Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr14 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 244914714 ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31 Warning! 4503000 characters in sequence are not A, C, G, or T File 684 of 770 Found at i:215623634 original size:40 final size:40 Alignment explanation
Indices: 215623579--215623826 Score: 374 Period size: 40 Copynumber: 6.2 Consensus size: 40 215623569 TGAATGATAC * * * 215623579 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT 215623619 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT * 215623659 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT 215623699 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT * * 215623739 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT * * ** * 215623779 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT 215623819 CC-GGCTAA 1 CCGGGCTAA 215623827 ATTCCGAAGA Statistics Matches: 192, Mismatches: 15, Indels: 3 0.91 0.07 0.01 Matches are distributed among these distances: 39 5 0.03 40 185 0.96 41 2 0.01 ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27 Consensus pattern (40 bp): CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT Found at i:215627424 original size:40 final size:39 Alignment explanation
Indices: 215627378--215627475 Score: 142 Period size: 40 Copynumber: 2.5 Consensus size: 39 215627368 ATTTCAATTC * 215627378 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT 1 CCGAAGGCATTTGTGCGAGTTACCAAATCCGGACTAAG-T * * ** 215627418 CCGAAGGCATTTGTACGAGTTCCCAAATCCGGGTTAAGT 1 CCGAAGGCATTTGTGCGAGTTACCAAATCCGGACTAAGT 215627457 CCGAAGGCATTTGTGCGAG 1 CCGAAGGCATTTGTGCGAG 215627476 CTATTATAAC Statistics Matches: 52, Mismatches: 6, Indels: 1 0.88 0.10 0.02 Matches are distributed among these distances: 39 19 0.37 40 33 0.63 ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24 Consensus pattern (39 bp): CCGAAGGCATTTGTGCGAGTTACCAAATCCGGACTAAGT Found at i:215629341 original size:38 final size:39 Alignment explanation
Indices: 215629221--215629404 Score: 274 Period size: 38 Copynumber: 4.9 Consensus size: 39 215629211 AATGTTCGAG 215629221 TGATATCC-GGCTAAGCCCGAAGGCAATTGTGCGA---A 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA 215629256 TGATA-CCGGGCTAAG-CCGAAGGCAATTGTGCGAGCTA 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA 215629293 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA * * 215629332 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA * * 215629370 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG 1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG 215629405 GGTTACCATA Statistics Matches: 137, Mismatches: 4, Indels: 11 0.90 0.03 0.07 Matches are distributed among these distances: 34 20 0.15 35 12 0.09 37 6 0.04 38 46 0.34 39 36 0.26 40 17 0.12 ACGTcount: A:0.25, C:0.22, G:0.32, T:0.22 Consensus pattern (39 bp): TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA Found at i:215629376 original size:77 final size:73 Alignment explanation
Indices: 215629220--215629404 Score: 282 Period size: 77 Copynumber: 2.5 Consensus size: 73 215629210 GAATGTTCGA 215629220 GTGATATCC-GGCTAAGCCCGAAGGCAATTGTGCGAATGATACCGGGCTAAGCCGAAGGCAATTG 1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATGATACCGGGCTAAGCCGAAGGCAATTG 215629284 TGCGAGCT 66 TGCGAGCT * 215629292 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCA 1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGA---ATGATACCGGGCTAAG-CCGAAGGCA * 215629357 ATTGTGCGAGTT 62 ATTGTGCGAGCT * * 215629369 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG 1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG 215629405 GGTTACCATA Statistics Matches: 102, Mismatches: 5, Indels: 6 0.90 0.04 0.05 Matches are distributed among these distances: 72 8 0.08 73 26 0.25 76 16 0.16 77 35 0.34 78 17 0.17 ACGTcount: A:0.25, C:0.22, G:0.32, T:0.22 Consensus pattern (73 bp): GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATGATACCGGGCTAAGCCGAAGGCAATTG TGCGAGCT Found at i:215636789 original size:39 final size:39 Alignment explanation
Indices: 215636735--215636847 Score: 167 Period size: 39 Copynumber: 2.9 Consensus size: 39 215636725 AATGTTCGAG 215636735 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA * * * 215636774 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG 1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA * 215636813 TGATATCCGGGTTAAGTCCCGAAGGC-ATT-TGCGAG 1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAG 215636848 TGCGGGTTAA Statistics Matches: 68, Mismatches: 5, Indels: 3 0.89 0.07 0.04 Matches are distributed among these distances: 38 6 0.09 39 53 0.78 40 9 0.13 ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22 Consensus pattern (39 bp): TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA Found at i:215636879 original size:24 final size:27 Alignment explanation
Indices: 215636820--215636880 Score: 74 Period size: 24 Copynumber: 2.3 Consensus size: 27 215636810 TTGTGATATC 215636820 CGGGTTAAGTCCCGAAGGCATTTGCGAGTG 1 CGGGTTAAGTCCCGAAGGCATTT--G-GTG 215636850 CGGGTTAAGT-CC-AAGGCATTT-GTG 1 CGGGTTAAGTCCCGAAGGCATTTGGTG 215636874 CGGGTTA 1 CGGGTTA 215636881 CCATAACCGG Statistics Matches: 31, Mismatches: 0, Indels: 6 0.84 0.00 0.16 Matches are distributed among these distances: 24 10 0.32 28 9 0.29 29 2 0.06 30 10 0.32 ACGTcount: A:0.20, C:0.18, G:0.36, T:0.26 Consensus pattern (27 bp): CGGGTTAAGTCCCGAAGGCATTTGGTG Found at i:215641787 original size:27 final size:27 Alignment explanation
Indices: 215641757--215641816 Score: 75 Period size: 27 Copynumber: 2.2 Consensus size: 27 215641747 CAAATTGTAA * 215641757 AATTACCAAAGTACCCTCGATTTATAG 1 AATTACCAAAGTACCCTCGATTTACAG **** 215641784 AATTACCGTTTTACCCTCGATTTACAG 1 AATTACCAAAGTACCCTCGATTTACAG 215641811 AATTAC 1 AATTAC 215641817 TTGTGACAAC Statistics Matches: 28, Mismatches: 5, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 27 28 1.00 ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33 Consensus pattern (27 bp): AATTACCAAAGTACCCTCGATTTACAG Found at i:215644519 original size:43 final size:44 Alignment explanation
Indices: 215644448--215644582 Score: 184 Period size: 43 Copynumber: 3.1 Consensus size: 44 215644438 TATCGAAATG * * 215644448 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA 1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA * * * 215644492 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA 1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA * 215644535 T-ATTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA 1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA 215644580 TGA 1 TGA 215644583 AATGTTATGT Statistics Matches: 78, Mismatches: 9, Indels: 6 0.84 0.10 0.06 Matches are distributed among these distances: 42 1 0.01 43 36 0.46 44 8 0.10 45 32 0.41 46 1 0.01 ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28 Consensus pattern (44 bp): TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA Found at i:215644564 original size:45 final size:43 Alignment explanation
Indices: 215644465--215644582 Score: 166 Period size: 45 Copynumber: 2.7 Consensus size: 43 215644455 CGGGCTTCGG * 215644465 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTGA 1 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA * * * 215644508 GCTTAGTAGGCTATGATGCCGGTGAAAT-ATTATTCGAGCCTTTGA 1 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCG-GCCTTTGA 215644553 GCCTAGCAGGCTATAATGCCGGTGAAATGA 1 GCCTAGCAGGCTATAATGCCGGTGAAATGA 215644583 AATGTTATGT Statistics Matches: 64, Mismatches: 7, Indels: 5 0.84 0.09 0.07 Matches are distributed among these distances: 42 1 0.02 43 27 0.42 44 3 0.05 45 32 0.50 46 1 0.02 ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27 Consensus pattern (43 bp): GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA Found at i:215644894 original size:38 final size:38 Alignment explanation
Indices: 215644879--215645087 Score: 285 Period size: 38 Copynumber: 5.5 Consensus size: 38 215644869 GCAGGCTATA * * 215644879 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCT 1 TGCTGGTAA-TATATCCGGGTTAAATCCTGCAGGCTTCG 215644917 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG 1 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG * 215644955 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTTG 1 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG * * 215644993 TGCTGGTAATATATCCGGGTTAATTCCCGCAGGCTTCG 1 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG * * * * * * 215645031 TGCTGGTATTATATCTGGGTTAAATCCCGCAAGCCTAG 1 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG * * 215645069 TGCTGGTATTATATTCGGG 1 TGCTGGTAATATATCCGGG 215645088 CCTTTGATCC Statistics Matches: 156, Mismatches: 14, Indels: 2 0.91 0.08 0.01 Matches are distributed among these distances: 38 154 0.99 39 2 0.01 ACGTcount: A:0.21, C:0.21, G:0.26, T:0.33 Consensus pattern (38 bp): TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG Found at i:215644978 original size:76 final size:76 Alignment explanation
Indices: 215644852--215645087 Score: 298 Period size: 76 Copynumber: 3.1 Consensus size: 76 215644842 ATGATATTTG * ** * 215644852 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTT 1 TATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTT 215644915 CT-TGCTGGTAATA 64 -TGTGCTGGTAATA * * 215644928 TATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTTG 1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTTG 215644993 TGCTGGTAATA 66 TGCTGGTAATA * * * * * * 215645004 TATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTATTATATCTGGGTTAAATCCCGCAAGCCTAG 1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTTG * 215645069 TGCTGGTATTA 66 TGCTGGTAATA * 215645080 TATTCGGG 1 TATCCGGG 215645088 CCTTTGATCC Statistics Matches: 141, Mismatches: 16, Indels: 6 0.87 0.10 0.04 Matches are distributed among these distances: 75 2 0.01 76 137 0.97 77 2 0.01 ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32 Consensus pattern (76 bp): TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTTG TGCTGGTAATA Found at i:215645052 original size:114 final size:114 Alignment explanation
Indices: 215644852--215645087 Score: 314 Period size: 114 Copynumber: 2.1 Consensus size: 114 215644842 ATGATATTTG * * 215644852 TATCCGGCTTAAAGACCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCT 1 TATCCGGGTTAAAGACCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG * * * * 215644917 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAATA 66 TGCTGGTAATATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATA * * * * 215644966 TATCCGGGTTAAA-TCCTGCAGGCTTTGTGCTGGTAA-TATATCCGGGTTAATTCCCGCAGGCTT 1 TATCCGGGTTAAAGACC-GCAGGCTATATGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTT * * * 215645029 CGTGCTGGTATTATATCTGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTA 64 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATA * 215645080 TATTCGGG 1 TATCCGGG 215645088 CCTTTGATCC Statistics Matches: 106, Mismatches: 14, Indels: 4 0.85 0.11 0.03 Matches are distributed among these distances: 113 2 0.02 114 102 0.96 115 2 0.02 ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32 Consensus pattern (114 bp): TATCCGGGTTAAAGACCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG TGCTGGTAATATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTAATA Found at i:215645173 original size:45 final size:45 Alignment explanation
Indices: 215645080--215645206 Score: 179 Period size: 44 Copynumber: 2.9 Consensus size: 45 215645070 GCTGGTATTA * 215645080 TATTCGGGCCTTTGATCCTAGCAGGCTAT-ATGCCGATGAGACAC 1 TATTCGGGCCTTTGATCCTAGCAGGCTATAATGCCGGTGAGACAC ** * 215645124 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC 1 TATTCGGGCCTTTGATCCTAGCAGGCTATAATGCCGGTGAGACAC * * 215645169 TATTCGGGCC-TCGATCCTAGCAGGCGA-AATGCCGGTGA 1 TATTCGGGCCTTTGATCCTAGCAGGCTATAATGCCGGTGA 215645207 TTTGAGAAAG Statistics Matches: 74, Mismatches: 8, Indels: 3 0.87 0.09 0.04 Matches are distributed among these distances: 43 11 0.15 44 40 0.54 45 23 0.31 ACGTcount: A:0.21, C:0.24, G:0.29, T:0.25 Consensus pattern (45 bp): TATTCGGGCCTTTGATCCTAGCAGGCTATAATGCCGGTGAGACAC Found at i:215646050 original size:27 final size:27 Alignment explanation
Indices: 215646012--215646098 Score: 138 Period size: 27 Copynumber: 3.2 Consensus size: 27 215646002 AGGGTGTTAC * * 215646012 ATTACCGTTTTACCCTCGATTTATAGA 1 ATTACTGTTTTACCCTCGATTTACAGA * 215646039 ATTACTGTTTTACCCTTGATTTACAGA 1 ATTACTGTTTTACCCTCGATTTACAGA * 215646066 ATTACTGTTTTACCCTCGATTTACAAA 1 ATTACTGTTTTACCCTCGATTTACAGA 215646093 ATTACT 1 ATTACT 215646099 AAAATACCTC Statistics Matches: 55, Mismatches: 5, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 27 55 1.00 ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43 Consensus pattern (27 bp): ATTACTGTTTTACCCTCGATTTACAGA Found at i:215646106 original size:27 final size:27 Alignment explanation
