Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 685 of 770
Found at i:215925892 original size:39 final size:40
Alignment explanation
Indices: 215925794--215925975 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
215925784 AATGATGTCT
* * *
215925794 GGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCC
*
215925834 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
215925874 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * * *
215925913 GGGTTAAGTCCCAAAGGCACTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
215925953 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
215925976 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 14, Indels: 12
0.82 0.09 0.08
Matches are distributed among these distances:
39 36 0.30
40 78 0.64
41 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:215925930 original size:79 final size:81
Alignment explanation
Indices: 215925794--215925975 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 81
215925784 AATGATGTCT
* * * *
215925794 GGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCACTTGT
*
215925858 GCGAGTTACTA-ATTCC
66 GCGAGTTACTATA-ACC
* * **
215925874 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCAAAGGCACTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCAAAGGCACTTG
215925936 TGCGAGTTACTATAACC
65 TGCGAGTTACTATAACC
*
215925953 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
215925976 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCACTTGT
GCGAGTTACTATAACC
Found at i:215932547 original size:26 final size:26
Alignment explanation
Indices: 215932529--215932600 Score: 83
Period size: 26 Copynumber: 2.7 Consensus size: 26
215932519 GGGCATATTC
* *
215932529 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACC-TACAGGGATATTACG
*
215932556 GTCACTTTACCTACAGGGGCT-TTACG
1 GTCACTTTACCTACA-GGGATATTACG
215932582 GTCACTTTACCCTACAGGG
1 GTCACTTTA-CCTACAGGG
215932601 GCTTTACGGT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
26 21 0.51
27 20 0.49
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGATATTACG
Found at i:215932628 original size:27 final size:26
Alignment explanation
Indices: 215932529--215932621 Score: 125
Period size: 27 Copynumber: 3.5 Consensus size: 26
215932519 GGGCATATTC
*
215932529 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
215932556 GTCACTTTACCTACAGGGGCTTTACG
1 GTCACTTTACCTACAGGGGCTTTACG
215932582 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
**
215932609 GTCTTTTTACCTA
1 GTCACTTTACCTA
215932622 ATAGGGGTTT
Statistics
Matches: 61, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
26 26 0.43
27 35 0.57
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:215932702 original size:27 final size:27
Alignment explanation
Indices: 215932672--215932779 Score: 94
Period size: 27 Copynumber: 3.9 Consensus size: 27
215932662 GTAAATCTAC
215932672 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
215932699 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
215932725 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
215932755 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
215932780 AAAAATTGAG
Statistics
Matches: 66, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.02
27 40 0.61
28 7 0.11
29 17 0.26
30 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:215932777 original size:56 final size:54
Alignment explanation
Indices: 215932676--215932833 Score: 158
Period size: 54 Copynumber: 2.9 Consensus size: 54
215932666 ATCTACAAAC
* * *
215932676 CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTTCAGTAA-TTTGTAAACCAGTGGTATTT-TGGTAATTTTTA-AAAAT
* * *
215932732 CAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAA-TTTTAAAAAT
1 CAAGGGTATTTCAGTAA-TTTGTAAACCAGTGGTATTTTGGTAATTTTTAAAAAT
** * **
215932786 TGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTT
1 CAAGGGTATTTCAGTAATTT-GTAAACCAGTGGTATTTTGGTAATTTT
215932834 ACAAACTAGG
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
53 3 0.04
54 37 0.44
55 9 0.11
56 36 0.42
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAATTTGTAAACCAGTGGTATTTTGGTAATTTTTAAAAAT
Found at i:215932785 original size:27 final size:27
Alignment explanation
Indices: 215932755--215932888 Score: 141
Period size: 27 Copynumber: 5.0 Consensus size: 27
215932745 GTAACTTTGT
*
215932755 AAATCAGGGGTATTTTGGTAATTTTAA
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * *
215932782 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* *
215932809 AAACCAGTGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
215932836 AAA-CTAGGGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
*
215932863 AAAT-TGAGGGTATTTCT-GTAATTTTA
1 AAATCAG-GGGTATTT-TGGTAATTTTA
215932889 AATCGAGGGT
Statistics
Matches: 90, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
26 3 0.03
27 85 0.94
28 2 0.02
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:215932821 original size:54 final size:54
Alignment explanation
Indices: 215932762--215932890 Score: 156
Period size: 54 Copynumber: 2.4 Consensus size: 54
215932752 TGTAAATCAG
*
215932762 GGGTATTTTGGTAATTTTAAAAA-TTGAGGGTATTTCGGTAATTTCACAAA-CCA
1 GGGTATTTTGGTAATTTTAAAAACTAG-GGGTATTTCGGTAATTTCACAAATCCA
* * * **
215932815 GTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTAAAAACTAGGGGTATTTCGGTAATTTCACAAATCCA
215932870 GGGTATTTCT-GTAATTTTAAA
1 GGGTATTT-TGGTAATTTTAAA
215932891 TCGAGGGTAA
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
53 1 0.02
54 59 0.91
55 5 0.08
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTAAAAACTAGGGGTATTTCGGTAATTTCACAAATCCA
Found at i:215932924 original size:27 final size:27
Alignment explanation
Indices: 215932880--215933141 Score: 318
Period size: 27 Copynumber: 9.8 Consensus size: 27
215932870 GGGTATTTCT
*
215932880 GTAATT-T-TAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
215932905 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
215932932 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
215932958 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTCTGTAAATCGAGGGTAAAACA
* * *
215932986 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
215933013 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
**
215933040 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
215933067 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
215933094 GTAATTATGTAAATCGGGGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
215933120 GATAATTCTGTAAATCG-GGGTA
1 G-TAATTCTGTAAATCGAGGGTA
215933142 CTTTGGTAAT
Statistics
Matches: 208, Mismatches: 24, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
25 6 0.03
26 8 0.04
27 193 0.93
28 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:215932989 original size:81 final size:81
Alignment explanation
Indices: 215932887--215933141 Score: 370
Period size: 81 Copynumber: 3.2 Consensus size: 81
215932877 TCTGTAATTT
** * *
215932887 TAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGACGG
1 TAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATATAAATCGAGGG
*
215932952 TAAAACGATAATTTTG
66 TAAAACGATAATTCTG
* * *
215932968 TAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAACGGTAATTTTATAAATCGAGGG
1 TAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATATAAATCGAGGG
215933033 TAAAAC-AGTAATTCTG
66 TAAAACGA-TAATTCTG
* * * * *
215933049 TAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGG
1 TAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATATAAATCGAGGG
215933114 TAAAACGATAATTCTG
66 TAAAACGATAATTCTG
215933130 TAAATCG-GGGTA
1 TAAATCGAGGGTA
215933142 CTTTGGTAAT
Statistics
Matches: 157, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
80 6 0.04
81 150 0.96
82 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
TAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTATATAAATCGAGGG
TAAAACGATAATTCTG
Found at i:215933177 original size:27 final size:26
Alignment explanation
Indices: 215933147--215933234 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 26
215933137 GGGTACTTTG
215933147 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
215933174 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
215933201 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCA
215933228 GTAATTT
1 GTAATTT
215933235 AGTAAACTAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.08
27 46 0.88
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:215933188 original size:53 final size:54
Alignment explanation
Indices: 215933131--215933234 Score: 124
Period size: 54 Copynumber: 1.9 Consensus size: 54
215933121 ATAATTCTGT
* *
215933131 AAATCG-GGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
215933184 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTT
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTT
215933235 AGTAAACTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
53 12 0.28
54 31 0.72
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:215936308 original size:24 final size:24
Alignment explanation
Indices: 215936256--215936421 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
215936246 GCTTTATCAT
*
215936256 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
215936281 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
215936305 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
215936328 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
