919 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
215315941 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:215315941 original size:40 final size:39
Alignment explanation
Indices: 215315838--215315966 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
215315828 TGCTGGAAAT
* * *
215315838 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
215315878 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
215315918 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
215315958 TATATCCGG
1 TATATCCGG
215315967 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:215321586 original size:202 final size:200
Alignment explanation
Indices: 215321120--215321783 Score: 1247
Period size: 200 Copynumber: 3.3 Consensus size: 200
215321110 ATTAATATAT
215321120 AAATTAAATTGAAATATTAAATAAGAAATAAAACAATATGTTATTTGGAAAATAACTATTATTGT
1 AAATTAAATTGAAATATTAAATAAGAAATAAAACAATATGTTATTTGGAAAATAACTATTATTGT
215321185 AATGACATACATGTTTTATTAGGTATAAGTATTTAAATTTTTGTTTTTGTAATGTGAAACATGTG
66 AATGACATACATGTTTTATTAGGTATAAGTATTTAAATTTTTGTTTTTGTAATGTGAAACATGTG
215321250 TAAATATATATATAATCATATTAGTGAATCTGCTAATACATACTTTACCCGGGTAAAGTATTCAT
131 TAAATATATATATAATCATATTAGTGAATCTGCTAATACATACTTTACCCGGGTAAAGTATTCAT
215321315 TATTA
196 TATTA
*
215321320 AAATTAAATTGAAATATTAAATAAGAAATAAAACAATATGTTATTTGGAAAATAACTGTTATTGT
1 AAATTAAATTGAAATATTAAATAAGAAATAAAACAATATGTTATTTGGAAAATAACTATTATTGT
*
215321385 AATGACATACATGTTTTATTAGGTATAAGTATTTAAATTTTTGTTTTCGTAATGTGAAACATGTG
66 AATGACATACATGTTTTATTAGGTATAAGTATTTAAATTTTTGTTTTTGTAATGTGAAACATGTG
*
215321450 TAAATATATATATATAATCATATTAGTGAATCTACTAATACATACTTTACCCGGGTAAAGTATTC
131 T-AA-ATATATATATAATCATATTAGTGAATCTGCTAATACATACTTTACCCGGGTAAAGTATTC
215321515 ATTATTA
194 ATTATTA
*
215321522 AAATTAAATTGAAATATTAAATAAGAAATAAAACAATATGTTATTTGGAAAATAGCTATTATTGT
1 AAATTAAATTGAAATATTAAATAAGAAATAAAACAATATGTTATTTGGAAAATAACTATTATTGT
* *
215321587 AATGACATACATGTTTTAATAGGTATAAGTATTTAAAATTTTGTTTTTGTAATGTGAAACATGTG
66 AATGACATACATGTTTTATTAGGTATAAGTATTTAAATTTTTGTTTTTGTAATGTGAAACATGTG
215321652 TAAATATATATATAATCATATTAGTGAATCTGCTAATACATACTTTACCCGGGTAAAGTATTCAT
131 TAAATATATATATAATCATATTAGTGAATCTGCTAATACATACTTTACCCGGGTAAAGTATTCAT
215321717 TATTA
196 TATTA
*
215321722 AAATTAAATTGAAATATTAAATAAGAAATAAAACAATATGTTATTTGGAAAATAATTATTAT
1 AAATTAAATTGAAATATTAAATAAGAAATAAAACAATATGTTATTTGGAAAATAACTATTAT
215321784 GTTTTATTAG
Statistics
Matches: 451, Mismatches: 11, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
200 255 0.57
201 4 0.01
202 192 0.43
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (200 bp):
AAATTAAATTGAAATATTAAATAAGAAATAAAACAATATGTTATTTGGAAAATAACTATTATTGT
AATGACATACATGTTTTATTAGGTATAAGTATTTAAATTTTTGTTTTTGTAATGTGAAACATGTG
TAAATATATATATAATCATATTAGTGAATCTGCTAATACATACTTTACCCGGGTAAAGTATTCAT
TATTA
Found at i:215322319 original size:133 final size:134
Alignment explanation
Indices: 215322031--215323036 Score: 1656
Period size: 136 Copynumber: 7.5 Consensus size: 134
215322021 ATTGAATAGG
** **
215322031 TGTATTTCTAAAATATTATGATTTTATTTTTTAAAATATACTATTTTTATATTTTATTTTTTATC
1 TGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATC
*
215322096 TTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTTTATATAAACCTAATTTTGTCCCTTT
66 TTATTTTAGTACATAAATGTATAACTTTAGTG--TTTTTTTATATAACCCTAATTTTGTCCCTTT
215322161 ATTATT
129 ATTATT
215322167 TGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA-TTTTTATC
1 TGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATC
215322231 TTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCCTTTAT
66 TTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCCTTTAT
215322296 TATT
131 TATT
* *
215322300 TGTATTTTTAAAATATTCGGATTTTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATC
1 TGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATC
215322365 TTATATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCCTTT
66 -T-TATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCCTTT
215322430 ATTATT
129 ATTATT
*
215322436 TGTATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATC
1 TGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATC
215322501 TTATATTTTAGTACATAAATGTATAACTTTAGTG-TTTTTTATATAACCCTAATTTTGTCCCTTT
66 -T-TATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCCTTT
215322565 ATTATT
129 ATTATT
* *
215322571 TGTATTTCTAAAATATTTGGATTTTATTTTTTAAAATATATTATTTTCGTATTTTA-TTTTTATC
1 TGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATC
* *
215322635 TTATTTTAGTACATAAATATATAACTTTAGTG-TTTTTTATATAACTCTAATTTTGTCCCTTTAT
66 TTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCCTTTAT
215322699 TATT
131 TATT
*
215322703 TGTATTTCTAAAATATTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTA-TTTTTATC
1 TGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATC
*
215322767 TTATTTTAGTACATAAATGTATTACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCCTTTAT
66 TTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCCTTTAT
215322832 TATT
131 TATT
*
215322836 TGTATTTCTAAAATATTTGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATC
1 TGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATC
* * *
215322901 TTATTTTAGTACATAAATGTATTACTTTA--GTTTTTTTAAATAACCCTAATTTTGT-CC-AT-T
66 TTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCCTTTAT
*
215322961 TGTT
131 TATT
* * * * * *
215322965 TATATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA-TTCTTATA
1 TGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATC
215323029 TTATTTTA
66 TTATTTTA
215323037 TACTATTTTT
Statistics
Matches: 836, Mismatches: 29, Indels: 18
0.95 0.03 0.02
Matches are distributed among these distances:
128 14 0.02
129 57 0.07
130 1 0.00
131 2 0.00
132 181 0.22
133 180 0.22
134 53 0.06
135 130 0.16
136 218 0.26
ACGTcount: A:0.28, C:0.08, G:0.06, T:0.57
Consensus pattern (134 bp):
TGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATC
TTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCCTTTAT
TATT
Found at i:215322345 original size:22 final size:21
Alignment explanation
Indices: 215322293--215322346 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 21
215322283 TTTGTCCCTT
215322293 TATTATTTGTATTTTTAAAATA
1 TATTATTT-TATTTTTAAAATA
*
215322315 T-TCGGATTTTATTTTTTAAAATA
1 TAT--TATTTTA-TTTTTAAAATA
215322338 TATTATTTT
1 TATTATTTT
215322347 CGTATTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
21 1 0.04
22 8 0.31
23 16 0.62
24 1 0.04
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (21 bp):
TATTATTTTATTTTTAAAATA
Found at i:215322481 original size:22 final size:22
Alignment explanation
Indices: 215322432--215322482 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
215322422 GTCCCTTTAT
*
215322432 TATTTGTATTTTTAAAATATTCG
1 TATTT-TATTTTTAAAATATACG
*
215322455 GATTTTATTTTTTAAAATATAC-
1 TATTTTA-TTTTTAAAATATACG
215322477 TATTTT
1 TATTTT
215322483 CGTATTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (22 bp):
TATTTTATTTTTAAAATATACG
Found at i:215322797 original size:536 final size:531
Alignment explanation
Indices: 215322031--215323022 Score: 1713
Period size: 536 Copynumber: 1.9 Consensus size: 531
215322021 ATTGAATAGG
*
215322031 TGTATTTCTAAAATATTATGATTTTATTTTTTAAAATATACTATTTTTATATTTTATTTTTTATC
1 TGTATTTCTAAAATATTATGATTTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTTATC
*
215322096 TTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTTTATATAAACCTAATTTTGTCCCTTT
66 TTATTTTAGTACATAAATATATAACTTTAGTG--TTTTTTTATATAAACCTAATTTTGTCCCTTT
*
215322161 ATTATTTGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTT
129 ATTATTTGTATTTCTAAAATATTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTT
215322226 TTATCTTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCC
194 TTATCTTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCC
* *
215322291 TTTATTATTTGTATTTTTAAAATATTCGGATTTTATTTTTTAAAATATATTATTTTCGTATTTTA
259 TTTATTATTTGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA
*
215322356 TTTTTTATCTTATATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTT
324 TTTTTTATC-T-TATTTTAGTACATAAATGTATAACTTTA--GTTTTTTTAAATAACCCTAATTT
* *
215322421 TGTCCCTTTATTATTTGTATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGT
385 TGT-CC-AT-TTATTTATATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGT
215322486 ATTTTATTTTTTATCTTATATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTATATAACCCT
447 ATTTTATTTTTTATCTTATATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTATATAACCCT
215322551 AATTTTGTCCCTTTATTATT
512 AATTTTGTCCCTTTATTATT
* *
215322571 TGTATTTCTAAAATATT-TGGATTTTATTTTTTAAAATATATTATTTTCGTATTTTA-TTTTTAT
1 TGTATTTCTAAAATATTAT-GATTTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTTAT
215322634 CTTATTTTAGTACATAAATATATAACTTTAGTG-TTTTTTATAT-AACTCTAATTTTGTCCCTTT
65 CTTATTTTAGTACATAAATATATAACTTTAGTGTTTTTTTATATAAAC-CTAATTTTGTCCCTTT
215322697 ATTATTTGTATTTCTAAAATATTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTT
129 ATTATTTGTATTTCTAAAATATTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTT
*
215322762 TTATCTTATTTTAGTACATAAATGTATTACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCC
194 TTATCTTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCC
*
215322827 TTTATTATTTGTATTTCTAAAATATTTGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA
259 TTTATTATTTGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTA
*
215322892 TTTTTTATCTTATTTTAGTACATAAATGTATTACTTTAGTTTTTTTAAATAACCCTAATTTTGTC
324 TTTTTTATCTTATTTTAGTACATAAATGTATAACTTTAGTTTTTTTAAATAACCCTAATTTTGTC
* * *
215322957 CATTTGTTTATATTTTTAAAATTTTTGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTAT
389 CATTTATTTATATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTAT
215323022 T
454 T
215323023 CTTATATTAT
Statistics
Matches: 434, Mismatches: 16, Indels: 15
0.93 0.03 0.03
Matches are distributed among these distances:
529 59 0.14
530 1 0.00
531 2 0.00
532 25 0.06
534 27 0.06
535 4 0.01
536 225 0.52
539 40 0.09
540 51 0.12
ACGTcount: A:0.28, C:0.08, G:0.06, T:0.57
Consensus pattern (531 bp):
TGTATTTCTAAAATATTATGATTTTATTTTTTAAAATATACTATTTTCATATTTTATTTTTTATC
TTATTTTAGTACATAAATATATAACTTTAGTGTTTTTTTATATAAACCTAATTTTGTCCCTTTAT
TATTTGTATTTCTAAAATATTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTT
ATCTTATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTTATATAACCCTAATTTTGTCCCTT
TATTATTTGTATTTCTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATT
TTTTATCTTATTTTAGTACATAAATGTATAACTTTAGTTTTTTTAAATAACCCTAATTTTGTCCA
TTTATTTATATTTTTAAAATATTCGGATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTT
TTTATCTTATATTTTAGTACATAAATGTATAACTTTAGTGTTTTTTATATAACCCTAATTTTGTC
CCTTTATTATT
Found at i:215323436 original size:10 final size:11
Alignment explanation
Indices: 215323411--215323439 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
215323401 CTAAAATTAA
215323411 AAATTAAATCT
