Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 688 of 770
Found at i:216807634 original size:80 final size:79
Alignment explanation
Indices: 216807469--216807635 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
216807459 AAATTGAATG
*
216807469 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
216807534 TTGTGCTAGTGGCT
66 TTGTGCTAATGGCT
* * * * *
216807548 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
216807611 CATTTGTGC-ACATGGTT
63 CAATTGTGCTA-ATGGCT
216807628 ATATCCGG
1 ATATCCGG
216807636 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 18 0.24
80 56 0.76
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAATGGCT
Found at i:216824524 original size:29 final size:29
Alignment explanation
Indices: 216824482--216824540 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
216824472 ATTTTTTAAC
216824482 TGATTGAATAATGTGAATAATAAATGAGT
1 TGATTGAATAATGTGAATAATAAATGAGT
216824511 TGATTGAATAATGTGAATAATAAATGAGT
1 TGATTGAATAATGTGAATAATAAATGAGT
216824540 T
1 T
216824541 CAATTTACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (29 bp):
TGATTGAATAATGTGAATAATAAATGAGT
Found at i:216824884 original size:42 final size:42
Alignment explanation
Indices: 216824822--216824975 Score: 168
Period size: 42 Copynumber: 3.6 Consensus size: 42
216824812 TGAAACTATA
* *
216824822 TGTAAGACCATATCTGGGATATGGCATCAGTATGAGACTTT-G
1 TGTAAGACCATATCTAGGATATGGCATCAATATGAGA-TTTCG
216824864 TGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTCG
1 TGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTCG
** * ** * * *
216824906 TGTAAGACCATAGT-TTCGCTATTGGCATTGATACGAGATTACA
1 TGTAAGACCATA-TCTAGGATA-TGGCATCAATATGAGATTTCG
*
216824949 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTAGGATATGGCAT
216824976 TGGTACAATT
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 3 0.03
42 59 0.62
43 33 0.35
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTCG
Found at i:216825449 original size:32 final size:32
Alignment explanation
Indices: 216825408--216825478 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
216825398 GACATTCTGA
*
216825408 GTTATGACATGTATAGGGACTTATTTATTTTG
1 GTTATGACATGTATAGGGACTTAGTTATTTTG
216825440 GTTATGACATGTATAGGGACTTAGTTATTTTG
1 GTTATGACATGTATAGGGACTTAGTTATTTTG
216825472 GTTATGA
1 GTTATGA
216825479 GTCATAATTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.25, C:0.06, G:0.24, T:0.45
Consensus pattern (32 bp):
GTTATGACATGTATAGGGACTTAGTTATTTTG
Found at i:216828991 original size:40 final size:40
Alignment explanation
Indices: 216828946--216829075 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
216828936 CGGAATACAA
216828946 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
216828986 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
216829026 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
216829066 CCGGATATAA
1 CCGGATATAA
216829076 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:216835217 original size:40 final size:40
Alignment explanation
Indices: 216835151--216835317 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
216835141 AAATTGAATG
* * *
216835151 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
216835190 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
216835230 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
216835270 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
216835310 ATATCCGG
1 ATATCCGG
216835318 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:216844940 original size:40 final size:40
Alignment explanation
Indices: 216844849--216844997 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
216844839 AAATTGAATG
* * *
216844849 ATATCCGGGCTAAG-CCCGAAGACAATTATGCT-G-AAAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
* * *
216844886 TTATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
* * *
216844926 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGAT
* *
216844966 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
216844998 AAATCGTGAT
Statistics
Matches: 94, Mismatches: 13, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
37 12 0.13
38 16 0.17
39 4 0.04
40 60 0.64
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
Found at i:216845012 original size:40 final size:38
Alignment explanation
Indices: 216844845--216845014 Score: 152
Period size: 40 Copynumber: 4.4 Consensus size: 38
216844835 TGAGAAATTG
*
216844845 AATG-ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
216844883 AAT-T-TATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
216844919 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
216844959 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
216844999 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
216845015 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
35 2 0.02
36 4 0.04
37 14 0.13
38 11 0.10
39 3 0.03
40 72 0.67
41 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:216853041 original size:40 final size:39
Alignment explanation
Indices: 216852873--216853043 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
216852863 AGAAATTGAA
* *
216852873 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
216852913 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
216852953 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
216852993 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
216853033 TGATATCCGGG
1 TGATATCCGGG
216853044 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:216860517 original size:29 final size:27
Alignment explanation
Indices: 216860483--216860585 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
216860473 TACTCAATCA
*
216860483 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
216860512 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
216860541 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
216860570 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
216860586 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:216868506 original size:29 final size:27
Alignment explanation
Indices: 216868472--216868574 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
216868462 TACTCAATCA
*
216868472 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
216868501 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
216868530 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
216868559 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
216868575 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:216872014 original size:93 final size:93
Alignment explanation
Indices: 216871902--216872073 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
216871892 CGCCCATAAG
* *
216871902 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
216871967 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
216871995 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
216872060 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
216872074 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:216872070 original size:46 final size:46
Alignment explanation
Indices: 216871895--216872070 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