Indices: 215646076--215646350 Score: 209 Period size: 27 Copynumber: 10.2 Consensus size: 27 215646066 ATTACTGTTT * * 215646076 TACCCTCGATTTACAAAATTACTAAAA 1 TACCCTCGATTTATAAAATTACCAAAA * * 215646103 TA-CCTCCGGTTTACAAAATTACCAAAA 1 TACCCT-CGATTTATAAAATTACCAAAA * 215646130 TACCCTCGA-TCAGTAAAATTACCAAAA 1 TACCCTCGATTTA-TAAAATTACCAAAA * * * * * 215646157 TACCCTAG-TCTGTAAAATTGCTAAAA 1 TACCCTCGATTTATAAAATTACCAAAA * * * ** 215646183 TACCCTTGGTTTGTAAAATTACTGAAA 1 TACCCTCGATTTATAAAATTACCAAAA * * 215646210 TACCCTCAATTTGTAAAATTACCAAAA 1 TACCCTCGATTTATAAAATTACCAAAA * * 215646237 TACCC-CTAGTTTGTAAAATTACCAAAA 1 TACCCTCGA-TTTATAAAATTACCAAAA * * * * * 215646264 TACCATTGGTTTGTAAAATTACCGAAA 1 TACCCTCGATTTATAAAATTACCAAAA * * 215646291 TACCCTCAATTTGTAAAATTACCAAAA 1 TACCCTCGATTTATAAAATTACCAAAA * * * * 215646318 TACCC-CTAATTTACAAAGTTCCCAAAA 1 TACCCTC-GATTTATAAAATTACCAAAA 215646345 TACCCT 1 TACCCT 215646351 TGACTTTCTA Statistics Matches: 204, Mismatches: 35, Indels: 17 0.80 0.14 0.07 Matches are distributed among these distances: 26 27 0.13 27 174 0.85 28 3 0.01 ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29 Consensus pattern (27 bp): TACCCTCGATTTATAAAATTACCAAAA Found at i:215646134 original size:54 final size:53 Alignment explanation
Indices: 215646076--215646432 Score: 230 Period size: 54 Copynumber: 6.6 Consensus size: 53 215646066 ATTACTGTTT ** * * 215646076 TACCCTCGATTTACAAAATTACTAAAATACCTCCGGTTTACAAAATTACCAAAA 1 TACCCTCGATTTGTAAAATTACCAAAATACC-CCAGTTTACAAAATTACCAAAA ** * * ** * * 215646130 TACCCTCGATCAGTAAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAAAA 1 TACCCTCGATTTGTAAAATTACCAAAATACCCCAGTTTACAAAATTACCAAAA * * ** * ** 215646183 TACCCTTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAA 1 TACCCTCGATTTGTAAAATTACCAAAATACCC-CAGTTTACAAAATTACCAAAA * *** ** * 215646237 TACCC-CTAGTTTGTAAAATTACCAAAATACCATTGGTTTGTAAAATTACCGAAA 1 TACCCTCGA-TTTGTAAAATTACCAAAATACC-CCAGTTTACAAAATTACCAAAA * * * * 215646291 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAGTTCCCAAAA 1 TACCCTCGATTTGTAAAATTACCAAAATACCCC-AGTTTACAAAATTACCAAAA * * *** *** ** 215646345 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTGAAA 1 TACCCTCGA-TTTGT-AAAATTACCAAAATACC-CCAGTTTACAAAATTACCAAAA * * * * * 215646401 TACCCTTGGTTTGTAGATTTACCAAAACACCC 1 TACCCTCGATTTGTAAAATTACCAAAATACCC 215646433 TTGTAGGATG Statistics Matches: 229, Mismatches: 66, Indels: 17 0.73 0.21 0.05 Matches are distributed among these distances: 53 41 0.18 54 142 0.62 55 10 0.04 56 36 0.16 ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30 Consensus pattern (53 bp): TACCCTCGATTTGTAAAATTACCAAAATACCCCAGTTTACAAAATTACCAAAA Found at i:215646161 original size:81 final size:80 Alignment explanation
Indices: 215646076--215646348 Score: 282 Period size: 81 Copynumber: 3.4 Consensus size: 80 215646066 ATTACTGTTT * * ** * * * 215646076 TACCCTCGATTTACAAAATTACTAAAATACCTCCGGTTTACAAAATTACCAAAATACCCTCGATC 1 TACCC-CGATTTACAAAATTACCAAAATACCTCTGGTTTGTAAAATTACCGAAATACCCTCAATT * 215646141 AGTAAAATTACCAAAA 65 TGTAAAATTACCAAAA * * ** * * * 215646157 TA-CCCTAGTCTGTAAAATTGCTAAAATACC-CTTGGTTTGTAAAATTACTGAAATACCCTCAAT 1 TACCCCGA-TTTACAAAATTACCAAAATACCTC-TGGTTTGTAAAATTACCGAAATACCCTCAAT 215646220 TTGTAAAATTACCAAAA 64 TTGTAAAATTACCAAAA * ** 215646237 TACCCCTAGTTTGTAAAATTACCAAAATACCAT-TGGTTTGTAAAATTACCGAAATACCCTCAAT 1 TACCCCGA-TTTACAAAATTACCAAAATACC-TCTGGTTTGTAAAATTACCGAAATACCCTCAAT 215646301 TTGTAAAATTACCAAAA 64 TTGTAAAATTACCAAAA * * * 215646318 TACCCCTAATTTACAAAGTTCCCAAAATACC 1 TACCCC-GATTTACAAAATTACCAAAATACC 215646349 CTTGACTTTC Statistics Matches: 164, Mismatches: 22, Indels: 12 0.83 0.11 0.06 Matches are distributed among these distances: 79 3 0.02 80 62 0.38 81 98 0.60 82 1 0.01 ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29 Consensus pattern (80 bp): TACCCCGATTTACAAAATTACCAAAATACCTCTGGTTTGTAAAATTACCGAAATACCCTCAATTT GTAAAATTACCAAAA Found at i:215646394 original size:27 final size:27 Alignment explanation
Indices: 215646361--215646412 Score: 79 Period size: 27 Copynumber: 1.9 Consensus size: 27 215646351 TGACTTTCTA 215646361 AAAATTA-TGGAAATACCATTGGTTTAC 1 AAAATTACT-GAAATACCATTGGTTTAC * 215646388 AAAATTACTGAAATACCCTTGGTTT 1 AAAATTACTGAAATACCATTGGTTT 215646413 GTAGATTTAC Statistics Matches: 23, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 27 22 0.96 28 1 0.04 ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35 Consensus pattern (27 bp): AAAATTACTGAAATACCATTGGTTTAC Found at i:215646494 original size:26 final size:26 Alignment explanation
Indices: 215646465--215646550 Score: 120 Period size: 26 Copynumber: 3.3 Consensus size: 26 215646455 TACCCCTATT 215646465 AGGTAAAGAGACCTAAAGCCCCTGTA 1 AGGTAAAGAGACCTAAAGCCCCTGTA 215646491 AGGTAAAGAGACCTAAAGCCCCTGTA 1 AGGTAAAGAGACCTAAAGCCCCTGTA * * 215646517 GGGTAAAGTGACCGTAATA-CCCCTGTA 1 AGGTAAAGAGACC-TAA-AGCCCCTGTA * 215646544 TGGTAAA 1 AGGTAAA 215646551 ATGACCAATA Statistics Matches: 55, Mismatches: 3, Indels: 3 0.90 0.05 0.05 Matches are distributed among these distances: 26 37 0.67 27 17 0.31 28 1 0.02 ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19 Consensus pattern (26 bp): AGGTAAAGAGACCTAAAGCCCCTGTA Found at i:215647385 original size:26 final size:26 Alignment explanation
Indices: 215647356--215647543 Score: 249 Period size: 26 Copynumber: 7.3 Consensus size: 26 215647346 GAGGAAGTGC 215647356 AAAAGGGCTTATGCCCCAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTATTG ** 215647382 AAAAGGGCTTATGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTG * 215647408 AAAAGGGCTTATGCCCTAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTATTG * ** 215647434 AAAAGGGCTTATGCTCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTG 215647460 AAAAGGGCTTATGCCCCAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTATTG * *** 215647486 AAAAGGGCTT-TGCCCTAGTTTACCA 1 AAAAGGGCTTATGCCCCAGTTTATTG 215647511 AAAAGGGCTT-TGCCCCAG-TTATT- 1 AAAAGGGCTTATGCCCCAGTTTATTG 215647534 AAAAGAGGCT 1 AAAAG-GGCT 215647544 AGGCCTCCAG Statistics Matches: 142, Mismatches: 19, Indels: 4 0.86 0.12 0.02 Matches are distributed among these distances: 23 5 0.04 24 7 0.05 25 28 0.20 26 102 0.72 ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28 Consensus pattern (26 bp): AAAAGGGCTTATGCCCCAGTTTATTG Found at i:215647434 original size:52 final size:52 Alignment explanation
Indices: 215647356--215647543 Score: 303 Period size: 52 Copynumber: 3.7 Consensus size: 52 215647346 GAGGAAGTGC 215647356 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG * * 215647408 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCTCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG * * 215647460 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCTAGTTTACCA 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG 215647511 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT 215647544 AGGCCTCCAG Statistics Matches: 129, Mismatches: 6, Indels: 5 0.92 0.04 0.04 Matches are distributed among these distances: 48 5 0.04 49 9 0.07 50 8 0.06 51 22 0.17 52 85 0.66 ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28 Consensus pattern (52 bp): AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG Found at i:215647735 original size:42 final size:42 Alignment explanation
Indices: 215647676--215647767 Score: 132 Period size: 42 Copynumber: 2.2 Consensus size: 42 215647666 TAGTCTCCCC * ** * 215647676 AAATGGGCTTGCATACATTCATTGGTATTTCATGCT-ATATTG 1 AAATGGGCTTGCATACATACATTGACATTACATG-TGATATTG 215647718 AAATGGGCTTGCATACATACATTGACATTACATGTGATATTG 1 AAATGGGCTTGCATACATACATTGACATTACATGTGATATTG 215647760 AAATGGGC 1 AAATGGGC 215647768 CTAAGGGCCA Statistics Matches: 45, Mismatches: 4, Indels: 2 0.88 0.08 0.04 Matches are distributed among these distances: 41 1 0.02 42 44 0.98 ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35 Consensus pattern (42 bp): AAATGGGCTTGCATACATACATTGACATTACATGTGATATTG Found at i:215647855 original size:31 final size:31 Alignment explanation
Indices: 215647791--215647873 Score: 107 Period size: 30 Copynumber: 2.7 Consensus size: 31 215647781 CGTTTACAAT * * * 215647791 AAAGGCTTCAGACCAATGATAT-ATTCATGA 1 AAAGGCTTCGGCCCAGTGATATGATTCATGA * * 215647821 AAAGGCTTTGGCCCAGTGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTCATGA 215647852 AAAGGCTTCGGCCCAGT-ATATG 1 AAAGGCTTCGGCCCAGTGATATG 215647874 TCGAGACTAA Statistics Matches: 46, Mismatches: 6, Indels: 2 0.85 0.11 0.04 Matches are distributed among these distances: 30 23 0.50 31 23 0.50 ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTGATATGATTCATGA Found at i:215655128 original size:40 final size:39 Alignment explanation
Indices: 215654968--215655130 Score: 263 Period size: 39 Copynumber: 4.2 Consensus size: 39 215654958 TGTGTATGAA * 215654968 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 215655007 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT * * * 215655046 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT * * 215655085 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT 1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT 215655125 TGTGCG 1 TGTGCG 215655131 GGTTACCATA Statistics Matches: 114, Mismatches: 9, Indels: 1 0.92 0.07 0.01 Matches are distributed among these distances: 39 97 0.85 40 17 0.15 ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24 Consensus pattern (39 bp): TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT Found at i:215655146 original size:40 final size:39 Alignment explanation
Indices: 215654968--215655161 Score: 253 Period size: 39 Copynumber: 4.9 Consensus size: 39 215654958 TGTGTATGAA * * 215654968 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT * 215655007 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT * * 215655046 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT * * * 215655085 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT 1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT * ** * * 215655125 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC 1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC 215655162 GTTTGAACGA Statistics Matches: 138, Mismatches: 16, Indels: 1 0.89 0.10 0.01 Matches are distributed among these distances: 39 97 0.70 40 41 0.30 ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23 Consensus pattern (39 bp): TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT Found at i:215663023 original size:40 final size:39 Alignment explanation
Indices: 215662863--215663025 Score: 263 Period size: 39 Copynumber: 4.2 Consensus size: 39 215662853 TGTGTATGAA * 215662863 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 215662902 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT * * * 215662941 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT * * 215662980 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT 1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT 215663020 TGTGCG 1 TGTGCG 215663026 GGTTACCATA Statistics Matches: 114, Mismatches: 9, Indels: 1 0.92 0.07 0.01 Matches are distributed among these distances: 39 97 0.85 40 17 0.15 ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24 Consensus pattern (39 bp): TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT Found at i:215663041 original size:40 final size:39 Alignment explanation
Indices: 215662863--215663056 Score: 253 Period size: 39 Copynumber: 4.9 Consensus size: 39 215662853 TGTGTATGAA * * 215662863 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT * 215662902 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT * * 215662941 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT * * * 215662980 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT 1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT * ** * * 215663020 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC 1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC 215663057 GTTTGAACGA Statistics Matches: 138, Mismatches: 16, Indels: 1 0.89 0.10 0.01 Matches are distributed among these distances: 39 97 0.70 40 41 0.30 ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23 Consensus pattern (39 bp): TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT Found at i:215670840 original size:39 final size:39 Alignment explanation
Indices: 215670786--215670948 Score: 263 Period size: 39 Copynumber: 4.2 Consensus size: 39 215670776 TGTGTATGAA * 215670786 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 215670825 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT * * * 215670864 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT * * 215670903 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT 1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT 215670943 TGTGCG 1 TGTGCG 215670949 GTTACCATAA Statistics Matches: 114, Mismatches: 9, Indels: 1 0.92 0.07 0.01 Matches are distributed among these distances: 39 97 0.85 40 17 0.15 ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24 Consensus pattern (39 bp): TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT Found at i:215670974 original size:39 final size:39 Alignment explanation