1 AAATTAAATCT
215323422 AAATTAAAT-T
1 AAATTAAATCT
215323432 AAATTAAA
1 AAATTAAA
215323440 ATCAACAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.50
11 9 0.50
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (11 bp):
AAATTAAATCT
Found at i:215323522 original size:20 final size:19
Alignment explanation
Indices: 215323499--215323542 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
215323489 CTTTCTTCCC
215323499 TCTTCTTCTCCTTCTCTTTT
1 TCTTCTTCTCCTTCT-TTTT
* **
215323519 TCTTTTTCTTTTTCTTTTT
1 TCTTCTTCTCCTTCTTTTT
215323538 TCTTC
1 TCTTC
215323543 CCTTATTTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (19 bp):
TCTTCTTCTCCTTCTTTTT
Found at i:215323530 original size:5 final size:6
Alignment explanation
Indices: 215323513--215323537 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
215323503 CTTCTCCTTC
215323513 TCTTTT TCTTTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT T
215323538 TCTTCCCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TCTTTT
Found at i:215323591 original size:14 final size:13
Alignment explanation
Indices: 215323572--215323608 Score: 58
Period size: 12 Copynumber: 2.8 Consensus size: 13
215323562 GGTTGCTCAT
215323572 TCTTCTTCTTCTTC
1 TCTTCTT-TTCTTC
215323586 TCTTCTTTTCTTC
1 TCTTCTTTTCTTC
215323599 T-TTCTTTTCT
1 TCTTCTTTTCT
215323609 CTCCTTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 9 0.39
13 7 0.30
14 7 0.30
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (13 bp):
TCTTCTTTTCTTC
Found at i:215323599 original size:22 final size:20
Alignment explanation
Indices: 215323571--215323620 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 20
215323561 TGGTTGCTCA
*
215323571 TTCTTCTTCTTCTTCTCTTCTT
1 TTCTTCTTCTT-TTCTC-TCCT
215323593 TTCTTCTTTCTTTTCTCTCCT
1 TTCTTC-TTCTTTTCTCTCCT
215323614 TTCTTCT
1 TTCTTCT
215323621 CCCCAAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 9 0.35
22 11 0.42
23 5 0.19
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (20 bp):
TTCTTCTTCTTTTCTCTCCT
Found at i:215323617 original size:14 final size:12
Alignment explanation
Indices: 215323574--215323618 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 12
215323564 TTGCTCATTC
215323574 TTCTTCTTCTTCT
1 TTCTT-TTCTTCT
215323587 CTTCTTTTCTTCT
1 -TTCTTTTCTTCT
215323600 TTCTTTTCTCTCCT
1 TTCTTTTCT-T-CT
215323614 TTCTT
1 TTCTT
215323619 CTCCCCAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.31
13 8 0.28
14 12 0.41
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (12 bp):
TTCTTTTCTTCT
Found at i:215323828 original size:11 final size:10
Alignment explanation
Indices: 215323810--215323844 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
215323800 TGTACTATTT
215323810 TTTTTACTTG
1 TTTTTACTTG
215323820 TTTTATACTT-
1 TTTT-TACTTG
215323830 TTTTTACTTG
1 TTTTTACTTG
215323840 TTTTT
1 TTTTT
215323845 TTAACAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 5 0.22
10 13 0.57
11 5 0.22
ACGTcount: A:0.11, C:0.09, G:0.06, T:0.74
Consensus pattern (10 bp):
TTTTTACTTG
Found at i:215323845 original size:11 final size:11
Alignment explanation
Indices: 215323809--215323845 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
215323799 TTGTACTATT
215323809 TTTTTTACTTG
1 TTTTTTACTTG
*
215323820 TTTTATAC-T-
1 TTTTTTACTTG
215323829 TTTTTTACTTG
1 TTTTTTACTTG
215323840 TTTTTT
1 TTTTTT
215323846 TAACAGATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 7 0.32
10 2 0.09
11 13 0.59
ACGTcount: A:0.11, C:0.08, G:0.05, T:0.76
Consensus pattern (11 bp):
TTTTTTACTTG
Found at i:215324124 original size:16 final size:16
Alignment explanation
Indices: 215324103--215324150 Score: 96
Period size: 16 Copynumber: 3.0 Consensus size: 16
215324093 GTAATGCTTT
215324103 TGATCTTTATCTTTTA
1 TGATCTTTATCTTTTA
215324119 TGATCTTTATCTTTTA
1 TGATCTTTATCTTTTA
215324135 TGATCTTTATCTTTTA
1 TGATCTTTATCTTTTA
215324151 GGAAATAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.19, C:0.12, G:0.06, T:0.62
Consensus pattern (16 bp):
TGATCTTTATCTTTTA
Found at i:215326980 original size:26 final size:26
Alignment explanation
Indices: 215326943--215327078 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
215326933 TGATACAAAT
* *
215326943 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
215326969 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
215326995 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
215327021 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
215327047 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
215327073 TGATAA
1 TGATAA
215327079 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:215328594 original size:26 final size:26
Alignment explanation
Indices: 215328565--215328619 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
215328555 TTTACAGTTT
215328565 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
215328591 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
215328617 TAC
1 TAC
215328620 ATGTTTGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.38, C:0.24, G:0.15, T:0.24
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:215330987 original size:47 final size:47
Alignment explanation
Indices: 215330918--215331013 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
215330908 GAGAAAGGAG
*
215330918 ATAGTTTGATCGAGGGATATGAATCGGAGTTGTGGGATTTCACTCGC
1 ATAGTTTGATCGAGGGATATGAATCGGAGTTGTAGGATTTCACTCGC
215330965 ATAGTTTGATCGAGGGATATGAATCGGAGTTGTAGGATTTCACTCGC
1 ATAGTTTGATCGAGGGATATGAATCGGAGTTGTAGGATTTCACTCGC
215331012 AT
1 AT
215331014 CAGTGTGACT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.32
Consensus pattern (47 bp):
ATAGTTTGATCGAGGGATATGAATCGGAGTTGTAGGATTTCACTCGC
Found at i:215333081 original size:19 final size:20
Alignment explanation
Indices: 215333054--215333095 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
215333044 TCTTTTTGCA
* *
215333054 TTCATTCATTTGCATTACAT
1 TTCATTCATGTGCATTAAAT
215333074 TTCA-TCATGTGCATTAAAT
1 TTCATTCATGTGCATTAAAT
215333093 TTC
1 TTC
215333096 GCAAAAAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.48
Consensus pattern (20 bp):
TTCATTCATGTGCATTAAAT
Found at i:215341244 original size:41 final size:43
Alignment explanation
Indices: 215341188--215341340 Score: 136
Period size: 44 Copynumber: 3.5 Consensus size: 43
215341178 ATGGGCTTTA
*
215341188 AACCCCTAAGCAGTAGGGTAACAAGC-CA-ATTTACA-AGCCTT
1 AACCCCTAAGCAGTAGGGTAACAAGCGAAGATTTACAGA-CCTT
* *
215341229 AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTT
1 AACCCCTAAGCAGTAGGGTAACAAGC-GAAGATTTACAGACCTT
* * ** **
215341273 AACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-CGA-AGGGTCTT
1 AA-CCCCTAAGCAGTAGGGTAACA-AGCGAAGATTTACA-GACCTT
215341317 AAACCCCTAAGCAGTAGGGTAACA
1 -AACCCCTAAGCAGTAGGGTAACA
215341341 GACCGAATTG
Statistics
Matches: 94, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
41 25 0.27
43 2 0.02
44 38 0.40
45 28 0.30
46 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.18
Consensus pattern (43 bp):
AACCCCTAAGCAGTAGGGTAACAAGCGAAGATTTACAGACCTT
Found at i:215341358 original size:86 final size:86
Alignment explanation
Indices: 215341224--215341599 Score: 434
Period size: 86 Copynumber: 4.3 Consensus size: 86
215341214 CAATTTACAA
* * *
215341224 GCCTT-AACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGACCG-A-A-TTACAGATCTTATCCCCCTAAGCAGT
215341288 AGGGAAACAGATCGAAGACGAAGG
63 AGGGAAACAGATCGAAGACGAAGG
* * *
215341312 GTCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTGCAGATCTTATCCCCCTAAGCAGTGGG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATCCCCCTAAGCAGTAGG
* *
215341377 GAAACAGATCAAAGACAAAGG
66 GAAACAGATCGAAGACGAAGG
* * *
215341398 GTCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATCTCCCTAAGCATTAGT
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATCCCCCTAAGCAGTAG-
* * *
215341463 GGAGATA-ATCGAAGACGAAGA
65 GGAAACAGATCGAAGACGAAGG
* * ** **** * * *
215341484 ACCTTAAACCCCTAAACAGTAGGACAACAGGTTAAATTCACAGATCTTATCACCGTAAGTAGTAG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATT-ACAGATCTTATCCCCCTAAGCAGTAG
*
215341549 GGAAACAGATC-AAGACGATGG
65 GGAAACAGATCGAAGACGAAGG
* *
215341570 GCCTTAACCCCCTAAGTAGTAGGGTAACAG
1 GCCTTAAACCCCTAAGCAGTAGGGTAACAG
215341600 GCTAGAAATC
Statistics
Matches: 244, Mismatches: 40, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
86 182 0.75
87 31 0.13
88 5 0.02
89 26 0.11
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (86 bp):
GCCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATCCCCCTAAGCAGTAGG
GAAACAGATCGAAGACGAAGG
Found at i:215341403 original size:130 final size:129
Alignment explanation
Indices: 215341136--215341433 Score: 329
Period size: 130 Copynumber: 2.3 Consensus size: 129
215341126 GCGAATTCGC
* * * *
215341136 AGATCTTGACCCCCTAAGCAGTAGGGAAATAGATCGAAGATGATGGGCTTTAAACCCCTAAGCAG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCTTTAAACCCCTAAGCAG
* * * *
215341201 TAGGGTAACAAGCCAATTTACAAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTAC
66 TAGGGTAACAAGCCAATTTACAAGCCTTAACCCCTAAGCAGTAGGGAAACAGGCTAAAGA-TCAA
215341266 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGG-TCTTAAACCCCTAAGCA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCT-TTAAACCCCTAAGCA
* * * * *
215341330 GTAGGGTAAC-AGACCGAA-TTGC-AGATCTTATCCCCCTAAGCAGTGGGGAAACA-GATCAAAG
65 GTAGGGTAACAAG-CC-AATTTACAAG-CCTTA-ACCCCTAAGCAGTAGGGAAACAGGCT-AAAG
215341391 A-CAA
125 ATCAA
* * * *
215341395 AGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAA
1 A-GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAA
215341434 TTACAGATCT
Statistics
Matches: 144, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
129 7 0.05
130 112 0.78
131 25 0.17
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.18
Consensus pattern (129 bp):
AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCTTTAAACCCCTAAGCAG
TAGGGTAACAAGCCAATTTACAAGCCTTAACCCCTAAGCAGTAGGGAAACAGGCTAAAGATCAA
Found at i:215341940 original size:44 final size:44
Alignment explanation
Indices: 215341798--215342013 Score: 154
Period size: 44 Copynumber: 4.9 Consensus size: 44
215341788 GGAGCAGACT
* * *
215341798 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATC
1 GAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAA-CAGATC
* ** * *
215341843 AAAGATTTCAG--CATGGCATCCCTGTGCTTATAGGGAACA-AGTT
1 GAAGATAGCAGATC-TGACATCCCTGTGCTTATAGGGAACAGA-TC
* * * *
215341886 GAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATC
1 GAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACAGATC
* * * * *
215341930 GAAGATAGCAGATCTGACATTCCTATGCTTACAGTGAAGCAGATT
1 GAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAA-CAGATC
* ** * *
215341975 GGAGATTTCAGCATC-G-TATCCCTGTGTTTATAGGGAACA
1 GAAGATAGCAG-ATCTGACATCCCTGTGCTTATAGGGAACA
215342014 AGTTGAAGAT
Statistics
Matches: 131, Mismatches: 33, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