216871885 TGTAACCCGC
* * *
216871895 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
216871941 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
216871991 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
216872034 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
216872071 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:216875944 original size:15 final size:16
Alignment explanation
Indices: 216875926--216875958 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
216875916 CGTTTTACTT
*
216875926 TTCA-TTGGTTTTTTA
1 TTCATTTGGTTTTGTA
216875941 TTCATTTGGTTTTGTA
1 TTCATTTGGTTTTGTA
216875957 TT
1 TT
216875959 TGTGTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.12, C:0.06, G:0.15, T:0.67
Consensus pattern (16 bp):
TTCATTTGGTTTTGTA
Found at i:216881152 original size:58 final size:59
Alignment explanation
Indices: 216881061--216881181 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
216881051 CCCTCCCTAA
* * *
216881061 TCCCAAAAGGTAGAATTCGGACACCGTTACATGTTCGGTACCCAATAATTAATGAATCG
1 TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* * *
216881120 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
216881178 TCCC
1 TCCC
216881182 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGACACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:216881614 original size:24 final size:24
Alignment explanation
Indices: 216881578--216881679 Score: 116
Period size: 24 Copynumber: 4.2 Consensus size: 24
216881568 CCGGTTAGGT
216881578 TCCCGGCGGTGCTCCAGCGATCCA
1 TCCCGGCGGTGCTCCAGCGATCCA
* * *
216881602 TCCTGGTGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCAGCGATCCA
* *
216881626 TCCCGGCGGTGCTCC-GACAAGCCA
1 TCCCGGCGGTGCTCCAG-CGATCCA
* * *
216881650 TCCCGGCGGTGCTCCGGTGAGCCA
1 TCCCGGCGGTGCTCCAGCGATCCA
216881674 TCCCGG
1 TCCCGG
216881680 AATATCGAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
23 1 0.01
24 65 0.97
25 1 0.01
ACGTcount: A:0.11, C:0.39, G:0.32, T:0.18
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCAGCGATCCA
Found at i:216881651 original size:48 final size:48
Alignment explanation
Indices: 216881578--216881679 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
216881568 CCGGTTAGGT
* * * * *
216881578 TCCCGGCGGTGCTCCAGCGATCCATCCTGGTGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCAGCAAGCCATCCCGGCGGTGCTCCGGCGAGCCA
*
216881626 TCCCGGCGGTGCTCC-GACAAGCCATCCCGGCGGTGCTCCGGTGAGCCA
1 TCCCGGCGGTGCTCCAG-CAAGCCATCCCGGCGGTGCTCCGGCGAGCCA
216881674 TCCCGG
1 TCCCGG
216881680 AATATCGAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 1 0.02
48 46 0.98
ACGTcount: A:0.11, C:0.39, G:0.32, T:0.18
Consensus pattern (48 bp):
TCCCGGCGGTGCTCCAGCAAGCCATCCCGGCGGTGCTCCGGCGAGCCA
Found at i:216881963 original size:42 final size:42
Alignment explanation
Indices: 216881909--216882836 Score: 1000
Period size: 42 Copynumber: 22.2 Consensus size: 42
216881899 CTAGGACGTT
*
216881909 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGCCCCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * * *
216881951 TCGTTCGGGAGCCTCGGGCACCACCGGCACCTTGGTCCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
216881993 AT-GTGC-GGAGCCTAGGGCACCATCGGCAACCTAGGCCCCTGG
1 -TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG
* ***
216882035 TCGCGC-GGAGCCT--AATACCATCGGCAACCTA-GCCCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG
* *
216882074 TCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
216882116 TCGTGCGAGAGCCTC-GGCACCATCGGAACCTAGGCCC-TGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * *
216882156 TCGTGCGGGAGCCTCAGCCACCATCGGCAACCTAGGCGC-TGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG
* *
216882198 TCGTGCGGGAGCCTCGGCCTCCATCGGCACCTAGGCACC-TGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGC-CCTTGG
* ** * * *
216882240 TCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCCTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG
* * *
216882283 TCATGCGAGAGCCTC-GGCACCATCGGCACCTAGGCCCCTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
216882324 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGC
1 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG
*
216882367 TCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
216882408 TCGTGCGGGAGCCTC-GGCACCATCGACACCTAGGCCCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
216882449 AT-GTGCGGGAGCCTCGGCCACCATCAGCAACCTAGGCCC-TGG
1 -TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG
216882491 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG
* *
216882534 TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGA
1 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG
* *
216882576 TCGTGCGGGAGCCTCAGCCACCATCGGCACCTAGGCCCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
** *
216882618 AT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGG
1 -TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG
* *
216882661 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG
* * * * *** *
216882704 AT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGTTTGA
1 -TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * * * **
216882746 T-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * *
216882787 AT-GTGCGGGAGCCTTC-GACACCATCGGCAACCTAGGACGTTGG
1 -TCGTGCGGGAGCC-TCGGGCACCATCGGC-ACCTAGGCCCTTGG
216882830 T-GTGCGG
1 TCGTGCGG
216882837 TGCCTCGAGC
Statistics
Matches: 774, Mismatches: 83, Indels: 58
0.85 0.09 0.06
Matches are distributed among these distances:
39 12 0.02
40 40 0.05
41 201 0.26
42 334 0.43
43 186 0.24
44 1 0.00
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.18
Consensus pattern (42 bp):
TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
Found at i:216882431 original size:251 final size:252
Alignment explanation
Indices: 216881909--216882719 Score: 1058
Period size: 251 Copynumber: 3.2 Consensus size: 252
216881899 CTAGGACGTT
* * *
216881909 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGCCCCTTGG-TCGTTCGGGAGCCTCGGGCACC
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGCCACC
* * * * *
216881973 ACCGGCACCTTGGTCCTTGG--ATGTGCGGAGCCTAGGGCACCATCGGCAACCTAGGCCCCTGGT
65 ATCGGCACCTAGG-CCCTGGTCATGT-AGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGT
* *** *
216882036 CGCGCG-GAGCCT-AATACCATCGGCAACCTA-GCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
128 CGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
216882098 CGG-AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGAACCTAGGCCC-TGG
193 CGGCAACCTAGGCCCTTGATCGTGCGAGAGCCTCGGCACCATCGGCACCTAGGCCCTTGG
* * * *
216882156 TCGTGCGGGAGCCTCAGCCACCATCGGCAACCTAGGCGC-TGG-TCGTGCGGGAGCCTCGGCCTC
1 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGCCAC
* *
216882219 CATCGGCACCTAGGCACCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCCTGGT
64 CATCGGCACCTAGGC-CCTGGTCATGTAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGT
* *
216882284 CATGCGAGAGCCTCGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
128 CGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