Indices: 215670786--215670978 Score: 253 Period size: 39 Copynumber: 4.9 Consensus size: 39 215670776 TGTGTATGAA * * 215670786 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT * 215670825 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT * * 215670864 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT 1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT * * * 215670903 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT 1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT ** * * 215670943 TGTGCG-GTTACCATAACCGGGCTATGTCCCGAAGGC 1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC 215670979 GTTTGAACGA Statistics Matches: 138, Mismatches: 15, Indels: 2 0.89 0.10 0.01 Matches are distributed among these distances: 39 121 0.88 40 17 0.12 ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23 Consensus pattern (39 bp): TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT Found at i:215670999 original size:79 final size:78 Alignment explanation
Indices: 215670803--215671016 Score: 218 Period size: 78 Copynumber: 2.7 Consensus size: 78 215670793 ATTGTGATAT ** * * 215670803 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTG 1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATGGTG ** * 215670868 CGAGCTATGATAT 66 CGAGCTACCATAA ** * * * 215670881 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT 1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATGGT * 215670946 GCG-GTTACCATAA 65 GCGAGCTACCATAA * ** * 215670959 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG 1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG 215671017 TATGTGATTT Statistics Matches: 118, Mismatches: 14, Indels: 8 0.84 0.10 0.06 Matches are distributed among these distances: 77 1 0.01 78 76 0.64 79 40 0.34 80 1 0.01 ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22 Consensus pattern (78 bp): CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATGGTG CGAGCTACCATAA Found at i:215673680 original size:48 final size:45 Alignment explanation
Indices: 215673536--215673849 Score: 167 Period size: 49 Copynumber: 6.7 Consensus size: 45 215673526 ATGGATGTGT * * * * 215673536 GCTAGTGTAAGACATGTCAGGGACAT-GTATCGGTCA-CATTATGAG 1 GCTAGTGTAAGACATGTCTGGGACATGGCATC-G-CATCAATATGAA * * * * 215673581 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTAAGATGAGA 1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATC-GCATCAATATGA-A * 215673629 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGAGATATGCAA 1 GCTAGTGTAAGACATGTCTGGGACATGGCATC-GCATC-A-ATATG-AA * * * * * * 215673677 GCTAGTGTAAGACCTATCTGAGACATGGCATCGGCAT-GACATG-T 1 GCTAGTGTAAGACATGTCTGGGACATGGCATC-GCATCAATATGAA * * * * * 215673721 G-TCAGTGTAAGACCTATCTGGGACATGGCATCGACACCGATAGAGGACA 1 GCT-AGTGTAAGACATGTCTGGGACATGGCATCG-CATC-A-ATATGA-A * * * 215673770 TCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAA 1 GCTAGTGTAAGACATGTCTGGGACATGGCATC-GCATC-A-ATATG-AA * 215673819 G-TCAGTGTAAGATC-TGTTTGGGACATGGCAT 1 GCT-AGTGTAAGA-CATGTCTGGGACATGGCAT 215673850 AGACTTAGAT Statistics Matches: 213, Mismatches: 36, Indels: 36 0.75 0.13 0.13 Matches are distributed among these distances: 43 2 0.01 44 31 0.15 45 11 0.05 46 26 0.12 47 28 0.13 48 40 0.19 49 71 0.33 50 4 0.02 ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24 Consensus pattern (45 bp): GCTAGTGTAAGACATGTCTGGGACATGGCATCGCATCAATATGAA Found at i:215677357 original size:27 final size:27 Alignment explanation
Indices: 215677327--215677841 Score: 617 Period size: 27 Copynumber: 19.1 Consensus size: 27 215677317 ATACTCCCGG * 215677327 TTTATAGAATTACCGTTTTACCCTCGA 1 TTTACAGAATTACCGTTTTACCCTCGA 215677354 TTTACAGAATTACCGTTTTACCCTCGA 1 TTTACAGAATTACCGTTTTACCCTCGA * 215677381 TTTATAGAATTACCGTTTTACCCTC-A 1 TTTACAGAATTACCGTTTTACCCTCGA * * 215677407 GTTTACAGAATTACTGTTTTACCCTTGA 1 -TTTACAGAATTACCGTTTTACCCTCGA * 215677435 TTTATAGAATTACCGTTTTACCCTCGA 1 TTTACAGAATTACCGTTTTACCCTCGA ** * * 215677462 TTTGTAAAATTATCGTTTTACCCTCGA 1 TTTACAGAATTACCGTTTTACCCTCGA * 215677489 TTTACAGAATTACCGTTTTACACTC-A 1 TTTACAGAATTACCGTTTTACCCTCGA * 215677515 GTTTACAGAATTACTGTTTTACCCTCGA 1 -TTTACAGAATTACCGTTTTACCCTCGA * * * 215677543 TTTATAAAATTACCATTTTACCCTCGA 1 TTTACAGAATTACCGTTTTACCCTCGA ** * 215677570 TTTGTAAAATTACCGTTTTACCCTCGA 1 TTTACAGAATTACCGTTTTACCCTCGA * 215677597 TTTACAGAATTACCGTTTTACCCT-TA 1 TTTACAGAATTACCGTTTTACCCTCGA ** * 215677623 GTTTACAGAATTACTATTTTACCCTCAA 1 -TTTACAGAATTACCGTTTTACCCTCGA * 215677651 TTTACAGAATTACCATTTTACCCTC-A 1 TTTACAGAATTACCGTTTTACCCTCGA * 215677677 GTTTACAGAATTACTGTTTTACCCTCGA 1 -TTTACAGAATTACCGTTTTACCCTCGA * * 215677705 TTTACAGAATTATCGTTTTACCCTTGA 1 TTTACAGAATTACCGTTTTACCCTCGA ** * * 215677732 TTTGTAAAATTACCGTTTTACCCTTGA 1 TTTACAGAATTACCGTTTTACCCTCGA * * 215677759 TTTACAGAATTACTGGTTTACCCTC-A 1 TTTACAGAATTACCGTTTTACCCTCGA * * * 215677785 GTTTACAAAATTATCGTTTTACCCTTGA 1 -TTTACAGAATTACCGTTTTACCCTCGA ** * 215677813 TTTACAGAATTACAATTTTACCCTTGA 1 TTTACAGAATTACCGTTTTACCCTCGA 215677840 TT 1 TT 215677842 GTGAAATTAC Statistics Matches: 422, Mismatches: 56, Indels: 20 0.85 0.11 0.04 Matches are distributed among these distances: 26 5 0.01 27 412 0.98 28 5 0.01 ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41 Consensus pattern (27 bp): TTTACAGAATTACCGTTTTACCCTCGA Found at i:215677841 original size:108 final size:109 Alignment explanation
Indices: 215677327--215677837 Score: 685 Period size: 108 Copynumber: 4.7 Consensus size: 109 215677317 ATACTCCCGG * * 215677327 TTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATT 1 TTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT * 215677392 ACCGTTTTACCC-TCAGTTTACAGAATTACTGTTTTACCCTTGA 66 ACCGTTTTACCCTTCAGTTTACAGAATTACTGTTTTACCCTCGA ** * 215677435 TTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTATCGTTTTACCCTCGATTTACAGAATT 1 TTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT * 215677500 ACCGTTTTACAC-TCAGTTTACAGAATTACTGTTTTACCCTCGA 66 ACCGTTTTACCCTTCAGTTTACAGAATTACTGTTTTACCCTCGA * * ** 215677543 TTTATAAAATTACCATTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATT 1 TTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT * * 215677608 ACCGTTTTACCCTT-AGTTTACAGAATTACTATTTTACCCTCAA 66 ACCGTTTTACCCTTCAGTTTACAGAATTACTGTTTTACCCTCGA * * * * 215677651 TTTACAGAATTACCATTTTACCCTC-AGTTTACAGAATTACTGTTTTACCCTCGATTTACAGAAT 1 TTTATAGAATTACCGTTTTACCCTCGA-TTTACAAAATTACCGTTTTACCCTCGATTTACAGAAT * * * * * 215677715 TATCGTTTTACCCTTGATTTGTA-A-AATTACCGTTTTACCCTTGA 65 TACCGTTTTACCCTTCAGTT-TACAGAATTACTGTTTTACCCTCGA * * * * * 215677759 TTTACAGAATTACTGGTTTACCCTC-AGTTTACAAAATTATCGTTTTACCCTTGATTTACAGAAT 1 TTTATAGAATTACCGTTTTACCCTCGA-TTTACAAAATTACCGTTTTACCCTCGATTTACAGAAT ** 215677823 TACAATTTTACCCTT 65 TACCGTTTTACCCTT 215677838 GATTGTGAAA Statistics Matches: 364, Mismatches: 35, Indels: 8 0.89 0.09 0.02 Matches are distributed among these distances: 107 1 0.00 108 356 0.98 109 5 0.01 110 2 0.01 ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41 Consensus pattern (109 bp): TTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATT ACCGTTTTACCCTTCAGTTTACAGAATTACTGTTTTACCCTCGA Found at i:215677876 original size:27 final size:27 Alignment explanation
Indices: 215677846--215678041 Score: 257 Period size: 27 Copynumber: 7.3 Consensus size: 27 215677836 TTGATTGTGA * 215677846 AATTACTGAAATACCCCTGTAGGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG * * 215677873 AATTTCCGAAATACCCCTATAGGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG * * * * 215677900 AATTACTGAAATACCCTTATAGGATAG 1 AATTACCGAAATACCCCTGTAGGGTAG * 215677927 AATTACCAAAATACCCCTGTAGGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG * * 215677954 AATTATCGAAATACCCTTGTAGGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG * 215677981 AAATACCGAAATACCCCTGTAGGGTAG 1 AATTACCGAAATACCCCTGTAGGGTAG * * * * 215678008 AATTACCGAGATACCCTTGTGGGGTAA 1 AATTACCGAAATACCCCTGTAGGGTAG 215678035 AATTACC 1 AATTACC 215678042 ATTTTGCCCC Statistics Matches: 146, Mismatches: 23, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 27 146 1.00 ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26 Consensus pattern (27 bp): AATTACCGAAATACCCCTGTAGGGTAG Found at i:215678278 original size:27 final size:26 Alignment explanation
Indices: 215678240--215678322 Score: 112 Period size: 27 Copynumber: 3.1 Consensus size: 26 215678230 CGGAGGAAGC * 215678240 GTTCTGGTGGCTATGCCACAAATATCT 1 GTTCTGGTGGCTCTGCCAC-AATATCT 215678267 GTTCTGGTGGCTCTGCCACAATATCT 1 GTTCTGGTGGCTCTGCCACAATATCT * * * 215678293 GTATTTGGTGACTCTACCACAATATCT 1 GT-TCTGGTGGCTCTGCCACAATATCT 215678320 GTT 1 GTT 215678323 GACGATCGAT Statistics Matches: 51, Mismatches: 4, Indels: 3 0.88 0.07 0.05 Matches are distributed among these distances: 26 10 0.20 27 41 0.80 ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36 Consensus pattern (26 bp): GTTCTGGTGGCTCTGCCACAATATCT Found at i:215678654 original size:27 final size:27 Alignment explanation
Indices: 215678632--215678698 Score: 82 Period size: 27 Copynumber: 2.5 Consensus size: 27 215678622 TAGGTGGGTT * 215678632 TGCCACATTATCTGAT-TCTGGTGGCTC 1 TGCCACAATATCT-ATATCTGGTGGCTC * 215678659 TGCCACAATATCTATATCTGGTGACTC 1 TGCCACAATATCTATATCTGGTGGCTC * * 215678686 TGACACGATATCT 1 TGCCACAATATCT 215678699 GTTCTGAAGA Statistics Matches: 35, Mismatches: 4, Indels: 2 0.85 0.10 0.05 Matches are distributed among these distances: 26 2 0.06 27 33 0.94 ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34 Consensus pattern (27 bp): TGCCACAATATCTATATCTGGTGGCTC Found at i:215678831 original size:6 final size:6 Alignment explanation
Indices: 215678822--215678923 Score: 95 Period size: 6 Copynumber: 16.8 Consensus size: 6 215678812 TTGCATTCAC * * * 215678822 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTTTG ATTCTG ATTCTG 1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG * 215678871 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG 1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG 215678919 ATTCT 1 ATTCT 215678924 CATTTTGGTT Statistics Matches: 79, Mismatches: 8, Indels: 18 0.75 0.08 0.17 Matches are distributed among these distances: 5 6 0.08 6 66 0.84 7 5 0.06 8 2 0.03 ACGTcount: A:0.20, C:0.16, G:0.15, T:0.50 Consensus pattern (6 bp): ATTCTG Found at i:215678944 original size:30 final size:30 Alignment explanation
Indices: 215678822--215678923 Score: 152 Period size: 30 Copynumber: 3.4 Consensus size: 30 215678812 TTGCATTCAC * 215678822 ATTCTGATTCTGATTCTGTCACGTAATTCTG 1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG * 215678853 ATTTTGATTCTGATTCTGTTACTAATAT-TG 1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG * 215678883 ATTCTGATTCTGATTCTGTTACTGATTCTG 1 ATTCTGATTCTGATTCTGTTACTAATTCTG 215678913 ATTCTGATTCT 1 ATTCTGATTCT 215678924 CATTTTGGTT Statistics Matches: 65, Mismatches: 4, Indels: 5 0.88 0.05 0.07 Matches are distributed among these distances: 29 1 0.02 30 43 0.66 31 21 0.32 ACGTcount: A:0.20, C:0.16, G:0.15, T:0.50 Consensus pattern (30 bp): ATTCTGATTCTGATTCTGTTACTAATTCTG Found at i:215702035 original size:30 final size:30 Alignment explanation
Indices: 215701999--215702099 Score: 118 Period size: 28 Copynumber: 3.5 Consensus size: 30 215701989 GACAAGATTG * * * 215701999 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTTAAAATTATATA * * 215702029 GCACTAAGTGTGCGAGTTT--GATTCTATA 1 GCACTAAGTGTGCGAGTTTAAAATTATATA * * 215702057 GCACTAAGTGTGCGAGCTGAAAA-TATATA 1 GCACTAAGTGTGCGAGTTTAAAATTATATA 215702086 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 215702100 GATTCACTAT Statistics Matches: 61, Mismatches: 8, Indels: 5 0.82 0.11 0.07 Matches are distributed among these distances: 28 23 0.38 29 19 0.31 30 19 0.31 ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29 Consensus pattern (30 bp): GCACTAAGTGTGCGAGTTTAAAATTATATA Found at i:215702111 original size:29 final size:28 Alignment explanation
Indices: 215702028--215702103 Score: 75 Period size: 29 Copynumber: 2.7 Consensus size: 28 215702018 AAAATTGTAC * * 215702028 AGCACTAAGTGTGCGAGTTTGAT-TCTAT 1 AGCACTAAGTGTGCG-GATTGATATATAT * * 215702056 AGCACTAAGTGTGC-GAGCTGAAAATATAT 1 AGCACTAAGTGTGCGGA-TTG-ATATATAT 215702085 AGCACTAAGTGTGCGGATT 1 AGCACTAAGTGTGCGGATT 215702104 CACTATATGC Statistics Matches: 39, Mismatches: 5, Indels: 7 0.76 0.10 0.14 Matches are distributed among these distances: 26 1 0.03 27 2 0.05 28 15 0.38 29 19 0.49 30 2 0.05 ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29 Consensus pattern (28 bp): AGCACTAAGTGTGCGGATTGATATATAT Found at i:215714512 original size:31 final size:31 Alignment explanation
Indices: 215714474--215714537 Score: 119 Period size: 31 Copynumber: 2.1 Consensus size: 31 215714464 CCTTTTCATA 215714474 TTTCATATTTCATAATACTGGGCCGAAGCCT 1 TTTCATATTTCATAATACTGGGCCGAAGCCT * 215714505 TTTCATATTTCATATTACTGGGCCGAAGCCT 1 TTTCATATTTCATAATACTGGGCCGAAGCCT 215714536 TT 1 TT 215714538 ACTGTAAACG Statistics Matches: 32, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 31 32 1.00 ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39 Consensus pattern (31 bp): TTTCATATTTCATAATACTGGGCCGAAGCCT Found at i:215714828 original size:70 final size:70 Alignment explanation
