Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 687 of 770
Found at i:216475191 original size:30 final size:30
Alignment explanation
Indices: 216475113--216475200 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
216475103 CATAGTATCG
* * * *
216475113 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
216475143 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
216475173 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
216475201 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:216482928 original size:25 final size:25
Alignment explanation
Indices: 216482904--216482950 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
216482894 ATGTGGAATA
*
216482904 ATGTATAGAATACA-ATATTAAAAT
1 ATGTACAGAATACACATATTAAAAT
* *
216482928 ATTTACATAATACACATATTAAA
1 ATGTACAGAATACACATATTAAA
216482951 TAACTAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.34
Consensus pattern (25 bp):
ATGTACAGAATACACATATTAAAAT
Found at i:216483728 original size:24 final size:24
Alignment explanation
Indices: 216483682--216483728 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
216483672 AAGGTAATTT
* * *
216483682 TTTTATTTTTTTCTCTTTTTTTGC
1 TTTTATTTCTTTATCTTTATTTGC
*
216483706 TTTTATTTCTTTATGTTTATTTG
1 TTTTATTTCTTTATCTTTATTTG
216483729 TAAATGTTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.77
Consensus pattern (24 bp):
TTTTATTTCTTTATCTTTATTTGC
Found at i:216486506 original size:46 final size:46
Alignment explanation
Indices: 216486456--216486631 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
216486446 TATTTGGGCA
216486456 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
216486502 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
216486549 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
216486595 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
216486632 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:216486611 original size:93 final size:93
Alignment explanation
Indices: 216486452--216486623 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
216486442 TGGATATTTG
* *
216486452 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
216486517 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
216486545 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
216486610 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
216486624 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:216489593 original size:15 final size:15
Alignment explanation
Indices: 216489573--216489641 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
216489563 GTATCTTGGG
216489573 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
216489588 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
216489603 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
216489618 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
216489633 TTTCTTTAT
1 TTTCTTTAT
216489642 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:216489642 original size:30 final size:30
Alignment explanation
Indices: 216489564--216489651 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
216489554 CATAGTATCG
* * * *
216489564 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
216489594 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
216489624 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
216489652 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:216492083 original size:46 final size:46
Alignment explanation
Indices: 216492030--216492205 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
216492020 TATTTGGGCA
216492030 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
216492076 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
216492123 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
216492169 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
216492206 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:216492185 original size:93 final size:93
Alignment explanation
Indices: 216492026--216492197 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
216492016 GGGATATTTG
* *
216492026 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
216492091 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
216492119 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
216492184 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
216492198 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:216494996 original size:28 final size:28
Alignment explanation
Indices: 216494931--216495029 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
216494921 CATGAGATTG
* * *
216494931 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
216494960 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
216494988 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
216495016 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
216495030 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:216498059 original size:40 final size:40
Alignment explanation
Indices: 216497993--216498159 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
216497983 AAATTGAATG
* * *
216497993 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
216498032 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
216498072 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
216498112 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
216498152 ATATCCGG
1 ATATCCGG
216498160 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:216506047 original size:40 final size:40
Alignment explanation
Indices: 216505981--216506147 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
216505971 AAATTGAATG
* * *
216505981 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
216506020 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
216506060 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
216506100 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
216506140 ATATCCGG
1 ATATCCGG
216506148 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:216515268 original size:32 final size:32
Alignment explanation
Indices: 216515227--216515289 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
216515217 TACAGTGAGG
216515227 ATCGACTTCTGATGTTGAATTTCAGATTGGAA
1 ATCGACTTCTGATGTTGAATTTCAGATTGGAA
*
216515259 ATCGACTTCTGATGTTGAATTTTAGATTGGA
1 ATCGACTTCTGATGTTGAATTTCAGATTGGA
216515290 TCTAATTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (32 bp):
ATCGACTTCTGATGTTGAATTTCAGATTGGAA
Found at i:216518126 original size:31 final size:31
Alignment explanation
Indices: 216518083--216518146 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
216518073 CCTTTTCATA
216518083 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
216518114 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
216518145 TT
1 TT
216518147 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:216518403 original size:24 final size:24
Alignment explanation
Indices: 216518339--216518501 Score: 257
Period size: 23 Copynumber: 7.0 Consensus size: 24
216518329 GCTTTATCAT
*
216518339 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
216518364 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
216518387 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
216518410 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
216518434 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
216518458 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
216518480 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
216518502 GCACTTCCTC
Statistics
Matches: 133, Mismatches: 1, Indels: 10
0.92 0.01 0.07
Matches are distributed among these distances:
22 22 0.17
23 56 0.42
24 47 0.35
25 8 0.06
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:216518438 original size:47 final size:47
Alignment explanation
Indices: 216518360--216518500 Score: 245
Period size: 47 Copynumber: 3.1 Consensus size: 47
216518350 CCTAGCCTCT
216518360 TTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
216518406 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
216518453 TTTTAATAACT-GGGCATAAGCCC-TTTAATAACT-GGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
216518498 TTT
1 TTT
216518501 TGCACTTCCT
Statistics
Matches: 93, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
44 3 0.03
45 12 0.13
46 26 0.28
47 42 0.45
48 10 0.11
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:216518572 original size:9 final size:9
Alignment explanation
Indices: 216518558--216518614 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
216518548 ATCTCGTGTG
216518558 CATATCATA
1 CATATCATA
*
216518567 CATATCATGTG
1 CATATCA--TA
216518578 CATATCATA
1 CATATCATA
* *
216518587 CATGTCATGTG
1 CATATCA--TA
216518598 CATATCATA
1 CATATCATA