216882348 CGGCAACCTAGGCCCTTGCTCGTGCGAGAGCCTCGGGACCATCGGCACCTAGGCCCTTGG
193 CGGCAACCTAGGCCCTTGATCGTGCGAGAGCCTCGGCACCATCGGCACCTAGGCCCTTGG
*
216882408 TCGTGCGGGAGCCTC-GGCACCATCGACACCTAGGCCCTTGGATGTGCGGGAGCCTCGGCCACCA
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGCCACCA
* * ** *
216882472 TCAGCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
66 TCGGC-ACCTAGGCCCTGGTCATGTAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCG
* * *
216882537 TGCGAGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGGGAGCCTCAGCCACCATC
130 TGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
216882601 GGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGG
194 GGCAACCTAGGCCCTT-GATCGTGCGAGAGCCTCG-GCACCATCGGC-ACCTAGGCCCTTGG
* *
216882661 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCG
1 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGGATGTGCGGGAGCCTCG
216882720 AGCAGCATTG
Statistics
Matches: 497, Mismatches: 48, Indels: 30
0.86 0.08 0.05
Matches are distributed among these distances:
246 1 0.00
247 63 0.13
248 46 0.09
249 15 0.03
250 51 0.10
251 167 0.34
252 80 0.16
253 35 0.07
254 17 0.03
255 22 0.04
ACGTcount: A:0.16, C:0.35, G:0.32, T:0.17
Consensus pattern (252 bp):
TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGCCACCA
TCGGCACCTAGGCCCTGGTCATGTAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGT
GCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
CAACCTAGGCCCTTGATCGTGCGAGAGCCTCGGCACCATCGGCACCTAGGCCCTTGG
Found at i:216890163 original size:173 final size:176
Alignment explanation
Indices: 216889873--216890220 Score: 519
Period size: 173 Copynumber: 2.0 Consensus size: 176
216889863 GTAAGGAGTT
* *
216889873 AGTTAAACACTTGGCCGTGCCGCCCCCGGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGGGT
1 AGTTAAACACTTGGCCGTGCCGCCCCCGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGAGT
* * * *
216889938 GCGAGCTCCCAAGTGTTGGCGGCCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTGC-TGCC-AT
66 GCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCAT-CATGCCAAT
*
216890001 GCCA-T-ACTTCTTGTATTTGTTTTGGGCCAACAGAAAAAATTTCTA
130 GCCATTCACTTCTTGTATTTATTTTGGGCCAACAGAAAAAATTTCTA
216890046 AGTTAAACACTTGGCCGTGCCGCCCCCTCGGGAAACATCGCAC-ACGGGGGCCGTGGTGGTGCGA
1 AGTTAAACACTTGGCCGTGCCG-CCCC-CGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGA
216890110 GTGCGAGCTCCCAACTGTTGGCGGCCC-GGCACTTGTTCAATTATCTACCGTGCCATCATGCCAT
64 GTGCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCATCATGCCA-
** *
216890174 ATTTCATTCGGCTTCTTGTATTTATTTTGGGCCAACAGAAAAAATTT
128 ATGCCATTC-ACTTCTTGTATTTATTTTGGGCCAACAGAAAAAATTT
216890221 TCAATTAAAA
Statistics
Matches: 157, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
172 1 0.01
173 52 0.33
174 50 0.32
175 18 0.11
176 1 0.01
178 35 0.22
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.26
Consensus pattern (176 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGAGT
GCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCATCATGCCAATG
CCATTCACTTCTTGTATTTATTTTGGGCCAACAGAAAAAATTTCTA
Found at i:216890618 original size:23 final size:23
Alignment explanation
Indices: 216890582--216890629 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
216890572 GGTTAGGTTC
* * *
216890582 CCGGCGGTGCTCCGACGATCCAT
1 CCGGCGATGATCCGACGAGCCAT
*
216890605 CCGGCGATGATCCGGCGAGCCAT
1 CCGGCGATGATCCGACGAGCCAT
216890628 CC
1 CC
216890630 CGGGATACAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.15, C:0.40, G:0.31, T:0.15
Consensus pattern (23 bp):
CCGGCGATGATCCGACGAGCCAT
Found at i:216899637 original size:39 final size:39
Alignment explanation
Indices: 216899590--216899772 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
216899580 AATGTTCGAG
216899590 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
216899629 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
216899668 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
216899707 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
216899747 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
216899773 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:216907059 original size:39 final size:39
Alignment explanation
Indices: 216907012--216907194 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
216907002 AATGTTCGAG
216907012 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
216907051 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
216907090 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
216907129 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
216907169 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
216907195 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:216914477 original size:38 final size:39
Alignment explanation
Indices: 216914395--216914576 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
216914385 AATGTTCGAG
216914395 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
216914434 TGATATCCGGGCTAAGCCCGAAGGCAATTG-GCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
216914472 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
216914511 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
216914551 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
216914577 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 38 0.30
39 50 0.40
40 38 0.30
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:216918764 original size:24 final size:24
Alignment explanation
Indices: 216918714--216918765 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
216918704 TTGATCAGTT
* * *
216918714 GAGGGATTTGATGAGATATTTGAG
1 GAGGGATTTGAGGAGAGATTAGAG
* *
216918738 GAGGGATTTTAGGAGAGATTAGGG
1 GAGGGATTTGAGGAGAGATTAGAG
216918762 GAGG
1 GAGG
216918766 AAAAAGTGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.00, G:0.44, T:0.27
Consensus pattern (24 bp):
GAGGGATTTGAGGAGAGATTAGAG
Found at i:216920190 original size:27 final size:27
Alignment explanation
Indices: 216920151--216920324 Score: 222
Period size: 27 Copynumber: 6.4 Consensus size: 27
216920141 CAATTTGATG
216920151 AAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
216920178 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* * *
216920205 GAATTACTATTTTGACCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* * * *
216920232 ATATGATTGTTTTGCCCTTATGTAGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
216920259 GAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* * * *
216920286 AAATGACTATATTGCCCTTATTTGCTC
1 AAATGACTATTTTGCCCTTATGTGGTA
*
216920313 AGATGACTATTT
1 AAATGACTATTT
216920325 ACCCCTATGT
Statistics
Matches: 123, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATGTGGTA
Found at i:216920243 original size:54 final size:54
Alignment explanation
Indices: 216920152--216920306 Score: 247
Period size: 54 Copynumber: 2.9 Consensus size: 54
216920142 AATTTGATGA
*
216920152 AATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTGGTAG
1 AATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTAGTAG
* * * *
216920206 AATTACTATTTTGACCTTATGTGGTAATATGATTGTTTTGCCCTTATGTAGTAG
1 AATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTAGTAG
* *
216920260 AATGACTATTTTGCCCTTATGTGGTAAAATGACTATATTGCCCTTAT
1 AATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTAT
216920307 TTGCTCAGAT
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.43
Consensus pattern (54 bp):
AATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTATGTAGTAG
Found at i:216921673 original size:68 final size:68
Alignment explanation
Indices: 216921564--216921700 Score: 220
Period size: 68 Copynumber: 2.0 Consensus size: 68
216921554 TAAGGACCAA
*
216921564 ATTGAATAAATTATAAAACTTGGATTCCAGAAGCAATTTGCATGAAATTGCTTTAGATTATTAAT
1 ATTGAATAAATTACAAAACTTGGATTCCAGAAGCAATTTGCATGAAATTGCTTTAGATTATTAAT
216921629 TAG
66 TAG
* * * * *
216921632 ATTGAATAAATTGCAAAACTTGGATTCTAGAAGGAATTTGCATTAAATTTCTTTAGATTATTAAT
1 ATTGAATAAATTACAAAACTTGGATTCCAGAAGCAATTTGCATGAAATTGCTTTAGATTATTAAT
216921697 TAG
66 TAG
216921700 A
1 A
216921701 ACGTCTTAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (68 bp):
ATTGAATAAATTACAAAACTTGGATTCCAGAAGCAATTTGCATGAAATTGCTTTAGATTATTAAT
TAG
Found at i:216926771 original size:40 final size:40
Alignment explanation
Indices: 216926726--216926893 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
216926716 CGGAATATAA
216926726 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
216926766 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
216926806 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
216926846 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
216926886 CCGGATAT
1 CCGGATAT
216926894 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:216934803 original size:40 final size:40
Alignment explanation
Indices: 216934758--216934925 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
216934748 CGGAATATAA
216934758 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
216934798 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
216934838 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
216934878 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
216934918 CCGGATAT
1 CCGGATAT
216934926 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:216941183 original size:19 final size:21
Alignment explanation
Indices: 216941137--216941185 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
216941127 AAGAAATGAA
*
216941137 AAAAAAAAAAAAGAGAATATG
1 AAAAAAAAAAAAGAGAATAGG
* *
216941158 AAGAAAAACAAAGA-AA-AGG
1 AAAAAAAAAAAAGAGAATAGG
216941177 AAAAAAAAA
1 AAAAAAAAA
216941186 GTGTTCATTC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 9 0.39
20 2 0.09
21 12 0.52
ACGTcount: A:0.80, C:0.02, G:0.14, T:0.04
Consensus pattern (21 bp):
AAAAAAAAAAAAGAGAATAGG
Found at i:216942376 original size:29 final size:29
Alignment explanation
Indices: 216942343--216942407 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
216942333 GTGACGAGAT
*
216942343 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
216942372 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
216942401 CGGCACT
1 TGGCACT
216942408 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:216944897 original size:40 final size:39
Alignment explanation
Indices: 216944849--216945019 Score: 220
Period size: 39 Copynumber: 4.3 Consensus size: 39
216944839 ACGACTAGCT
*
216944849 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAA-CCCGGATT-TAGTAACTCGCA
** *
216944889 TGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
*
216944929 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
*
216944968 CAAATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* *
216945007 CGAACGCCTTCGG
1 CAAATGCCTTCGG
216945020 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
39 73 0.61
40 43 0.36
41 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
Found at i:216944963 original size:39 final size:40
Alignment explanation
Indices: 216944849--216945072 Score: 226
Period size: 40 Copynumber: 5.7 Consensus size: 40
216944839 ACGACTAGCT
*
216944849 CAAATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAA-CCCGGATT-TAGTAACTCGCA
** *
216944889 TGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
216944929 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
216944968 CAAATGCCTTCGGG-CTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** * * * **
216945007 CGAACGCCTTC-GGATCTTAGTCCGGATATGGTCACATAACA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
216945048 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
216945073 CATCATTCAA
Statistics
Matches: 159, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 71 0.45
40 73 0.46
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:216947326 original size:40 final size:39
Alignment explanation
Indices: 216947167--216947328 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
216947157 TGTGTATGAA
*
216947167 TGTGCGAATTGTGATATCC-GGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
216947205 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
216947244 TGTGCGAGCTATAATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
216947283 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
216947323 TGTGCG
1 TGTGCG
216947329 GGTTACCATA
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 18 0.16
39 78 0.69
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:216947344 original size:40 final size:39
Alignment explanation
Indices: 216947167--216947359 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
216947157 TGTGTATGAA
* *
216947167 TGTGCGAATTGTGATATCC-GGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
216947205 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
216947244 TGTGCGAGCTATAATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
216947283 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
216947323 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
216947360 GTTTGAACGA
Statistics
Matches: 137, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
38 18 0.13
39 78 0.57
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:216947386 original size:79 final size:78
Alignment explanation
Indices: 216947186--216947397 Score: 221
Period size: 78 Copynumber: 2.7 Consensus size: 78
216947176 TGTGATATCC
** * *
216947186 GGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGA
1 GGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGA
* *
216947251 GCTATAATATCCG
66 GCTACAATAACCG
** * *
216947264 GGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATTGTGCG
* * *
216947329 GGTTACCATAACCG
65 AGCTACAATAACCG
* ** *
216947343 GGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 GGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
216947398 TATGTGATTT
Statistics
Matches: 116, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
78 46 0.40
79 45 0.39
80 24 0.21
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.23
Consensus pattern (78 bp):
GGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGA
GCTACAATAACCG
Found at i:216949619 original size:40 final size:40
Alignment explanation
Indices: 216949534--216949684 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
216949524 AATTGAATGA
* * * **