Indices: 215714728--215714892 Score: 253 Period size: 70 Copynumber: 2.3 Consensus size: 70 215714718 TGCTTTATCA * 215714728 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCC-TTTAATAACTGGGGCATA 1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA 215714791 AGCCCTT 64 AGCCCTT * * * 215714798 TAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAA 1 T-ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAA 215714863 GCCCTT 65 GCCCTT 215714869 TATAACTGGGGCATAAGCCCTTTT 1 TATAACTGGGGCATAAGCCCTTTT 215714893 TCACTTCCTC Statistics Matches: 88, Mismatches: 4, Indels: 6 0.90 0.04 0.06 Matches are distributed among these distances: 70 51 0.58 71 37 0.42 ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28 Consensus pattern (70 bp): TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG CCCTT Found at i:215714832 original size:24 final size:24 Alignment explanation
Indices: 215714729--215714892 Score: 239 Period size: 23 Copynumber: 7.0 Consensus size: 24 215714719 GCTTTATCAT * 215714729 ATAACTGGAGGCCT-AGCCTCTTTTA 1 ATAACTGG-GGCATAAGCC-CTTTTA * 215714754 ATAACTGGGGCAAAAGCCC-TTTA 1 ATAACTGGGGCATAAGCCCTTTTA 215714777 ATAACTGGGGCATAAGCCC-TTTA 1 ATAACTGGGGCATAAGCCCTTTTA * 215714800 ATAACTGGGGCATAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTA * 215714824 ATAACTGGGGCATAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTA 215714848 ATAACTGGGGCATAAGCCC-TTT- 1 ATAACTGGGGCATAAGCCCTTTTA 215714870 ATAACTGGGGCATAAGCCCTTTT 1 ATAACTGGGGCATAAGCCCTTTT 215714893 TCACTTCCTC Statistics Matches: 132, Mismatches: 4, Indels: 8 0.92 0.03 0.06 Matches are distributed among these distances: 22 19 0.14 23 51 0.39 24 50 0.38 25 12 0.09 ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28 Consensus pattern (24 bp): ATAACTGGGGCATAAGCCCTTTTA Found at i:215714970 original size:11 final size:11 Alignment explanation
Indices: 215714939--215714993 Score: 57 Period size: 11 Copynumber: 5.5 Consensus size: 11 215714929 ATTTATGAAC 215714939 ATCATGTGCAT 1 ATCATGTGCAT * 215714950 ATCA--TACAT 1 ATCATGTGCAT 215714959 ATCATGTGCAT 1 ATCATGTGCAT * 215714970 ATCA--TACAT 1 ATCATGTGCAT 215714979 -TCATGTGCAT 1 ATCATGTGCAT 215714989 ATCAT 1 ATCAT 215714994 ACATACCATT Statistics Matches: 35, Mismatches: 4, Indels: 10 0.71 0.08 0.20 Matches are distributed among these distances: 8 3 0.09 9 12 0.34 10 4 0.11 11 16 0.46 ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36 Consensus pattern (11 bp): ATCATGTGCAT Found at i:215714984 original size:19 final size:20 Alignment explanation
Indices: 215714939--215714998 Score: 113 Period size: 20 Copynumber: 3.0 Consensus size: 20 215714929 ATTTATGAAC 215714939 ATCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT 215714959 ATCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT 215714979 -TCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT 215714998 A 1 A 215714999 CCATTTTATC Statistics Matches: 39, Mismatches: 0, Indels: 2 0.95 0.00 0.05 Matches are distributed among these distances: 19 19 0.49 20 20 0.51 ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35 Consensus pattern (20 bp): ATCATGTGCATATCATACAT Found at i:215722588 original size:38 final size:35 Alignment explanation
Indices: 215722529--215722646 Score: 135 Period size: 31 Copynumber: 3.5 Consensus size: 35 215722519 TCAATCATGC * 215722529 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT 1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T 215722568 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT 1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT 215722599 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT 1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT 215722630 ACTGGGCCGAAGCCTTT 1 ACTGGGCCGAAGCCTTT 215722647 ACTGTAAACG Statistics Matches: 78, Mismatches: 1, Indels: 8 0.90 0.01 0.09 Matches are distributed among these distances: 31 49 0.63 33 2 0.03 34 1 0.01 36 1 0.01 38 14 0.18 39 11 0.14 ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37 Consensus pattern (35 bp): ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT Found at i:215722590 original size:31 final size:31 Alignment explanation
Indices: 215722552--215722646 Score: 181 Period size: 31 Copynumber: 3.1 Consensus size: 31 215722542 CCTTTTCATA * 215722552 TTTCATATTTCATAATACTGGGCCGAAGCCT 1 TTTCATATTTCATATTACTGGGCCGAAGCCT 215722583 TTTCATATTTCATATTACTGGGCCGAAGCCT 1 TTTCATATTTCATATTACTGGGCCGAAGCCT 215722614 TTTCATATTTCATATTACTGGGCCGAAGCCT 1 TTTCATATTTCATATTACTGGGCCGAAGCCT 215722645 TT 1 TT 215722647 ACTGTAAACG Statistics Matches: 63, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 31 63 1.00 ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39 Consensus pattern (31 bp): TTTCATATTTCATATTACTGGGCCGAAGCCT Found at i:215722940 original size:24 final size:24 Alignment explanation
Indices: 215722838--215723025 Score: 278 Period size: 24 Copynumber: 8.0 Consensus size: 24 215722828 GCTTTATCAT * 215722838 ATAACTGGAGGCCT-AGCCTCTTTTA 1 ATAACTGG-GGCATAAGCC-CTTTTA * 215722863 ATAACTGGGGCAAAAGCCC-TTT- 1 ATAACTGGGGCATAAGCCCTTTTA 215722885 ATAACTGGGGCATAAGCCC-TTTA 1 ATAACTGGGGCATAAGCCCTTTTA * 215722908 ATAACTGGGGCATAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTA * 215722932 ATAACTGGGGCATAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTA * 215722956 ATAACTGGGGCATAAGCCCTTTTG 1 ATAACTGGGGCATAAGCCCTTTTA 215722980 ATAACTGGGGCATAAGCCC-TTTA 1 ATAACTGGGGCATAAGCCCTTTTA 215723003 ATAACTGGGGCATAAGCCCTTTT 1 ATAACTGGGGCATAAGCCCTTTT 215723026 TCACTTCCTC Statistics Matches: 154, Mismatches: 5, Indels: 9 0.92 0.03 0.05 Matches are distributed among these distances: 22 21 0.14 23 44 0.29 24 77 0.50 25 12 0.08 ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28 Consensus pattern (24 bp): ATAACTGGGGCATAAGCCCTTTTA Found at i:215723098 original size:20 final size:20 Alignment explanation
Indices: 215723073--215723139 Score: 116 Period size: 20 Copynumber: 3.4 Consensus size: 20 215723063 ATTTATGAAC 215723073 ATCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT 215723093 ATCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT * 215723113 GTCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT * 215723133 ACCATGT 1 ATCATGT 215723140 TTATCAAAAT Statistics Matches: 44, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 20 44 1.00 ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34 Consensus pattern (20 bp): ATCATGTGCATATCATACAT Found at i:215723104 original size:11 final size:11 Alignment explanation
Indices: 215723073--215723128 Score: 57 Period size: 11 Copynumber: 5.5 Consensus size: 11 215723063 ATTTATGAAC 215723073 ATCATGTGCAT 1 ATCATGTGCAT * 215723084 ATCA--TACAT 1 ATCATGTGCAT 215723093 ATCATGTGCAT 1 ATCATGTGCAT * 215723104 ATCA--TACAT 1 ATCATGTGCAT * 215723113 GTCATGTGCAT 1 ATCATGTGCAT 215723124 ATCAT 1 ATCAT 215723129 ACATACCATG Statistics Matches: 35, Mismatches: 6, Indels: 8 0.71 0.12 0.16 Matches are distributed among these distances: 9 15 0.43 11 20 0.57 ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36 Consensus pattern (11 bp): ATCATGTGCAT Found at i:215725284 original size:14 final size:14 Alignment explanation
Indices: 215725250--215725299 Score: 73 Period size: 14 Copynumber: 3.5 Consensus size: 14 215725240 AGGACTTAAG * 215725250 GATTAATGCAGAAAA 1 GATTAAT-CACAAAA 215725265 GATTAATCACAAAA 1 GATTAATCACAAAA * 215725279 GGTTAATCACAAAA 1 GATTAATCACAAAA 215725293 GATTAAT 1 GATTAAT 215725300 GTAATTATAA Statistics Matches: 32, Mismatches: 3, Indels: 1 0.89 0.08 0.03 Matches are distributed among these distances: 14 25 0.78 15 7 0.22 ACGTcount: A:0.52, C:0.10, G:0.14, T:0.24 Consensus pattern (14 bp): GATTAATCACAAAA Found at i:215726642 original size:12 final size:13 Alignment explanation
Indices: 215726618--215726646 Score: 51 Period size: 12 Copynumber: 2.3 Consensus size: 13 215726608 GGGCTATAAC 215726618 TATTGCATTTATT 1 TATTGCATTTATT 215726631 TATTGC-TTTATT 1 TATTGCATTTATT 215726643 TATT 1 TATT 215726647 CATGTACGAG Statistics Matches: 16, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 12 10 0.62 13 6 0.38 ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66 Consensus pattern (13 bp): TATTGCATTTATT Found at i:215734214 original size:40 final size:40 Alignment explanation
Indices: 215734127--215734276 Score: 123 Period size: 40 Copynumber: 3.8 Consensus size: 40 215734117 AATTGAATGA * * * ** 215734127 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA- 1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC * * * 215734167 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC 1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC * 215734208 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC 1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC * 215734247 TAT-CGGGCTAAGACCCGAAGGCATTTGTGC 1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC 215734277 AAATCGTGAT Statistics Matches: 89, Mismatches: 13, Indels: 17 0.75 0.11 0.14 Matches are distributed among these distances: 38 1 0.01 39 28 0.31 40 60 0.67 ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22 Consensus pattern (40 bp): TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC Found at i:215738206 original size:40 final size:40 Alignment explanation
Indices: 215738161--215738289 Score: 156 Period size: 39 Copynumber: 3.3 Consensus size: 40 215738151 CGGAATATAA 215738161 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC * * * * * 215738201 CCGGATAGAATAACTCGCACGAATGCCTTC-GGCCTTAGC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC * * * 215738240 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC 215738279 CCGGATATAAT 1 CCGGATATAAT 215738290 TTCCAGCATA Statistics Matches: 73, Mismatches: 13, Indels: 6 0.79 0.14 0.07 Matches are distributed among these distances: 38 16 0.22 39 31 0.42 40 26 0.36 ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24 Consensus pattern (40 bp): CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC Found at i:215739168 original size:17 final size:19 Alignment explanation
Indices: 215739145--215739190 Score: 53 Period size: 17 Copynumber: 2.5 Consensus size: 19 215739135 AAGAAGCATG 215739145 AATCATGCTCAAGAATG-C 1 AATCATGCTCAAGAATGAC * 215739163 -ATCATGGC-CAAGTATGAC 1 AATCAT-GCTCAAGAATGAC 215739181 AATCATGCTC 1 AATCATGCTC 215739191 CTTTTCAACT Statistics Matches: 23, Mismatches: 1, Indels: 7 0.74 0.03 0.23 Matches are distributed among these distances: 17 12 0.52 18 5 0.22 19 6 0.26 ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24 Consensus pattern (19 bp): AATCATGCTCAAGAATGAC Found at i:215741501 original size:29 final size:29 Alignment explanation
Indices: 215741468--215741628 Score: 178 Period size: 29 Copynumber: 5.6 Consensus size: 29 215741458 GCGACGAGAT * 215741468 TGGCACTAAGTGTGCGTGCTGGAAATATA 1 TGGCACTAAGTGTGCGTGCTGGAAAAATA * 215741497 TGGCACTAAGTGTGCGTGCTGGAAATATA 1 TGGCACTAAGTGTGCGTGCTGGAAAAATA * 215741526 TGGCACTAAGTGTGCATGCTGGAAAAATA 1 TGGCACTAAGTGTGCGTGCTGGAAAAATA * * ** 215741555 TGACACTATGTGTGCAAGCTGGAAAAATA 1 TGGCACTAAGTGTGCGTGCTGGAAAAATA * ** * * *** 215741584 CGGCACTGGGTGTGCGAGCTTGAAGGGTA 1 TGGCACTAAGTGTGCGTGCTGGAAAAATA * 215741613 TGGCACTATGTGTGCG 1 TGGCACTAAGTGTGCG 215741629 GGCTTAAATT Statistics Matches: 115, Mismatches: 17, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 29 115 1.00 ACGTcount: A:0.27, C:0.15, G:0.32, T:0.25 Consensus pattern (29 bp): TGGCACTAAGTGTGCGTGCTGGAAAAATA Found at i:215744266 original size:18 final size:18 Alignment explanation
Indices: 215744224--215744271 Score: 60 Period size: 18 Copynumber: 2.7 Consensus size: 18 215744214 CTTGGCCCAT 215744224 TGCAGTAACAGTAAATAA 1 TGCAGTAACAGTAAATAA * * * * 215744242 AGTAGTAACAGTAATTAG 1 TGCAGTAACAGTAAATAA 215744260 TGCAGTAACAGT 1 TGCAGTAACAGT 215744272 TTAAACAGTC Statistics Matches: 24, Mismatches: 6, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 18 24 1.00 ACGTcount: A:0.44, C:0.10, G:0.21, T:0.25 Consensus pattern (18 bp): TGCAGTAACAGTAAATAA Found at i:215744695 original size:27 final size:27 Alignment explanation
Indices: 215744662--215744834 Score: 177 Period size: 27 Copynumber: 6.4 Consensus size: 27 215744652 AAGGGCATTT * * 215744662 TAGTCATTTAACCACATAAGAGCAAAA 1 TAGTCATTTTACCACATAAGGGCAAAA * * * * 215744689 GAATCATTTTACCTCATAAGGGAAAAA 1 TAGTCATTTTACCACATAAGGGCAAAA * * * 215744716 TTA-TCATTTTACCGCATAGGGGAAAAA 1 -TAGTCATTTTACCACATAAGGGCAAAA * 215744743 TTGTCATTTTACCACATAAGGGCAAAA 1 TAGTCATTTTACCACATAAGGGCAAAA * * * 215744770 CAGTCATTTCACCTCATAAGGGCAAAA 1 TAGTCATTTTACCACATAAGGGCAAAA ** * 215744797 TAGTCATTTTACTTCATAAGGGAAAAA 1 TAGTCATTTTACCACATAAGGGCAAAA * 215744824 TACTCATTTTA 1 TAGTCATTTTA 215744835 TCGATTCAGG Statistics Matches: 122, Mismatches: 22, Indels: 4 0.82 0.15 0.03 Matches are distributed among these distances: 26 1 0.01 27 120 0.98 28 1 0.01 ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29 Consensus pattern (27 bp): TAGTCATTTTACCACATAAGGGCAAAA Found at i:215744757 original size:81 final size:81 Alignment explanation