216518607 CATATCAT
1 CATATCAT
216518615 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:216518577 original size:20 final size:20
Alignment explanation
Indices: 216518554--216518616 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
216518544 GAACATCTCG
216518554 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
216518574 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
216518594 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
216518614 TGT
1 TGT
216518617 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:216518681 original size:25 final size:25
Alignment explanation
Indices: 216518653--216518700 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
216518643 ATATATAAAC
* * *
216518653 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
216518678 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
216518701 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:216524961 original size:20 final size:20
Alignment explanation
Indices: 216524936--216525015 Score: 124
Period size: 20 Copynumber: 4.0 Consensus size: 20
216524926 GCACCCTTCC
216524936 GCATATCATACATATCATGT
1 GCATATCATACATATCATGT
*
216524956 GCATATCATACATGTCATGT
1 GCATATCATACATATCATGT
* *
216524976 GCATATCATACATGTCTTGT
1 GCATATCATACATATCATGT
*
216524996 GCATATCATTCATATCATGT
1 GCATATCATACATATCATGT
216525016 TTATCAAAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (20 bp):
GCATATCATACATATCATGT
Found at i:216531908 original size:37 final size:37
Alignment explanation
Indices: 216531849--216531994 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
216531839 AGCTCAGACG
* *
216531849 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
**
216531886 AAATCTCCACACGTAGTCATCGGGTCTTACCCATACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
216531923 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
216531960 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
216531995 ATATATTTCC
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:216532195 original size:48 final size:48
Alignment explanation
Indices: 216532141--216532275 Score: 216
Period size: 48 Copynumber: 2.8 Consensus size: 48
216532131 GCACATCGCC
216532141 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
* *
216532189 TACATATTTCGCACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
* * * *
216532237 TACATATTTCATATTAGCCATTCGGCCTTATCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
216532276 TGCATGTTCA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 80 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATACCTCA
Found at i:216532310 original size:47 final size:47
Alignment explanation
Indices: 216532253--216532438 Score: 300
Period size: 47 Copynumber: 4.0 Consensus size: 47
216532243 TTTCATATTA
* * * *
216532253 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCATCATATTG
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
*
216532300 GCCATTCGGCCTTATCACACATATGCATACTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
216532347 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
* * *
216532394 GCCATTCGGCCTTATCATATATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACAT
216532439 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
Found at i:216537025 original size:40 final size:41
Alignment explanation
Indices: 216536917--216537135 Score: 222
Period size: 40 Copynumber: 5.5 Consensus size: 41
216536907 CTCAAGTAAT
* * * * *
216536917 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGC
* * *
216536955 CTTCGGGTCTTAG-CCGGATATGGTC-ACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGC
*
216536994 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGC
* * *
216537034 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGC
* * * *
216537074 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAACTAGCACAAATGC
216537115 CTTC-GGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
216537136 CATTCGAATA
Statistics
Matches: 151, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
38 26 0.17
39 19 0.13
40 87 0.58
41 19 0.13
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (41 bp):
CTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGC
Found at i:216546891 original size:29 final size:29
Alignment explanation
Indices: 216546859--216546936 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
216546849 ATACCCTCCG
** *
216546859 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
216546888 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
216546917 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
216546937 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:216547891 original size:37 final size:37
Alignment explanation
Indices: 216547838--216547940 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
216547828 CGAATAGTCC
*
216547838 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
216547875 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
216547912 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
216547941 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:216548139 original size:48 final size:48
Alignment explanation
Indices: 216548081--216548279 Score: 371
Period size: 48 Copynumber: 4.1 Consensus size: 48
216548071 ATATACACAC
* *
216548081 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
216548129 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
*
216548177 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
216548225 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
216548273 ATCTCAT
1 ATCTCAT
216548280 TACCACATAT
Statistics
Matches: 147, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 147 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
Found at i:216548282 original size:21 final size:21
Alignment explanation
Indices: 216548258--216548300 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
216548248 CCATTCGGCT
216548258 TTACCACATATACATATCTCA
1 TTACCACATATACATATCTCA
216548279 TTACCACATATACATATCTCA
1 TTACCACATATACATATCTCA
216548300 T
1 T
216548301 ACATATTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.28, G:0.00, T:0.35
Consensus pattern (21 bp):
TTACCACATATACATATCTCA
Found at i:216548290 original size:69 final size:69
Alignment explanation
Indices: 216548210--216548348 Score: 278
Period size: 69 Copynumber: 2.0 Consensus size: 69
216548200 CCATTCGGCT
216548210 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
1 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
216548275 CTCA
66 CTCA
216548279 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
1 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
216548344 CTCA
66 CTCA
216548348 T
1 T
216548349 ACATATTTCA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (69 bp):
TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
CTCA
Found at i:216548334 original size:48 final size:48
Alignment explanation
Indices: 216548279--216548430 Score: 295
Period size: 48 Copynumber: 3.2 Consensus size: 48
216548269 ACATATCTCA
*
216548279 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
216548327 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
216548375 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
1 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
216548423 TTACCACA
1 TTACCACA
216548431 CACATATATA
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 103 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
Found at i:216548368 original size:117 final size:117
Alignment explanation
Indices: 216548162--216548396 Score: 452
Period size: 117 Copynumber: 2.0 Consensus size: 117
216548152 CCATTCGGCT
*
216548162 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
216548227 CTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCA
66 CTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCA
216548279 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
1 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
*
216548344 CTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
66 CTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCA
216548396 T
1 T
216548397 ACATATTTCA
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
117 116 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (117 bp):
TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
CTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:216548386 original size:165 final size:165
Alignment explanation
Indices: 216548114--216548430 Score: 625
Period size: 165 Copynumber: 1.9 Consensus size: 165
216548104 CCATTCGGCT
216548114 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
1 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