215936352 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
215936376 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
215936399 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
215936422 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
23 43 0.33
24 74 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:215936332 original size:47 final size:48
Alignment explanation
Indices: 215936255--215936421 Score: 241
Period size: 47 Copynumber: 3.5 Consensus size: 48
215936245 TGCTTTATCA
* *
215936255 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
215936304 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
215936351 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
215936398 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
215936422 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
47 70 0.64
48 26 0.24
49 13 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:215936359 original size:71 final size:71
Alignment explanation
Indices: 215936256--215936421 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
215936246 GCTTTATCAT
* *
215936256 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
215936320 GCCCTTTA
64 GCCCTTTA
* * *
215936328 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
215936393 CCTTTA
66 CCTTTA
215936399 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
215936422 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 76 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:215936493 original size:9 final size:9
Alignment explanation
Indices: 215936479--215936535 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
215936469 ATCTCGTGTG
215936479 CATATCATA
1 CATATCATA
*
215936488 CATATCATGTG
1 CATATCA--TA
215936499 CATATCATA
1 CATATCATA
* *
215936508 CATGTCATGTG
1 CATATCA--TA
215936519 CATATCATA
1 CATATCATA
215936528 CATATCAT
1 CATATCAT
215936536 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:215936498 original size:20 final size:20
Alignment explanation
Indices: 215936475--215936537 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
215936465 GAACATCTCG
215936475 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
215936495 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
215936515 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
215936535 TGT
1 TGT
215936538 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:215936620 original size:25 final size:25
Alignment explanation
Indices: 215936574--215936621 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
215936564 ATATATAAAC
* * * *
215936574 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
215936599 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
215936622 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:215937864 original size:27 final size:27
Alignment explanation
Indices: 215937773--215937856 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
215937763 GGGCATATTC
*
215937773 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
215937800 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
*
215937827 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
215937854 GTC
1 GTC
215937857 TTTTTACCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:215937873 original size:27 final size:26
Alignment explanation
Indices: 215937773--215937866 Score: 118
Period size: 27 Copynumber: 3.5 Consensus size: 26
215937763 GGGCATATTC
*
215937773 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
215937800 GTCACTTTACCTTACAGGGGCTTTACG
1 GTCACTTTACC-TACAGGGGCTTTACG
215937827 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
**
215937854 GTCTTTTTACCTA
1 GTCACTTTACCTA
215937867 ATAGGGGTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
26 4 0.07
27 54 0.89
28 3 0.05
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:215937948 original size:27 final size:27
Alignment explanation
Indices: 215937922--215938490 Score: 172
Period size: 27 Copynumber: 21.0 Consensus size: 27
215937912 ATCTACAAAC
*
215937922 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* * *
215937949 CAATGGTATTTCTATTATTTTTAG-AAAGT
1 CAAGGGTATTTC-AGTAATTTT-GTAAA-T
*
215937978 CAAGGGTATTTCTA-TAACTTTGTAAAT
1 CAAGGGTATTTC-AGTAATTTTGTAAAT
* ** **
215938005 CAGGGGTATTTTGGTAATTTTAAAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ***
215938032 TAAGGGTATTTCAGTAATTTCACAAA-
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** **
215938058 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTCAGTAATTTTGTAAAT
* ** **
215938085 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTCAGTAATTTTGTAAAT
** *
215938113 TGAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** *
215938140 CGAGGGTAAAAT-AGTAATTCTGTAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
** * *
215938167 CAAGGGTAAAAT-AGTAATTCTATAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
* * ***
215938194 CGACGGTAAAAC-GATAATTTTGTAAAT
1 CAAGGGTATTTCAG-TAATTTTGTAAAT
* *** *
215938221 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*** * *
215938248 CAAGGGTAAAACGGTAATTTTATAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** *
215938275 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** * *
215938302 CGAGGGTAAAACGGTAATTTTGGAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** * *
215938329 CGAGGGTAAAACGGTAATTATGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ** * *
215938356 CAGGGGTAAAATGA-TAATTCTGTAAAT
1 CAAGGGT-ATTTCAGTAATTTTGTAAAT
** * ** *
215938383 CGGGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCAGTAATTTTGTAAAT
**
215938410 CGAA-GGTATTTCAGTAATTTTACAAAT
1 C-AAGGGTATTTCAGTAATTTTGTAAAT
* *
215938437 CGAGGGTATTTCAGT-ATTTT-TACAAA
1 CAAGGGTATTTCAGTAATTTTGTA-AAT
*
215938463 CTAAGGGTATTTCGGTAATTTTAGTAAA
1 C-AAGGGTATTTCAGTAATTTT-GTAAA
215938491 CTAAAGTATT
Statistics
Matches: 436, Mismatches: 83, Indels: 44
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.00
26 19 0.04
27 368 0.84
28 30 0.07
29 16 0.04
30 2 0.00
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:215938121 original size:54 final size:53
Alignment explanation
Indices: 215937897--215938133 Score: 147
Period size: 54 Copynumber: 4.4 Consensus size: 53
215937887 TCATCCTACA
* * * * * ***
215937897 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTAAAAACTAAGGGTATTTCAGTAATTTCACAAACC
* ** * * * ** *
215937950 AATGGTATTTCTATTATTTTTAGAAAGTCAAGGGTATTTCTA-TAACTTT-GTAAATC
1 -AGGGTATTT-TGGTAATTTTAAAAACT-AAGGGTATTTC-AGTAA-TTTCACAAACC
*
215938006 AGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCAGTAATTTCACAAACC
1 A-GGGTATTTTGGTAATTTTAAAAACTAAGGGTATTTCAGTAATTTCACAAACC
* * ** * **
215938060 AGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 AG-GGTATTTTGGTAATTTTAAAAACTAAGGGTATTTCAGTAATTTCACAAA-CC
215938115 AGGGTATTTCT-GTAATTTT
1 AGGGTATTT-TGGTAATTTT
215938134 GTAAATCGAG
Statistics
Matches: 145, Mismatches: 28, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
53 5 0.03
54 84 0.58
55 25 0.17
56 27 0.19
57 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTAAAAACTAAGGGTATTTCAGTAATTTCACAAACC
Found at i:215938157 original size:54 final size:54
Alignment explanation
Indices: 215938126--215938390 Score: 352
Period size: 54 Copynumber: 4.9 Consensus size: 54
215938116 GGGTATTTCT
* ** * * *
215938126 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * *
215938180 GTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
215938234 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
215938288 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGGAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
215938342 GTAATTATGTAAATC-AGGGGTAAAATGATAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTTTGTAAATCGAGGGTA
215938391 CTTTGGTAAT
Statistics
Matches: 186, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 1 0.01
54 185 0.99
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:215938157 original size:81 final size:81
Alignment explanation
Indices: 215938006--215938158 Score: 191
Period size: 81 Copynumber: 1.9 Consensus size: 81
215937996 TTTGTAAATC
***
215938006 AGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCAGTAATTTCACAAACCAGTGGTAAAAT
*
215938071 GGTAATTTTACAAACT
66 AGTAATTTTACAAACT
* * * *** *
215938087 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAG-GGTAAAA
1 AGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCAGTAATTTCACAAA-CCAGTGGTAAAA
215938151 TAGTAATT
65 TAGTAATT
215938159 CTGTAAATCA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
81 57 0.95
82 3 0.05
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCAGTAATTTCACAAACCAGTGGTAAAAT
AGTAATTTTACAAACT
Found at i:215938174 original size:81 final size:81
Alignment explanation
Indices: 215938097--215938390 Score: 342
Period size: 81 Copynumber: 3.6 Consensus size: 81
215938087 AGGGGTATTT
* * *** * *
215938097 TGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTG
1 TGGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
215938162 TAAATCAAGGGTAAAA
66 TAAATCAAGGGTAAAA
* * *
215938178 TAGTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCT
1 TGGTAATTTTATAAATCGAGGGTAAAACAG-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCT
215938242 GTAAATCAAGGGTAAAA
65 GTAAATCAAGGGTAAAA
* * * *
215938259 CGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTG
1 TGGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
* *