Indices: 215744662--215744834 Score: 231 Period size: 81 Copynumber: 2.1 Consensus size: 81 215744652 AAGGGCATTT * * * 215744662 TAGTCATTTAACCACATAAGAGCAAAAGAATCATTTTACCTCATAAGGGAAAAATTA-TCATTTT 1 TAGTCATTTTACCACATAAGAGCAAAACAATCATTTCACCTCATAAGGGAAAAA-TAGTCATTTT * 215744726 ACCGCATAGGGGAAAAA 65 ACCGCATAAGGGAAAAA * * * * 215744743 TTGTCATTTTACCACATAAGGGCAAAACAGTCATTTCACCTCATAAGGGCAAAATAGTCATTTTA 1 TAGTCATTTTACCACATAAGAGCAAAACAATCATTTCACCTCATAAGGGAAAAATAGTCATTTTA ** 215744808 CTTCATAAGGGAAAAA 66 CCGCATAAGGGAAAAA * 215744824 TACTCATTTTA 1 TAGTCATTTTA 215744835 TCGATTCAGG Statistics Matches: 79, Mismatches: 12, Indels: 2 0.85 0.13 0.02 Matches are distributed among these distances: 80 2 0.03 81 77 0.97 ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29 Consensus pattern (81 bp): TAGTCATTTTACCACATAAGAGCAAAACAATCATTTCACCTCATAAGGGAAAAATAGTCATTTTA CCGCATAAGGGAAAAA Found at i:215746907 original size:27 final size:27 Alignment explanation
Indices: 215746884--215747069 Score: 230 Period size: 27 Copynumber: 6.9 Consensus size: 27 215746874 CTTGATTTGT * 215746884 AAAATTACCATTTTACCCTCGATTTAC 1 AAAATTACCGTTTTACCCTCGATTTAC * * * 215746911 AGAATTACCGTTTCACCCTCAATTTAC 1 AAAATTACCGTTTTACCCTCGATTTAC * * 215746938 AAAATTACCGTTTTACCCTCAATTTAT 1 AAAATTACCGTTTTACCCTCGATTTAC * * * * 215746965 AGAATTACCATTTTACCCTTGATTTAT 1 AAAATTACCGTTTTACCCTCGATTTAC * * 215746992 AGAATTATCGTTTTACCCTCGATTTAC 1 AAAATTACCGTTTTACCCTCGATTTAC * * 215747019 AAAATTACCATTTTACCCAC-AGTTTAC 1 AAAATTACCGTTTTACCCTCGA-TTTAC 215747046 AAAATTACCGTTTTACCCTCGATT 1 AAAATTACCGTTTTACCCTCGATT 215747070 GTGAAATTAC Statistics Matches: 136, Mismatches: 21, Indels: 4 0.84 0.13 0.02 Matches are distributed among these distances: 26 1 0.01 27 134 0.99 28 1 0.01 ACGTcount: A:0.31, C:0.24, G:0.06, T:0.38 Consensus pattern (27 bp): AAAATTACCGTTTTACCCTCGATTTAC Found at i:215746942 original size:54 final size:54 Alignment explanation
Indices: 215746884--215747069 Score: 255 Period size: 54 Copynumber: 3.4 Consensus size: 54 215746874 CTTGATTTGT * * * 215746884 AAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTAC 1 AAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTAC * * ** * 215746938 AAAATTACCGTTTTACCCTCAATTTATAGAATTACCATTTTACCCTTGATTTAT 1 AAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTAC * * * * * 215746992 AGAATTATCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCACAGTTTAC 1 AAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTAC 215747046 AAAATTACCGTTTTACCCTCGATT 1 AAAATTACCGTTTTACCCTCGATT 215747070 GTGAAATTAC Statistics Matches: 112, Mismatches: 20, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 54 112 1.00 ACGTcount: A:0.31, C:0.24, G:0.06, T:0.38 Consensus pattern (54 bp): AAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTAC Found at i:215746989 original size:81 final size:81 Alignment explanation
Indices: 215746884--215747069 Score: 273 Period size: 81 Copynumber: 2.3 Consensus size: 81 215746874 CTTGATTTGT * 215746884 AAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTACAAAATTACCGT 1 AAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTACAAAATTACCAT * * 215746949 TTTACCCTCAATTTAT 66 TTTACCCACAATTTAC * * * * * * 215746965 AGAATTACCATTTTACCCTTGATTTATAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAT 1 AAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTACAAAATTACCAT * 215747030 TTTACCCACAGTTTAC 66 TTTACCCACAATTTAC * 215747046 AAAATTACCGTTTTACCCTCGATT 1 AAAATTACCATTTTACCCTCGATT 215747070 GTGAAATTAC Statistics Matches: 92, Mismatches: 13, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 81 92 1.00 ACGTcount: A:0.31, C:0.24, G:0.06, T:0.38 Consensus pattern (81 bp): AAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCAATTTACAAAATTACCAT TTTACCCACAATTTAC Found at i:215747131 original size:27 final size:27 Alignment explanation
Indices: 215747101--215747238 Score: 179 Period size: 27 Copynumber: 5.1 Consensus size: 27 215747091 TGTAGGATAG * 215747101 AATTACCAAAATACCCCTAGTTTGCAA 1 AATTACCAAAATACCCCTAGTTTGTAA 215747128 AATTACCAAAATACCCCTAGTTTGTAA 1 AATTACCAAAATACCCCTAGTTTGTAA 215747155 AATTACCAAAATACCCCTAGTTTGTAA 1 AATTACCAAAATACCCCTAGTTTGTAA * * * * * 215747182 AATTATCGAAATACCACTATTTTGTGA 1 AATTACCAAAATACCCCTAGTTTGTAA ** * 215747209 AATTACCGGAATA-CCCTCAATTTGTAA 1 AATTACCAAAATACCCCT-AGTTTGTAA 215747236 AAT 1 AAT 215747239 ACCCTTGACT Statistics Matches: 99, Mismatches: 11, Indels: 2 0.88 0.10 0.02 Matches are distributed among these distances: 26 3 0.03 27 96 0.97 ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30 Consensus pattern (27 bp): AATTACCAAAATACCCCTAGTTTGTAA Found at i:215747145 original size:54 final size:54 Alignment explanation
Indices: 215747073--215747196 Score: 160 Period size: 54 Copynumber: 2.3 Consensus size: 54 215747063 CTCGATTGTG * * * 215747073 AAATTACTGAAATGCCCCT-GTAGGATAGAATTACCAAAATACCCCTAGTTTGCA 1 AAATTACCGAAATACCCCTAGTAGG-TAAAATTACCAAAATACCCCTAGTTTGCA * ** * 215747127 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA 1 AAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCCCTAGTTTGCA * 215747181 AAATTATCGAAATACC 1 AAATTACCGAAATACC 215747197 ACTATTTTGT Statistics Matches: 60, Mismatches: 9, Indels: 2 0.85 0.13 0.03 Matches are distributed among these distances: 54 57 0.95 55 3 0.05 ACGTcount: A:0.40, C:0.22, G:0.10, T:0.27 Consensus pattern (54 bp): AAATTACCGAAATACCCCTAGTAGGTAAAATTACCAAAATACCCCTAGTTTGCA Found at i:215747293 original size:27 final size:27 Alignment explanation
Indices: 215747254--215747305 Score: 79 Period size: 27 Copynumber: 1.9 Consensus size: 27 215747244 TGACTTTCTA 215747254 AAAATTATAGAAATACCATTGGTTTAC 1 AAAATTATAGAAATACCATTGGTTTAC * 215747281 AAAATTACT-GAAATACCCTTGGTTT 1 AAAATTA-TAGAAATACCATTGGTTT 215747306 GTAGATTTAC Statistics Matches: 23, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 27 22 0.96 28 1 0.04 ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35 Consensus pattern (27 bp): AAAATTATAGAAATACCATTGGTTTAC Found at i:215747434 original size:27 final size:28 Alignment explanation
Indices: 215747359--215747435 Score: 81 Period size: 27 Copynumber: 2.9 Consensus size: 28 215747349 ACCCCTAATA * * 215747359 GGTAAAAAGACTGTAA-AGCCCTTGTAG 1 GGTAAAATGACCGTAATAGCCCTTGTAG * * 215747386 GGTAAAGTGACCGTAATA-CCCTTGTAT 1 GGTAAAATGACCGTAATAGCCCTTGTAG 215747413 GGTAAAATGA-CG-AATATGCCCTT 1 GGTAAAATGACCGTAATA-GCCCTT 215747436 ATGTTCTGTA Statistics Matches: 42, Mismatches: 5, Indels: 6 0.79 0.09 0.11 Matches are distributed among these distances: 25 4 0.10 26 2 0.05 27 35 0.83 28 1 0.02 ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26 Consensus pattern (28 bp): GGTAAAATGACCGTAATAGCCCTTGTAG Found at i:215748191 original size:16 final size:16 Alignment explanation
Indices: 215748170--215748200 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 215748160 CAAATATGGG * 215748170 CATGACATTTTGCATA 1 CATGACATATTGCATA 215748186 CATGACATATTGCAT 1 CATGACATATTGCAT 215748201 GGGATATGGG Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35 Consensus pattern (16 bp): CATGACATATTGCATA Found at i:215748315 original size:24 final size:24 Alignment explanation
Indices: 215748233--215748315 Score: 96 Period size: 25 Copynumber: 3.4 Consensus size: 24 215748223 AGGAAGTGCT * * * 215748233 AAAAGCGCTCTGCCCCAGTTTACC 1 AAAAGGGCTTTGCCCCAGTTTATC 215748257 GAAAAGGGCTTTGCCCCAGTTTATC 1 -AAAAGGGCTTTGCCCCAGTTTATC * 215748282 AGAAAGGGCTTTGCCCCAG-TTATT 1 A-AAAGGGCTTTGCCCCAGTTTATC 215748306 AAAAGAGGCT 1 AAAAG-GGCT 215748316 AGGCCTTCAG Statistics Matches: 52, Mismatches: 4, Indels: 5 0.85 0.07 0.08 Matches are distributed among these distances: 23 4 0.08 24 10 0.19 25 38 0.73 ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24 Consensus pattern (24 bp): AAAAGGGCTTTGCCCCAGTTTATC Found at i:215748515 original size:42 final size:42 Alignment explanation
Indices: 215748450--215748541 Score: 157 Period size: 42 Copynumber: 2.2 Consensus size: 42 215748440 TAGTCTCCCC * * 215748450 AAATTGGCTTGCATACATTCATTGACATTACATGTGATATTG 1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG * 215748492 AAATGGGCTTGTATACATCCATTGACATTACATGTGATATTG 1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG 215748534 AAATGGGC 1 AAATGGGC 215748542 CTAAGGGCCA Statistics Matches: 47, Mismatches: 3, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 42 47 1.00 ACGTcount: A:0.32, C:0.14, G:0.20, T:0.35 Consensus pattern (42 bp): AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG Found at i:215748600 original size:31 final size:31 Alignment explanation
Indices: 215748565--215748679 Score: 205 Period size: 31 Copynumber: 3.7 Consensus size: 31 215748555 TGTTTACAGT 215748565 AAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA 215748596 AAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA * 215748627 AAAGGCTTCGGCCCAGTGATATGATTTATGG 1 AAAGGCTTCGGCCCAGTGATATGATTTATGA * 215748658 AAAGGCTTCAGCCCAGT-ATATG 1 AAAGGCTTCGGCCCAGTGATATG 215748680 TCAAGACTAA Statistics Matches: 82, Mismatches: 2, Indels: 1 0.96 0.02 0.01 Matches are distributed among these distances: 30 5 0.06 31 77 0.94 ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTGATATGATTTATGA Found at i:215750751 original size:43 final size:43 Alignment explanation
Indices: 215750703--215750849 Score: 158 Period size: 43 Copynumber: 3.4 Consensus size: 43 215750693 GTTAGCAAGA 215750703 TGTGATTAAATGTAAGACCATGTCTGGGACATTGGCAGT-GTAT 1 TGTGATTAAATGTAAGACCATGTCTGGGACATTGGCA-TCGTAT ** * 215750746 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAA 1 TGTGATTAAATGTAAGACCATGTCTGGGACATTGGCATCG-TAT * ** * * 215750790 T-CGATTTCATGTAAGACCTTGTCTGGGACAGTGGCATCG-AT 1 TGTGATTAAATGTAAGACCATGTCTGGGACATTGGCATCGTAT 215750831 ATGTGA-TAACATGTAAGAC 1 -TGTGATTAA-ATGTAAGAC 215750850 AACATCTGGG Statistics Matches: 87, Mismatches: 12, Indels: 10 0.80 0.11 0.09 Matches are distributed among these distances: 41 1 0.01 42 3 0.03 43 80 0.92 44 3 0.03 ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31 Consensus pattern (43 bp): TGTGATTAAATGTAAGACCATGTCTGGGACATTGGCATCGTAT Found at i:215752227 original size:20 final size:20 Alignment explanation
Indices: 215752202--215752239 Score: 58 Period size: 20 Copynumber: 1.9 Consensus size: 20 215752192 GTTTATTCGC * 215752202 GATTTTCAATATTTTGTAAA 1 GATTTTCAAAATTTTGTAAA * 215752222 GATTTTTAAAATTTTGTA 1 GATTTTCAAAATTTTGTA 215752240 TTTGGATGTG Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 20 16 1.00 ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53 Consensus pattern (20 bp): GATTTTCAAAATTTTGTAAA Found at i:215753901 original size:28 final size:28 Alignment explanation
Indices: 215753869--215753937 Score: 113 Period size: 28 Copynumber: 2.5 Consensus size: 28 215753859 GCGTAGATCA * 215753869 CGAAATTACCCCTAAAGAGTAAAATTAC 1 CGAAATTACCCCTAAAGAGCAAAATTAC 215753897 CGAAATTACCCCTAAAGAGCAAAATTAC 1 CGAAATTACCCCTAAAGAGCAAAATTAC * 215753925 CGATA-TACCCCTA 1 CGAAATTACCCCTA 215753938 GGGTTTTAAA Statistics Matches: 39, Mismatches: 2, Indels: 1 0.93 0.05 0.02 Matches are distributed among these distances: 27 8 0.21 28 31 0.79 ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20 Consensus pattern (28 bp): CGAAATTACCCCTAAAGAGCAAAATTAC Found at i:215756912 original size:40 final size:40 Alignment explanation
Indices: 215756867--215756996 Score: 165 Period size: 40 Copynumber: 3.2 Consensus size: 40 215756857 CGGAATACAA 215756867 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC * * * 215756907 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC * * * 215756947 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC 1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC * 215756987 CCGGAAATAA 1 CCGGATATAA 215756997 TTTCCAGCAT Statistics Matches: 77, Mismatches: 11, Indels: 4 0.84 0.12 0.04 Matches are distributed among these distances: 39 3 0.04 40 74 0.96 ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22 Consensus pattern (40 bp): CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC Found at i:215763393 original size:20 final size:20 Alignment explanation
Indices: 215763370--215763407 Score: 58 Period size: 20 Copynumber: 1.9 Consensus size: 20 215763360 TTTATTCCGC * 215763370 GATTTTCAATATTTTGTAAA 1 GATTTTCAAAATTTTGTAAA * 215763390 GATTTTTAAAATTTTGTA 1 GATTTTCAAAATTTTGTA 215763408 TTTGGATGTG Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 20 16 1.00 ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53 Consensus pattern (20 bp): GATTTTCAAAATTTTGTAAA Found at i:215770482 original size:40 final size:40 Alignment explanation
Indices: 215770427--215770636 Score: 305 Period size: 40 Copynumber: 5.2 Consensus size: 40 215770417 AACATTGGAA 215770427 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 215770467 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 215770507 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG 1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG * * * * 215770547 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC 1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG * * * * * * 215770586 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG 1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG * 215770627 CTATATCCGG 1 ATATATCCGG 215770637 TTAAATCCCG Statistics Matches: 151, Mismatches: 17, Indels: 4 0.88 0.10 0.02 Matches are distributed among these distances: 39 2 0.01 40 149 0.99 ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22 Consensus pattern (40 bp): ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG Found at i:215772412 original size:40 final size:40 Alignment explanation