216548179 CTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
66 CTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
216548244 GTAGCCATTCGGCTTTACCACATATACATATCTCA
131 GTAGCCATTCGGCTTTACCACATATACATATCTCA
216548279 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
1 TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
216548344 CTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
66 CTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
*
216548409 TTAGCCATTCGGCTTTACCACA
131 GTAGCCATTCGGCTTTACCACA
216548431 CACATATATA
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
165 151 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (165 bp):
TTACCACATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATAT
CTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
GTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:216551712 original size:28 final size:28
Alignment explanation
Indices: 216551681--216551837 Score: 131
Period size: 28 Copynumber: 5.5 Consensus size: 28
216551671 TTGACTAATT
*
216551681 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
216551709 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
* *
216551738 TCGTACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
** *
216551766 TCGCACACATAGTGCCTC-AGTTACTGATC
1 TCGCACACATAGTG-CTCGA-TTAAAGAAC
* *
216551795 TGGCACACATAGTGCTC-AGTTGAAGAAC
1 TCGCACACATAGTGCTCGA-TTAAAGAAC
* *
216551823 TTGCACACACAGTGC
1 TCGCACACATAGTGC
216551838 CTCATAACTC
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
27 1 0.01
28 58 0.56
29 43 0.42
30 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:216551745 original size:29 final size:29
Alignment explanation
Indices: 216551708--216551809 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
216551698 GATTAAAGAA
216551708 CTCGCACACATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* * **
216551737 CTCGTACACATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* **
216551765 CTCGCACACATAGTGCCTCAGTTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
216551794 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
216551810 TCAGTTGAAG
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 22 0.37
29 37 0.63
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:216551755 original size:57 final size:57
Alignment explanation
Indices: 216551681--216551841 Score: 225
Period size: 57 Copynumber: 2.8 Consensus size: 57
216551671 TTGACTAATT
* *
216551681 TCGCACACATAGCGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAATTACCAATC
* * **
216551738 TCGTACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAGTTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAATTACCAATC
* * *
216551795 TGGCACACATAGTGCTC-AGTTGAAGAACTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGA-TTGAAGAACTCGCACACATAGTGCCTCA
216551842 TAACTCCAGC
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
56 1 0.01
57 92 0.99
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAATTACCAATC
Found at i:216552439 original size:40 final size:40
Alignment explanation
Indices: 216551869--216552437 Score: 807
Period size: 40 Copynumber: 14.2 Consensus size: 40
216551859 CCTTTGAGGT
* *
216551869 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGAAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* * *
216551909 TTAGCCCGGATACATTACTAGCATGAATGCTCTTCGAAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
216551949 TTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
216551989 TTAGCCCGGATACATCACTAGTACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
216552029 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
216552069 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* * * *
216552109 TTAGCTCGGATACATCTCTAGCATGAATGCTCTTTGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
216552149 TTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
216552189 TTAGCCTGGATACATCACTAGCACGAATGTTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* *
216552229 TTAGCCTGGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* * * * *
216552269 TTAGCCCAGATATAACACCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* * *
216552309 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACT-AGCACGAATGCTCTTCGGAAC
* * * *
216552349 TTACCCCGGATATAACACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* * * * * * *
216552389 TTAGCCCGGCTATAACCCCAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
216552429 TTAGCCCGG
1 TTAGCCCGG
216552438 CTGTATAACT
Statistics
Matches: 494, Mismatches: 33, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
40 493 1.00
41 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
Found at i:216553779 original size:37 final size:37
Alignment explanation
Indices: 216553726--216553828 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
216553716 CGAATAGTCC
*
216553726 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
216553763 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
216553800 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
216553829 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:216554027 original size:48 final size:48
Alignment explanation
Indices: 216553969--216554153 Score: 316
Period size: 48 Copynumber: 3.9 Consensus size: 48
216553959 ATATACACAC
* *
216553969 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
216554017 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
* *
216554065 ATCTCATACATATTTCACAGTAGCCATTCAGCTTTACCACATATTCAT
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
* *
216554113 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACA
1 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACA
216554154 CACATATATA
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 130 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
Found at i:216555929 original size:15 final size:15
Alignment explanation
Indices: 216555909--216555965 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
216555899 CGATGAATTT
216555909 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
216555924 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
* *
216555939 ACTGAATTTATATCG
1 ATTGAATTTATATTG
216555954 ATTGAA-TTATAT
1 ATTGAATTTATAT
216555966 AATATACATG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
14 6 0.17
15 29 0.83
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.49
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:216556384 original size:21 final size:21
Alignment explanation
Indices: 216556349--216556444 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
216556339 AGGCACTTTA
216556349 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
216556372 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
216556393 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
216556414 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
216556435 TGTGTCGTAT
1 TGTGTCGTAT
216556445 ACTGATCAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
21 58 0.87
23 9 0.13
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:216556419 original size:42 final size:42
Alignment explanation
Indices: 216556336--216556444 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 42
216556326 GGCTTTATCG
* *
216556336 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTA--TCAGGCACCTCGTGTGTCGT
*
216556380 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
* * * *
216556422 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
216556445 ACTGATCAGG
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 38 0.67
44 19 0.33
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.36
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGT
Found at i:216562325 original size:15 final size:15
Alignment explanation
Indices: 216562305--216562361 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
216562295 CGATGAATTT
216562305 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
216562320 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
216562335 ATTGAATTTATATTG
1 ATTGAATTTATATTG
216562350 ATTGAA-TTATAT
1 ATTGAATTTATAT
216562362 AATATACATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:216562473 original size:22 final size:21
Alignment explanation
Indices: 216562443--216562485 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
216562433 ATGAGGAAAT
216562443 TGATATGAATATATGAGATTG
1 TGATATGAATATATGAGATTG
* *
216562464 TGATATTGAATATTTGATATTG
1 TGATA-TGAATATATGAGATTG
216562486 AAAAGTGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (21 bp):
TGATATGAATATATGAGATTG
Found at i:216562776 original size:21 final size:21
Alignment explanation
Indices: 216562750--216562813 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