215938324 GAAATCGAGGGTAAAA
66 TAAATCAAGGGTAAAA
* * * * * *
215938340 CGGTAATTATGTAAATC-AGGGGTAAAA-TGATAATTCTGTAAATCGGGGGTA
1 TGGTAATTTTATAAATCGA-GGGTAAAACAG-TAATTTTGTAAATCGAGGGTA
215938391 CTTTGGTAAT
Statistics
Matches: 187, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
80 3 0.02
81 183 0.98
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (81 bp):
TGGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTG
TAAATCAAGGGTAAAA
Found at i:215938444 original size:81 final size:81
Alignment explanation
Indices: 215938099--215938444 Score: 270
Period size: 81 Copynumber: 4.3 Consensus size: 81
215938089 GGGTATTTTG
* * *** * * ** * **
215938099 GTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
*
215938164 AATC-AAGGGTAAAATA
66 AATCGAA-GGTAAAACA
* * * * * **
215938180 GTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 GTAATTTTATAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAC
*
215938244 AAATC-AAGGGTAAAACG
65 AAATCGAA-GGTAAAACA
**
215938261 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGGA
1 GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
* *
215938326 AATCGAGGGTAAAACG
66 AATCGAAGGTAAAACA
* * * * ****
215938342 GTAATTATGTAAATC-AGGGGTAAAA-TGATAATTCTGTAAATCGGGGGTACTTTGGTAATTTTA
1 GTAATTTTATAAATCGA-GGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTA
* ***
215938405 CAAGTCGAAGGTATTTCA
64 CAAATCGAAGGTAAAACA
*
215938423 GTAATTTTACAAATCGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
215938445 TTTCAGTATT
Statistics
Matches: 223, Mismatches: 36, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
80 3 0.01
81 217 0.97
82 3 0.01
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (81 bp):
GTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACA
AATCGAAGGTAAAACA
Found at i:215948818 original size:25 final size:25
Alignment explanation
Indices: 215948785--215948833 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
215948775 ATTAGTAGTG
*
215948785 ATTATGTGATGATTAAATATTTTTT
1 ATTACGTGATGATTAAATATTTTTT
215948810 ATTACGTGATGATTAAATATTTTT
1 ATTACGTGATGATTAAATATTTTT
215948834 CTAGTTAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.53
Consensus pattern (25 bp):
ATTACGTGATGATTAAATATTTTTT
Found at i:215950898 original size:80 final size:80
Alignment explanation
Indices: 215950814--215950962 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
215950804 TATGGTAACC
* * * *
215950814 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
215950878 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
215950894 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
215950959 CCGG
66 CCGG
215950963 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:215950904 original size:40 final size:38
Alignment explanation
Indices: 215950855--215950962 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
215950845 ATCACGATTT
*
215950855 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
215950895 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
215950935 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
215950963 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:215951851 original size:17 final size:19
Alignment explanation
Indices: 215951828--215951873 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
215951818 AAGAAGCATG
215951828 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
215951846 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
215951864 AATCATGCTC
1 AATCATGCTC
215951874 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:215956817 original size:1 final size:1
Alignment explanation
Indices: 215956811--215956849 Score: 78
Period size: 1 Copynumber: 39.0 Consensus size: 1
215956801 TGACTGATAC
215956811 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
215956850 CGGAACTTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:215961073 original size:28 final size:28
Alignment explanation
Indices: 215961004--215961104 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
215960994 GACAAGATTG
* * * *
215961004 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
215961034 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
215961062 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
215961091 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
215961105 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:215968992 original size:28 final size:28
Alignment explanation
Indices: 215968923--215969023 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
215968913 GACAAGATTG
* * * *
215968923 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
215968953 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
215968981 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
215969010 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
215969024 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:215982425 original size:28 final size:28
Alignment explanation
Indices: 215982356--215982456 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
215982346 GACAAGATTG
* * * *
215982356 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
215982386 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
215982414 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
215982443 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
215982457 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:215983826 original size:19 final size:19
Alignment explanation
Indices: 215983802--215983841 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
215983792 GTTAACCCTC
215983802 GTGTCCGACACCGGCGTCG
1 GTGTCCGACACCGGCGTCG
215983821 GTGTCCGACACCGGCGTCG
1 GTGTCCGACACCGGCGTCG
215983840 GT
1 GT
215983842 CACGAGTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.10, C:0.35, G:0.38, T:0.17
Consensus pattern (19 bp):
GTGTCCGACACCGGCGTCG
Found at i:215987005 original size:41 final size:40
Alignment explanation
Indices: 215986930--215987074 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
215986920 CCGCACCAAG
* * * * * *
215986930 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
215986970 GCCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
215987011 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
215987051 GCCTTC-GGTC-TAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
215987075 TTTTCAGCAT
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
38 12 0.14
39 4 0.05
40 40 0.45
41 32 0.36
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:215995152 original size:13 final size:13
Alignment explanation
Indices: 215995134--215995162 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
215995124 TTTAGTTTAA
215995134 TTAGTTAATTAGT
1 TTAGTTAATTAGT
215995147 TTAGTTAATTAGT
1 TTAGTTAATTAGT
215995160 TTA
1 TTA
215995163 ATAAGCAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:216003692 original size:40 final size:40
Alignment explanation
Indices: 216003648--216003828 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
216003638 GCTACTCGTT
* *
216003648 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
216003688 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
216003728 C-AATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * *
216003766 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAAC-TCGCA
*
216003807 CAAA-GCCTTCGAGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
216003829 AGACATCATT
Statistics
Matches: 118, Mismatches: 13, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
38 23 0.19
39 21 0.18
40 63 0.53
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:216003768 original size:78 final size:79
Alignment explanation
Indices: 216003650--216003828 Score: 211
Period size: 78 Copynumber: 2.3 Consensus size: 79
216003640 TACTCGTTCA
* * * *
216003650 AATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGGA
*
216003714 TTTAGTAAC-TCGCAC
64 TTTAGTAACTTAGCAC
**
216003729 AATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGAT
*
216003793 TTAGTCACTTAGCAC
65 TTAGTAACTTAGCAC
* *
216003808 AAAGCCTTCGAGACTTAGCCC
1 AATGCCTTCG-GGCTTAGCCC
216003829 AGACATCATT
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 4 0.05
78 48 0.56
79 25 0.29
80 9 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
AATGCCTTCGGGCTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGATT
TAGTAACTTAGCAC
Found at i:216010946 original size:46 final size:46
Alignment explanation
Indices: 216010845--216010932 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
216010835 TGTAACCCGC
* * *
216010845 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
216010891 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
216010933 AACCATCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:216014760 original size:40 final size:40
Alignment explanation
Indices: 216014679--216014782 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
216014669 TCGCAACGAA
* *
216014679 TGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
* *** *
216014719 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
* *
216014759 TGTC-TCGGGGCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
216014783 CATTCAATTT
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 18 0.33
40 36 0.67
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACCACCAGCACAAT
Found at i:216017843 original size:16 final size:18
Alignment explanation