42 1 0.01
43 12 0.09
44 92 0.70
45 23 0.18
46 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
GAAGATAGCAGATCTGACATCCCTGTGCTTATAGGGAACAGATC
Found at i:215342044 original size:132 final size:132
Alignment explanation
Indices: 215341798--215342068 Score: 366
Period size: 132 Copynumber: 2.1 Consensus size: 132
215341788 GGAGCAGACT
* *
215341798 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATC
1 GAAGATAGCAGATCTGACATTCCTATGCTTACAGTGAAGCAGATCAAAGATTTCAGCATCGCATC
* * *
215341863 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTT-ATAGGGAACAG
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGACATCCCTGTG-TTGATAGAGAACAG
215341927 ATC
130 ATC
*** *
215341930 GAAGATAGCAGATCTGACATTCCTATGCTTACAGTGAAGCAGATTGGAGATTTCAGCATCGTATC
1 GAAGATAGCAGATCTGACATTCCTATGCTTACAGTGAAGCAGATCAAAGATTTCAGCATCGCATC
* * * * * *
215341995 CCTGTGTTTATAGGGAACAAGTTGAAGATAACATATTTGACGA-CTCTGTGTTGATAGAGAGCAG
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGAC-ATCCCTGTGTTGATAGAGAACAG
215342059 ATC
130 ATC
*
215342062 AAAGATA
1 GAAGATA
215342069 ACAGGTTTGG
Statistics
Matches: 121, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
131 2 0.02
132 118 0.98
133 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (132 bp):
GAAGATAGCAGATCTGACATTCCTATGCTTACAGTGAAGCAGATCAAAGATTTCAGCATCGCATC
CCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGACATCCCTGTGTTGATAGAGAACAGA
TC
Found at i:215342123 original size:45 final size:44
Alignment explanation
Indices: 215342019--215342164 Score: 175
Period size: 45 Copynumber: 3.3 Consensus size: 44
215342009 GAACAAGTTG
* * * *
215342019 AAGATAACATATTTGACGACTCTGTGTTGATAGAGAGCAGATCA
1 AAGATAACAGATTTGGCGTCTCTGTGTTGACAGAGAGCAGATCA
* *
215342063 AAGATAACAGGTTTGGCGTCTCTGTGTTGACAGAAGAGCAGATCG
1 AAGATAACAGATTTGGCGTCTCTGTGTTGACAG-AGAGCAGATCA
* * * *
215342108 AAGATGACAGATTTGGAGTCTCTGTATTAGACGGAGAGCAGATCA
1 AAGATAACAGATTTGGCGTCTCTGTGTT-GACAGAGAGCAGATCA
*
215342153 AAGATAGCAGAT
1 AAGATAACAGAT
215342165 ATCGCATTCT
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
44 28 0.33
45 54 0.63
46 4 0.05
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (44 bp):
AAGATAACAGATTTGGCGTCTCTGTGTTGACAGAGAGCAGATCA
Found at i:215348113 original size:19 final size:20
Alignment explanation
Indices: 215348081--215348119 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
215348071 TAACTCAAAG
215348081 TATAAATATTTTTTCAATTTT
1 TATAAATA-TTTTTCAATTTT
215348102 TATAAATA-TTTTCAATTT
1 TATAAATATTTTTCAATTT
215348120 AAAAAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
TATAAATATTTTTCAATTTT
Found at i:215348156 original size:18 final size:18
Alignment explanation
Indices: 215348105--215348156 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
215348095 CAATTTTTAT
*
215348105 AAATATTTTCAATTTA-AA
1 AAATATTTT-AATTAATAA
* * *
215348123 AAATAATATAAATAATAA
1 AAATATTTTAATTAATAA
215348141 AAATATTTTAATTAAT
1 AAATATTTTAATTAAT
215348157 TTTTGGAGAT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
17 4 0.15
18 22 0.85
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATATTTTAATTAATAA
Found at i:215351855 original size:13 final size:13
Alignment explanation
Indices: 215351837--215351862 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
215351827 CAAAATCATA
215351837 ATTATAATAATTT
1 ATTATAATAATTT
215351850 ATTATAATAATTT
1 ATTATAATAATTT
215351863 CGGTAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:215355216 original size:40 final size:40
Alignment explanation
Indices: 215355161--215355370 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
215355151 AACATTGGAA
215355161 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
215355201 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
215355241 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
215355281 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
215355320 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
215355361 CTATATCCGG
1 ATATATCCGG
215355371 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:215363349 original size:40 final size:40
Alignment explanation
Indices: 215363294--215363503 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
215363284 AACATTGGAA
215363294 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
215363334 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
215363374 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
215363414 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
215363453 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
215363494 CTATATCCGG
1 ATATATCCGG
215363504 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:215370866 original size:40 final size:40
Alignment explanation
Indices: 215370770--215370948 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
215370760 CGAATGGTGT
* * * *
215370770 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
215370811 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
215370851 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
215370891 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
215370931 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
215370949 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
40 89 0.78
41 25 0.22
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:215370909 original size:80 final size:80
Alignment explanation
Indices: 215370770--215370962 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
215370760 CGAATGGTGT
* * * *
215370770 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
215370835 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * * *
215370851 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
215370915 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * *
215370931 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
215370963 CGCTATATCC
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 68 0.72
81 25 0.27
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:215370969 original size:40 final size:40
Alignment explanation
Indices: 215370891--215370974 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
215370881 GTTATTAAAT
* * *
215370891 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
215370931 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
215370971 CCGG
1 CCGG
215370975 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:215387273 original size:64 final size:64
Alignment explanation
Indices: 215387077--215387298 Score: 232
Period size: 64 Copynumber: 3.4 Consensus size: 64
215387067 CATAATTTTG
* * * * * *
215387077 GCTCTCTTGTAC-ACATGGTGAACACTTACTACCACCCACGTGACCTAGCCAC-TTTATCTCGTA
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCAACATTTATCTCGTA
* * * * * * * *
215387140 GCTCTCTTGTTTACATGGTGTCCTTCACTTGGAACCACACATGCAACCTAGCAACATTTATCTCA
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCAACATTTATCTCG
215387205 TA
63 TA
* * *
215387207 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATATATCTCGTA
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCAACATTTATCTCGTA
215387271 GCTCTCTTGTCTACATGGTGTACTACAT
1 GCTCTCTTGTCTACATGGTGTAC-ACAT
215387299 GGGAAACACA
Statistics
Matches: 130, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
63 18 0.14
64 57 0.44
65 4 0.03
66 22 0.17
67 29 0.22
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCAACATTTATCTCGTA
Found at i:215392777 original size:31 final size:31
Alignment explanation
Indices: 215392741--215392838 Score: 109
Period size: 31 Copynumber: 3.4 Consensus size: 31
215392731 TTGCATTCAC
* *
215392741 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
215392772 ATTCTGATTCTAATTCTGTCACCT-A-A-T-
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
* *
215392799 -TT-TTATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
215392828 ATTCTGATTCT
1 ATTCTGATTCT
215392839 CATTTTGATT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
25 18 0.33
26 3 0.06
28 2 0.04
29 1 0.02
30 3 0.06
31 27 0.50
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:215392780 original size:6 final size:6
Alignment explanation
Indices: 215392741--215392859 Score: 57
Period size: 6 Copynumber: 19.3 Consensus size: 6
215392731 TTGCATTCAC
* * *
215392741 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
215392790 -TCACCTA ATTTTT ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
215392840 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
215392860 AATGTTTCTT
Statistics
Matches: 83, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
5 5 0.06
6 66 0.80
7 9 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:215392806 original size:25 final size:25
Alignment explanation
Indices: 215392772--215392838 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
215392762 CCTGATACTG
*
215392772 ATTCTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
* * *
215392797 ATTTTTATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
215392822 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
215392839 CATTTTGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.19, C:0.21, G:0.10, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:215396923 original size:114 final size:114
Alignment explanation
Indices: 215396701--215396966 Score: 336
Period size: 114 Copynumber: 2.3 Consensus size: 114
215396691 ATGCTGGAAT
* * * *
215396701 TATATCCGGGTTAAATCCCACAAGCTTTGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATCCGGGTTAAATCCCGCAGGCTT
* * * *
215396766 CGTGCTGGAATTATATCCGGGTTAAATCCCACAGGCTTCGTGTTGGTAA
66 CATGCTAGAATTATATCCGGGTTAAATCCCACAGGCCTAGTGTTGGTAA
*
215396815 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAG-AATTATATCTGGGTTAAATCCCGCAGGCT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAA-TATATCCGGGTTAAATCCCGCAGGCT
*** *
215396879 TCATGCTAGAATTATATCCGGGTTAAATCCTGTAGGCCTAGTGTTGGTAT
65 TCATGCTAGAATTATATCCGGGTTAAATCCCACAGGCCTAGTGTTGGTAA
* * * * *
215396929 TATATCTGAGCTTAAAGTCTCGCAGGCTTAGTTCTAGT
1 TATATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTAGT
215396967 GACTGGACTC
Statistics
Matches: 130, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
113 2 0.02
114 105 0.81
115 6 0.05
116 17 0.13
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (114 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATCCGGGTTAAATCCCGCAGGCTT
CATGCTAGAATTATATCCGGGTTAAATCCCACAGGCCTAGTGTTGGTAA
Found at i:215396934 original size:38 final size:38
Alignment explanation
Indices: 215396663--215396908 Score: 327
Period size: 38 Copynumber: 6.4 Consensus size: 38
215396653 ATTTGATGTG
* *
215396663 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
* * *
215396703 TATCCGGGTTAAATCCCACAAGCTTTGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
215396741 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* *