216949534 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
216949574 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
216949615 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
216949654 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
216949685 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:216949698 original size:40 final size:40
Alignment explanation
Indices: 216949571--216949700 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
216949561 ATGCTGGAAA
* * *
216949571 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
216949611 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
216949651 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
216949691 TTATATCCGG
1 TTATATCCGG
216949701 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:216952922 original size:54 final size:53
Alignment explanation
Indices: 216952852--216953211 Score: 465
Period size: 54 Copynumber: 6.7 Consensus size: 53
216952842 AATCTCATAT
* *
216952852 CTGTAGGCTAGCATTACTAAAATACCCCTATAAAGGTAGAATTACCGAAATACC
1 CTGTAGGGTAGAATTACTAAAATACCCCTAT-AAGGTAGAATTACCGAAATACC
* *
216952906 TTGTAGGGTAGAATTACTAAACATACCCCTGTAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTAAA-ATACCCCTATAAGGTAGAATTACCGAAATA-CC
* * *
216952961 CTATAGGGTAGAATTACTGAAATACCCTTATAAGGTAGAATTACCGAAATACTC
1 CTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATAC-C
* *
216953015 CTATAGGGTAGAATTACT-AAATACCCCCTGTAAGGTAGAATTACCGAAATACC
1 CTGTAGGGTAGAATTACTAAAATA-CCCCTATAAGGTAGAATTACCGAAATACC
* *
216953068 CTGTATGGTAGAATTACT-AAATA-CCCTATAAGGTAGAATTACTGAAATACC
1 CTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACC
* * * *
216953119 GCTATAGGGTAGAATTACTAAAATGCCCCTCTAGGGTAGAATTACCGAAATACC
1 -CTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACC
* * * *
216953173 CTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAG
1 C-TGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAG
216953212 GACTATCGAT
Statistics
Matches: 272, Mismatches: 26, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
51 26 0.10
52 16 0.06
53 33 0.12
54 168 0.62
55 29 0.11
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (53 bp):
CTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACC
Found at i:216952958 original size:27 final size:27
Alignment explanation
Indices: 216952871--216953211 Score: 359
Period size: 27 Copynumber: 12.7 Consensus size: 27
216952861 AGCATTACTA
*
216952871 AAATACCCCTATAAAGGTAGAATTACCG
1 AAATACCCCTAT-AGGGTAGAATTACCG
* * **
216952899 AAATA-CCTTGTAGGGTAGAATTACTA
1 AAATACCCCTATAGGGTAGAATTACCG
* *
216952925 AACATACCCCTGTAAGGTAGAATTACCG
1 AA-ATACCCCTATAGGGTAGAATTACCG
*
216952953 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAATTACCG
* *
216952980 AAATACCCTTATAAGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACCG
* *
216953007 AAATACTCCTATAGGGTAGAATTA-CT
1 AAATACCCCTATAGGGTAGAATTACCG
* *
216953033 AAATACCCCCTGTAAGGTAGAATTACCG
1 AAATA-CCCCTATAGGGTAGAATTACCG
* * *
216953061 AAATA-CCCTGTATGGTAGAATTA-CT
1 AAATACCCCTATAGGGTAGAATTACCG
* *
216953086 AAATA-CCCTATAAGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAATTACCG
* **
216953112 AAATACCGCTATAGGGTAGAATTACTA
1 AAATACCCCTATAGGGTAGAATTACCG
* *
216953139 AAATGCCCCTCTAGGGTAGAATTACCG
1 AAATACCCCTATAGGGTAGAATTACCG
* * * *
216953166 AAATACCCTTGTAGGGTAGAAATACCA
1 AAATACCCCTATAGGGTAGAATTACCG
*
216953193 AAATACCCCTGTAGGGTAG
1 AAATACCCCTATAGGGTAG
216953212 GACTATCGAT
Statistics
Matches: 264, Mismatches: 43, Indels: 13
0.82 0.13 0.04
Matches are distributed among these distances:
25 22 0.08
26 42 0.16
27 170 0.64
28 30 0.11
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAGAATTACCG
Found at i:216953163 original size:159 final size:161
Alignment explanation
Indices: 216952855--216953211 Score: 488
Period size: 159 Copynumber: 2.2 Consensus size: 161
216952845 CTCATATCTG
* * * *
216952855 TAGGCTAGCATTACTAAAATACCCCTATAAAGGTAGAATTACCGAAATACCTTGTAGGGTAGAAT
1 TAGGGTAGAATTACT-AAATACCCCTGT-AAGGTAGAATTACCGAAATACCCTGTAGGGTAGAAT
* *
216952920 TACTAAACATACCCCTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATA
64 TACTAAACATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATA
*
216952985 CCCTTATAAGGTAGAATTACCGAAATACTCC-TA
129 CCCCTATAAGGTAGAATTACCGAAATAC-CCTTA
*
216953018 TAGGGTAGAATTACTAAATACCCCCTGTAAGGTAGAATTACCGAAATACCCTGTATGGTAGAATT
1 TAGGGTAGAATTACTAAATA-CCCCTGTAAGGTAGAATTACCGAAATACCCTGTAGGGTAGAATT
* * *
216953083 ACT-AA-ATA-CCCTATAAGGTAGAATTACTGAAATACCGCTATAGGGTAGAATTACTAAAATGC
65 ACTAAACATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATAC
* * *
216953145 CCCTCTAGGGTAGAATTACCGAAATACCCTTG
130 CCCTATAAGGTAGAATTACCGAAATACCCTTA
* * *
216953177 TAGGGTAGAAATACCAAAATACCCCTGTAGGGTAG
1 TAGGGTAGAATTA-CTAAATACCCCTGTAAGGTAG
216953212 GACTATCGAT
Statistics
Matches: 174, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
158 2 0.01
159 99 0.57
160 9 0.05
161 2 0.01
162 43 0.25
163 19 0.11
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (161 bp):
TAGGGTAGAATTACTAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTGTAGGGTAGAATTA
CTAAACATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATACC
CCTATAAGGTAGAATTACCGAAATACCCTTA
Found at i:216960277 original size:24 final size:24
Alignment explanation
Indices: 216960245--216960451 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
216960235 TATCTCAAAT
*
216960245 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
216960269 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
216960293 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
216960317 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
216960341 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
216960365 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
216960389 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
216960413 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
216960437 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
216960452 ACATAATAAG
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:216968017 original size:24 final size:24
Alignment explanation
Indices: 216967985--216968191 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
216967975 TATCTCAAAT
*
216967985 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
216968009 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
216968033 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
216968057 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
216968081 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
216968105 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
216968129 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
216968153 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
216968177 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
216968192 ACATAATAAG
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:216975756 original size:24 final size:24
Alignment explanation
Indices: 216975724--216975930 Score: 324
Period size: 24 Copynumber: 8.6 Consensus size: 24
216975714 TATCTCAAAT
*
216975724 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