Indices: 216017807--216017843 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
216017797 GTGGATGATT
216017807 TATTATGTTTTATACATA
1 TATTATGTTTTATACATA
216017825 TATTATGTTTT-TA-ATA
1 TATTATGTTTTATACATA
216017841 TAT
1 TAT
216017844 GTTGACTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 2 0.11
18 11 0.58
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (18 bp):
TATTATGTTTTATACATA
Found at i:216027366 original size:26 final size:26
Alignment explanation
Indices: 216027326--216027381 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
216027316 TTAACACGGG
*
216027326 CATGCAACACGACTGTGCCCACCGAC
1 CATGCAACACAACTGTGCCCACCGAC
216027352 CATGCAACACAACTGTGCCCACCGAC
1 CATGCAACACAACTGTGCCCACCGAC
216027378 CATG
1 CATG
216027382 GTCGAGTCTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.41, G:0.18, T:0.12
Consensus pattern (26 bp):
CATGCAACACAACTGTGCCCACCGAC
Found at i:216032258 original size:30 final size:30
Alignment explanation
Indices: 216032224--216032281 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
216032214 CTCGAGCCAA
*
216032224 GGGCAAAAGTGTAAATATGTAAAAGTTTAG
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAG
* * *
216032254 GGGCAAAATTGTAATTTTGCAAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
216032282 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAG
Found at i:216032859 original size:68 final size:68
Alignment explanation
Indices: 216032745--216032871 Score: 177
Period size: 68 Copynumber: 1.9 Consensus size: 68
216032735 TAGATGGTAT
* * *
216032745 GTAGCTAGGTCACATGTGTAATACGGGATGTATACCATGTGTACAAGAGAGATACGAGACATTAT
1 GTAGCTAGGTCACATGGGTAATACAGGATGTACACCATGTGTACAAGAGAGATACGAGACATTAT
216032810 GAG
66 GAG
* *
216032813 GTAGCTAGGTCACATGGGTAATACTATG-TGTACACCATGTAG-ACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGGGTAATAC-AGGATGTACACCATGT-GTACAAGAGAGATACGAGA
216032872 TAAATGTAGC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
68 50 0.96
69 2 0.04
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.24
Consensus pattern (68 bp):
GTAGCTAGGTCACATGGGTAATACAGGATGTACACCATGTGTACAAGAGAGATACGAGACATTAT
GAG
Found at i:216037328 original size:68 final size:63
Alignment explanation
Indices: 216037242--216037460 Score: 217
Period size: 64 Copynumber: 3.4 Consensus size: 63
216037232 TGTAAACGGA
* * *
216037242 TGTATACCATGTGTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCGCATGGGTGATACT
1 TGTACACCATGTGTACAAGAGAGCTACGAG--A-TA--AAGTAGCTAGGTCGCATGGGTGGTACT
216037307 ATG
61 ATG
* * * * *
216037310 TGTACACCATGTAG-ACAAGAGAGCTACGAGATAATGTAGCTAGGTTGCATGCGTGGTTCCAGTG
1 TGTACACCATGT-GTACAAGAGAGCTACGAGATAAAGTAGCTAGGTCGCATGGGTGGTACTA-TG
* * * * * *
216037374 AAGGACACCATGT-AACAAGAGAGCTACGAGATAAAGTGGCTAGGTCACATGGGTGGTACTAAG
1 -TGTACACCATGTGTACAAGAGAGCTACGAGATAAAGTAGCTAGGTCGCATGGGTGGTACTATG
*
216037437 TGTTCACCATGTGTACAAGAGAGC
1 TGTACACCATGTGTACAAGAGAGC
216037461 CAAAATTATG
Statistics
Matches: 125, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
62 9 0.07
63 33 0.26
64 42 0.34
65 12 0.10
66 1 0.01
68 27 0.22
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.23
Consensus pattern (63 bp):
TGTACACCATGTGTACAAGAGAGCTACGAGATAAAGTAGCTAGGTCGCATGGGTGGTACTATG
Found at i:216043775 original size:40 final size:40
Alignment explanation
Indices: 216043728--216043929 Score: 309
Period size: 40 Copynumber: 5.0 Consensus size: 40
216043718 GGCTTTAACT
** *
216043728 GGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
**
216043768 GGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
216043808 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
216043848 GGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
216043888 GGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
216043928 GG
1 GG
216043930 TTATCATCCG
Statistics
Matches: 152, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.01
40 151 0.99
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:216051827 original size:40 final size:39
Alignment explanation
Indices: 216051760--216051922 Score: 247
Period size: 40 Copynumber: 4.1 Consensus size: 39
216051750 CGGGCTTTAA
* *
216051760 CCGGATATAGCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC
*
216051799 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGC
216051839 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
*
216051879 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
216051919 CCGG
1 CCGG
216051923 TTATCATCCG
Statistics
Matches: 115, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 12 0.10
40 102 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:216062941 original size:29 final size:29
Alignment explanation
Indices: 216062905--216063126 Score: 399
Period size: 29 Copynumber: 7.7 Consensus size: 29
216062895 TGTTGAAAAA
* *
216062905 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
* *
216062934 CTCGCACACGTAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
216062963 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
216062992 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
216063021 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
*
216063050 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
216063079 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
216063108 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
216063127 TATTCATTCG
Statistics
Matches: 187, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 187 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:216063357 original size:40 final size:40
Alignment explanation
Indices: 216063300--216063543 Score: 346
Period size: 40 Copynumber: 6.1 Consensus size: 40
216063290 CGAATACACG
* * *
216063300 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* * *
216063340 TCACTAGCACGAATGCTCTTCGGGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* * *
216063380 TCACTAGCACGAATGCTCTT-GGGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
216063419 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
216063459 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
216063499 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
216063539 TCACT
1 TCACT
216063544 CTCAATTCTC
Statistics
Matches: 194, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 38 0.20
40 156 0.80
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:216063456 original size:119 final size:120
Alignment explanation
Indices: 216063300--216063543 Score: 346
Period size: 119 Copynumber: 2.0 Consensus size: 120
216063290 CGAATACACG
* * *
216063300 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
* * *
216063365 CTTTGCCCGGATACATCACTAGCACGAATGCTCTT-GGGACTTTGCCCGGATACA
66 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* * * *
216063419 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATATCACTAGCATGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
* * * * *
216063484 CTTAGTCCGGATATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
66 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
216063539 TCACT
1 TCACT
216063544 CTCAATTCTC
Statistics
Matches: 109, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
119 89 0.82
120 20 0.18
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (120 bp):
TCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:216065415 original size:37 final size:37
Alignment explanation
Indices: 216065362--216065452 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
216065352 TATAAAAGAA
216065362 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
216065399 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
216065436 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
216065453 TTCCAAGTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:216065586 original size:40 final size:41
Alignment explanation
Indices: 216065542--216065677 Score: 111
Period size: 40 Copynumber: 3.2 Consensus size: 41
216065532 CATATATTTT
216065542 ACATT-AGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATTCAGCCATTAGGCCTTATCACATATACATACACTTTC
* * *
216065582 ACATTCA-CCACATCGGCCATTAGGC-C-T-TACATACACTTTC
1 ACATTCAGCCA-TTAGGCC-TTA-TCACATATACATACACTTTC
216065622 ACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATT-----CA---GCCATTAGGCCTTATCACATATACATACACTTTC
216065671 ACATTCA
1 ACATTCA
216065678 TCGCATTGGC
Statistics
Matches: 74, Mismatches: 6, Indels: 28
0.69 0.06 0.26
Matches are distributed among these distances:
40 26 0.35
41 7 0.09
42 4 0.05
43 1 0.01
44 2 0.03
45 2 0.03
46 1 0.01
47 4 0.05
48 6 0.08
49 21 0.28
ACGTcount: A:0.31, C:0.32, G:0.08, T:0.29
Consensus pattern (41 bp):
ACATTCAGCCATTAGGCCTTATCACATATACATACACTTTC
Found at i:216065603 original size:49 final size:49
Alignment explanation
Indices: 216065548--216065704 Score: 215
Period size: 49 Copynumber: 3.4 Consensus size: 49
216065538 TTTTACATTA
216065548 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
216065597 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
216065637 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
216065686 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
216065705 CACATATGTA
Statistics
Matches: 95, Mismatches: 4, Indels: 18
0.81 0.03 0.15
Matches are distributed among these distances:
40 37 0.39
41 1 0.01
42 1 0.01
43 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 52 0.55
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:216071895 original size:40 final size:40