215396779 TATCCGGGTTAAATCCCACAGGCTTCGTGTTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
*
215396817 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGAATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
215396855 TATCTGGGTTAAATCCCGCAGGCTTCATGCTAGAATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
215396893 TATCCGGGTTAAATCC
1 TATCCGGGTTAAATCC
215396909 TGTAGGCCTA
Statistics
Matches: 186, Mismatches: 15, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
37 5 0.03
38 164 0.88
39 9 0.05
40 8 0.04
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:215397096 original size:19 final size:20
Alignment explanation
Indices: 215397071--215397115 Score: 83
Period size: 19 Copynumber: 2.3 Consensus size: 20
215397061 TGTATGATAC
215397071 ATTATGATGGCCAGGTACGT
1 ATTATGATGGCCAGGTACGT
215397091 -TTATGATGGCCAGGTACGT
1 ATTATGATGGCCAGGTACGT
215397110 ATTATG
1 ATTATG
215397116 TACTCGTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.33
Consensus pattern (20 bp):
ATTATGATGGCCAGGTACGT
Found at i:215405511 original size:8 final size:7
Alignment explanation
Indices: 215402000--215405516 Score: 6337
Period size: 7 Copynumber: 501.4 Consensus size: 7
215401990 NNNNNNNNNN
215402000 ACCCTAA
1 ACCCTAA
215402007 ACCCTAA
1 ACCCTAA
215402014 ACCCTAA
1 ACCCTAA
215402021 ACCCTAA
1 ACCCTAA
215402028 ACCCTAA
1 ACCCTAA
215402035 ACCCTAA
1 ACCCTAA
215402042 ACCCTAAA
1 ACCCT-AA
215402050 ACCCTAA
1 ACCCTAA
215402057 ACCCTAA
1 ACCCTAA
215402064 ACCCTAA
1 ACCCTAA
215402071 ACCCTAA
1 ACCCTAA
215402078 ACCCTAA
1 ACCCTAA
215402085 ACCCTAA
1 ACCCTAA
215402092 ACCCTAA
1 ACCCTAA
215402099 ACCCTAA
1 ACCCTAA
215402106 ACCCTAA
1 ACCCTAA
215402113 ACCCTAA
1 ACCCTAA
215402120 ACCCTAA
1 ACCCTAA
215402127 ACCCTAA
1 ACCCTAA
215402134 ACCCTAA
1 ACCCTAA
215402141 ACCCTAAA
1 ACCCT-AA
215402149 ACCCTAA
1 ACCCTAA
215402156 ACCCTAA
1 ACCCTAA
215402163 ACCCTAA
1 ACCCTAA
215402170 ACCCTAA
1 ACCCTAA
215402177 ACCCTAA
1 ACCCTAA
215402184 ACCCTAA
1 ACCCTAA
215402191 ACCCTAA
1 ACCCTAA
215402198 ACCCTAA
1 ACCCTAA
215402205 ACCCTAA
1 ACCCTAA
215402212 ACCCTAAA
1 ACCCT-AA
215402220 ACCCTAAA
1 ACCCT-AA
215402228 ACCCTAA
1 ACCCTAA
215402235 ACCCTAA
1 ACCCTAA
215402242 ACCCT-A
1 ACCCTAA
215402248 ACCCTAA
1 ACCCTAA
215402255 ACCCTAA
1 ACCCTAA
215402262 ACCCTAA
1 ACCCTAA
215402269 ACCCTAA
1 ACCCTAA
215402276 ACCCTAA
1 ACCCTAA
215402283 ACCCTAA
1 ACCCTAA
215402290 ACCCTAA
1 ACCCTAA
215402297 ACCCTAA
1 ACCCTAA
215402304 ACCCTAA
1 ACCCTAA
215402311 ACCCTAA
1 ACCCTAA
215402318 ACCCTAA
1 ACCCTAA
215402325 ACCCTAA
1 ACCCTAA
215402332 ACCCTAA
1 ACCCTAA
215402339 ACCCTAA
1 ACCCTAA
215402346 ACCCTAA
1 ACCCTAA
215402353 ACCCTAA
1 ACCCTAA
215402360 ACCCTAA
1 ACCCTAA
215402367 ACCCTAA
1 ACCCTAA
215402374 ACCCTAA
1 ACCCTAA
215402381 ACCCTAA
1 ACCCTAA
215402388 ACCCTAA
1 ACCCTAA
215402395 ACCCTAA
1 ACCCTAA
215402402 ACCCTAA
1 ACCCTAA
215402409 ACCCTAA
1 ACCCTAA
215402416 ACCCTAA
1 ACCCTAA
215402423 ACCCTAA
1 ACCCTAA
215402430 ACCCTAA
1 ACCCTAA
215402437 ACCCTAA
1 ACCCTAA
215402444 ACCCTAA
1 ACCCTAA
215402451 ACCCTAA
1 ACCCTAA
215402458 ACCCTAA
1 ACCCTAA
215402465 ACCCTAA
1 ACCCTAA
215402472 ACCCTAA
1 ACCCTAA
215402479 ACCCTAA
1 ACCCTAA
215402486 ACCCTAA
1 ACCCTAA
215402493 ACCCTAA
1 ACCCTAA
215402500 ACCCTAA
1 ACCCTAA
215402507 ACCCTAA
1 ACCCTAA
215402514 ACCCTAA
1 ACCCTAA
215402521 ACCCTAA
1 ACCCTAA
215402528 ACCCTAA
1 ACCCTAA
215402535 ACCCTAA
1 ACCCTAA
215402542 ACCCTAA
1 ACCCTAA
215402549 ACCCTAA
1 ACCCTAA
215402556 ACCCTAA
1 ACCCTAA
215402563 ACCCTAA
1 ACCCTAA
215402570 ACCCTAA
1 ACCCTAA
215402577 ACCCTAA
1 ACCCTAA
215402584 ACCCTAA
1 ACCCTAA
215402591 ACCCTAA
1 ACCCTAA
215402598 A-CCT-A
1 ACCCTAA
215402603 ACCCTAA
1 ACCCTAA
215402610 ACCCTAA
1 ACCCTAA
215402617 ACCCTAA
1 ACCCTAA
215402624 ACCCTAA
1 ACCCTAA
215402631 ACCCTAA
1 ACCCTAA
215402638 ACCCTAA
1 ACCCTAA
215402645 ACCCTAA
1 ACCCTAA
215402652 ACCCTAA
1 ACCCTAA
215402659 ACCCTAA
1 ACCCTAA
215402666 ACCCTAA
1 ACCCTAA
215402673 ACCCTAA
1 ACCCTAA
215402680 ACCCTAA
1 ACCCTAA
215402687 ACCCTAA
1 ACCCTAA
215402694 ACCCTAA
1 ACCCTAA
215402701 ACCCTAA
1 ACCCTAA
215402708 ACCCTAA
1 ACCCTAA
215402715 ACCCTAA
1 ACCCTAA
215402722 ACCCTAA
1 ACCCTAA
215402729 ACCCTAA
1 ACCCTAA
215402736 ACCCTAA
1 ACCCTAA
215402743 ACCCTAA
1 ACCCTAA
215402750 ACCCTAA
1 ACCCTAA
215402757 ACCCTAA
1 ACCCTAA
215402764 ACCCTAA
1 ACCCTAA
215402771 ACCCTAA
1 ACCCTAA
215402778 ACCCTAA
1 ACCCTAA
215402785 ACCCTAA
1 ACCCTAA
215402792 ACCCTAA
1 ACCCTAA
215402799 ACCCTAA
1 ACCCTAA
215402806 ACCCTAA
1 ACCCTAA
215402813 ACCCTAA
1 ACCCTAA
215402820 ACCCTAA
1 ACCCTAA
215402827 ACCCTAA
1 ACCCTAA
215402834 ACCCTAA
1 ACCCTAA
215402841 ACCCTAA
1 ACCCTAA
215402848 ACCCTAA
1 ACCCTAA
215402855 ACCCTAA
1 ACCCTAA
215402862 ACCCTAA
1 ACCCTAA
215402869 ACCCTAA
1 ACCCTAA
215402876 ACCCTAA
1 ACCCTAA
215402883 ACCCTAA
1 ACCCTAA
215402890 ACCCTAA
1 ACCCTAA
215402897 ACCCTAA
1 ACCCTAA
215402904 ACCCTAA
1 ACCCTAA
215402911 ACCCTAA
1 ACCCTAA
215402918 ACCCTAA
1 ACCCTAA
215402925 ACCCTAAA
1 ACCCT-AA
215402933 ACCCTAA
1 ACCCTAA
215402940 ACCCTAA
1 ACCCTAA
215402947 ACCCTAA
1 ACCCTAA
215402954 ACCCTAA
1 ACCCTAA
215402961 ACCCTAA
1 ACCCTAA
215402968 ACCCTAA
1 ACCCTAA
215402975 ACCCTAA
1 ACCCTAA
215402982 ACCCTAA
1 ACCCTAA
215402989 ACCCTAA
1 ACCCTAA
215402996 ACCCTAA
1 ACCCTAA
215403003 ACCCTAA
1 ACCCTAA
215403010 ACCCTAA
1 ACCCTAA
215403017 ACCCTAA
1 ACCCTAA
215403024 ACCCTAA
1 ACCCTAA
215403031 ACCCTAA
1 ACCCTAA
215403038 ACCCTAA
1 ACCCTAA
215403045 ACCCTAA
1 ACCCTAA
215403052 ACCCTAA
1 ACCCTAA
215403059 ACCCTAA
1 ACCCTAA
215403066 ACCCTAA
1 ACCCTAA
215403073 ACCCTAA
1 ACCCTAA
215403080 ACCCTAA
1 ACCCTAA
215403087 ACCCTAA
1 ACCCTAA
215403094 ACCCTAA
1 ACCCTAA
215403101 ACCCTAA
1 ACCCTAA
215403108 ACCCTAA
1 ACCCTAA
215403115 ACCCTAA
1 ACCCTAA
215403122 ACCCTAA
1 ACCCTAA
215403129 ACCCTAA
1 ACCCTAA
215403136 ACCCTAA
1 ACCCTAA
215403143 ACCCTAA
1 ACCCTAA
215403150 ACCCTAA
1 ACCCTAA
215403157 ACCCTAA
1 ACCCTAA
215403164 ACCCTAA
1 ACCCTAA
215403171 ACCCTAA
1 ACCCTAA
215403178 ACCCTAA
1 ACCCTAA
215403185 ACCCTAA
1 ACCCTAA
215403192 ACCCTAA
1 ACCCTAA
215403199 ACCCTAA
1 ACCCTAA
215403206 ACCCTAA
1 ACCCTAA
215403213 ACCCTAA
1 ACCCTAA
215403220 ACCCTAA
1 ACCCTAA
215403227 ACCCTAA
1 ACCCTAA
215403234 ACCCTAA
1 ACCCTAA
215403241 ACCCTAAA
1 ACCCT-AA
215403249 ACCCTAA
1 ACCCTAA
215403256 ACCCTAA
1 ACCCTAA
215403263 ACCCTAA
1 ACCCTAA
215403270 ACCCTAA
1 ACCCTAA
215403277 ACCCTAA
1 ACCCTAA
215403284 ACCCTAA
1 ACCCTAA
215403291 ACCCTAA
1 ACCCTAA
215403298 ACCCTAA
1 ACCCTAA
215403305 ACCCTAA
1 ACCCTAA
215403312 ACCCTAA
1 ACCCTAA
215403319 ACCCTAA
1 ACCCTAA
215403326 ACCCTAA
1 ACCCTAA
215403333 ACCCTAA
1 ACCCTAA
215403340 ACCCTAA
1 ACCCTAA
215403347 ACCCTAA
1 ACCCTAA
215403354 ACCCTAA
1 ACCCTAA
215403361 ACCCTAA
1 ACCCTAA
215403368 ACCCTAA
1 ACCCTAA
215403375 ACCCTAA
1 ACCCTAA
215403382 ACCCTAA
1 ACCCTAA
215403389 ACCCTAA
1 ACCCTAA
215403396 ACCCTAA
1 ACCCTAA
215403403 ACCCTAA
1 ACCCTAA
215403410 ACCCTAA
1 ACCCTAA
215403417 ACCCTAA
1 ACCCTAA
215403424 ACCCTAAA
1 ACCCT-AA
215403432 ACCCTAA
1 ACCCTAA
215403439 ACCCTAA
1 ACCCTAA
215403446 ACCCTAA
1 ACCCTAA
215403453 ACCCTAA
1 ACCCTAA
215403460 ACCCTAA
1 ACCCTAA
215403467 ACCCTAA
1 ACCCTAA
215403474 ACCCTAA
1 ACCCTAA
215403481 ACCCTAA
1 ACCCTAA
215403488 ACCCTAA
1 ACCCTAA
215403495 ACCCTAA
1 ACCCTAA
215403502 ACCCTAA
1 ACCCTAA
215403509 ACCCTAA
1 ACCCTAA
215403516 ACCCTAA
1 ACCCTAA
215403523 ACCCTAA
1 ACCCTAA
215403530 ACCCTAA
1 ACCCTAA
215403537 ACCCTAA
1 ACCCTAA
215403544 ACCCTAA
1 ACCCTAA
215403551 ACCCTAA
1 ACCCTAA
215403558 ACCCTAA
1 ACCCTAA
215403565 ACCCTAA
1 ACCCTAA
215403572 ACCCTAA
1 ACCCTAA
215403579 ACCCTAA
1 ACCCTAA
215403586 ACCCTAA
1 ACCCTAA
215403593 ACCCTAA
1 ACCCTAA
215403600 ACCCTAA
1 ACCCTAA
215403607 ACCCTAA
1 ACCCTAA
215403614 ACCCTAA
1 ACCCTAA
215403621 ACCCTAA
1 ACCCTAA
215403628 ACCCTAA
1 ACCCTAA
215403635 ACCCTAA
1 ACCCTAA
215403642 ACCCTAA
1 ACCCTAA
215403649 ACCCTAA
1 ACCCTAA
215403656 ACCCTAA
1 ACCCTAA
215403663 ACCCTAA
1 ACCCTAA
215403670 ACCCTAA
1 ACCCTAA
215403677 ACCCTAA
1 ACCCTAA
215403684 ACCCTAA
1 ACCCTAA
215403691 ACCCTAA
1 ACCCTAA
215403698 ACCCTAA
1 ACCCTAA
215403705 A-CCTAA
1 ACCCTAA
215403711 ACCCTAA
1 ACCCTAA
215403718 ACCCTAA
1 ACCCTAA
215403725 ACCCTAA
1 ACCCTAA
215403732 ACCCTAA
1 ACCCTAA
215403739 ACCCTAA
1 ACCCTAA
215403746 ACCCTAA
1 ACCCTAA
215403753 ACCCTAA
1 ACCCTAA
215403760 ACCCTAA
1 ACCCTAA
215403767 ACCCTAA
1 ACCCTAA
215403774 ACCCTAA
1 ACCCTAA
215403781 ACCCTAA
1 ACCCTAA
215403788 ACCCTAA
1 ACCCTAA
215403795 ACCCTAA
1 ACCCTAA
215403802 ACCCTAA
1 ACCCTAA
215403809 ACCCTAA
1 ACCCTAA
215403816 ACCCTAA
1 ACCCTAA
215403823 ACCCTAA
1 ACCCTAA
215403830 ACCCTAA
1 ACCCTAA
215403837 ACCCTAAA
1 ACCCT-AA
215403845 ACCCTAA
1 ACCCTAA
215403852 ACCCTAA
1 ACCCTAA
215403859 ACCCTAA
1 ACCCTAA
215403866 ACCCTAA
1 ACCCTAA
215403873 ACCCTAA
1 ACCCTAA
215403880 ACCCTAA
1 ACCCTAA
215403887 ACCCTAA
1 ACCCTAA
215403894 ACCCTAA
1 ACCCTAA
215403901 ACCCTAA
1 ACCCTAA
215403908 ACCCTAA
1 ACCCTAA
215403915 ACCCTAA
1 ACCCTAA
215403922 ACCCTAA
1 ACCCTAA
215403929 ACCCTAA
1 ACCCTAA
215403936 ACCCTAA
1 ACCCTAA
215403943 ACCCTAA
1 ACCCTAA
215403950 ACCCTAA
1 ACCCTAA
215403957 ACCCTAA
1 ACCCTAA
215403964 ACCCTAA
1 ACCCTAA
215403971 ACCCTAA
1 ACCCTAA
215403978 ACCCTAA
1 ACCCTAA
215403985 ACCCTAA
1 ACCCTAA
215403992 ACCCTAA
1 ACCCTAA
215403999 ACCCTAA
1 ACCCTAA
215404006 ACCCTAA
1 ACCCTAA
215404013 ACCCTAA
1 ACCCTAA
215404020 ACCCTAA
1 ACCCTAA
215404027 ACCCTAA
1 ACCCTAA
215404034 A-CCTAA
1 ACCCTAA
215404040 ACCCTAA
1 ACCCTAA
215404047 ACCCTAA
1 ACCCTAA
215404054 ACCCTAA
1 ACCCTAA
215404061 ACCCTAA
1 ACCCTAA
215404068 ACCCTAA
1 ACCCTAA
215404075 ACCCTAA
1 ACCCTAA
215404082 ACCCTAA
1 ACCCTAA
215404089 ACCCTAA
1 ACCCTAA
215404096 ACCCTAA
1 ACCCTAA
215404103 ACCCTAA
1 ACCCTAA
215404110 ACCCTAA
1 ACCCTAA
215404117 ACCCTAA
1 ACCCTAA
215404124 ACCCTAA
1 ACCCTAA
215404131 ACCCTAA
1 ACCCTAA
215404138 ACCCTAA
1 ACCCTAA
215404145 ACCCTAA
1 ACCCTAA
215404152 ACCCTAA
1 ACCCTAA
215404159 ACCCTAA
1 ACCCTAA
215404166 ACCCTAA
1 ACCCTAA
215404173 ACCCTAA
1 ACCCTAA
215404180 ACCCTAA
1 ACCCTAA
215404187 ACCCTAA
1 ACCCTAA
215404194 ACCCTAA
1 ACCCTAA
215404201 ACCCTAA
1 ACCCTAA
215404208 ACCCTAA
1 ACCCTAA
215404215 ACCCTAA
1 ACCCTAA
215404222 ACCCT-A
1 ACCCTAA
215404228 ACCCTAA
1 ACCCTAA
215404235 ACCCTAA
1 ACCCTAA
215404242 ACCCTAAA
1 ACCCT-AA
215404250 ACCCTAA
1 ACCCTAA
215404257 ACCCTAA
1 ACCCTAA
215404264 ACCCTAA
1 ACCCTAA
215404271 ACCCTAA
1 ACCCTAA
215404278 ACCCTAA
1 ACCCTAA
215404285 ACCCTAA
1 ACCCTAA
215404292 ACCCTAA
1 ACCCTAA
215404299 ACCCTAA
1 ACCCTAA
215404306 ACCCTAA
1 ACCCTAA
215404313 ACCCTAA
1 ACCCTAA
215404320 ACCCTAA
1 ACCCTAA
215404327 ACCCTAA
1 ACCCTAA
215404334 ACCCTAA
1 ACCCTAA