216975748 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
216975772 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
216975796 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
216975820 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
216975844 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* * *
216975868 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
216975892 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
216975916 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
216975931 ACATAATAAG
Statistics
Matches: 175, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 175 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:216977766 original size:44 final size:44
Alignment explanation
Indices: 216977710--216978185 Score: 584
Period size: 44 Copynumber: 10.9 Consensus size: 44
216977700 CTGTTATTTC
* * * *
216977710 CGATTTGCTCTCTGCCAACACTA-AGATGTCAAATCTGCTATGTT
1 CGATCTGCTCTCTGCCAATAC-AGAGATGCCAAATCTGCTATCTT
* ** *
216977754 CGATCCGCTCTCTGATAATACAGAAATGCCAAATCTGCTATCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* *
216977798 CGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* * ** *
216977842 CTATCTGCTCTCCGCCAATACAGAGACACCAAATGTGCTATCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* *
216977886 CGATCTGCTCTCCGCCAATACAGAGATG-CAAATCTGCTATTTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
*
216977929 CGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* * *
216977973 CGATCTGCTCT-TCGCCGATACAGAGATGTCAAATCTGTTATCTT
1 CGATCTGCTCTCT-GCCAATACAGAGATGCCAAATCTGCTATCTT
* * **
216978017 CGATCTGCCCTCTGACAATACAGAGACACCAAATCTGCTA-CTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* * * *
216978060 CGATCTGCCCTCTGACAATACAGAGACGCCAAATC-GACTACCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTG-CTATCTT
* * *
216978104 CGATCTGCTCTCCGCCAATACAGAGACGCCAAATCCGCTATCTT
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
* *
216978148 CGATCTGCTCTCCGCCAATATAGAGATGCCAAATCTGC
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGC
216978186 AGGATTTGCC
Statistics
Matches: 381, Mismatches: 44, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
42 1 0.00
43 81 0.21
44 297 0.78
45 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (44 bp):
CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTT
Found at i:216977964 original size:131 final size:132
Alignment explanation
Indices: 216977739--216978185 Score: 630
Period size: 131 Copynumber: 3.4 Consensus size: 132
216977729 ACTAAGATGT
* * * * *
216977739 CAAATCTGCTATGTTCGATCCGCTCTCTGATAATACAGAAATGCCAAATCTGCTATCTTCGATCT
1 CAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGCTATCTTCGATCT
* *
216977804 GCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCTATCTGCTCTCCGCCAATACAGAGAC
66 GCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGAC
*
216977869 AC
131 GC
* * *
216977871 CAAATGTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATG-CAAATCTGCTATTTTCGATCT
1 CAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGCTATCTTCGATCT
* * *
216977935 GCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTTCGCCGATACAGAGAT
66 GCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGAC
*
216978000 GT
131 GC
* * * **
216978002 CAAATCTGTTATCTTCGATCTGCCCTCTGACAATACAGAGACACCAAATCTGCTA-CTTCGATCT
1 CAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGCTATCTTCGATCT
* * *
216978066 GCCCTCTGACAATACAGAGACGCCAAATC-GACTACCTTCGATCTGCTCTCCGCCAATACAGAGA
66 GCTCTCTGCCAATACAGAGACGCCAAATCTG-CTATCTTCGATCTGCTCTCCGCCAATACAGAGA
216978130 CGC
130 CGC
* * *
216978133 CAAATCCGCTATCTTCGATCTGCTCTCCGCCAATATAGAGATGCCAAATCTGC
1 CAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGC
216978186 AGGATTTGCC
Statistics
Matches: 275, Mismatches: 38, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
130 1 0.00
131 227 0.83
132 47 0.17
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.27
Consensus pattern (132 bp):
CAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGCTATCTTCGATCT
GCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGAC
GC
Found at i:216978038 original size:175 final size:175
Alignment explanation
Indices: 216977710--216978185 Score: 652
Period size: 175 Copynumber: 2.7 Consensus size: 175
216977700 CTGTTATTTC
* * * * * **
216977710 CGATTTGCTCTCTGCCAACACTA-AGATGTCAAATCTGCTATGTTCGATCCGCTCTCTGATAATA
1 CGATCTGCTCTCTGCCAATAC-AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATA
* * *
216977774 CAGAAATGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTAT
65 CAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTAT
* * * *
216977839 CTTCTATCTGCTCTCCGCCAATACAGAGACACCAAATGTGCTATCTT
130 CTTCGATCTGCCCTCCGACAATACAGAGACACCAAATCTGCTA-CTT
* *
216977886 CGATCTGCTCTCCGCCAATACAGAGATG-CAAATCTGCTATTTTCGATCTGCTCTCTGCCAATAC
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATAC
* * * *
216977950 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTTCGCCGATACAGAGATGTCAAATCTGTTATC
66 AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTATC
*
216978015 TTCGATCTGCCCTCTGACAATACAGAGACACCAAATCTGCTACTT
131 TTCGATCTGCCCTCCGACAATACAGAGACACCAAATCTGCTACTT
* * * * *
216978060 CGATCTGCCCTCTGACAATACAGAGACGCCAAATC-GACTACCTTCGATCTGCTCTCCGCCAATA
1 CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTG-CTATCTTCGATCTGCTCTCTGCCAATA
* *
216978124 CAGAGACGCCAAATCCGCTATCTTCGATCTGCTCTCCGCCAATATAGAGATGCCAAATCTGC
65 CAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGC
216978186 AGGATTTGCC
Statistics
Matches: 265, Mismatches: 32, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
174 28 0.11
175 214 0.81
176 23 0.09
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (175 bp):
CGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAATAC
AGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTATC
TTCGATCTGCCCTCCGACAATACAGAGACACCAAATCTGCTACTT
Found at i:216982420 original size:40 final size:40
Alignment explanation
Indices: 216982293--216982422 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
216982283 ATGCTGGAAA
* *
216982293 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
216982333 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
216982373 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
216982413 TTATATCCGG
1 TTATATCCGG
216982423 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:216984426 original size:40 final size:40
Alignment explanation
Indices: 216984381--216984547 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
216984371 CGGAATACAA
216984381 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
216984421 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
216984461 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * * * *
216984501 CCGGATATAATTTCCAGCA-TAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
216984540 CCGGATAT
1 CCGGATAT
216984548 CATTCAATTG
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 25 0.24
40 80 0.76
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:216992466 original size:40 final size:40
Alignment explanation