Alignment explanation
Indices: 216071829--216071995 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
216071819 AAATTGAATG
* * *
216071829 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
216071868 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
216071908 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
216071948 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
216071988 ATATCCGG
1 ATATCCGG
216071996 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:216079969 original size:40 final size:39
Alignment explanation
Indices: 216079826--216079994 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 39
216079816 AGAAATTGAA
* * * ** *
216079826 TATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAAT
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGC-GAGTGAC
* * *
216079866 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
216079906 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
216079946 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
216079986 TATATCCGG
1 TATATCCGG
216079995 TTATATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 4 0.04
40 102 0.94
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:216085184 original size:50 final size:48
Alignment explanation
Indices: 216085055--216085375 Score: 233
Period size: 46 Copynumber: 6.8 Consensus size: 48
216085045 CATGGGTAAA
* *
216085055 GTGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTC
1 GTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCC
* *
216085103 GATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATAACC
1 G-TGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATC-T--CC
* *
216085154 GTGTTGATGCCATGTCCTAGACATGGTCTTACACT-GAC-A-CATCT-C
1 GTGTCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCATCTCC
* * * * *
216085199 GTAGCCGAT-ACATATCCCAGACAT-GTCTTATACTGGCT-T-ATCTCCC
1 GT-GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCT-CC
* * * * *
216085245 GAGGCTGATG-CATATCCCAGGCAT-GTCTTACACTAGC-ACTC-TCTCA
1 GTGTC-GATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCTCC
* ** * * *
216085291 ATGTCGATGCCATGTCCCAGACATGGTCTTACACCGGCTCTCATAATGC
1 GTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-CTCC
*
216085340 G-GGCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT
1 GTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
216085376 TACACAAATG
Statistics
Matches: 216, Mismatches: 35, Indels: 46
0.73 0.12 0.15
Matches are distributed among these distances:
44 14 0.06
45 22 0.10
46 60 0.28
47 31 0.14
48 12 0.06
49 43 0.20
50 32 0.15
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCC
Found at i:216085322 original size:137 final size:142
Alignment explanation
Indices: 216085069--216085324 Score: 337
Period size: 137 Copynumber: 1.8 Consensus size: 142
216085059 CGATGCCATG
* * *
216085069 TCCCAGACATGGTCTTACACTGGCTATCATCTTCGATGCCGATGCCATGTCCCAGACATGGTCTT
1 TCCCAGACATGGTCTTACACTGGCTATCATCTCCGAGGCCGATGCCATATCCCAGACATGGTCTT
* * *
216085134 ACACTAGCTCTCACATAACCGTGTTGATGCCATGTCCTAGACATGGTCTTACACTGACACATCTC
66 ACACTAGCACTCACATAA-C-TGTCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTC
216085199 GTAGCCGATACATA
129 GTAGCCGATACATA
* * *
216085213 TCCCAGACAT-GTCTTATACTGGCT-T-ATCTCCCGAGGCTGATG-CATATCCCAGGCAT-GTCT
1 TCCCAGACATGGTCTTACACTGGCTATCATCT-CCGAGGCCGATGCCATATCCCAGACATGGTCT
*
216085273 TACACTAGCACTCTC-TCAA-TGTCGATGCCATGTCCCAGACATGGTCTTACAC
65 TACACTAGCACTCACAT-AACTGTCGATGCCATGTCCCAGACATGGTCTTACAC
216085325 CGGCTCTCAT
Statistics
Matches: 100, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
137 31 0.31
139 1 0.01
140 19 0.19
141 16 0.16
142 10 0.10
143 13 0.13
144 10 0.10
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (142 bp):
TCCCAGACATGGTCTTACACTGGCTATCATCTCCGAGGCCGATGCCATATCCCAGACATGGTCTT
ACACTAGCACTCACATAACTGTCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGT
AGCCGATACATA
Found at i:216087177 original size:26 final size:26
Alignment explanation
Indices: 216087148--216087229 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
216087138 TGATACAAAT
216087148 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
216087174 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
216087200 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
216087226 TGAT
1 TGAT
216087230 GGGAATTTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:216095276 original size:25 final size:25
Alignment explanation
Indices: 216095248--216095351 Score: 185
Period size: 25 Copynumber: 4.2 Consensus size: 25
216095238 ATTGATACAA
216095248 ATGATAATGGTTAGGTAAATGTTCC
1 ATGATAATGGTTAGGTAAATGTTCC
216095273 ATGATAATGGTTAGGTAAAT-TT-C
1 ATGATAATGGTTAGGTAAATGTTCC
216095296 ATGATAATGGGTTAGGTAAATGTTCC
1 ATGATAAT-GGTTAGGTAAATGTTCC
216095322 ATGATAATGGTTAGGTAAATGTTCC
1 ATGATAATGGTTAGGTAAATGTTCC
216095347 ATGAT
1 ATGAT
216095352 GGGAATTTCA
Statistics
Matches: 76, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
23 9 0.12
24 14 0.18
25 44 0.58
26 9 0.12
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37
Consensus pattern (25 bp):
ATGATAATGGTTAGGTAAATGTTCC
Found at i:216095314 original size:49 final size:50
Alignment explanation
Indices: 216095248--216095351 Score: 185
Period size: 49 Copynumber: 2.1 Consensus size: 50
216095238 ATTGATACAA
216095248 ATGATAATGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAAT-TT-C
1 ATGATAATGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCC
216095296 ATGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCC
1 ATGATAAT-GGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCC
216095347 ATGAT
1 ATGAT
216095352 GGGAATTTCA
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
48 8 0.15
49 37 0.70
50 2 0.04
51 6 0.11
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37
Consensus pattern (50 bp):
ATGATAATGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCC
Found at i:216101958 original size:46 final size:46
Alignment explanation
Indices: 216101905--216102080 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
216101895 TATTTGGGCA
216101905 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
216101951 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
216101998 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
216102044 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
216102081 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:216102060 original size:93 final size:93
Alignment explanation
Indices: 216101901--216102072 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
216101891 GGGATATTTG
* *
216101901 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
216101966 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
216101994 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
216102059 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
216102073 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:216108708 original size:9 final size:10
Alignment explanation
Indices: 216108701--216108757 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
216108691 AAGAGAAAAT
216108701 AAAGAAAAGA
1 AAAGAAAAGA
216108711 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
216108723 AAAGAAGA-A
1 AAAGAAAAGA
216108732 AAAGAAAATGA
1 AAAGAAAA-GA
216108743 AATA-AAAAGA
1 AA-AGAAAAGA
216108753 AAAGA
1 AAAGA
216108758 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:216108725 original size:6 final size:5
Alignment explanation
Indices: 216108701--216108757 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
216108691 AAGAGAAAAT
*
216108701 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
216108748 AAAGA AAAGA
1 AAAGA AAAGA
216108758 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:216108732 original size:15 final size:14
Alignment explanation
Indices: 216108701--216108757 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
216108691 AAGAGAAAAT
216108701 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
216108717 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
216108732 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
216108748 AAAGAAAAGA
1 AAAGAAAAGA
216108758 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:216108834 original size:11 final size:12
Alignment explanation
Indices: 216108806--216108845 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
216108796 GAGAGAACTT
*
216108806 GAAAAAGCAAAA
1 GAAAAAGAAAAA
*
216108818 GCAAAAG-AAAA
1 GAAAAAGAAAAA
216108829 GAAAAAGAAAAA
1 GAAAAAGAAAAA
216108841 GAAAA
1 GAAAA
216108846 TGAGATTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.78, C:0.05, G:0.17, T:0.00
Consensus pattern (12 bp):
GAAAAAGAAAAA
Found at i:216108834 original size:17 final size:17
Alignment explanation
Indices: 216108808--216108845 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
216108798 GAGAACTTGA
* *
216108808 AAAAGCAAAAGCAAAAG
1 AAAAGAAAAAGAAAAAG
216108825 AAAAGAAAAAGAAAAAG
1 AAAAGAAAAAGAAAAAG
216108842 AAAA
1 AAAA
216108846 TGAGATTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.79, C:0.05, G:0.16, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAGAAAAAG
Found at i:216108868 original size:12 final size:12
Alignment explanation
Indices: 216108806--216108869 Score: 51
Period size: 12 Copynumber: 5.4 Consensus size: 12
216108796 GAGAGAACTT
216108806 GAAAAAGCA-AAA
1 GAAAAAG-AGAAA