Indices: 215772333--215772575 Score: 314 Period size: 40 Copynumber: 6.1 Consensus size: 40 215772323 CGGGATTTAA * * * 215772333 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC 1 CCGGATATAG-TAACTCGCACAAATGCCTTTGGGACTTAGC * 215772372 CCGGATATAGTAACTCGCACCAATGCCTTTGGGACTTAGC 1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC * * 215772412 CCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGC 1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC * * * 215772452 CCGGATGTAATAACTCACACAAATGCCTTTGGGACTTAGC 1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC * 215772492 CCGGATATAGTAGCTCGCACAAATGCCTTTGGGACTTAGC 1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC * * * 215772532 CCGGA-ACTAGTCAC-CAGCGCAAATGCCTTTAGGACTTAGC 1 CCGGATA-TAGTAACTC-GCACAAATGCCTTTGGGACTTAGC 215772572 CCGG 1 CCGG 215772576 TTATCATCCG Statistics Matches: 181, Mismatches: 19, Indels: 7 0.87 0.09 0.03 Matches are distributed among these distances: 38 1 0.01 39 19 0.10 40 161 0.89 ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23 Consensus pattern (40 bp): CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC Found at i:215775304 original size:29 final size:28 Alignment explanation
Indices: 215775272--215775350 Score: 77 Period size: 28 Copynumber: 2.8 Consensus size: 28 215775262 ATACCCTCCG * * 215775272 AGCTCGCACACCCAGTGCCGTATTTTTCC 1 AGCTCGCACACCCAGTGCC-AATATTTCC * ** 215775301 AGCTTGCACACTTAGTGCCAATATTTCC 1 AGCTCGCACACCCAGTGCCAATATTTCC * ** 215775329 AGCACGCACACTTAGTGCCAAT 1 AGCTCGCACACCCAGTGCCAAT 215775351 CTCGTCACCA Statistics Matches: 43, Mismatches: 7, Indels: 1 0.84 0.14 0.02 Matches are distributed among these distances: 28 27 0.63 29 16 0.37 ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27 Consensus pattern (28 bp): AGCTCGCACACCCAGTGCCAATATTTCC Found at i:215775337 original size:28 final size:28 Alignment explanation
Indices: 215775296--215775350 Score: 92 Period size: 28 Copynumber: 2.0 Consensus size: 28 215775286 GTGCCGTATT ** 215775296 TTTCCAGCTTGCACACTTAGTGCCAATA 1 TTTCCAGCACGCACACTTAGTGCCAATA 215775324 TTTCCAGCACGCACACTTAGTGCCAAT 1 TTTCCAGCACGCACACTTAGTGCCAAT 215775351 CTCGTCACCA Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 28 25 1.00 ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29 Consensus pattern (28 bp): TTTCCAGCACGCACACTTAGTGCCAATA Found at i:215783333 original size:29 final size:28 Alignment explanation
Indices: 215783301--215783379 Score: 77 Period size: 28 Copynumber: 2.8 Consensus size: 28 215783291 ATACCCTCCG * * 215783301 AGCTCGCACACCCAGTGCCGTATTTTTCC 1 AGCTCGCACACCCAGTGCC-AATATTTCC * ** 215783330 AGCTTGCACACTTAGTGCCAATATTTCC 1 AGCTCGCACACCCAGTGCCAATATTTCC * ** 215783358 AGCACGCACACTTAGTGCCAAT 1 AGCTCGCACACCCAGTGCCAAT 215783380 CTCGTCACCA Statistics Matches: 43, Mismatches: 7, Indels: 1 0.84 0.14 0.02 Matches are distributed among these distances: 28 27 0.63 29 16 0.37 ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27 Consensus pattern (28 bp): AGCTCGCACACCCAGTGCCAATATTTCC Found at i:215783366 original size:28 final size:28 Alignment explanation
Indices: 215783325--215783379 Score: 92 Period size: 28 Copynumber: 2.0 Consensus size: 28 215783315 GTGCCGTATT ** 215783325 TTTCCAGCTTGCACACTTAGTGCCAATA 1 TTTCCAGCACGCACACTTAGTGCCAATA 215783353 TTTCCAGCACGCACACTTAGTGCCAAT 1 TTTCCAGCACGCACACTTAGTGCCAAT 215783380 CTCGTCACCA Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 28 25 1.00 ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29 Consensus pattern (28 bp): TTTCCAGCACGCACACTTAGTGCCAATA Found at i:215785153 original size:48 final size:50 Alignment explanation
Indices: 215785099--215785218 Score: 127 Period size: 57 Copynumber: 2.3 Consensus size: 50 215785089 CACAAAAGCT * * 215785099 CTTTT-TCCTTCTTTTTCTTTCTTCTATTTGGCCAAGAACAACATGAGAG 1 CTTTTCTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAG * 215785148 CTTTTCTCTTTTTTTTTTCTTTTTCTTTCTTCTATTCGGCCAAGAATAACATGAGAG 1 CTTTTCTC-------TTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAG * 215785205 CTTTT-TTTTTCTTT 1 CTTTTCTCTTTCTTT 215785219 CTTTTCCTTT Statistics Matches: 59, Mismatches: 4, Indels: 16 0.75 0.05 0.20 Matches are distributed among these distances: 49 12 0.20 50 2 0.03 56 1 0.02 57 44 0.75 ACGTcount: A:0.17, C:0.20, G:0.10, T:0.53 Consensus pattern (50 bp): CTTTTCTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAG Found at i:215786211 original size:28 final size:28 Alignment explanation
Indices: 215786171--215786290 Score: 168 Period size: 28 Copynumber: 4.3 Consensus size: 28 215786161 TGGGAAGTAG 215786171 TTGGGCCTGATGGGCCATATGAATGTGA 1 TTGGGCCTGATGGGCCATATGAATGTGA * * 215786199 TTGGGCCTGATGGACCATATGAAGGTGA 1 TTGGGCCTGATGGGCCATATGAATGTGA * * 215786227 GTGGGCCTGATGGGCCATGTGAATGTGA 1 TTGGGCCTGATGGGCCATATGAATGTGA * * * * 215786255 TTGGGCTTGATGGGCCATGTGAACGAGA 1 TTGGGCCTGATGGGCCATATGAATGTGA 215786283 TTGGGCCT 1 TTGGGCCT 215786291 AAAGGGGCCA Statistics Matches: 81, Mismatches: 11, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 28 81 1.00 ACGTcount: A:0.20, C:0.15, G:0.38, T:0.27 Consensus pattern (28 bp): TTGGGCCTGATGGGCCATATGAATGTGA Found at i:215786646 original size:27 final size:27 Alignment explanation
Indices: 215786616--215787046 Score: 379 Period size: 27 Copynumber: 16.1 Consensus size: 27 215786606 AAATTACTGG * 215786616 AATACCCTAGATTTGTAAAATTATCGA 1 AATACCCTCGATTTGTAAAATTATCGA * * 215786643 AATACCC-CTAATTTGGAAAATTATCGA 1 AATACCCTC-GATTTGTAAAATTATCGA * * 215786670 AATACCCTCGA-TTGTGAAGTTA-CTGA 1 AATACCCTCGATTTGTAAAATTATC-GA * 215786696 AATACCCTCGATTTG-ACAAATTATTGA 1 AATACCCTCGATTTGTA-AAATTATCGA * * 215786723 AATACCCTCGATTTGAAAAATTA-CTAA 1 AATACCCTCGATTTGTAAAATTATC-GA * 215786750 AATACCCTCGA-TTGTGAAATTA-CTGA 1 AATACCCTCGATTTGTAAAATTATC-GA * * * 215786776 AATACCCTCAATTTGTGAAATTA-CAAA 1 AATACCCTCGATTTGTAAAATTATC-GA * * * 215786803 AATACCC-CGATTTATGAAATTACCGA 1 AATACCCTCGATTTGTAAAATTATCGA * * * 215786829 AACACCCTCAATTTGTAAAATTACCGA 1 AATACCCTCGATTTGTAAAATTATCGA * * 215786856 AATA-CCTTGATTTGTAAAATTATTGA 1 AATACCCTCGATTTGTAAAATTATCGA ** 215786882 AATACCCTTAATTATG--AAATTA-CTGA 1 AATACCCTCGATT-TGTAAAATTATC-GA * * 215786908 AATACCCTCGATTTATAAAATTACCGA 1 AATACCCTCGATTTGTAAAATTATCGA * * 215786935 AATATCTTCGATTTGTAAAATTATCGA 1 AATACCCTCGATTTGTAAAATTATCGA * 215786962 AATACCC-CTGATTTGTAAAATTACCGA 1 AATACCCTC-GATTTGTAAAATTATCGA * * 215786989 AATACCCTCGATTTCTAAAATTACCGA 1 AATACCCTCGATTTGTAAAATTATCGA * * * 215787016 AACACACC-CAATTTGTAAAATTATCAA 1 AATAC-CCTCGATTTGTAAAATTATCGA 215787043 AATA 1 AATA 215787047 ACCTTTGTAG Statistics Matches: 335, Mismatches: 49, Indels: 40 0.79 0.12 0.09 Matches are distributed among these distances: 25 2 0.01 26 105 0.31 27 220 0.66 28 8 0.02 ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31 Consensus pattern (27 bp): AATACCCTCGATTTGTAAAATTATCGA Found at i:215786710 original size:53 final size:53 Alignment explanation
Indices: 215786606--215787001 Score: 310 Period size: 53 Copynumber: 7.4 Consensus size: 53 215786596 TAATAAAGAG * * * * * 215786606 AAATTACTGGAATACCCTAGATTTGTAAAATTA-TCGAAATACCC-CTAATTTGGA 1 AAATTACCGAAATACCCTCGA-TTGTGAAATTACT-GAAATACCCTC-GATTTGGA * * 215786660 AAATTATCGAAATACCCTCGATTGTGAAGTTACTGAAATACCCTCGATTT-GA 1 AAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGGA ** * 215786712 CAAATTATTGAAATACCCTCGATT-TGAAAAATTACTAAAATACCCTCGA-TTGTG- 1 -AAATTACCGAAATACCCTCGATTGTG--AAATTACTGAAATACCCTCGATTTG-GA * * ** * 215786766 AAATTACTGAAATACCCTCAATTTGTGAAATTACAAAAATACCC-CGATTTATG- 1 AAATTACCGAAATACCCTCGA-TTGTGAAATTACTGAAATACCCTCGATTT-GGA * * * * * * 215786819 AAATTACCGAAACACCCTCAATTTGTAAAATTACCGAAATA-CCTTGATTTGTA 1 AAATTACCGAAATACCCTCGA-TTGTGAAATTACTGAAATACCCTCGATTTGGA ** ** * ** 215786872 AAATTATTGAAATACCCTTAATTATGAAATTACTGAAATACCCTCGATTTATA 1 AAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGGA * * * * 215786925 AAATTACCGAAATATCTTCGATTTGTAAAATTA-TCGAAATACCC-CTGATTTGTA 1 AAATTACCGAAATACCCTCGA-TTGTGAAATTACT-GAAATACCCTC-GATTTGGA 215786979 AAATTACCGAAATACCCTCGATT 1 AAATTACCGAAATACCCTCGATT 215787002 TCTAAAATTA Statistics Matches: 283, Mismatches: 42, Indels: 35 0.79 0.12 0.10 Matches are distributed among these distances: 52 25 0.09 53 171 0.60 54 84 0.30 55 3 0.01 ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32 Consensus pattern (53 bp): AAATTACCGAAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGGA Found at i:215786743 original size:80 final size:78 Alignment explanation
Indices: 215786606--215787046 Score: 410 Period size: 80 Copynumber: 5.5 Consensus size: 78 215786596 TAATAAAGAG * * * * 215786606 AAATTACTGGAATACCCTAGATTTGTAAAATTATCGAAATACCCCTAATTTGGAAAATTATCGAA 1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCC-GATTTGAAAAATTA-CGAA * 215786671 ATACCCTCGATTGTG 64 ATACCCTCGATTGTA * * * 215786686 AAGTTACTGAAATACCCTCGATTTG-ACAAATTATTGAAATACCCTCGATTTGAAAAATTACTAA 1 AAATTACTGAAATACCCTCGATTTGTA-AAATTATCGAAATACCC-CGATTTGAAAAATTAC-GA * 215786750 AATACCCTCGATTGTG 63 AATACCCTCGATTGTA * * * * 215786766 AAATTACTGAAATACCCTCAATTTGTGAAATTA-CAAAAATACCCCGATTT-ATGAAATTACCGA 1 AAATTACTGAAATACCCTCGATTTGTAAAATTATC-GAAATACCCCGATTTGA-AAAATTA-CGA * * 215786829 AACACCCTCAATTTGTA 63 AATACCCTCGA-TTGTA * * * ** 215786846 AAATTACCGAAATA-CCTTGATTTGTAAAATTATTGAAATACCCTTAATTATG--AAATTACTGA 1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCC-CGATT-TGAAAAATTAC-GA * 215786908 AATACCCTCGATTTATA 63 AATACCCTCGA-TTGTA * * * * 215786925 AAATTACCGAAATATCTTCGATTTGTAAAATTATCGAAATACCCCTGATTTGTAAAATTACCGAA 1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCC-GATTTGAAAAATTA-CGAA * 215786990 ATACCCTCGATTTCTA 64 ATACCCTCGA-TTGTA * * * * 215787006 AAATTACCGAAACACACC-CAATTTGTAAAATTATCAAAATA 1 AAATTACTGAAATAC-CCTCGATTTGTAAAATTATCGAAATA 215787047 ACCTTTGTAG Statistics Matches: 303, Mismatches: 39, Indels: 37 0.80 0.10 0.10 Matches are distributed among these distances: 78 2 0.01 79 85 0.28 80 154 0.51 81 60 0.20 82 2 0.01 ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31 Consensus pattern (78 bp): AAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCCGATTTGAAAAATTACGAAAT ACCCTCGATTGTA Found at i:215786843 original size:106 final size:107 Alignment explanation
Indices: 215786606--215786997 Score: 424 Period size: 106 Copynumber: 3.7 Consensus size: 107 215786596 TAATAAAGAG * * * * * 215786606 AAATTACTGGAATACCCTAGATTTGTAAAATTA-TCGAAATACCC-CTAATTTGGAAAATTA-TC 1 AAATTACCGAAATACCCTCGATTTGTAAAATTACT-GAAATACCCTC-GATTTGTAAAATTACT- * * * 215786668 GAAATACCCTCGATTGTGAAGTTACTGAAATACCCTCGATTTGA-C 63 GAAATACCCTCAATTGTGAAATTACTGAAATACCCTCGATTT-ATA ** * * * 215786713 AAATTATTGAAATACCCTCGATTTGAAAAATTACTAAAATACCCTCGA-TTGTGAAATTACTGAA 1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAA ** * 215786777 ATACCCTCAATTTGTGAAATTACAAAAATACCC-CGATTTATG 66 ATACCCTCAA-TTGTGAAATTACTGAAATACCCTCGATTTATA * * * * * 215786819 AAATTACCGAAACACCCTCAATTTGTAAAATTACCGAAATA-CCTTGATTTGTAAAATTATTGAA 1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAA * * 215786883 ATACCCTTAATTATGAAATTACTGAAATACCCTCGATTTATA 66 ATACCCTCAATTGTGAAATTACTGAAATACCCTCGATTTATA * * * 215786925 AAATTACCGAAATATCTTCGATTTGTAAAATTA-TCGAAATACCC-CTGATTTGTAAAATTACCG 1 AAATTACCGAAATACCCTCGATTTGTAAAATTACT-GAAATACCCTC-GATTTGTAAAATTACTG 215786988 AAATACCCTC 64 AAATACCCTC 215786998 GATTTCTAAA Statistics Matches: 238, Mismatches: 37, Indels: 20 0.81 0.13 0.07 Matches are distributed among these distances: 105 25 0.11 106 127 0.53 107 84 0.35 108 2 0.01 ACGTcount: A:0.39, C:0.19, G:0.11, T:0.32 Consensus pattern (107 bp): AAATTACCGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAA ATACCCTCAATTGTGAAATTACTGAAATACCCTCGATTTATA Found at i:215787064 original size:28 final size:27 Alignment explanation
Indices: 215787029--215787117 Score: 74 Period size: 27 Copynumber: 3.3 Consensus size: 27 215787019 ACACCCAATT * 215787029 TGTAAAATTA-TCAAAATAACCTTTGTAG 1 TGTAAAATTACT-AAAAT-ACCCTTGTAG * * 215787057 TGTAAAATTACTAGAATACCCTTGTAT 1 TGTAAAATTACTAAAATACCCTTGTAG * ** * 215787084 TGTAAAATGACCGACATA-CCTTGTAG 1 TGTAAAATTACTAAAATACCCTTGTAG * 215787110 GGTAAAAT 1 TGTAAAAT 215787118 GATTGTTTTG Statistics Matches: 50, Mismatches: 10, Indels: 4 0.78 0.16 0.06 Matches are distributed among these distances: 26 14 0.28 27 21 0.42 28 14 0.28 29 1 0.02 ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33 Consensus pattern (27 bp): TGTAAAATTACTAAAATACCCTTGTAG Found at i:215787089 original size:27 final size:28 Alignment explanation