Indices: 216992421--216992587 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
216992411 CGGAATACAA
216992421 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
216992461 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
216992501 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * * * *
216992541 CCGGATATAATTTCCAGCA-TAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
216992580 CCGGATAT
1 CCGGATAT
216992588 CATTCAATTG
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 25 0.24
40 80 0.76
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:216996529 original size:40 final size:40
Alignment explanation
Indices: 216996474--216996695 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
216996464 TATTCGGATG
*
216996474 ATATCCGGGCTAAGTCCCGAAGGCCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
216996514 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
216996554 ATATCCGGGCTAAGTCCCGAAGGCATTTATGTTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
216996594 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
216996634 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
216996674 ATATCC-GGCTAACTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
216996696 TACTTGGGTT
Statistics
Matches: 170, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.08
40 154 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:217004550 original size:40 final size:40
Alignment explanation
Indices: 217004429--217004645 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
217004419 TATTCGGATG
217004429 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
217004468 ATATCCGGGCTAAGTCCCGAAGGCA-TT-TGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
217004506 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
217004546 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
217004586 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
217004626 ATATCC-GGCTAA-T-CCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
217004646 TACTTGGTTT
Statistics
Matches: 170, Mismatches: 4, Indels: 10
0.92 0.02 0.05
Matches are distributed among these distances:
37 7 0.04
38 36 0.21
39 25 0.15
40 100 0.59
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:217009783 original size:40 final size:39
Alignment explanation
Indices: 217009738--217009903 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
217009728 CGGAATATAA
217009738 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
217009778 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
217009817 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
217009857 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
217009896 CCGGATAT
1 CCGGATAT
217009904 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:217009860 original size:79 final size:79
Alignment explanation
Indices: 217009754--217009903 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
217009744 ATAATCACGT
*
217009754 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
217009817 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
217009833 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
217009898 GGATAT
66 GGATAT
217009904 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:217017789 original size:40 final size:40
Alignment explanation
Indices: 217017744--217017910 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
217017734 CGGAATATAA
217017744 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
217017784 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
217017824 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
217017864 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
217017903 CCGGATAT
1 CCGGATAT
217017911 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:217017894 original size:80 final size:79
Alignment explanation
Indices: 217017760--217017910 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
217017750 ATAATCACGT
*
217017760 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
217017825 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
217017840 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
217017903 CCGGATAT
64 CCGGATAT
217017911 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:217019167 original size:56 final size:53
Alignment explanation
Indices: 217019104--217019212 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
217019094 CCCCCTTTTC
217019104 CCTTAGTA-ATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTCTTTTCTTT
1 CCTTAGTACA-TTCGGCCAAGAAGATGGAG-AAGGATGAAC--ATTTTT-TTTTCTTT
***
217019160 CCTTAGTACATTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTCTTT
1 CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTCTTT
217019213 TTTTTTTTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 6 0.12
56 30 0.62
57 4 0.08
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (53 bp):
CCTTAGTACATTCGGCCAAGAAGATGGAGAAGGATGAACATTTTTTTTTCTTT
Found at i:217020391 original size:19 final size:19
Alignment explanation
Indices: 217020341--217020384 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
217020331 TGGAGCTTCA
217020341 GTCAAAT-AGTTTTCAATT
1 GTCAAATAAGTTTTCAATT
217020359 GTCAAATAAGTTTTCAATT
1 GTCAAATAAGTTTTCAATT
217020378 GATCAAA
1 G-TCAAA
217020385 ACTTTTTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 7 0.29
19 12 0.50
20 5 0.21
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (19 bp):
GTCAAATAAGTTTTCAATT
Found at i:217024678 original size:80 final size:81
Alignment explanation
Indices: 217024556--217024772 Score: 300
Period size: 80 Copynumber: 2.7 Consensus size: 81
217024546 ACCCAAGTAT
* * * *
217024556 CTTCGGGATTTAG-CCGGCTATCGCAACTC-GCACAAATGCCTTCGGGTCTTAGTCCGGATATAG
1 CTTCAGGACTTAGCCCGGATATAGCAACTCAGCACAAATGCCTTCGGGTCTTAGTCCGGATATAG
217024619 TCACTAGCATAAATGC
66 TCACTAGCATAAATGC
* * * * *
217024635 CTTCGGGACTTAGCCCGGATATAGTC-GCT-AGCACAAATGCCTTCGGGACTTAGCCCGGGTATA
1 CTTCAGGACTTAGCCCGGATATAG-CAACTCAGCACAAATGCCTTCGGGTCTTAGTCCGGATATA
217024698 GTCACTAGCATAAATGC
65 GTCACTAGCATAAATGC
*
217024715 CTTCAGGACTTAGCCCGGATATAGCAACTCA-CACAAATGCCTTCGGATCTTAGTCCGG
1 CTTCAGGACTTAGCCCGGATATAGCAACTCAGCACAAATGCCTTCGGGTCTTAGTCCGG
217024773 TTATCATCCG
Statistics
Matches: 121, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
79 13 0.11
80 106 0.88
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CTTCAGGACTTAGCCCGGATATAGCAACTCAGCACAAATGCCTTCGGGTCTTAGTCCGGATATAG
TCACTAGCATAAATGC
Found at i:217024767 original size:40 final size:40
Alignment explanation
Indices: 217024585--217024760 Score: 257
Period size: 40 Copynumber: 4.4 Consensus size: 40
217024575 ATCGCAACTC
* *
217024585 GCACAAATGCCTTCGGGTCTTAGTCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
217024625 GCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
*
217024665 GCACAAATGCCTTCGGGACTTAGCCCGGGTATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
217024705 GCATAAATGCCTTCAGGACTTAGCCCGGATATAG-CAACTCA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-ACT-A
217024746 -CACAAATGCCTTCGG
1 GCACAAATGCCTTCGG
217024761 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 120 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