215404341 ACCCTAA
1 ACCCTAA
215404348 ACCCTAAA
1 ACCCT-AA
215404356 ACCCTAA
1 ACCCTAA
215404363 ACCCTAA
1 ACCCTAA
215404370 ACCCTAA
1 ACCCTAA
215404377 ACCCTAA
1 ACCCTAA
215404384 ACCC-AA
1 ACCCTAA
215404390 ACCCTAA
1 ACCCTAA
215404397 ACCCTAA
1 ACCCTAA
215404404 ACCCTAA
1 ACCCTAA
215404411 ACCCTAA
1 ACCCTAA
215404418 ACCCTAA
1 ACCCTAA
215404425 ACCCTAA
1 ACCCTAA
215404432 ACCCTAA
1 ACCCTAA
215404439 ACCCTAAA
1 ACCCT-AA
215404447 ACCCTAA
1 ACCCTAA
215404454 ACCCTAA
1 ACCCTAA
215404461 ACCCTAA
1 ACCCTAA
215404468 ACCCTAA
1 ACCCTAA
215404475 ACCCTAA
1 ACCCTAA
215404482 ACCCTAA
1 ACCCTAA
215404489 ACCCTAA
1 ACCCTAA
215404496 ACCCTAA
1 ACCCTAA
215404503 ACCCTAA
1 ACCCTAA
215404510 ACCCTAAA
1 ACCCT-AA
215404518 ACCCTAA
1 ACCCTAA
215404525 ACCCTAA
1 ACCCTAA
215404532 ACCCTAA
1 ACCCTAA
215404539 ACCCTAA
1 ACCCTAA
215404546 ACCCTAA
1 ACCCTAA
215404553 ACCCTAA
1 ACCCTAA
215404560 ACCCTAA
1 ACCCTAA
215404567 ACCCTAA
1 ACCCTAA
215404574 ACCCTAA
1 ACCCTAA
215404581 ACCCTAA
1 ACCCTAA
215404588 ACCCTAA
1 ACCCTAA
215404595 ACCCTAAA
1 ACCCT-AA
215404603 ACCCTAAAA
1 ACCCT--AA
215404612 ACCCTAA
1 ACCCTAA
215404619 ACCCTAA
1 ACCCTAA
215404626 ACCCTAA
1 ACCCTAA
215404633 ACCCTAAA
1 ACCCT-AA
215404641 ACCCTAA
1 ACCCTAA
215404648 ACCCTAA
1 ACCCTAA
215404655 ACCCTAA
1 ACCCTAA
215404662 ACCCTAA
1 ACCCTAA
215404669 ACCCTAA
1 ACCCTAA
215404676 ACCCTAA
1 ACCCTAA
215404683 ACCCTAA
1 ACCCTAA
215404690 ACCCTAA
1 ACCCTAA
215404697 ACCCTAAA
1 ACCCT-AA
215404705 ACCCTAA
1 ACCCTAA
215404712 ACCCTAA
1 ACCCTAA
215404719 ACCCTAA
1 ACCCTAA
215404726 ACCCTAA
1 ACCCTAA
215404733 ACCCTAA
1 ACCCTAA
215404740 ACCCTAA
1 ACCCTAA
215404747 ACCCTAA
1 ACCCTAA
215404754 ACCCTAA
1 ACCCTAA
215404761 ACCCTAA
1 ACCCTAA
215404768 ACCCTAA
1 ACCCTAA
215404775 ACCCTAA
1 ACCCTAA
215404782 ACCCTAA
1 ACCCTAA
215404789 ACCCTAA
1 ACCCTAA
215404796 ACCCTAA
1 ACCCTAA
215404803 ACCCTAAA
1 ACCCT-AA
215404811 ACCCTAA
1 ACCCTAA
215404818 ACCCTAA
1 ACCCTAA
215404825 ACCCTAA
1 ACCCTAA
215404832 ACCCTAA
1 ACCCTAA
215404839 ACCCTAA
1 ACCCTAA
215404846 ACCCTAA
1 ACCCTAA
215404853 ACCCTAA
1 ACCCTAA
215404860 ACCCTAA
1 ACCCTAA
215404867 ACCCTAA
1 ACCCTAA
215404874 ACCCTAA
1 ACCCTAA
215404881 ACCCTAA
1 ACCCTAA
215404888 ACCCTAA
1 ACCCTAA
215404895 ACCCTAA
1 ACCCTAA
*
215404902 AACCTAA
1 ACCCTAA
215404909 ACCCTAA
1 ACCCTAA
215404916 ACCCTAAA
1 ACCCT-AA
215404924 ACCCTAA
1 ACCCTAA
215404931 ACCC-AA
1 ACCCTAA
215404937 ACCCTAA
1 ACCCTAA
215404944 ACCCTAA
1 ACCCTAA
215404951 ACCCTAA
1 ACCCTAA
215404958 ACCCTAA
1 ACCCTAA
215404965 ACCC-AA
1 ACCCTAA
215404971 ACCCTAA
1 ACCCTAA
215404978 ACCCTAA
1 ACCCTAA
215404985 ACCCTAA
1 ACCCTAA
*
215404992 ACCCAAA
1 ACCCTAA
215404999 ACCCTAA
1 ACCCTAA
215405006 ACCCTAA
1 ACCCTAA
215405013 ACCCTAA
1 ACCCTAA
215405020 ACCCTAA
1 ACCCTAA
215405027 ACCCTAA
1 ACCCTAA
215405034 ACCCTAAA
1 ACCCT-AA
215405042 ACCCTAA
1 ACCCTAA
215405049 ACCCTAA
1 ACCCTAA
215405056 ACCCTAA
1 ACCCTAA
215405063 ACCCTAA
1 ACCCTAA
215405070 ACCCTAA
1 ACCCTAA
215405077 ACCCTAA
1 ACCCTAA
215405084 ACCCTAAA
1 ACCCT-AA
215405092 ACCCTAA
1 ACCCTAA
215405099 A-CCTAAA
1 ACCCT-AA
215405106 ACCCTAA
1 ACCCTAA
215405113 ACCCTAA
1 ACCCTAA
215405120 ACCCTAA
1 ACCCTAA
215405127 ACCC-AA
1 ACCCTAA
215405133 ACCCTAA
1 ACCCTAA
215405140 ACCC-AA
1 ACCCTAA
215405146 ACCCTAA
1 ACCCTAA
215405153 ACCCTAA
1 ACCCTAA
215405160 ACCCTAA
1 ACCCTAA
215405167 ACCCTAA
1 ACCCTAA
215405174 ACCCTAA
1 ACCCTAA
215405181 ACCCTAA
1 ACCCTAA
215405188 ACCCTAA
1 ACCCTAA
215405195 ACCCTAA
1 ACCCTAA
*
215405202 ACCCCAA
1 ACCCTAA
*
215405209 ACCCCAA
1 ACCCTAA
*
215405216 ACCCAAA
1 ACCCTAA
*
215405223 ACCCCAA
1 ACCCTAA
215405230 ACCCTAA
1 ACCCTAA
215405237 ACCCTAA
1 ACCCTAA
*
215405244 ACCCCAA
1 ACCCTAA
*
215405251 ACCCCAA
1 ACCCTAA
*
215405258 ACCCCAA
1 ACCCTAA
*
215405265 ACCCCAA
1 ACCCTAA
*
215405272 ACCCCAA
1 ACCCTAA
215405279 ACCC-AA
1 ACCCTAA
*
215405285 ACCCCAA
1 ACCCTAA
*
215405292 ACCCCAA
1 ACCCTAA
215405299 ACCC-AA
1 ACCCTAA
*
215405305 ACCCCAA
1 ACCCTAA
*
215405312 ACCCCAA
1 ACCCTAA
* *
215405319 CCCCCAAA
1 -ACCCTAA
*
215405327 ACCCCAA
1 ACCCTAA
215405334 ACCCTAAA
1 ACCCT-AA
215405342 ACCCT-A
1 ACCCTAA
215405348 ACCCTAA
1 ACCCTAA
215405355 ACCCTAA
1 ACCCTAA
215405362 ACCC-AA
1 ACCCTAA
215405368 ACCCTAAA
1 ACCCT-AA
215405376 ACCCTAA
1 ACCCTAA
*
215405383 ACCCCAAA
1 A-CCCTAA
*
215405391 ACAACCCAA
1 AC--CCTAA
215405400 ACCC-AA
1 ACCCTAA
215405406 ACCC-AA
1 ACCCTAA
215405412 ACCCTAAA
1 ACCCT-AA
215405420 ACCCTAA
1 ACCCTAA
*
215405427 ACCCCAA
1 ACCCTAA
*
215405434 A--CGAA
1 ACCCTAA
*
215405439 ACCCCAA
1 ACCCTAA
215405446 ACCCCTAA
1 A-CCCTAA
215405454 ACCC-AA
1 ACCCTAA
215405460 ACCCCTAA
1 A-CCCTAA
215405468 ACCCTAA
1 ACCCTAA
215405475 A-CCTAA
1 ACCCTAA
* *
215405481 GCACT-A
1 ACCCTAA
*
215405487 AGCCT-A
1 ACCCTAA
215405493 ACCCTAA
1 ACCCTAA
215405500 ACCCTAAA
1 ACCCT-AA
215405508 ACCC-AA
1 ACCCTAA
215405514 ACC
1 ACC
215405517 GGCTCCAAAA
Statistics
Matches: 3432, Mismatches: 26, Indels: 105
0.96 0.01 0.03
Matches are distributed among these distances:
5 6 0.00
6 120 0.03
7 3108 0.91
8 184 0.05
9 14 0.00
ACGTcount: A:0.44, C:0.43, G:0.00, T:0.13
Consensus pattern (7 bp):
ACCCTAA
Found at i:215405574 original size:65 final size:65
Alignment explanation
Indices: 215405505--215405628 Score: 146
Period size: 65 Copynumber: 1.9 Consensus size: 65
215405495 CCTAAACCCT
* * *
215405505 AAAACCCAAACCG-GCTCCAA-AAACCCGAACCCGGTTCCCCAAAAA-ACCGAACCGGGTTCCCT
1 AAAAACCAAACCGAG-TCCAATAAACCCGAACCCGGGT-CCCAAAAAGACCGAACAGGGTTCCCT
215405567 TA
64 TA
* * * *
215405569 AAAAACCGAACCGAGTCCAATAAACGCGAACCGGGGTCCCAAAAAGCCCGAACAGGGTTC
1 AAAAACCAAACCGAGTCCAATAAACCCGAACCCGGGTCCCAAAAAGACCGAACAGGGTTC
215405629 ACAAAAACCG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
64 24 0.48
65 26 0.52
ACGTcount: A:0.37, C:0.35, G:0.19, T:0.10
Consensus pattern (65 bp):
AAAAACCAAACCGAGTCCAATAAACCCGAACCCGGGTCCCAAAAAGACCGAACAGGGTTCCCTTA
Found at i:215405581 original size:23 final size:22
Alignment explanation
Indices: 215405521--215405645 Score: 91
Period size: 22 Copynumber: 5.8 Consensus size: 22
215405511 CAAACCGGCT
* *
215405521 CCAAAAACCCGAACCCGGTTCC
1 CCAAAAAACCGAACCGGGTTCC
215405543 CCAAAAAACCGAACCGGGTTCC
1 CCAAAAAACCGAACCGGGTTCC
* *
215405565 CTTAAAAAACCGAACCGAG-T--
1 C-CAAAAAACCGAACCGGGTTCC
* *
215405585 CCAATAAACGCGAACCGGGGT-C
1 CCAAAAAAC-CGAACCGGGTTCC
* *
215405607 CCAAAAAGCCCGAACAGGGTT-C
1 CCAAAAA-ACCGAACCGGGTTCC
* *
215405629 AC-AAAAACCGAATCGGG
1 CCAAAAAACCGAACCGGG
215405646 GTCAATAAAC
Statistics
Matches: 83, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
19 6 0.07
20 17 0.20
21 5 0.06
22 39 0.47
23 16 0.19
ACGTcount: A:0.38, C:0.33, G:0.20, T:0.10
Consensus pattern (22 bp):
CCAAAAAACCGAACCGGGTTCC
Found at i:215405592 original size:22 final size:23
Alignment explanation
Indices: 215405545--215405592 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
215405535 CCGGTTCCCC
* **
215405545 AAAAAACCGAACCGGGTTCCCTT
1 AAAAAACCGAACCGAGTTCCAAT
215405568 AAAAAACCGAACCGAG-TCCAAT
1 AAAAAACCGAACCGAGTTCCAAT
215405590 AAA
1 AAA
215405593 CGCGAACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.46, C:0.27, G:0.15, T:0.12
Consensus pattern (23 bp):
AAAAAACCGAACCGAGTTCCAAT
Found at i:215425725 original size:39 final size:39
Alignment explanation
Indices: 215425660--215425742 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
215425650 CGTGGTGACG
*
215425660 GGTGGACCGATGGTGACTACCAGACTGGTGAACGATGAT
1 GGTGGACCGATGGTGACTACCAGACTGGTGAACGACGAT
* * * *
215425699 GGTGTACCGGTGGTGACTGCCTGACTGGTGAACGACGAT
1 GGTGGACCGATGGTGACTACCAGACTGGTGAACGACGAT
215425738 GGTGG
1 GGTGG
215425743 TGGTCGGTGG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.20, C:0.18, G:0.40, T:0.22
Consensus pattern (39 bp):
GGTGGACCGATGGTGACTACCAGACTGGTGAACGACGAT
Found at i:215428232 original size:12 final size:12
Alignment explanation
Indices: 215428215--215428243 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
215428205 ATCAACTTCA
215428215 AAACATCATACC
1 AAACATCATACC
215428227 AAACATCATACC
1 AAACATCATACC
215428239 AAACA
1 AAACA
215428244 CAGCCCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.55, C:0.31, G:0.00, T:0.14
Consensus pattern (12 bp):
AAACATCATACC
Found at i:215431430 original size:40 final size:40
Alignment explanation
Indices: 215431347--215431497 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 40
215431337 AAATTGAATG
* * * ** *
215431347 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCACT
* * *
215431387 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-CGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTC-ACT
*
215431427 ATATCCGGGCTAAGA-CCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCACT
* *
215431466 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
215431498 ACATGCTTAT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
38 3 0.03
39 29 0.32
40 57 0.63
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCACT
Found at i:215431511 original size:40 final size:39
Alignment explanation
Indices: 215431385--215431513 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 39
215431375 ATGCTGGAAA
* * *
215431385 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
215431426 -TATATCCGGGCTAAGA-CCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
215431463 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
215431504 TTATATCCGG
1 TTATATCCGG
215431514 TTATATTCCG
Statistics
Matches: 73, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
36 1 0.01
37 1 0.01
39 29 0.40
40 39 0.53
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:215439518 original size:40 final size:39
Alignment explanation
Indices: 215439391--215439520 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
215439381 ATGCTGGAAA
* * *
215439391 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
215439432 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
215439470 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
215439511 TTATATCCGG
1 TTATATCCGG
215439521 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:215443441 original size:29 final size:29
Alignment explanation
Indices: 215443408--215443473 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 29
215443398 TCCTTAACTC
215443408 AAACTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTGAAAAATTACAATTTTGCCCCT
* * *
215443437 AAACTTTTGCATATTTACAATTTTGCCCCT
1 AAAC-TTTGAAAAATTACAATTTTGCCCCT
215443467 AAACTTT
1 AAACTTT
215443474 TGCATATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.39
Consensus pattern (29 bp):
AAACTTTGAAAAATTACAATTTTGCCCCT
Found at i:215443457 original size:30 final size:30
Alignment explanation
Indices: 215443421--215443497 Score: 136
Period size: 30 Copynumber: 2.6 Consensus size: 30
215443411 CTTTGAAAAA