216562740 GTGTCATATT
216562750 TCAGGCACCTCATGTGTCGTA
1 TCAGGCACCTCATGTGTCGTA
* * *
216562771 TCAGGCACCTCGTGTGTCATT
1 TCAGGCACCTCATGTGTCGTA
* * *
216562792 TTAGGCACTTTATGTGTCGTA
1 TCAGGCACCTCATGTGTCGTA
216562813 T
1 T
216562814 ACTGATCAGG
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (21 bp):
TCAGGCACCTCATGTGTCGTA
Found at i:216565617 original size:15 final size:15
Alignment explanation
Indices: 216565599--216565665 Score: 71
Period size: 15 Copynumber: 4.5 Consensus size: 15
216565589 ATCTTGGGTT
216565599 TCTTTATCCTGGATC
1 TCTTTATCCTGGATC
*
216565614 TCTTTATTCTGGATC
1 TCTTTATCCTGGATC
* * *
216565629 TCTTTATTCTGGGTT
1 TCTTTATCCTGGATC
* * *
216565644 TCTCTATCTTGGATT
1 TCTTTATCCTGGATC
216565659 TCTTTAT
1 TCTTTAT
216565666 TCGGTTTTCT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 44 1.00
ACGTcount: A:0.12, C:0.19, G:0.13, T:0.55
Consensus pattern (15 bp):
TCTTTATCCTGGATC
Found at i:216565657 original size:30 final size:30
Alignment explanation
Indices: 216565588--216565675 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
216565578 CATAGTATCG
* * * *
216565588 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
216565618 TAT-TCTGGATCTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
216565648 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
216565676 TGTTATCTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 8 0.17
30 39 0.81
31 1 0.02
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:216575806 original size:40 final size:40
Alignment explanation
Indices: 216575761--216575928 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
216575751 CGGAATACAA
*
216575761 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
216575801 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
216575841 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
216575881 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
216575921 CCGGATAT
1 CCGGATAT
216575929 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:216575901 original size:80 final size:80
Alignment explanation
Indices: 216575761--216575928 Score: 232
Period size: 80 Copynumber: 2.1 Consensus size: 80
216575751 CGGAATACAA
* * *
216575761 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
216575826 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
216575841 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
216575904 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
216575921 CCGGATAT
1 CCGGATAT
216575929 CATTCAATTG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 75 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:216583928 original size:42 final size:42
Alignment explanation
Indices: 216583852--216583933 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
216583842 GATACAGGGG
* *
216583852 ACACACGGCCTAATCACACGCCCATGTTCCAGACCATGTGTC
1 ACACACGGCCTAAACACACGCCCATGTGCCAGACCATGTGTC
* * * *
216583894 ACACACGGTCTAAACACACGCCCGTGTGCTAGACCGTGTG
1 ACACACGGCCTAAACACACGCCCATGTGCCAGACCATGTG
216583934 GTTGATTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.26, C:0.35, G:0.21, T:0.18
Consensus pattern (42 bp):
ACACACGGCCTAAACACACGCCCATGTGCCAGACCATGTGTC
Found at i:216593131 original size:40 final size:40
Alignment explanation
Indices: 216593002--216593145 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
216592992 GTGCAAATTG
*
216593002 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
216593041 TGATATCCGGGATAA-ACTCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGTC-CCGAAGGCAATTGTGCGAGTTA
* * *
216593081 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* * *
216593121 TCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAGTCCCGAAGG
216593146 TGTTTGAACA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 15 0.17
40 74 0.82
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:216597017 original size:28 final size:28
Alignment explanation
Indices: 216596971--216597039 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
216596961 TTTAAAACCC
*
216596971 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
216596998 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
216597026 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
216597040 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:216598665 original size:20 final size:20
Alignment explanation
Indices: 216598642--216598679 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
216598632 CACATCCAAA
*
216598642 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
216598662 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
216598680 GCTAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:216604990 original size:28 final size:28
Alignment explanation
Indices: 216604944--216605012 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
216604934 TTTAAAACCC
*
216604944 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
216604971 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
216604999 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
216605013 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:216606653 original size:20 final size:20
Alignment explanation
Indices: 216606630--216606667 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
216606620 CACATCCAAA
*
216606630 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
216606650 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
216606668 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:216607923 original size:23 final size:23
Alignment explanation
Indices: 216607894--216607940 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
216607884 AGAGCAAAGT
216607894 TTTATTTTTAACTCAACTTTATG
1 TTTATTTTTAACTCAACTTTATG
*
216607917 TTTATTTTTAACTTAACTTTATG
1 TTTATTTTTAACTCAACTTTATG
216607940 T
1 T
216607941 AAAATAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.60
Consensus pattern (23 bp):
TTTATTTTTAACTCAACTTTATG
Found at i:216615103 original size:40 final size:39
Alignment explanation
Indices: 216614977--216615142 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
216614967 CGGAATATAA
216614977 CCGGATATAA-CACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCAC-AATGCCTTCGGGTCTTAGC
* ** *
216615016 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCAC-AATGCCTTCGGGTCTTAGC
* *
216615056 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAGC
*** * * *
216615096 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAGC
216615135 CCGGATAT
1 CCGGATAT
216615143 CATTCAATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 25 0.23
40 82 0.77
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:216615126 original size:80 final size:79
Alignment explanation
Indices: 216614992--216615142 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
216614982 TATAACACGT
*
216614992 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
216615057 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
216615072 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
216615135 CCGGATAT
64 CCGGATAT
216615143 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:216620725 original size:80 final size:80
Alignment explanation
Indices: 216620641--216620789 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
216620631 TATGGTAACC
* * * *
216620641 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
216620705 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
216620721 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
216620786 CCGG
66 CCGG
216620790 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:216620731 original size:40 final size:38
Alignment explanation
Indices: 216620682--216620789 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
216620672 ATCACGATTT
*
216620682 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
216620722 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
216620762 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
216620790 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:216625318 original size:27 final size:28
Alignment explanation
Indices: 216625288--216625357 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
216625278 ATAGTGAATC
*
216625288 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
216625315 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
216625343 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
216625358 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:216625429 original size:42 final size:42
Alignment explanation
Indices: 216625365--216625471 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
216625355 GCTGTACAAT
* *
216625365 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