*
216108818 GCAAAAGA-AAA
1 GAAAAAGAGAAA
*
216108829 GAAAAAGAAAAA
1 GAAAAAGAGAAA
* **
216108841 GAAAATGAGATT
1 GAAAAAGAGAAA
*
216108853 GAAAAAGAGAAC
1 GAAAAAGAGAAA
216108865 GAAAA
1 GAAAA
216108870 GAAATTTGAG
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
11 11 0.26
12 31 0.74
ACGTcount: A:0.70, C:0.05, G:0.20, T:0.05
Consensus pattern (12 bp):
GAAAAAGAGAAA
Found at i:216108869 original size:30 final size:30
Alignment explanation
Indices: 216108825--216108905 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
216108815 AAAGCAAAAG
*
216108825 AAAAGAAAAAGAAAAAGAAA-ATGAGATTGA
1 AAAAG-AAAAGAAAAAGAAATATGAGAGTGA
* *
216108855 AAAAGAGAACG-AAAAGAAATTTGAGAGTGA
1 AAAAGA-AAAGAAAAAGAAATATGAGAGTGA
*
216108885 AAAAGAAGATGAAAAAGAAAT
1 AAAAGAA-AAGAAAAAGAAAT
216108906 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
29 10 0.23
30 24 0.56
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.11
Consensus pattern (30 bp):
AAAAGAAAAGAAAAAGAAATATGAGAGTGA
Found at i:216108878 original size:24 final size:24
Alignment explanation
Indices: 216108804--216108898 Score: 70
Period size: 24 Copynumber: 4.0 Consensus size: 24
216108794 TTGAGAGAAC
*
216108804 TTGAAAAAGCAAAAGCAAAA-GAAA
1 TTGAAAAAGAAAAAG-AAAATGAAA
* *
216108828 -AGAAAAAGAAAAAGAAAATGAGA
1 TTGAAAAAGAAAAAGAAAATGAAA
* *
216108851 TTGAAAAAGAGAACGAAAA-GAAA
1 TTGAAAAAGAAAAAGAAAATGAAA
* ** *
216108874 TTTGAGAGTGAAAAAGAAGATGAAA
1 -TTGAAAAAGAAAAAGAAAATGAAA
216108899 AAGAAATTGA
Statistics
Matches: 54, Mismatches: 13, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
22 4 0.07
23 18 0.33
24 28 0.52
25 4 0.07
ACGTcount: A:0.64, C:0.03, G:0.22, T:0.11
Consensus pattern (24 bp):
TTGAAAAAGAAAAAGAAAATGAAA
Found at i:216111053 original size:30 final size:31
Alignment explanation
Indices: 216111019--216111115 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
216111009 AGCTCACTCC
*
216111019 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
216111049 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
216111079 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
216111109 TAGCTCA
1 TAGCTCA
216111116 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:216113637 original size:9 final size:10
Alignment explanation
Indices: 216113630--216113686 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
216113620 AAGAGAAAAT
216113630 AAAGAAAAGA
1 AAAGAAAAGA
216113640 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
216113652 AAAGAAGA-A
1 AAAGAAAAGA
216113661 AAAGAAAATGA
1 AAAGAAAA-GA
216113672 AATA-AAAAGA
1 AA-AGAAAAGA
216113682 AAAGA
1 AAAGA
216113687 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:216113654 original size:6 final size:5
Alignment explanation
Indices: 216113630--216113686 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
216113620 AAGAGAAAAT
*
216113630 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
216113677 AAAGA AAAGA
1 AAAGA AAAGA
216113687 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:216113661 original size:15 final size:14
Alignment explanation
Indices: 216113630--216113686 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
216113620 AAGAGAAAAT
216113630 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
216113646 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
216113661 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
216113677 AAAGAAAAGA
1 AAAGAAAAGA
216113687 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:216113749 original size:7 final size:6
Alignment explanation
Indices: 216113736--216113776 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
216113726 GAGAGAACTT
*
216113736 GAAAAA GCAAAAA GCAAAA GAAAAA G-AAAA GAAAAA GAAAA
1 GAAAAA G-AAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAA
216113777 TGAGATTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 5 0.16
6 20 0.65
7 6 0.19
ACGTcount: A:0.78, C:0.05, G:0.17, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:216113765 original size:11 final size:11
Alignment explanation
Indices: 216113738--216113776 Score: 60
Period size: 11 Copynumber: 3.4 Consensus size: 11
216113728 GAGAACTTGA
216113738 AAAAGCAAAAAG
1 AAAAG-AAAAAG
216113750 CAAAAGAAAAAG
1 -AAAAGAAAAAG
216113762 AAAAGAAAAAG
1 AAAAGAAAAAG
216113773 AAAA
1 AAAA
216113777 TGAGATTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 15 0.58
12 6 0.23
13 5 0.19
ACGTcount: A:0.79, C:0.05, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:216113800 original size:30 final size:30
Alignment explanation
Indices: 216113755--216113836 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 30
216113745 AAAAGCAAAA
*
216113755 GAAAAAGAAAAGAAAAAGAAA-ATGAGATT
1 GAAAAAGAAAAGAAAAAGAAATATGAGAGT
* *
216113784 GAAAAAGAGAACG-AAAAGAAATTTGAGAGT
1 GAAAAAGA-AAAGAAAAAGAAATATGAGAGT
*
216113814 GAAAAAGAAGATGAAAAAGAAAT
1 GAAAAAGAA-AAGAAAAAGAAAT
216113837 TGAAACAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
29 17 0.38
30 19 0.42
31 9 0.20
ACGTcount: A:0.65, C:0.01, G:0.23, T:0.11
Consensus pattern (30 bp):
GAAAAAGAAAAGAAAAAGAAATATGAGAGT
Found at i:216115975 original size:30 final size:31
Alignment explanation
Indices: 216115941--216116037 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
216115931 AGCTCACTCC
*
216115941 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
216115971 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
216116001 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
216116031 TAGCTCA
1 TAGCTCA
216116038 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:216117687 original size:30 final size:30
Alignment explanation
Indices: 216117643--216117738 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 30
216117633 AGCTCACTCC
*
216117643 TAGCTC-ATTTCAGCTCACGAGCTAAACCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * * * *
216117672 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
216117702 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
216117732 TAGCTCA
1 TAGCTCA
216117739 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 1
0.76 0.22 0.01
Matches are distributed among these distances:
29 6 0.12
30 45 0.88
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:216119455 original size:12 final size:12
Alignment explanation
Indices: 216119438--216119481 Score: 70
Period size: 12 Copynumber: 3.6 Consensus size: 12
216119428 TATACAAGTC
216119438 AAAAAAAATTCA
1 AAAAAAAATTCA
216119450 AAAAAAAATTCA
1 AAAAAAAATTCA
*
216119462 AAAAAAAATCTGA
1 AAAAAAAAT-TCA
216119475 AAAAAAA
1 AAAAAAA
216119482 GTGTTTAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 21 0.70
13 9 0.30
ACGTcount: A:0.77, C:0.07, G:0.02, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:216119477 original size:23 final size:23
Alignment explanation
Indices: 216119436--216119481 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
216119426 GTTATACAAG
*
216119436 TCAAAAAAAATTCAAAAAAAAAT
1 TCAAAAAAAAATCAAAAAAAAAT
*
216119459 TCAAAAAAAAATCTGAAAAAAAA
1 TCAAAAAAAAATC-AAAAAAAAA
216119482 GTGTTTAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.74, C:0.09, G:0.02, T:0.15
Consensus pattern (23 bp):
TCAAAAAAAAATCAAAAAAAAAT
Found at i:216120394 original size:9 final size:9
Alignment explanation
Indices: 216120380--216120444 Score: 58
Period size: 9 Copynumber: 6.7 Consensus size: 9
216120370 TCTTGTAAAG
*
216120380 AGAAAACAA
1 AGAAAAAAA
216120389 AGAAAAGAAA
1 AGAAAA-AAA
216120399 AGAAAAAAA
1 AGAAAAAAA
* *
216120408 AGCAAAAGA
1 AGAAAAAAA
216120417 AGAAAAAGAAA
1 AG-AAAA-AAA
216120428 ATGAAATAAAA
1 A-GAAA-AAAA
216120439 AGAAAA
1 AGAAAA
216120445 GAGAGGCAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
9 19 0.41
10 15 0.33
11 10 0.22
12 2 0.04
ACGTcount: A:0.78, C:0.03, G:0.15, T:0.03
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:216120397 original size:5 final size:5
Alignment explanation
Indices: 216120387--216120446 Score: 63
Period size: 5 Copynumber: 12.0 Consensus size: 5
216120377 AAGAGAAAAC
*
216120387 AAAGA AAAGA AAAGA AAA-A AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAGA AAAGA AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
216120437 AAAGA AAAGA
1 AAAGA AAAGA
216120447 GAGGCAAGAG
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
4 8 0.17
5 29 0.62
6 9 0.19
7 1 0.02
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.03
Consensus pattern (5 bp):
AAAGA
Found at i:216120416 original size:15 final size:14
Alignment explanation
Indices: 216120380--216120446 Score: 80
Period size: 14 Copynumber: 4.6 Consensus size: 14
216120370 TCTTGTAAAG
* *
216120380 AGAAAACAAAGAAA
1 AGAAAAGAAAAAAA
216120394 AGAAAAGAAAAAAA
1 AGAAAAGAAAAAAA
*
216120408 AGCAAAAGAAGAAAA
1 AG-AAAAGAAAAAAA
216120423 AGAAAATGAAATAAAA
1 AGAAAA-GAAA-AAAA
216120439 AGAAAAGA
1 AGAAAAGA
216120447 GAGGCAAGAG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
14 18 0.39
15 18 0.39
16 10 0.22
ACGTcount: A:0.78, C:0.03, G:0.16, T:0.03
Consensus pattern (14 bp):
AGAAAAGAAAAAAA
Found at i:216120523 original size:12 final size:12
Alignment explanation
Indices: 216120515--216120539 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
216120505 TTTGAAAAGC
216120515 AAAAAGAAAATG
1 AAAAAGAAAATG
216120527 AAAAAGAAAATG
1 AAAAAGAAAATG
216120539 A
1 A
216120540 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:216120536 original size:18 final size:18