215443421 TTACAATTTTGCCCCTAAACTTTTGCATAT
1 TTACAATTTTGCCCCTAAACTTTTGCATAT
215443451 TTACAATTTTGCCCCTAAACTTTTGCATAT
1 TTACAATTTTGCCCCTAAACTTTTGCATAT
* *
215443481 TTACACTTTTTCCCCTA
1 TTACAATTTTGCCCCTA
215443498 GGCTCGGGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.25, C:0.26, G:0.05, T:0.44
Consensus pattern (30 bp):
TTACAATTTTGCCCCTAAACTTTTGCATAT
Found at i:215445193 original size:82 final size:82
Alignment explanation
Indices: 215445098--215445258 Score: 313
Period size: 82 Copynumber: 2.0 Consensus size: 82
215445088 ATATGAGTTT
215445098 GATTTGAACTATTACTGGTATTTACATGAAATATGATTATTTGATGAATTCAACCATGTGTGTTG
1 GATTTGAACTATTACTGGTATTTACATGAAATATGATTATTTGATGAATTCAACCATGTGTGTTG
215445163 GATCTTGTGATTTTTTC
66 GATCTTGTGATTTTTTC
*
215445180 GATTTGAACTATTACTGGTCTTTACATGAAATATGATTATTTGATGAATTCAACCATGTGTGTTG
1 GATTTGAACTATTACTGGTATTTACATGAAATATGATTATTTGATGAATTCAACCATGTGTGTTG
215445245 GATCTTGTGATTTT
66 GATCTTGTGATTTT
215445259 CATGGCTAAT
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 78 1.00
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.45
Consensus pattern (82 bp):
GATTTGAACTATTACTGGTATTTACATGAAATATGATTATTTGATGAATTCAACCATGTGTGTTG
GATCTTGTGATTTTTTC
Found at i:215450746 original size:6 final size:6
Alignment explanation
Indices: 215450735--215450791 Score: 114
Period size: 6 Copynumber: 9.5 Consensus size: 6
215450725 TAAATAAAGG
215450735 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
215450783 AAAATA AAA
1 AAAATA AAA
215450792 GGGACTCAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 51 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:215455426 original size:13 final size:13
Alignment explanation
Indices: 215455410--215455434 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
215455400 TTAAATCAGT
215455410 TAATTAGTTTAAA
1 TAATTAGTTTAAA
215455423 TAATTAGTTTAA
1 TAATTAGTTTAA
215455435 TAAATAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:215460088 original size:9 final size:9
Alignment explanation
Indices: 215460074--215460110 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
215460064 TATAGTTTGA
215460074 TATTCGAAT
1 TATTCGAAT
*
215460083 TATTCGATT
1 TATTCGAAT
*
215460092 TATTCGAGT
1 TATTCGAAT
215460101 TATTCGAAT
1 TATTCGAAT
215460110 T
1 T
215460111 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:215460176 original size:9 final size:9
Alignment explanation
Indices: 215460162--215460194 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
215460152 ATTCGAGTTG
215460162 ACTCGAATA
1 ACTCGAATA
*
215460171 ACTCGATTA
1 ACTCGAATA
215460180 ACTCGAATA
1 ACTCGAATA
215460189 ACTCGA
1 ACTCGA
215460195 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:215460185 original size:18 final size:18
Alignment explanation
Indices: 215460162--215460196 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
215460152 ATTCGAGTTG
215460162 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
215460180 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
215460197 CGTTTAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:215462494 original size:12 final size:12
Alignment explanation
Indices: 215462477--215462503 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
215462467 TGCGAAAATC
215462477 AAACTCTAAAAA
1 AAACTCTAAAAA
215462489 AAACTCTAAAAA
1 AAACTCTAAAAA
215462501 AAA
1 AAA
215462504 ACCCTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.15, G:0.00, T:0.15
Consensus pattern (12 bp):
AAACTCTAAAAA
Found at i:215462500 original size:13 final size:13
Alignment explanation
Indices: 215462477--215462511 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
215462467 TGCGAAAATC
215462477 AAACTCT-AAAAA
1 AAACTCTAAAAAA
215462489 AAACTCTAAAAAA
1 AAACTCTAAAAAA
*
215462502 AAACCCTAAA
1 AAACTCTAAA
215462512 TTCATCAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 7 0.33
13 14 0.67
ACGTcount: A:0.66, C:0.20, G:0.00, T:0.14
Consensus pattern (13 bp):
AAACTCTAAAAAA
Found at i:215469195 original size:46 final size:46
Alignment explanation
Indices: 215469145--215469273 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
215469135 TGGTTGAGCA
*
215469145 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
215469191 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
215469237 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
215469274 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:215476245 original size:46 final size:46
Alignment explanation
Indices: 215476195--215476370 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
215476185 TGGTTGAGCA
215476195 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
215476241 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
215476286 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
215476334 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
215476371 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:215476351 original size:93 final size:93
Alignment explanation
Indices: 215476192--215476363 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
215476182 GGATGGTTGA
* *
215476192 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
215476257 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
215476285 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
215476350 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
215476364 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:215483350 original size:46 final size:46
Alignment explanation
Indices: 215483300--215483475 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
215483290 TGGTTGAGCA
215483300 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
215483346 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
215483391 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
215483439 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
215483476 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:215483456 original size:93 final size:93
Alignment explanation
Indices: 215483297--215483468 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
215483287 GGATGGTTGA
* *
215483297 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
215483362 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
215483390 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
215483455 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
215483469 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:215487848 original size:40 final size:39
Alignment explanation
Indices: 215487683--215487866 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
215487673 AAATTGAATG
* * *
215487683 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
215487723 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
215487763 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
215487803 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
215487842 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
215487867 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:215487891 original size:80 final size:81
Alignment explanation
Indices: 215487723--215487911 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
215487713 GCTGGAAATT
* * * *
215487723 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
215487788 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
215487804 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
215487867 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
215487883 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
215487912 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:215489439 original size:42 final size:41
Alignment explanation
Indices: 215489318--215489439 Score: 154
Period size: 43 Copynumber: 2.9 Consensus size: 41
215489308 TACAATACCA
*
215489318 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACAT-GAATCTCATATCG
* * * *
215489360 ATGCCAAGAGCCCAGCTATGGTCTTGCATGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAA-TCTCATATCG
*
215489403 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATG-AATCTCA
215489440 ACTAACCCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 31 0.46
43 36 0.54
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACATGAATCTCATATCG
Found at i:215490485 original size:13 final size:13
Alignment explanation
Indices: 215490467--215490491 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
215490457 GCCCAAACGT
215490467 CAAAATTTTCAAA
1 CAAAATTTTCAAA
215490480 CAAAATTTTCAA
1 CAAAATTTTCAA
215490492 GAAATCATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (13 bp):
CAAAATTTTCAAA
Found at i:215491208 original size:28 final size:28
Alignment explanation
Indices: 215491176--215491229 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
215491166 AAACACAATC
215491176 ACAAAACAAATTTTTAGAGAAGACTTCT
1 ACAAAACAAATTTTTAGAGAAGACTTCT
215491204 ACAAAACAAATTTTTAGAGAAGACTT
1 ACAAAACAAATTTTTAGAGAAGACTT
215491230 ACTTTCAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (28 bp):
ACAAAACAAATTTTTAGAGAAGACTTCT
Found at i:215495490 original size:43 final size:42
Alignment explanation
Indices: 215495424--215495582 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
215495414 AGCTCGTACA
** *
215495424 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCAAATAT-G
* * **
215495467 ATGCCACTATCCCAGACAAGGTCTTACACAAAATCAAATATG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCAAATATG
* *
215495509 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCATAAGTCA--
1 ATGCCAATATCCCAGACATGGTCTTACACGT-AATCA-AA-T-ATG
* * *
215495553 ATGCCAACATCCTAGACGTGGTCTTACACG
1 ATGCCAATATCCCAGACATGGTCTTACACG
215495583 AAAACACATA
Statistics
Matches: 94, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 26 0.28
43 39 0.41
44 27 0.29
45 1 0.01
46 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (42 bp):
ATGCCAATATCCCAGACATGGTCTTACACGTAATCAAATATG
Found at i:215498187 original size:27 final size:27
Alignment explanation
Indices: 215498108--215498275 Score: 133
Period size: 27 Copynumber: 6.2 Consensus size: 27
215498098 GAAATCAAAT
* * *
215498108 AGAGTATGCCACTAAGGCGATCCATTTC
1 AGAGTTTGCCACAAAGGCTATCC-TTTC
** *
215498136 -GAGTTCACCACAAAGAGAT-TCCTTTC
1 AGAGTTTGCCACAAAG-GCTATCCTTTC
* * *
215498162 AAATTTTGCCACAAAGGCTATTCTTTC
1 AGAGTTTGCCACAAAGGCTATCCTTTC
* * * * *
215498189 AGAGTTTCCCACAAGGGTTATTCTTTT
1 AGAGTTTGCCACAAAGGCTATCCTTTC
* * * *
215498216 AGAGTTCGCCACAGAGGTTATCCTTTT
1 AGAGTTTGCCACAAAGGCTATCCTTTC
*
215498243 AGAGTTTGCCATAAAGGCTATCCTTTC
1 AGAGTTTGCCACAAAGGCTATCCTTTC
215498270 AGAGTT
1 AGAGTT
215498276 CACTATGAAG
Statistics
Matches: 109, Mismatches: 28, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
26 6 0.06
27 102 0.94
28 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (27 bp):
AGAGTTTGCCACAAAGGCTATCCTTTC
Found at i:215500104 original size:40 final size:40
Alignment explanation