216625407 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
216625449 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
216625472 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:216632548 original size:27 final size:28
Alignment explanation
Indices: 216632518--216632587 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
216632508 ATAGTGAATC
*
216632518 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
216632545 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
216632573 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
216632588 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:216632659 original size:42 final size:42
Alignment explanation
Indices: 216632595--216632701 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
216632585 GCTGTACAAT
* *
216632595 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
216632637 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
216632679 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
216632702 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:216634449 original size:18 final size:18
Alignment explanation
Indices: 216634410--216634450 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
216634400 AAAATCCAAG
* *
216634410 TTATATCATGTTTTGCAG
1 TTATATCATGTTTTACAA
216634428 TTATATCATGTTTTACAA
1 TTATATCATGTTTTACAA
216634446 TTATA
1 TTATA
216634451 AAGTAAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (18 bp):
TTATATCATGTTTTACAA
Found at i:216639815 original size:27 final size:27
Alignment explanation
Indices: 216639785--216639938 Score: 164
Period size: 27 Copynumber: 5.5 Consensus size: 27
216639775 ATAGTGAATC
216639785 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
216639812 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
216639840 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * *
216639867 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* **
216639896 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
216639925 TGCACACTTAGTGC
1 CGCACACTTAGTGC
216639939 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 40 0.37
28 27 0.25
29 40 0.37
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:216639832 original size:29 final size:28
Alignment explanation
Indices: 216639785--216639938 Score: 145
Period size: 29 Copynumber: 5.5 Consensus size: 28
216639775 ATAGTGAATC
216639785 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* * **
216639812 CGCACACATAGTGC-TATATAATCAAATT
1 CGCACACTTAGTGCATATAAAATC-AGCT
216639840 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* ** *
216639867 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGC-ATATAAAATCAGCT
**
216639896 CGCACACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTG-CATATAAAAT-CAGCT
*
216639925 TGCACACTTAGTGC
1 CGCACACTTAGTGC
216639939 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
27 36 0.34
28 28 0.26
29 42 0.39
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCATATAAAATCAGCT
Found at i:216639856 original size:55 final size:55
Alignment explanation
Indices: 216639785--216639888 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
216639775 ATAGTGAATC
216639785 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
216639840 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
216639889 TTGAGCTCGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:216647658 original size:27 final size:28
Alignment explanation
Indices: 216647628--216647726 Score: 119
Period size: 29 Copynumber: 3.5 Consensus size: 28
216647618 ATAGTGAATC
*
216647628 CGCACACTTAGTGCTATA-AAATCAGCT
1 CGCACACTTAGTGCTATATAATTCAGCT
* *
216647655 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATATAA-TTCAGCT
* *
216647684 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATATAATT-CAGCT
*
216647713 TGCACACTTAGTGC
1 CGCACACTTAGTGC
216647727 CATTCTCGTC
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
27 17 0.28
28 4 0.07
29 40 0.66
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATTCAGCT
Found at i:216648372 original size:2 final size:2
Alignment explanation
Indices: 216648360--216648389 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
216648350 TGATGGTCGA
*
216648360 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
216648390 CAACTATGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:216652066 original size:68 final size:70
Alignment explanation
Indices: 216651994--216652191 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
216651984 ACACCCTGTA
* * * *
216651994 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
216652056 ATAAAT
65 ATAAAT
*
216652062 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
216652127 ATAAAT
65 ATAAAT
*
216652133 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
216652192 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:216652105 original size:41 final size:41
Alignment explanation
Indices: 216652060--216652177 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
216652050 TGAAAGATAA
216652060 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
216652101 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
216652131 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
216652172 ATGTAG
1 ATGTAG
216652178 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:216652117 original size:71 final size:71
Alignment explanation
Indices: 216652028--216652191 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
216652018 GAGATGTATC
216652028 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
216652093 AGGACA
66 AGGACA
216652099 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
216652164 AGGACA
66 AGGACA
216652170 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
216652192 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:216659620 original size:68 final size:70
Alignment explanation
Indices: 216659548--216659745 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
216659538 ACACCCTGTA
* * * *
216659548 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
216659610 ATAAAT
65 ATAAAT
*
216659616 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
216659681 ATAAAT
65 ATAAAT
*
216659687 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
216659746 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:216659659 original size:41 final size:41
Alignment explanation
Indices: 216659614--216659731 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
216659604 TGAAAGATAA
216659614 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
216659655 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
216659685 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
216659726 ATGTAG
1 ATGTAG
216659732 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:216659671 original size:71 final size:71
Alignment explanation
Indices: 216659582--216659745 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
216659572 GAGATGTATC
216659582 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
216659647 AGGACA
66 AGGACA
216659653 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
216659718 AGGACA
66 AGGACA
216659724 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
216659746 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:216663127 original size:26 final size:26
Alignment explanation
Indices: 216663098--216663153 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
216663088 TGATAAAAAT
216663098 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
216663124 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
216663150 TGAT
1 TGAT
216663154 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:216668826 original size:30 final size:29
Alignment explanation
Indices: 216668732--216668833 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
216668722 TATAGTGAAT
* * *
216668732 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
216668761 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
216668789 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
216668819 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
216668834 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:216671739 original size:75 final size:77
Alignment explanation
Indices: 216671578--216671749 Score: 285
Period size: 75 Copynumber: 2.3 Consensus size: 77
216671568 GAAGGACTAT
*
216671578 TATCATGGCCCGAAGCCAAACCATCTGATATGCATGGCTCGAAGTCAAATCGGTATAATACGCAC
1 TATCATGGCCCGAAGCCAAACCATCTGATATGCATGGCTCGAAGCCAAATCGGTATAATACGCAC
*
216671643 CTGAAGTGCTAA
66 CCGAAGTGCTAA
* *
216671655 TATCATGGCCCGAAGCCAAA-CATCTGATATGTATGGCTCGAAGCCAAATC-GTATAATACTCAC
1 TATCATGGCCCGAAGCCAAACCATCTGATATGCATGGCTCGAAGCCAAATCGGTATAATACGCAC
216671718 CCGAAGTGCTAA
66 CCGAAGTGCTAA