Indices: 215787028--215787091 Score: 78 Period size: 27 Copynumber: 2.3 Consensus size: 28 215787018 CACACCCAAT * 215787028 TTGTAAAATTATCAAAATAACCTTTGTA 1 TTGTAAAATTATCAAAATAACCCTTGTA * * 215787056 GTGTAAAATTA-CTAGAAT-ACCCTTGTA 1 TTGTAAAATTATC-AAAATAACCCTTGTA 215787083 TTGTAAAAT 1 TTGTAAAAT 215787092 GACCGACATA Statistics Matches: 31, Mismatches: 4, Indels: 3 0.82 0.11 0.08 Matches are distributed among these distances: 27 17 0.55 28 14 0.45 ACGTcount: A:0.41, C:0.11, G:0.11, T:0.38 Consensus pattern (28 bp): TTGTAAAATTATCAAAATAACCCTTGTA Found at i:215794211 original size:40 final size:39 Alignment explanation
Indices: 215794046--215794229 Score: 138 Period size: 40 Copynumber: 4.6 Consensus size: 39 215794036 AAATTGAATG * * * 215794046 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T 1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT * * * * * * 215794086 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T * * * * * 215794126 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT * 215794166 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT * * * 215794205 GATATCCGGGTTAAGTCCCGTAGGC 1 -ATATCCGGGCTAAGACCCGAAGGC 215794230 CTTGGTGCGG Statistics Matches: 113, Mismatches: 26, Indels: 10 0.76 0.17 0.07 Matches are distributed among these distances: 37 4 0.04 38 2 0.02 39 3 0.03 40 104 0.92 ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22 Consensus pattern (39 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT Found at i:215794254 original size:80 final size:81 Alignment explanation
Indices: 215794086--215794274 Score: 186 Period size: 80 Copynumber: 2.4 Consensus size: 81 215794076 GCTGGAAATT * * * * 215794086 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA 1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA * 215794151 TTCGTGCGAGTCATTC 66 TTCGTGCGAGTCATCC * * * * * * 215794167 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC 1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC * * * * 215794230 CTTGGTGCGGGTTA-CC 65 ATTCGTGCGAGTCATCC * * * 215794246 ATAACCGGGCTATGTCCCGAAGGCGATTG 1 ATAACCGGGCTAAGACCCGAAGGCAATTG 215794275 AACGAGTAGC Statistics Matches: 86, Mismatches: 20, Indels: 5 0.77 0.18 0.05 Matches are distributed among these distances: 79 2 0.02 80 84 0.98 ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23 Consensus pattern (81 bp): ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA TTCGTGCGAGTCATCC Found at i:215801956 original size:40 final size:40 Alignment explanation
Indices: 215801870--215802019 Score: 132 Period size: 40 Copynumber: 3.8 Consensus size: 40 215801860 AATTGAATGA * * ** 215801870 TATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATTA- 1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC * * * 215801909 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC 1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC * 215801950 -ATCCGGGCTAAGACCCGAAGG-AATTCGTGCGAGTCATTC 1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC * 215801989 TATCCGGGCTAAGACCCGAAGGCATTTGTGC 1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC 215802020 AAATCGTGAT Statistics Matches: 90, Mismatches: 12, Indels: 17 0.76 0.10 0.14 Matches are distributed among these distances: 38 1 0.01 39 17 0.19 40 69 0.77 41 3 0.03 ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22 Consensus pattern (40 bp): TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC Found at i:215802033 original size:40 final size:39 Alignment explanation
Indices: 215801869--215802051 Score: 129 Period size: 40 Copynumber: 4.6 Consensus size: 39 215801859 AAATTGAATG * * 215801869 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T 1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT * * * * * * 215801908 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T * * * * * * 215801948 ACATCCGGGCTAAGACCCGAAGGAATTCGTGCGAGTCATT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT * 215801988 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT * * * 215802027 GATATCCGGGTTAAGTCCCGTAGGC 1 -ATATCCGGGCTAAGACCCGAAGGC 215802052 CTTGGTGCGG Statistics Matches: 111, Mismatches: 27, Indels: 11 0.74 0.18 0.07 Matches are distributed among these distances: 37 4 0.04 38 2 0.02 39 15 0.14 40 90 0.81 ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22 Consensus pattern (39 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT Found at i:215808554 original size:40 final size:40 Alignment explanation
Indices: 215808510--215808727 Score: 325 Period size: 40 Copynumber: 5.5 Consensus size: 40 215808500 CACTCGAATA * 215808510 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG 215808550 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG 215808590 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG * * 215808630 CCTTTGGGACTTAGCCCGGATA-TGGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG * * ** * 215808670 CCTTCGGG-CTTAGCTCGGAATTAGCCACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG 215808709 CCTTCGGGACTTAGCCCGG 1 CCTTCGGGACTTAGCCCGG 215808728 TTATCAATCC Statistics Matches: 164, Mismatches: 10, Indels: 8 0.90 0.05 0.04 Matches are distributed among these distances: 38 1 0.01 39 33 0.20 40 129 0.79 41 1 0.01 ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG Found at i:215808594 original size:80 final size:80 Alignment explanation
Indices: 215808471--215808727 Score: 326 Period size: 80 Copynumber: 3.2 Consensus size: 80 215808461 AAGCCAAGTA * * * * * * * 215808471 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATACCTTCGGGACATAGCCCGGATA-T 1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACT 215808533 AGTAACTCGCACAAATG 64 AGTAACTCGCACAAATG 215808550 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTA 1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTA 215808614 GTAACTCGCACAAATG 65 GTAACTCGCACAAATG * * * * 215808630 CCTTTGGGACTTAGCCCGGATATGGTAACTCGCACAAATGCCTTCGGG-CTTAGCTCGGAATTAG 1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG ** * 215808694 CCACTAGCACAAATG 66 TAACTCGCACAAATG 215808709 CCTTCGGGACTTAGCCCGG 1 CCTTCGGGACTTAGCCCGG 215808728 TTATCAATCC Statistics Matches: 158, Mismatches: 15, Indels: 10 0.86 0.08 0.05 Matches are distributed among these distances: 79 59 0.37 80 98 0.62 81 1 0.01 ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23 Consensus pattern (80 bp): CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG TAACTCGCACAAATG Found at i:215809940 original size:54 final size:53 Alignment explanation
Indices: 215809864--215809990 Score: 218 Period size: 54 Copynumber: 2.4 Consensus size: 53 215809854 CTCAAAGCTC * 215809864 TTTTTCCTTCTTTTTCTTTCTTCTATTCGACCAAGAACAACATGAGAGCTTTTT 1 TTTTTCTTTCTTTTTCTTTCTTCTATTCGACCAAGAACAACATGAGAGC-TTTT * 215809918 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTT 1 TTTTTCTTTCTTTTTCTTTCTTCTATTCGACCAAGAACAACATGAGAGCTTTT 215809971 TTTTTCTTTCTTTTTTCTTT 1 TTTTTCTTTC-TTTTTCTTT 215809991 TTCATCATCA Statistics Matches: 70, Mismatches: 2, Indels: 2 0.95 0.03 0.03 Matches are distributed among these distances: 53 14 0.20 54 56 0.80 ACGTcount: A:0.17, C:0.20, G:0.09, T:0.54 Consensus pattern (53 bp): TTTTTCTTTCTTTTTCTTTCTTCTATTCGACCAAGAACAACATGAGAGCTTTT Found at i:215820392 original size:20 final size:20 Alignment explanation
Indices: 215820367--215820409 Score: 77 Period size: 20 Copynumber: 2.1 Consensus size: 20 215820357 ATCAGTATTC 215820367 TTATCCTGAATTTTAGGATT 1 TTATCCTGAATTTTAGGATT * 215820387 TTATCCTGAATTTTAGTATT 1 TTATCCTGAATTTTAGGATT 215820407 TTA 1 TTA 215820410 ATTTGGATTT Statistics Matches: 22, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 20 22 1.00 ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53 Consensus pattern (20 bp): TTATCCTGAATTTTAGGATT Found at i:215820901 original size:26 final size:25 Alignment explanation
Indices: 215820853--215820914 Score: 72 Period size: 24 Copynumber: 2.4 Consensus size: 25 215820843 AGAAAACAGA 215820853 GTGGACAAAACAAAAACCACAAATAAT 1 GTGGACAAAACAAAAACCAC-AA-AAT * * * 215820880 GTGGACAAAA-TAAAACTACAAAGT 1 GTGGACAAAACAAAAACCACAAAAT 215820904 GTGGACAAAAC 1 GTGGACAAAAC 215820915 TGCGATAATG Statistics Matches: 31, Mismatches: 3, Indels: 4 0.82 0.08 0.11 Matches are distributed among these distances: 24 12 0.39 25 2 0.06 26 7 0.23 27 10 0.32 ACGTcount: A:0.55, C:0.16, G:0.16, T:0.13 Consensus pattern (25 bp): GTGGACAAAACAAAAACCACAAAAT Found at i:215824697 original size:16 final size:17 Alignment explanation
Indices: 215824664--215824697 Score: 52 Period size: 17 Copynumber: 2.1 Consensus size: 17 215824654 AACAAATCTG * 215824664 ATAATTTTAAATACAAT 1 ATAATTATAAATACAAT 215824681 ATAATTATAAA-ACAAT 1 ATAATTATAAATACAAT 215824697 A 1 A 215824698 AAAAAATTTA Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 16 6 0.38 17 10 0.62 ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35 Consensus pattern (17 bp): ATAATTATAAATACAAT Found at i:215830892 original size:27 final size:28 Alignment explanation
Indices: 215830862--215830931 Score: 106 Period size: 27 Copynumber: 2.5 Consensus size: 28 215830852 ATAATAAGTC * 215830862 CGCACACTTAGTGCTATATAATC-AGCT 1 CGCACACTTAGTGCTATATAATCAAACT * * 215830889 CGCACACATAGTGCTATATAATCAAATT 1 CGCACACTTAGTGCTATATAATCAAACT 215830917 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 215830932 GTACAAATTT Statistics Matches: 38, Mismatches: 4, Indels: 1 0.88 0.09 0.02 Matches are distributed among these distances: 27 22 0.58 28 16 0.42 ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29 Consensus pattern (28 bp): CGCACACTTAGTGCTATATAATCAAACT Found at i:215838874 original size:29 final size:29 Alignment explanation
Indices: 215838842--215838919 Score: 102 Period size: 29 Copynumber: 2.7 Consensus size: 29 215838832 ATACCCTCCG ** * 215838842 AGCTCGCACACCCAGTGCCGTATTTTTCC 1 AGCTCGCACACTTAGTGCCGTATATTTCC * * 215838871 AGCTTGCACACTTAGTGCCATATATTTCC 1 AGCTCGCACACTTAGTGCCGTATATTTCC * 215838900 AGCACGCACACTTAGTGCCG 1 AGCTCGCACACTTAGTGCCG 215838920 ATCTCGTCAC Statistics Matches: 41, Mismatches: 8, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 29 41 1.00 ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27 Consensus pattern (29 bp): AGCTCGCACACTTAGTGCCGTATATTTCC Found at i:215853730 original size:28 final size:28 Alignment explanation
Indices: 215853661--215853761 Score: 114 Period size: 28 Copynumber: 3.5 Consensus size: 28 215853651 GACAAGATTG * * * * 215853661 GCACTAAGTGTGCGGGTTTAAAATTGTACA 1 GCACTAAGTGTGCGAGTTT--GATTATATA 215853691 GCACTAAGTGTGCGAGTTTGATTATATA 1 GCACTAAGTGTGCGAGTTTGATTATATA * 215853719 GCACTAAGTGTGCGAG-TTGAATACATATA 1 GCACTAAGTGTGCGAGTTTG-AT-TATATA 215853748 GCACTAAGTGTGCG 1 GCACTAAGTGTGCG 215853762 GATTCACTAT Statistics Matches: 64, Mismatches: 5, Indels: 5 0.86 0.07 0.07 Matches are distributed among these distances: 27 3 0.05 28 24 0.38 29 19 0.30 30 18 0.28 ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30 Consensus pattern (28 bp): GCACTAAGTGTGCGAGTTTGATTATATA Found at i:215855508 original size:27 final size:26 Alignment explanation
Indices: 215855470--215855551 Score: 101 Period size: 27 Copynumber: 3.0 Consensus size: 26 215855460 AAGCGTCCTA * 215855470 GTGGCTATGCCACAATTATCTGATCTG 1 GTGGCTCTGCCAC-ATTATCTGATCTG 215855497 GTGGCTCTGCCACGATTATCTGTATCTG 1 GTGGCTCTGCCAC-ATTATCTG-ATCTG * * * 215855525 GTGACTCTGTCACATTATCTGTTCTG 1 GTGGCTCTGCCACATTATCTGATCTG 215855551 G 1 G 215855552 CAGCCATGCT Statistics Matches: 49, Mismatches: 5, Indels: 3 0.86 0.09 0.05 Matches are distributed among these distances: 26 5 0.10 27 28 0.57 28 16 0.33 ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37 Consensus pattern (26 bp): GTGGCTCTGCCACATTATCTGATCTG Found at i:215867254 original size:40 final size:40 Alignment explanation
Indices: 215867082--215867247 Score: 237 Period size: 40 Copynumber: 4.2 Consensus size: 40 215867072 AACCCAAGTA * * * * * 215867082 CCTTCGGAATTTAG-CCTGATATAG-CAACTCGCACGAATG 1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG * * 215867121 CCTTCGGGACTTAGCCCAGACATAGTCACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG 215867161 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG * 215867201 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG 1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG 215867241 CCTTCGG 1 CCTTCGG 215867248 ATCTTAGTCC Statistics Matches: 116, Mismatches: 9, Indels: 3 0.91 0.07 0.02 Matches are distributed among these distances: 39 12 0.10 40 103 0.89 41 1 0.01 ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG Found at i:215875953 original size:39 final size:38 Alignment explanation
Indices: 215875851--215875959 Score: 132 Period size: 39 Copynumber: 2.8 Consensus size: 38 215875841 CTGGAAATTA * * * 215875851 TATCCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGCTAC 1 TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGT-G-TAC 215875891 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-TATC 1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGTA-C 215875929 TATCCGGGCTAAGACCCGAAGGCATTTGTGC 1 TATCCGGGCTAAGACCCGAAGGCA-TTGTGC 215875960 ACGTGATTAT Statistics Matches: 62, Mismatches: 3, Indels: 9 0.84 0.04 0.12 Matches are distributed among these distances: 37 2 0.03 38 1 0.02 39 50 0.81 40 9 0.15 ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22 Consensus pattern (38 bp): TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGTAC Found at i:215878899 original size:39 final size:40 Alignment explanation