Indices: 215500039--215500205 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
215500029 TGGAATATAA
* *
215500039 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAAC-TAGCACAATTGCCTTCGGGTCTTAGC
*
215500079 CCGGATAGAATAACTAGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTAGCAC-AATTGCCTTCGGGTCTTAGC
* *** *
215500119 CCGGACATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
** * * *
215500159 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
215500198 CCGGATAT
1 CCGGATAT
215500206 CATTCAATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 16 0.15
40 89 0.83
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATAACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:215500189 original size:80 final size:79
Alignment explanation
Indices: 215500055--215500202 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 79
215500045 ATAATCACGT
* *
215500055 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTAGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCACGAATGCCTTCGGG-CTTAGCC
215500120 CGGACATAGCCACTA
65 CGGACATAGCCACTA
* * ** * *
215500135 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCA-TAATTGTCTTCGGGCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCACGAA-TGCCTTCGGGCTTAGCC
215500199 CGGA
65 CGGA
215500203 TATCATTCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
79 13 0.22
80 46 0.78
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCACGAATGCCTTCGGGCTTAGCCC
GGACATAGCCACTA
Found at i:215504903 original size:24 final size:24
Alignment explanation
Indices: 215504564--215504901 Score: 579
Period size: 24 Copynumber: 14.1 Consensus size: 24
215504554 GCAAAGACCA
*
215504564 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
215504588 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
215504612 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
215504636 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
215504660 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
215504684 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
215504708 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
215504732 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
215504756 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
215504780 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
215504804 TATGGCACTACGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
215504828 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
215504852 TAT-GCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
215504875 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
215504899 TAT
1 TAT
215504902 AGTCACATTC
Statistics
Matches: 303, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
23 22 0.07
24 281 0.93
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:215512208 original size:24 final size:24
Alignment explanation
Indices: 215511867--215512206 Score: 565
Period size: 24 Copynumber: 14.1 Consensus size: 24
215511857 GCAAAGACCA
*
215511867 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
215511891 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
215511915 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
215511939 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
215511963 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
215511987 TAT-GCAACTATGTGTGCGATTTAC
1 TATGGC-ACTATGTGTGCGATTTAC
*
215512011 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
215512035 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
215512059 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
215512083 TATGGCACTATGTGTGCGATTTTAC
1 TATGGCACTATGTGTGCGA-TTTAC
*
215512108 TATGGCACTACGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
215512132 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
215512156 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
215512180 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
215512204 TAT
1 TAT
215512207 AGTCACATTC
Statistics
Matches: 302, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
23 2 0.01
24 276 0.91
25 24 0.08
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:215517489 original size:46 final size:46
Alignment explanation
Indices: 215517439--215517611 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
215517429 TGGTTGAGCA
*
215517439 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
215517485 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
215517532 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
215517578 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
215517612 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 62 0.58
47 29 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:215517595 original size:93 final size:93
Alignment explanation
Indices: 215517436--215517606 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
215517426 GGATGGTTGA
* *
215517436 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
215517501 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
215517529 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
215517594 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
215517607 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:215521110 original size:40 final size:40
Alignment explanation
Indices: 215521066--215521176 Score: 147
Period size: 40 Copynumber: 2.8 Consensus size: 40
215521056 ATAACCACGT
*
215521066 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAA-GCACTA
*
215521106 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTA
*
215521146 GCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
215521177 TAATTTCCAG
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 59 0.92
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTA
Found at i:215521194 original size:40 final size:40
Alignment explanation
Indices: 215521050--215521213 Score: 136
Period size: 40 Copynumber: 4.1 Consensus size: 40
215521040 CGGAATACAA
* **
215521050 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
215521090 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
215521130 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * * *
215521170 CCGGATATAATTTCCAGCATAATTGTCTTTGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
215521210 CCGG
1 CCGG
215521214 GTATCATTCA
Statistics
Matches: 99, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 97 0.98
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:215530062 original size:28 final size:28
Alignment explanation
Indices: 215529997--215530097 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
215529987 ATAGTGAATC
*
215529997 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
215530026 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
215530054 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
215530084 CGCACACTTAGTGC
1 CGCACACTTAGTGC
215530098 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:215554655 original size:48 final size:48
Alignment explanation
Indices: 215554526--215554853 Score: 550
Period size: 48 Copynumber: 6.9 Consensus size: 48
215554516 TATATATGTG
215554526 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
215554574 TGTGGTAAAG-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
215554621 TGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTGTA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
215554669 TGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAGATATATATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
215554717 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
215554765 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
215554813 TTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
215554854 GTGTGTATAT
Statistics
Matches: 260, Mismatches: 19, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
47 47 0.18
48 213 0.82
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:215555048 original size:37 final size:37
Alignment explanation
Indices: 215554994--215555095 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
215554984 GGAAATATAT
215554994 TCCGGGTAA-ACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
215555030 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
215555067 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
215555096 GACTATTCGA
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
36 9 0.14
37 54 0.86
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:215556428 original size:40 final size:40
Alignment explanation
Indices: 215556370--215556655 Score: 455
Period size: 40 Copynumber: 7.2 Consensus size: 40
215556360 GAGAATTGAG
215556370 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
215556410 AGCGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
215556450 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
215556490 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
215556530 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
215556570 AGAGTTATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
215556610 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
215556650 GGTGAT
1 AGTGAT
215556656 GTGTATTCGG
Statistics
Matches: 228, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 228 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:215556867 original size:25 final size:25
Alignment explanation
Indices: 215556817--215556867 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
215556807 TGTGTAACAA
* *
215556817 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
215556842 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
215556867 C
1 C
215556868 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:215562058 original size:40 final size:40
Alignment explanation
Indices: 215561827--215562051 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
215561817 TCGAATGATG
* * * *
215561827 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* **
215561867 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
215561907 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
215561947 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
215561987 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
215562027 -CCGGGCTATGTCCCGAAGACATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
215562052 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 124 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:215562081 original size:79 final size:79
Alignment explanation
Indices: 215561840--215562084 Score: 248
Period size: 79 Copynumber: 3.1 Consensus size: 79
215561830 GGGCTAAGTC
* * * * * * **
215561840 CCGAAGGC-TTTGTGCTAAGTGACTATATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC
1 CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGACATTTGAACGAGTTAC
*
215561903 TAAATCCGGGTTAAGT
64 TAAATCCGGGTTAACT