*
216671730 TATCATGGCCTGAAGCCAAA
1 TATCATGGCCCGAAGCCAAA
216671750 TCAACATATC
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
75 42 0.47
76 28 0.31
77 20 0.22
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (77 bp):
TATCATGGCCCGAAGCCAAACCATCTGATATGCATGGCTCGAAGCCAAATCGGTATAATACGCAC
CCGAAGTGCTAA
Found at i:216674751 original size:38 final size:38
Alignment explanation
Indices: 216674620--216674767 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
216674610 AATTGAATGA
* * * *
216674620 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
216674659 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
216674697 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
216674737 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
216674768 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:216674782 original size:78 final size:78
Alignment explanation
Indices: 216674619--216674783 Score: 201
Period size: 78 Copynumber: 2.1 Consensus size: 78
216674609 AAATTGAATG
*
216674619 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
216674684 TTGTGCTAGTGGCT
65 TTGTGCTAGTGGCT
* * * * *
216674698 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
216674761 TTTGTGC-ACGTGGTT
64 ATTGTGCTA-GTGGCT
216674776 ATATCCGG
1 ATATCCGG
216674784 TTATATTCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 46 0.62
79 16 0.22
80 11 0.15
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCT
Found at i:216679430 original size:38 final size:40
Alignment explanation
Indices: 216679312--216679529 Score: 210
Period size: 40 Copynumber: 5.7 Consensus size: 40
216679302 GCTACTCGTT
* *
216679312 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCA
* **
216679352 CAGATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
216679392 CAAATGCCTTC-GATCTTAGTCCGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
216679430 C-AATGCCTTCGGATC-TAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
* * * *
216679468 C----GACTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
*
216679505 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGTCCGGA
216679530 CATCATTCGA
Statistics
Matches: 156, Mismatches: 12, Indels: 20
0.83 0.06 0.11
Matches are distributed among these distances:
35 10 0.06
36 16 0.10
37 23 0.15
38 34 0.22
39 9 0.06
40 59 0.38
41 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:216679529 original size:76 final size:74
Alignment explanation
Indices: 216679340--216679529 Score: 215
Period size: 76 Copynumber: 2.5 Consensus size: 74
216679330 AGCCCGGTTA
* * * *
216679340 TAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGA
1 TAGTAACTAGCACA-AAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC--A-GACTTCGA
216679405 TCTTAGTCCGGAT
62 TCTTAGTCCGGAT
* * *
216679418 TAGTAACTCGCACAATGCCTTC-GGA-TCTAGTCCGGATTTAGTAACTCGCAC-GACTTCGGATC
1 TAGTAACTAGCACAAAGCCTTCGGGACT-TAGCCCGGATTTAGTAACTCGCACAGACTTC-GATC
216679480 TTAGTCCGGAT
64 TTAGTCCGGAT
*
216679491 ATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 -TAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCGGA
216679530 CATCATTCGA
Statistics
Matches: 99, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
72 5 0.05
73 15 0.15
74 6 0.06
75 14 0.14
76 36 0.36
77 9 0.09
78 14 0.14
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (74 bp):
TAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAGACTTCGATCTT
AGTCCGGAT
Found at i:216687489 original size:39 final size:39
Alignment explanation
Indices: 216687355--216687576 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 39
216687345 TACTCGTTCA
*
216687355 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCAC
*
216687394 AGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 A-ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
*
216687434 AAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCAC
*
216687474 AATGCCTTC-GGATCTTAGTCCGGA-TTAGTAACTCGCAC
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCAC
* * * *
216687512 GAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
216687553 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
216687577 CATCATTCGA
Statistics
Matches: 166, Mismatches: 9, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
38 14 0.08
39 52 0.31
40 89 0.54
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:216687536 original size:118 final size:119
Alignment explanation
Indices: 216687355--216687576 Score: 276
Period size: 118 Copynumber: 1.9 Consensus size: 119
216687345 TACTCGTTCA
*
216687355 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGAT
* * *
216687420 TTAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCAC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCAC
* * **
216687474 AATGCCTTC-GGATCTTAGTCCGGAT-TAGTAACTCGCAC-GAATGCCTTC-GGATCTTAGTCCG
1 AATGCCTTCGGGA-CATAGCCCGGATATAGTAACTCGCACAG-ATGCCTTCGGGA-CTTAACCCG
*
216687535 GATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
216687577 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
117 4 0.04
118 56 0.63
119 29 0.33
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:216693020 original size:41 final size:40
Alignment explanation
Indices: 216692925--216693021 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 40
216692915 TATCTCTATA
*
216692925 TCGCACACTTAGTGCCTCATGTAGCCGAAGATATTCCAAC
1 TCGCACACTTAGTGCCTCATGTAGCCGAAGATATTCAAAC
* * *
216692965 TTGCACACTTAGTGCCAT-TTGTAGCCGAAGCTATTTTCAAAC
1 TCGCACACTTAGTGCC-TCATGTAGCCGAAG--ATATTCAAAC
216693007 -CGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
216693022 GAACTTAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
40 26 0.53
41 15 0.31
42 8 0.16
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (40 bp):
TCGCACACTTAGTGCCTCATGTAGCCGAAGATATTCAAAC
Found at i:216698194 original size:61 final size:61
Alignment explanation
Indices: 216698099--216698221 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
216698089 AATGCTTAGT
216698099 AAGTTTTGAGCAATGAAATTAGGCTCAACTGAAGTATAGCATTCATATAACTAAACGGATA
1 AAGTTTTGAGCAATGAAATTAGGCTCAACTGAAGTATAGCATTCATATAACTAAACGGATA
216698160 AAGTTTTGAGCAATGAAATTAGGCTCAACTGAAGTATAGCATTCATATAACTAAACGGATA
1 AAGTTTTGAGCAATGAAATTAGGCTCAACTGAAGTATAGCATTCATATAACTAAACGGATA
216698221 A
1 A
216698222 TTTCATATAC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (61 bp):
AAGTTTTGAGCAATGAAATTAGGCTCAACTGAAGTATAGCATTCATATAACTAAACGGATA
Found at i:216700153 original size:39 final size:39
Alignment explanation
Indices: 216700099--216700191 Score: 159
Period size: 39 Copynumber: 2.4 Consensus size: 39
216700089 GAATGTTCGA
*
216700099 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACT
*
216700138 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACT
*
216700177 ATGATATCCGGGCTA
1 GTGATATCCGGGCTA
216700192 TTGTGCGAGT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 51 1.00
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACT
Found at i:216700257 original size:69 final size:65
Alignment explanation
Indices: 216700126--216700261 Score: 155
Period size: 69 Copynumber: 2.0 Consensus size: 65
216700116 CCCGAAGGCA
* ** *
216700126 ATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCT
1 ATTGTGCGAATTGTGATATCAGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCT
* * * * *
216700191 ATTGTGCGAGTTGTGATATCGAGTAGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCG
1 ATTGTGCGAATTGTGATATC-AG--GGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCG
216700256 GGCT
62 GGCT
216700260 AT
1 AT
216700262 GTCCCGAAGG
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
65 19 0.33
66 1 0.02
68 6 0.10
69 32 0.55
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (65 bp):
ATTGTGCGAATTGTGATATCAGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCT
Found at i:216707266 original size:40 final size:39
Alignment explanation
Indices: 216707155--216707305 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
216707145 TTAATCACGT
* * *
216707155 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
216707195 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
216707235 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
216707275 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
216707306 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:216707289 original size:80 final size:79
Alignment explanation
Indices: 216707155--216707305 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
216707145 TTAATCACGT
*
216707155 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
216707220 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
216707235 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
216707298 CCGGATAT
64 CCGGATAT