Alignment explanation
Indices: 216120509--216120564 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
216120499 AAAGCCTTTG
216120509 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
216120528 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
216120546 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
216120563 AA
1 AA
216120565 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:216120549 original size:30 final size:31
Alignment explanation
Indices: 216120515--216120596 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
216120505 TTTGAAAAGC
*
216120515 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
216120545 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
216120575 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
216120597 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:216122797 original size:30 final size:30
Alignment explanation
Indices: 216122703--216122798 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
216122693 AGCTCACTCC
* * *
216122703 TAGCTC-ATTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTCAGCTCACGAGCTAAAGCT
* * **
216122732 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAAG-CT
* *
216122762 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAAGCT
216122792 TAGCTCA
1 TAGCTCA
216122799 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 14, Indels: 5
0.72 0.20 0.07
Matches are distributed among these distances:
29 8 0.16
30 39 0.78
31 3 0.06
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAAGCT
Found at i:216137053 original size:23 final size:23
Alignment explanation
Indices: 216137027--216137073 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
216137017 CATTCTTTTG
216137027 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACTATGC
* * *
216137050 TCATTCTCATGCTATTACTATGC
1 TCATACCCATGCCATTACTATGC
216137073 T
1 T
216137074 AATGTCATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.09, T:0.38
Consensus pattern (23 bp):
TCATACCCATGCCATTACTATGC
Found at i:216138655 original size:20 final size:20
Alignment explanation
Indices: 216138630--216138670 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
216138620 TATAGATATA
216138630 TGCATTTTAGAAAGAAAATT
1 TGCATTTTAGAAAGAAAATT
216138650 TGCATTTTAGAAAGAAAATT
1 TGCATTTTAGAAAGAAAATT
216138670 T
1 T
216138671 TGTGTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.37
Consensus pattern (20 bp):
TGCATTTTAGAAAGAAAATT
Found at i:216140185 original size:39 final size:39
Alignment explanation
Indices: 216140138--216140269 Score: 201
Period size: 39 Copynumber: 3.4 Consensus size: 39
216140128 TATATAAGAT
*
216140138 TGGAAATATATCCAGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* *
216140177 TGGAAATATATTCGGACATGAGGTCCGCAGGCTATATCC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* **
216140216 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
216140255 TGGAAAAATATCCGG
1 TGGAAATATATCCGG
216140270 GTTAAAGACC
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:216140283 original size:78 final size:78
Alignment explanation
Indices: 216140138--216140287 Score: 185
Period size: 78 Copynumber: 1.9 Consensus size: 78
216140128 TATATAAGAT
* * * * **
216140138 TGGAAATATATCCAGACATGAGGTCCGCAGGCTATATGCTGGAAATATATTCGGACATGAGGTCC
1 TGGAAATATATCCAGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCC
216140203 GCAGGCTATATCC
66 GCAGGCTATATCC
* * * **
216140216 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAGACC
1 TGGAAATATATCCAGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAGACC
216140280 CGCAGGCT
65 CGCAGGCT
216140288 TACGCTAGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
77 1 0.02
78 59 0.98
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (78 bp):
TGGAAATATATCCAGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCC
GCAGGCTATATCC
Found at i:216142494 original size:80 final size:80
Alignment explanation
Indices: 216142410--216142558 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
216142400 TATGGTAACC
* * * *
216142410 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
216142474 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
216142490 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
216142555 CCGG
66 CCGG
216142559 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:216142500 original size:40 final size:38
Alignment explanation
Indices: 216142451--216142558 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
216142441 ATCACGATTT
*
216142451 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
216142491 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
216142531 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
216142559 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:216150528 original size:80 final size:80
Alignment explanation
Indices: 216150444--216150592 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
216150434 TATGGTAACC
* * * *
216150444 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
216150508 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
216150524 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
216150589 CCGG
66 CCGG
216150593 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:216150534 original size:40 final size:38
Alignment explanation
Indices: 216150485--216150592 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
216150475 ATCACGATTT
*
216150485 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
216150525 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
216150565 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
216150593 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:216154801 original size:40 final size:40
Alignment explanation
Indices: 216154756--216154922 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
216154746 CGGAATATAA
216154756 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
216154796 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
216154836 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
216154876 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
216154915 CCGGATAT
1 CCGGATAT
216154923 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:216154906 original size:80 final size:79
Alignment explanation
Indices: 216154772--216154922 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
216154762 ATAATCACGT
*
216154772 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
216154837 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
216154852 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
216154915 CCGGATAT
64 CCGGATAT
216154923 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:216162810 original size:40 final size:40
Alignment explanation
Indices: 216162765--216162931 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
216162755 CGGAATATAA
216162765 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
216162805 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
216162845 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
216162885 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
216162924 CCGGATAT
1 CCGGATAT
216162932 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:216162915 original size:80 final size:79
Alignment explanation
Indices: 216162781--216162931 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
216162771 ATAATCACGT
*
216162781 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
216162846 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
216162861 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
216162924 CCGGATAT
64 CCGGATAT
216162932 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:216163778 original size:17 final size:19
Alignment explanation
Indices: 216163755--216163800 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
216163745 AAGAAGCATG
216163755 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
216163773 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
216163791 AATCATGCTC
1 AATCATGCTC
216163801 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:216167982 original size:30 final size:30
Alignment explanation
Indices: 216167927--216168057 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
216167917 ATAGTGAATC
*
216167927 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
216167956 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
216167986 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
216168014 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
216168044 CGCACACTTAGTGC
1 CGCACACTTAGTGC
216168058 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:216168037 original size:58 final size:58
Alignment explanation
Indices: 216167926--216168057 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
216167916 TATAGTGAAT
* * * * *
216167926 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
216167985 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
216168043 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
216168058 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:216171589 original size:30 final size:29
Alignment explanation
Indices: 216171528--216171630 Score: 179
Period size: 29 Copynumber: 3.5 Consensus size: 29
216171518 AAAATTGTAC
* *
216171528 AGCACTAAGTGTGCGAACTGAAAACATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