Indices: 215878764--215878947 Score: 225 Period size: 40 Copynumber: 4.7 Consensus size: 40 215878754 TCGAATGATG * * * 215878764 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTAAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA * * 215878804 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT 1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA 215878844 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA * * * 215878882 TCCGAGTTAAGTACCGAAGGCATTTGTGCGAGTTACTATAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA * 215878923 -CCGGGCTATGTCCCGAAGGCATTTG 1 TCCGGGCTAAGTCCCGAAGGCATTTG 215878948 AACGAGTAGC Statistics Matches: 124, Mismatches: 14, Indels: 12 0.83 0.09 0.08 Matches are distributed among these distances: 38 25 0.20 39 18 0.15 40 71 0.57 41 10 0.08 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26 Consensus pattern (40 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA Found at i:215878899 original size:78 final size:80 Alignment explanation
Indices: 215878764--215878945 Score: 239 Period size: 78 Copynumber: 2.3 Consensus size: 80 215878754 TCGAATGATG * * 215878764 TCCGGGCTAAGTCCCAAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT 1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT 215878829 GTGCGAGTTACTA-A 66 GTGCGAGTTACTATA * * * 215878843 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCC-GAGTTAAG-TACCGAAGGCA 1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGA-CTAAGAT-CCGAAGGCA 215878904 TTTGTGCGAGTTACTATA 63 TTTGTGCGAGTTACTATA * * 215878922 ACCGGGCTATGTCCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATT 215878946 TGAACGAGTA Statistics Matches: 91, Mismatches: 7, Indels: 9 0.85 0.07 0.08 Matches are distributed among these distances: 77 3 0.03 78 50 0.55 79 27 0.30 80 11 0.12 ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25 Consensus pattern (80 bp): TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT GTGCGAGTTACTATA Found at i:215884313 original size:43 final size:43 Alignment explanation
Indices: 215884204--215884316 Score: 156 Period size: 43 Copynumber: 2.6 Consensus size: 43 215884194 ATATCATACA * * 215884204 ATGCCAACGTCCCAGACATGGTCTTACATGCAATCACATATCG 1 ATGCCAACGTCCCAGACGTGGTCTTACACGCAATCACATATCG ** * 215884247 ATGCCATTGTCCTAGACAG-GGTCTTACACGCAATCACATATCG 1 ATGCCAACGTCCCAGAC-GTGGTCTTACACGCAATCACATATCG * 215884290 ATGCCAACATCCCAGACGTGGTCTTAC 1 ATGCCAACGTCCCAGACGTGGTCTTAC 215884317 TCAAGAACAC Statistics Matches: 59, Mismatches: 9, Indels: 4 0.82 0.12 0.06 Matches are distributed among these distances: 42 1 0.02 43 58 0.98 ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24 Consensus pattern (43 bp): ATGCCAACGTCCCAGACGTGGTCTTACACGCAATCACATATCG Found at i:215884328 original size:43 final size:43 Alignment explanation
Indices: 215884204--215884331 Score: 113 Period size: 43 Copynumber: 3.0 Consensus size: 43 215884194 ATATCATACA * * 215884204 ATGCCAACGTCCCAGACATGGTCTTACATGC-A-ATCACATATCG 1 ATGCCAACGTCCCAGACGTGGTCTTAC-T-CAAGAACACATATCG ** * * 215884247 ATGCCATTGTCCTAGACAG-GGTCTTA--CACGCAATCACATATCG 1 ATGCCAACGTCCCAGAC-GTGGTCTTACTCAAG-AA-CACATATCG * 215884290 ATGCCAACATCCCAGACGTGGTCTTACTCAAGAACACATATC 1 ATGCCAACGTCCCAGACGTGGTCTTACTCAAGAACACATATC 215884332 AAAAATCCTA Statistics Matches: 66, Mismatches: 11, Indels: 16 0.71 0.12 0.17 Matches are distributed among these distances: 39 1 0.02 42 2 0.03 43 58 0.88 44 2 0.03 45 3 0.05 ACGTcount: A:0.30, C:0.30, G:0.16, T:0.23 Consensus pattern (43 bp): ATGCCAACGTCCCAGACGTGGTCTTACTCAAGAACACATATCG Found at i:215886229 original size:40 final size:40 Alignment explanation
Indices: 215886102--215886231 Score: 129 Period size: 40 Copynumber: 3.2 Consensus size: 40 215886092 ATGCTGGAAA * * * * 215886102 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG 1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG * * * ** 215886142 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA 1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG * * 215886182 TTCTATCCAGGCTAAGACCCGAAGGCATTTGTGC-ACATGG 1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG 215886222 TTATATCCGG 1 TTATATCCGG 215886232 TTATATTCCG Statistics Matches: 69, Mismatches: 19, Indels: 4 0.75 0.21 0.04 Matches are distributed among these distances: 39 2 0.03 40 67 0.97 ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24 Consensus pattern (40 bp): TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG Found at i:215888928 original size:55 final size:56 Alignment explanation
Indices: 215888837--215888942 Score: 142 Period size: 55 Copynumber: 1.9 Consensus size: 56 215888827 TCCTCTCGAG * * * 215888837 CATATGTTATAGATTGGATTTAGCCCGGACGGGTAATCTAGATTAAGCTCTTTAGAT 1 CATATGTCATAGA-TGGATTTAGCCCGGACGAGTAATCTAGACTAAGCTCTTTAGAT * * * 215888894 CATATGTCATAGA-GGATTTAGCCTGGACTAGTAATCTTGACTAAGCTCT 1 CATATGTCATAGATGGATTTAGCCCGGACGAGTAATCTAGACTAAGCTCT 215888943 ATTCAGTATA Statistics Matches: 43, Mismatches: 6, Indels: 2 0.84 0.12 0.04 Matches are distributed among these distances: 55 31 0.72 57 12 0.28 ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34 Consensus pattern (56 bp): CATATGTCATAGATGGATTTAGCCCGGACGAGTAATCTAGACTAAGCTCTTTAGAT Found at i:215889051 original size:59 final size:60 Alignment explanation
Indices: 215888906--215889051 Score: 186 Period size: 59 Copynumber: 2.4 Consensus size: 60 215888896 TATGTCATAG * * * * 215888906 AGGATTTAGCCTGGACTAGTAATCTTGACTAAGCTCTATTCAGTATATATATATTGGAGGC 1 AGGATTTAGCCTGGACTGGTAATCCTCACTAAGCTCTATTCAG-ATATATATATTGGAGAC * * * * 215888967 AGGATTTAGCCTGGACTGGTTATCCTCACTAAGGTCTATTGAG-TATATATGTTGGAGAC 1 AGGATTTAGCCTGGACTGGTAATCCTCACTAAGCTCTATTCAGATATATATATTGGAGAC * * 215889026 AGGATTTAGCTTGGATTGGTAATCCT 1 AGGATTTAGCCTGGACTGGTAATCCT 215889052 GTTGTATATA Statistics Matches: 74, Mismatches: 11, Indels: 2 0.85 0.13 0.02 Matches are distributed among these distances: 59 37 0.50 61 37 0.50 ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35 Consensus pattern (60 bp): AGGATTTAGCCTGGACTGGTAATCCTCACTAAGCTCTATTCAGATATATATATTGGAGAC Found at i:215890675 original size:24 final size:24 Alignment explanation
Indices: 215890648--215890702 Score: 76 Period size: 24 Copynumber: 2.3 Consensus size: 24 215890638 TCACATGACA 215890648 ATTGATATATGAAAATATGAGATG 1 ATTGATATATGAAAATATGAGATG ** * 215890672 ATTGATATATGGCAATATGGGATG 1 ATTGATATATGAAAATATGAGATG 215890696 A-TGATAT 1 ATTGATAT 215890703 TTGTACATGA Statistics Matches: 28, Mismatches: 3, Indels: 1 0.88 0.09 0.03 Matches are distributed among these distances: 23 6 0.21 24 22 0.79 ACGTcount: A:0.40, C:0.02, G:0.24, T:0.35 Consensus pattern (24 bp): ATTGATATATGAAAATATGAGATG Found at i:215898108 original size:29 final size:29 Alignment explanation
Indices: 215898075--215898148 Score: 76 Period size: 29 Copynumber: 2.6 Consensus size: 29 215898065 CCTTCGAGCT * * 215898075 CGCACACCCAGTGCCGTATTTTTCCAGCA 1 CGCACACCCAGTGCCATATATTTCCAGCA * ** * 215898104 TGCACACTTAGTGTCATATATTTCCAGCA 1 CGCACACCCAGTGCCATATATTTCCAGCA ** 215898133 CGCACACTTAGTGCCA 1 CGCACACCCAGTGCCA 215898149 ATCTCGTCAC Statistics Matches: 37, Mismatches: 8, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 29 37 1.00 ACGTcount: A:0.24, C:0.32, G:0.16, T:0.27 Consensus pattern (29 bp): CGCACACCCAGTGCCATATATTTCCAGCA Found at i:215905225 original size:68 final size:70 Alignment explanation
Indices: 215905153--215905350 Score: 294 Period size: 71 Copynumber: 2.8 Consensus size: 70 215905143 ACACCCTGTA * * * * 215905153 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG 1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG 215905215 ATAAAT 65 ATAAAT * 215905221 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG 1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG 215905286 ATAAAT 65 ATAAAT * 215905292 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG 1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG 215905351 AGACAAATCG Statistics Matches: 121, Mismatches: 5, Indels: 5 0.92 0.04 0.04 Matches are distributed among these distances: 68 24 0.20 69 3 0.02 70 1 0.01 71 93 0.77 ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20 Consensus pattern (70 bp): GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA TAAAT Found at i:215905264 original size:41 final size:41 Alignment explanation
Indices: 215905219--215905336 Score: 98 Period size: 41 Copynumber: 3.1 Consensus size: 41 215905209 TGAAAGATAA 215905219 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC 1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC * * * * * 215905260 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A 1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC 215905290 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC 1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC 215905331 ATGTAG 1 ATGTAG 215905337 ACAAGAGAGC Statistics Matches: 54, Mismatches: 10, Indels: 26 0.60 0.11 0.29 Matches are distributed among these distances: 29 1 0.02 30 8 0.15 31 9 0.17 32 1 0.02 33 3 0.06 34 1 0.02 35 1 0.02 36 1 0.02 37 1 0.02 38 3 0.06 39 1 0.02 40 9 0.17 41 14 0.26 42 1 0.02 ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21 Consensus pattern (41 bp): ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC Found at i:215905276 original size:71 final size:71 Alignment explanation
Indices: 215905187--215905350 Score: 328 Period size: 71 Copynumber: 2.3 Consensus size: 71 215905177 GAGATGTATC 215905187 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA 1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA 215905252 AGGACA 66 AGGACA 215905258 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA 1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA 215905323 AGGACA 66 AGGACA 215905329 CCATGTAGACAAGAGAGCTACG 1 CCATGTAGACAAGAGAGCTACG 215905351 AGACAAATCG Statistics Matches: 93, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 71 93 1.00 ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19 Consensus pattern (71 bp): CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA AGGACA Found at i:215912741 original size:68 final size:70 Alignment explanation
Indices: 215912669--215912866 Score: 294 Period size: 71 Copynumber: 2.8 Consensus size: 70 215912659 ACACCCTGTA * * * * 215912669 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG 1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG 215912731 ATAAAT 65 ATAAAT * 215912737 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG 1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG 215912802 ATAAAT 65 ATAAAT * 215912808 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG 1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG 215912867 AGACAAATCG Statistics Matches: 121, Mismatches: 5, Indels: 5 0.92 0.04 0.04 Matches are distributed among these distances: 68 24 0.20 69 3 0.02 70 1 0.01 71 93 0.77 ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20 Consensus pattern (70 bp): GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA TAAAT Found at i:215912780 original size:41 final size:41 Alignment explanation
Indices: 215912735--215912852 Score: 98 Period size: 41 Copynumber: 3.1 Consensus size: 41 215912725 TGAAAGATAA 215912735 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC 1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC * * * * * 215912776 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A 1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC 215912806 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC 1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC 215912847 ATGTAG 1 ATGTAG 215912853 ACAAGAGAGC Statistics Matches: 54, Mismatches: 10, Indels: 26 0.60 0.11 0.29 Matches are distributed among these distances: 29 1 0.02 30 8 0.15 31 9 0.17 32 1 0.02 33 3 0.06 34 1 0.02 35 1 0.02 36 1 0.02 37 1 0.02 38 3 0.06 39 1 0.02 40 9 0.17 41 14 0.26 42 1 0.02 ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21 Consensus pattern (41 bp): ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC Found at i:215912792 original size:71 final size:71 Alignment explanation
Indices: 215912703--215912866 Score: 328 Period size: 71 Copynumber: 2.3 Consensus size: 71 215912693 GAGATGTATC 215912703 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA 1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA 215912768 AGGACA 66 AGGACA 215912774 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA 1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA 215912839 AGGACA 66 AGGACA 215912845 CCATGTAGACAAGAGAGCTACG 1 CCATGTAGACAAGAGAGCTACG 215912867 AGACAAATCG Statistics Matches: 93, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 71 93 1.00 ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19 Consensus pattern (71 bp): CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA AGGACA Done.