216707306 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:216715266 original size:40 final size:39
Alignment explanation
Indices: 216715155--216715305 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
216715145 TTAATCACGT
* * *
216715155 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
216715195 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
216715235 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
216715275 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
216715306 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:216715289 original size:80 final size:79
Alignment explanation
Indices: 216715155--216715305 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
216715145 TTAATCACGT
*
216715155 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
216715220 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
216715235 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
216715298 CCGGATAT
64 CCGGATAT
216715306 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:216719388 original size:20 final size:20
Alignment explanation
Indices: 216719363--216719406 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
216719353 GTGCTCCTGT
216719363 ATTGTTCGTAAAGAAGAAGG
1 ATTGTTCGTAAAGAAGAAGG
216719383 ATTGTTCGTAAAGAAGAAGG
1 ATTGTTCGTAAAGAAGAAGG
216719403 ATTG
1 ATTG
216719407 CTCAATGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.39, C:0.05, G:0.30, T:0.27
Consensus pattern (20 bp):
ATTGTTCGTAAAGAAGAAGG
Found at i:216731049 original size:2 final size:2
Alignment explanation
Indices: 216731044--216731072 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
216731034 ATGATTTGTG
216731044 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
216731073 GTTAAAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:216732237 original size:47 final size:46
Alignment explanation
Indices: 216732186--216732299 Score: 124
Period size: 45 Copynumber: 2.5 Consensus size: 46
216732176 CGACCACATT
*
216732186 ATGAGAGCCATTGTAAGACCATGTCTGGGACATGCATCGGC-ATCGAG
1 ATGAGAGCCAGTGTAAGACCATGTCT-GGACATGCATCGGCTA-CGAG
* * ** *
216732233 ATGAGTGCTAGTGTAAGA-CATGTCTGGACATGTGTTGGCTACGAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGACATGCATCGGCTACGAG
* *
216732278 ATGATAGTCAGTGTAAGACCAT
1 ATGAGAGCCAGTGTAAGACCAT
216732300 NNNNNNNNNN
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
45 29 0.53
46 11 0.20
47 15 0.27
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGACATGCATCGGCTACGAG
Found at i:216734484 original size:40 final size:40
Alignment explanation
Indices: 216734447--216734629 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
216734437 GCTACTCGTT
*
216734447 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
216734487 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCG--
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
216734525 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
216734564 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
216734605 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
216734630 CATCATTCGA
Statistics
Matches: 129, Mismatches: 7, Indels: 14
0.86 0.05 0.09
Matches are distributed among these distances:
37 18 0.14
38 22 0.17
39 15 0.12
40 61 0.47
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:216734562 original size:77 final size:80
Alignment explanation
Indices: 216734447--216734629 Score: 250
Period size: 77 Copynumber: 2.3 Consensus size: 80
216734437 GCTACTCGTT
*
216734447 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
216734510 GGATTTAGTAAC-TCG
65 GGATATAGTAACTTAG
**
216734525 CAAATGCCTTCGGGACTTA-CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
216734588 GATATAGTCACTTAG
66 GATATAGTAACTTAG
*
216734603 CACAAAGCCTTCGGGACTTAGCCCGGA
1 CA-AATGCCTTCGGGACTTAGCCCGGA
216734630 CATCATTCGA
Statistics
Matches: 93, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
76 3 0.03
77 44 0.47
78 24 0.26
79 16 0.17
80 6 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAG
Found at i:216742638 original size:39 final size:40
Alignment explanation
Indices: 216742543--216742726 Score: 243
Period size: 39 Copynumber: 4.7 Consensus size: 40
216742533 GCTACTCGTT
*
216742543 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
216742583 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
216742623 -AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
216742662 C-AATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
216742702 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
216742727 CATCATTCGA
Statistics
Matches: 130, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
38 3 0.02
39 64 0.49
40 56 0.43
41 7 0.05
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:216742646 original size:79 final size:80
Alignment explanation
Indices: 216742543--216742726 Score: 243
Period size: 79 Copynumber: 2.3 Consensus size: 80
216742533 GCTACTCGTT
*
216742543 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCAC-AATGCCTTC-GGATCTTAACCC
* *
216742606 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* **
216742623 -AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAATGCCTTCGGATCTTAACCCGGA
*
216742687 TATAGTCACTTAGCA
66 TATAGTAACTTAGCA
216742702 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
216742727 CATCATTCGA
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
77 3 0.03
78 25 0.27
79 59 0.64
80 5 0.05
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:216745433 original size:39 final size:39
Alignment explanation
Indices: 216745330--216745537 Score: 224
Period size: 39 Copynumber: 5.3 Consensus size: 39
216745320 TATTCGAATG
* * *
216745330 ATATCCGGGCTAAG-TCCGAAGGCTTTTATGCTAGTGACT
1 ATATCC-GGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
216745369 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGG-CTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
216745409 ATATCCGGCAAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
216745448 ATATCCGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * **
216745487 ATATCTGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATC-CGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
216745526 ATATCCGGCTAA
1 ATATCCGGCTAA
216745538 ATCCCAAAGT
Statistics
Matches: 143, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
38 9 0.06
39 89 0.62
40 43 0.30
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (39 bp):
ATATCCGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:216749969 original size:40 final size:40
Alignment explanation
Indices: 216749924--216750053 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
216749914 CGGAATATAA
216749924 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
216749964 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
216750004 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
216750044 CCGGATATAA
1 CCGGATATAA
216750054 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:216757978 original size:40 final size:40
Alignment explanation
Indices: 216757933--216758100 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
216757923 CGGAATATAA
216757933 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
216757973 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
216758013 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
216758053 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
216758093 CCGGATAT
1 CCGGATAT
216758101 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:216758083 original size:80 final size:80
Alignment explanation
Indices: 216757949--216758098 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
216757939 ATAACCACGT
* *
216757949 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
216758014 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
216758029 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
216758092 CCCGGAT
64 CCCGGAT
216758099 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:216767584 original size:40 final size:40
Alignment explanation
Indices: 216767539--216767705 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
216767529 CGGAATATAA
216767539 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
216767579 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
216767619 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
216767659 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
216767698 CCGGATAT
1 CCGGATAT
216767706 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:216770186 original size:39 final size:40
Alignment explanation
Indices: 216770086--216770231 Score: 165
Period size: 40 Copynumber: 3.7 Consensus size: 40
216770076 TCGAATGATG
* * *