216171557 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
216171587 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
216171616 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
216171631 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 43 0.61
30 28 0.39
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:216171594 original size:59 final size:60
Alignment explanation
Indices: 216171498--216171630 Score: 196
Period size: 59 Copynumber: 2.2 Consensus size: 60
216171488 GACAAGATTG
* * *
216171498 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAACATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
* * * *
216171558 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
216171617 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
216171631 GATTCACTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 51 0.77
60 15 0.23
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
Found at i:216178643 original size:30 final size:29
Alignment explanation
Indices: 216178582--216178684 Score: 179
Period size: 29 Copynumber: 3.5 Consensus size: 29
216178572 AAAATTGTAC
* *
216178582 AGCACTAAGTGTGCGAACTGAAAACATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
216178611 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
216178641 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
216178670 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
216178685 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 43 0.61
30 28 0.39
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:216178648 original size:59 final size:60
Alignment explanation
Indices: 216178552--216178684 Score: 196
Period size: 59 Copynumber: 2.2 Consensus size: 60
216178542 GACAAGATTG
* * *
216178552 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAACATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
* * * *
216178612 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
216178671 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
216178685 GATTCACTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 51 0.77
60 15 0.23
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
Found at i:216181248 original size:27 final size:27
Alignment explanation
Indices: 216181193--216181286 Score: 145
Period size: 27 Copynumber: 3.5 Consensus size: 27
216181183 GAGGAAGCGT
*
216181193 TCTGGTGGCTATGCCAC-AATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
216181219 TCTGGTGGCTCTGCTACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
216181246 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
216181273 TCTGGTGGCTCTGC
1 TCTGGTGGCTCTGC
216181287 ACGATTATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
26 15 0.24
27 47 0.76
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:216181303 original size:27 final size:27
Alignment explanation
Indices: 216181193--216181329 Score: 142
Period size: 27 Copynumber: 5.2 Consensus size: 27
216181183 GAGGAAGCGT
* *
216181193 TCTGGTGGCTATGCCACAATATCTG-A
1 TCTGGTGGCTCTGCCACATTATCTGTA
* *
216181219 TCTGGTGGCTCTGCTACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-ATTATCTGTA
216181246 TCTGGTGGCTCTGCCACATATATCTGT-
1 TCTGGTGGCTCTGCCACAT-TATCTGTA
*
216181273 TCTGGTGGCTCTG-CACGATTATTTGTA
1 TCTGGTGGCTCTGCCAC-ATTATCTGTA
* *
216181300 TCT-GTGACTCTGTCACATTATCTGT-
1 TCTGGTGGCTCTGCCACATTATCTGTA
216181325 TCTGG
1 TCTGG
216181330 CAGCCATGCT
Statistics
Matches: 97, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
25 3 0.03
26 42 0.43
27 52 0.54
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACATTATCTGTA
Found at i:216184480 original size:27 final size:26
Alignment explanation
Indices: 216184443--216184557 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
216184433 AGCATGGCTG
* *
216184443 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
216184469 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
216184497 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
216184524 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
216184551 CCAGAAC
1 CCAGAAC
216184558 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:216184502 original size:54 final size:54
Alignment explanation
Indices: 216184443--216184557 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
216184433 AGCATGGCTG
*
216184443 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
216184497 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
216184551 CCAGAAC
1 CCAGAAC
216184558 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:216186182 original size:26 final size:26
Alignment explanation
Indices: 216186153--216186236 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
216186143 CATGGAATTC
* *
216186153 TTATCATTAAACATTTACCTAACCCA
1 TTATCATTGAACATTTACCTAACCTA
*
216186179 TTATCATGGAACATTTACCTAACCTA
1 TTATCATTGAACATTTACCTAACCTA
216186205 TTATCATTGAACATTTACCTAACCTA
1 TTATCATTGAACATTTACCTAACCTA
216186231 TTATCA
1 TTATCA
216186237 ATTTATATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.37
Consensus pattern (26 bp):
TTATCATTGAACATTTACCTAACCTA
Found at i:216192448 original size:50 final size:51
Alignment explanation
Indices: 216192371--216192477 Score: 173
Period size: 50 Copynumber: 2.1 Consensus size: 51
216192361 TGATACAAAT
216192371 TGATAATAGGTTAGTAAATGTTCCATGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
* *
216192420 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTA-GTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
216192472 TGATAA
1 TGATAA
216192478 GAATTTCATG
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
49 12 0.23
50 18 0.34
51 13 0.25
52 10 0.19
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (51 bp):
TGATAATAGGTTAGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
Found at i:216192452 original size:26 final size:26
Alignment explanation
Indices: 216192371--216192477 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
216192361 TGATACAAAT
* *
216192371 TGATAATAGGTTA-GTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
216192396 TGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
216192420 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
216192446 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
216192472 TGATAA
1 TGATAA
216192478 GAATTTCATG
Statistics
Matches: 78, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
24 15 0.19
25 27 0.35
26 36 0.46
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:216193980 original size:26 final size:27
Alignment explanation
Indices: 216193921--216193983 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
216193911 AATTACTATA
* *
216193921 ATACCCCTATGTATGAAAATTACTGTT
1 ATACCCCTAGGTATGAAAATTACCGTT
*
216193948 ATA-CCCTAGGTGT-AAAATTACCGTT
1 ATACCCCTAGGTATGAAAATTACCGTT
216193973 ATACCCCTAGG
1 ATACCCCTAGG
216193984 GTTAATTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 14 0.44
26 15 0.47
27 3 0.09
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (27 bp):
ATACCCCTAGGTATGAAAATTACCGTT
Found at i:216194127 original size:27 final size:27
Alignment explanation
Indices: 216194086--216194225 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
216194076 GAGGAAGCGT
*
216194086 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
216194113 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
216194140 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
216194167 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
216194195 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
216194221 TCTGG
1 TCTGG
216194226 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
26 5 0.05
27 82 0.80
28 15 0.15
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:216194171 original size:54 final size:55
Alignment explanation
Indices: 216194086--216194225 Score: 203
Period size: 54 Copynumber: 2.6 Consensus size: 55
216194076 GAGGAAGCGT
* * *
216194086 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
216194140 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
216194195 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
216194226 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 60 0.77
55 18 0.23
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:216197381 original size:27 final size:26
Alignment explanation
Indices: 216197333--216197446 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
216197323 AGCATGGCTG
* *
216197333 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
216197359 CCAGATACAGA-AATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
216197386 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
216197413 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
216197440 CCAGAAC
1 CCAGAAC
216197447 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
26 13 0.17
27 63 0.81
28 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:216197395 original size:53 final size:54
Alignment explanation
Indices: 216197333--216197446 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
216197323 AGCATGGCTG
*
216197333 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGA-AATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
216197386 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
216197440 CCAGAAC
1 CCAGAAC
216197447 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
53 16 0.30
54 38 0.70
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Done.