* * * **
215561919 CCCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 -CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGACATTTGAACGAGTTACT
*
215561984 AAATCCGGGTTAAGT
65 AAATCCGGGTTAACT
*
215561999 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGACATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGACATTTGAACGAGTTA-C
*
215562062 TATATCC-GGTTAAACT
64 TAAATCCGGGTT-AACT
215562078 CCGAAGG
1 CCGAAGG
215562085 TACGTGATTC
Statistics
Matches: 145, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
78 6 0.04
79 68 0.47
80 64 0.44
81 7 0.05
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGACATTTGAACGAGTTACTA
AATCCGGGTTAACT
Found at i:215570927 original size:28 final size:29
Alignment explanation
Indices: 215570860--215570960 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
215570850 ATAGTGAATC
*
215570860 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
215570889 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
215570917 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
215570947 CGCACACTTAGTGC
1 CGCACACTTAGTGC
215570961 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:215578732 original size:28 final size:29
Alignment explanation
Indices: 215578665--215578765 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
215578655 ATAGTGAATC
*
215578665 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
215578694 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
215578722 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
215578752 CGCACACTTAGTGC
1 CGCACACTTAGTGC
215578766 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:215583395 original size:40 final size:40
Alignment explanation
Indices: 215583345--215583542 Score: 287
Period size: 40 Copynumber: 5.0 Consensus size: 40
215583335 TGCCCGGTTA
*
215583345 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATT
215583385 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
215583425 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
*
215583465 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
215583505 TAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
215583543 CATCATTCGA
Statistics
Matches: 149, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
39 3 0.02
40 134 0.90
41 12 0.08
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:215590445 original size:28 final size:29
Alignment explanation
Indices: 215590405--215590503 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
215590395 GTAATAAGCC
*
215590405 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
215590433 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
215590461 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
215590490 CGCACACTTAGTGC
1 CGCACACTTAGTGC
215590504 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:215594528 original size:39 final size:40
Alignment explanation
Indices: 215594413--215594608 Score: 260
Period size: 40 Copynumber: 5.0 Consensus size: 40
215594403 CATAGGGTTA
*
215594413 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATT
*
215594453 TAGTAACTCGCACAAATGCCTTTGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
215594493 TAGTAACTCGCACAAATGCCTT-GGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
*
215594532 TAGTAACTCGCACAAATGCCTTCGGCTCTTAGTCCGGA-T
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
215594571 TAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
215594609 CATCATTCGA
Statistics
Matches: 144, Mismatches: 7, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
39 65 0.45
40 78 0.54
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.28
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:215594545 original size:79 final size:78
Alignment explanation
Indices: 215594413--215594608 Score: 263
Period size: 79 Copynumber: 2.5 Consensus size: 78
215594403 CATAGGGTTA
* *
215594413 TAGTAGCTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTTGG
1 TAGTAACTCGCACAAATGCCTTC-GGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGG
215594478 ATCTTAGTCCGGATT
65 ATCTTAGTCCGGA-T
215594493 TAGTAACTCGCACAAATGCCTT-GGATCTTAGT-CCGGATTTAGTAACTCGCACAAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTA-TCCCGGATTTAGTAACTCGCACAAATGCCTTCG
*
215594556 GCTCTTAGTCCGGAT
64 GATCTTAGTCCGGAT
* * *
215594571 TAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGACTTATCCCGGA
215594609 CATCATTCGA
Statistics
Matches: 104, Mismatches: 6, Indels: 13
0.85 0.05 0.11
Matches are distributed among these distances:
78 15 0.14
79 64 0.62
80 25 0.24
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.28
Consensus pattern (78 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTATCCCGGATTTAGTAACTCGCACAAATGCCTTCGGA
TCTTAGTCCGGAT
Found at i:215598718 original size:2 final size:2
Alignment explanation
Indices: 215598711--215598743 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
215598701 TCGATCGGAG
*
215598711 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
215598744 GAGTACGCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:215598868 original size:29 final size:29
Alignment explanation
Indices: 215598836--215598908 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
215598826 CTTCGAGCTC
*
215598836 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
215598865 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
215598894 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
215598909 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:215606659 original size:2 final size:2
Alignment explanation
Indices: 215606652--215606688 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
215606642 TCGATCGGAG
* *
215606652 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
215606689 GAGTACGCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (2 bp):
AT
Found at i:215606813 original size:29 final size:29
Alignment explanation
Indices: 215606781--215606853 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
215606771 CTTCGAGCTC
*
215606781 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
215606810 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
215606839 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
215606854 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:215614282 original size:93 final size:93
Alignment explanation
Indices: 215614170--215614341 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
215614160 CGCCCATAAG
* *
215614170 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
215614235 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
215614263 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
215614328 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
215614342 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:215614338 original size:46 final size:46
Alignment explanation
Indices: 215614163--215614338 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
215614153 TGTAACCCGC
* * *
215614163 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
215614209 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
215614259 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
215614302 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
215614339 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:215615367 original size:40 final size:40
Alignment explanation
Indices: 215615311--215615575 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
215615301 GAATGATACC
* * *
215615311 CGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATT
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATT
*
215615351 CGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGTTATA-T
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATT
* *
215615390 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATC
1 C-GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATT
*
215615431 CGGGCTAAGACCCGAAGGCATTTGT--GAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATT
215615469 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATA-T
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATT
* **
215615508 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACC
1 C-GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATT
* *
215615549 CGGGTTAAGACCCGAAGGCAATTGTGC
1 CGGGCTAAGACCCGAAGGCATTTGTGC
215615576 TTGTGGTTAT
Statistics
Matches: 205, Mismatches: 13, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
38 38 0.19
39 3 0.01
40 160 0.78
41 4 0.02
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATT
Found at i:215615447 original size:80 final size:80
Alignment explanation
Indices: 215615310--215615595 Score: 400
Period size: 80 Copynumber: 3.6 Consensus size: 80
215615300 TGAATGATAC
* * * * *
215615310 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATTCGGGCTAAGACTCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
215615374 GTGCGAGTTGTTATAT
65 GTGCGAGTTGTTATAT
* *
215615390 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
215615455 T--GAGTTGTTATAT
66 TGCGAGTTGTTATAT
*
215615468 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCTGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
* *
215615533 TGCGAGTTGCTATAC
66 TGCGAGTTGTTATAT
* * ** *
215615548 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAA
215615596 ATTCCGAAGA
Statistics
Matches: 185, Mismatches: 18, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
78 75 0.41
79 6 0.03
80 102 0.55
81 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGTTATAT
Found at i:215615520 original size:118 final size:119
Alignment explanation
Indices: 215615306--215615595 Score: 433
Period size: 118 Copynumber: 2.4 Consensus size: 119
215615296 CATTTGAATG
* * * *
215615306 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATTCGGGCTAAGACTCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTGATTATATCCGGGCTAAGACCCGAAGGCA
*
215615371 TTTGTGCGAGTTGTTATATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
65 TTTGTGCGAGTTGTTATATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
*
215615426 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-AGTTG-TTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGCAG-TGATTATATCCGGGCTAAGACCCGAAGGCA
*
215615489 TTTGTGCGAGTTGTTATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
65 TTTGTGCGAGTTGTTATATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
* * * *
215615544 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTGATTATATCCGGGCTAA
215615596 ATTCCGAAGA
Statistics
Matches: 155, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
118 108 0.70
119 10 0.06
120 37 0.24
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (119 bp):
ATACCCGGGCTAAGACCCGAAGGCATTTGTGCAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGTTATATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
Done.