216770086 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
216770126 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
216770166 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* *
216770204 CCCGGGTTAAGTCCCGAAGGCATTCGTG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTG
216770232 TGAGTCGCTA
Statistics
Matches: 88, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
38 22 0.25
39 23 0.26
40 36 0.41
41 7 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:216770231 original size:78 final size:80
Alignment explanation
Indices: 216770086--216770236 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 80
216770076 TCGAATGATG
* * * *
216770086 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
216770151 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
216770166 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
216770228 CGTGTGAGT
65 CGTGCGAGT
216770237 CGCTATGACC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 15 0.24
80 11 0.18
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:216771682 original size:133 final size:133
Alignment explanation
Indices: 216771524--216771782 Score: 500
Period size: 133 Copynumber: 1.9 Consensus size: 133
216771514 CAAGATATGA
216771524 TTTTTAAGGAAACAGTGATGCAGTAACCAGCTTGTCTGGAAATTTCTAAATGGACTGTGAAAATA
1 TTTTTAAGGAAACAGTGATGCAGTAACCAGCTTGTCTGGAAATTTCTAAATGGACTGTGAAAATA
216771589 GTTAAGTCTGTGTGCACCTTGTGTTCGATTCCGGTAACGGACTCGGGTACGGGGTGTTACAATTT
66 GTTAAGTCTGTGTGCACCTTGTGTTCGATTCCGGTAACGGACTCGGGTACGGGGTGTTACAATTT
216771654 TAT
131 TAT
**
216771657 TTTTTAAGGCGACAGTGATGCAGTAACCAGCTTGTCTGGAAATTTCTAAATGGACTGTGAAAATA
1 TTTTTAAGGAAACAGTGATGCAGTAACCAGCTTGTCTGGAAATTTCTAAATGGACTGTGAAAATA
216771722 GTTAAGTCTGTGTGCACCTTGTGTTCGATTCCGGTAACGGACTCGGGTACGGGGTGTTACA
66 GTTAAGTCTGTGTGCACCTTGTGTTCGATTCCGGTAACGGACTCGGGTACGGGGTGTTACA
216771783 TTCAAGACCA
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 124 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (133 bp):
TTTTTAAGGAAACAGTGATGCAGTAACCAGCTTGTCTGGAAATTTCTAAATGGACTGTGAAAATA
GTTAAGTCTGTGTGCACCTTGTGTTCGATTCCGGTAACGGACTCGGGTACGGGGTGTTACAATTT
TAT
Found at i:216778275 original size:66 final size:68
Alignment explanation
Indices: 216778199--216778385 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
216778189 TAGTACCACT
*
216778199 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
216778261 CACG
65 CACG
216778265 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
216778330 ATCACG
63 ATCACG
216778336 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
216778386 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:216778310 original size:71 final size:71
Alignment explanation
Indices: 216778222--216778385 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
216778212 CGATTTGTCT
216778222 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
216778287 CTTTCA
66 CTTTCA
216778293 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
216778358 CTTTCA
66 CTTTCA
216778364 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
216778386 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:216778423 original size:71 final size:70
Alignment explanation
Indices: 216778222--216778419 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
216778212 CGATTTGTCT
* * *
216778222 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
216778287 CTTTCA
65 CTTTCA
* * *
216778293 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
216778358 CTTTCA
65 CTTTCA
* *
216778364 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
216778420 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:216785837 original size:66 final size:68
Alignment explanation
Indices: 216785761--216785947 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
216785751 TAGTACCACT
*
216785761 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
216785823 CACG
65 CACG
216785827 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
216785892 ATCACG
63 ATCACG
216785898 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
216785948 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:216785872 original size:71 final size:71
Alignment explanation
Indices: 216785784--216785947 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
216785774 CGATTTGTCT
216785784 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
216785849 CTTTCA
66 CTTTCA
216785855 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
216785920 CTTTCA
66 CTTTCA
216785926 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
216785948 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:216785985 original size:71 final size:70
Alignment explanation
Indices: 216785784--216785981 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
216785774 CGATTTGTCT
* * *
216785784 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
216785849 CTTTCA
65 CTTTCA
* * *
216785855 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
216785920 CTTTCA
65 CTTTCA
* *
216785926 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
216785982 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:216789311 original size:28 final size:29
Alignment explanation
Indices: 216789244--216789344 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
216789234 ATAGTGAATC
*
216789244 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
216789273 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
216789301 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
216789331 CGCACACTTAGTGC
1 CGCACACTTAGTGC
216789345 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:216797148 original size:28 final size:29
Alignment explanation
Indices: 216797081--216797181 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
216797071 ATAGTGAATC
*
216797081 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
216797110 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
216797138 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
216797168 CGCACACTTAGTGC
1 CGCACACTTAGTGC
216797182 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:216798518 original size:18 final size:19
Alignment explanation
Indices: 216798485--216798523 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
216798475 TCCACACCCA
216798485 TTTTTTTTTCATCATTTCTT
1 TTTTTTTTTCA-CATTTCTT
216798505 TTTTTTTTTC-CATTTCTT
1 TTTTTTTTTCACATTTCTT
216798523 T
1 T
216798524 ATTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTTTTTCACATTTCTT
Found at i:216799653 original size:40 final size:40
Alignment explanation
Indices: 216799596--216799787 Score: 296
Period size: 40 Copynumber: 4.8 Consensus size: 40
216799586 CGGATGATAA
216799596 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
216799636 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * *
216799676 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
216799716 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
216799756 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
216799788 AGCTATATCC
Statistics
Matches: 138, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 1 0.01
40 137 0.99
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:216803516 original size:29 final size:29
Alignment explanation
Indices: 216803484--216803586 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
216803474 GTGACGAGAT
* *
216803484 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
216803513 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
216803542 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
216803571 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
216803587 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:216807535 original size:40 final size:40
Alignment explanation
Indices: 216807469--216807619 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
216807459 AAATTGAATG
* *
216807469 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
216807508 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
216807548 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
216807588 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
216807620 ACATGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:216807603 original size:80 final size:79
Alignment explanation
Indices: 216807471--216807619 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
216807461 ATTGAATGAT
*
216807471 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
216807536 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
216807550 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
216807613 TTTGTGC
63 ATTGTGC
216807620 ACATGGTTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 16 0.26
80 45 0.74
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Done.