Found at i:217027466 original size:46 final size:46
Alignment explanation
Indices: 217027391--217027568 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
217027381 TGTAACCCGC
* * *
217027391 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCAT
* * *
217027437 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGCATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG--T--TTGCAT
* * * * **
217027487 -C-TCA-CGAACTTGGACTCAACTGAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCAT
217027530 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
217027569 CCCAAATATC
Statistics
Matches: 105, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 3 0.03
46 61 0.58
47 26 0.25
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCAT
Found at i:217027513 original size:93 final size:93
Alignment explanation
Indices: 217027398--217027570 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
217027388 CGCCCATAAG
*** *
217027398 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTTGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
217027463 ACGAGTTCGCATGCCTAGTTACATCTCA
66 ACGAGTTCGCATGCCTAGTTACATCTCA
* * *
217027491 CGAACTTGGACTCAACTGAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
*
217027556 ACGAGTTCGGATGCC
66 ACGAGTTCGCATGCC
217027571 CAAATATCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGCATGCCTAGTTACATCTCA
Found at i:217027585 original size:46 final size:47
Alignment explanation
Indices: 217027442--217027585 Score: 113
Period size: 46 Copynumber: 3.1 Consensus size: 47
217027432 TGCATCCATG
* * * *
217027442 AGTGAACTCGGACTCAACTCAACGAGTTCGCATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATC--CTA
* * * *
217027490 A-CGAACTTGGACTCAACTGAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATT--ATCC-TA
*
217027535 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
217027581 AGTGA
1 AGTGA
217027586 CATGTCACTT
Statistics
Matches: 75, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 3 0.04
46 33 0.44
47 27 0.36
48 5 0.07
50 3 0.04
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (47 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCTA
Found at i:217029986 original size:15 final size:15
Alignment explanation
Indices: 217029960--217030015 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
217029950 CAAGGAAACC
217029960 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
217029975 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
217029990 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
217030005 GAATAAAGAAA
1 GAATAAAGAAA
217030016 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:217032012 original size:29 final size:29
Alignment explanation
Indices: 217031980--217032111 Score: 192
Period size: 29 Copynumber: 4.6 Consensus size: 29
217031970 GTGACGAGAT
*
217031980 TGGCACTAAGTGTCCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
217032009 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
217032038 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
217032067 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
217032096 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
217032112 AGTTCGGAGG
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:217036775 original size:108 final size:110
Alignment explanation
Indices: 217036631--217036830 Score: 289
Period size: 108 Copynumber: 1.8 Consensus size: 110
217036621 ATCCTTTTGA
* *
217036631 AACTTACCATTGCCATGTCTAGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTAGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
217036694 -TGCCATGCCTCGGCATAGTCTTACATGGGACCTTTGCCTTATATT
65 TTGCCATACCTCGGCATAGTCTTACATGGGACCTTTGCCTTATATT
* * *
217036739 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTAGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
* * *
217036804 TTCCATACCTTGGCATGGTCTTACATG
66 TGCCATACCTCGGCATAGTCTTACATG
217036831 ATATCCTTAA
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.61
109 7 0.09
110 23 0.29
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTAGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATACCTCGGCATAGTCTTACATGGGACCTTTGCCTTATATT
Found at i:217036831 original size:55 final size:53
Alignment explanation
Indices: 217036629--217036838 Score: 208
Period size: 55 Copynumber: 3.9 Consensus size: 53
217036619 GTATCCTTTT
* * * * *
217036629 GAAACTTACCATTGCCATGTCTAGACATGGTCTTACATGGTATCCTTGCCTTA
1 GAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
* * * **
217036682 TG-AACTCACCAATGCCATGCCTCGGCATAGTCTTACATGGGA-CCTTTGCCTTA
1 -GAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTA
* * * *
217036735 TATTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA
1 GA--AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
* *
217036790 GAAACCTTACCAATTTCCATACCTTGGCATGGTCTTACATGATATCCTT
1 GAAA-CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
217036839 AAACCCTAAT
Statistics
Matches: 127, Mismatches: 22, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 8 0.06
55 72 0.57
56 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (53 bp):
GAAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTA
Found at i:217043301 original size:22 final size:22
Alignment explanation
Indices: 217043276--217043318 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
217043266 CTAAGACAAC
*
217043276 AGGACGGCTCAACGCCGTAGAT
1 AGGACAGCTCAACGCCGTAGAT
217043298 AGGACAGCTCAACGCCGTAGA
1 AGGACAGCTCAACGCCGTAGA
217043319 CAAGATAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.28, G:0.30, T:0.12
Consensus pattern (22 bp):
AGGACAGCTCAACGCCGTAGAT
Found at i:217043330 original size:22 final size:22
Alignment explanation
Indices: 217043283--217043332 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
217043273 AACAGGACGG
* * *
217043283 CTCAACGCCGTAGATAGGACAG
1 CTCAACGCCGTAGACAAGACAA
*
217043305 CTCAACGCCGTAGACAAGATAA
1 CTCAACGCCGTAGACAAGACAA
217043327 CTCAAC
1 CTCAAC
217043333 ATCGTGGATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.36, C:0.30, G:0.20, T:0.14
Consensus pattern (22 bp):
CTCAACGCCGTAGACAAGACAA
Found at i:217045401 original size:20 final size:19
Alignment explanation
Indices: 217045367--217045451 Score: 63
Period size: 20 Copynumber: 4.5 Consensus size: 19
217045357 TTCTCTTTTC
*
217045367 TTTCTTTTGCTATTT-TTGG
1 TTTCTTTTTCTATTTCTT-G
*
217045386 TTTCTTTTTCTCATTTCTTT
1 TTTCTTTTTCT-ATTTCTTG
*
217045406 TTTCTTTTTCATTTTTCATT-
1 TTTCTTTTTC-TATTTC-TTG
*
217045426 TTTCTTTTTC-A-TT-TTC
1 TTTCTTTTTCTATTTCTTG
217045442 TTTCTTTTTC
1 TTTCTTTTTC
217045452 AACTTCATTC
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
15 2 0.04
16 10 0.18
17 2 0.04
19 10 0.18
20 28 0.49
21 5 0.09
ACGTcount: A:0.06, C:0.16, G:0.04, T:0.74
Consensus pattern (19 bp):
TTTCTTTTTCTATTTCTTG
Found at i:217045415 original size:13 final size:12
Alignment explanation
Indices: 217045304--217045444 Score: 67
Period size: 13 Copynumber: 11.2 Consensus size: 12
217045294 GCAATCAAAC
*
217045304 TTTTCTTTTT-A
1 TTTTCTTTTTCT
* *
217045315 TTTTCATTTTCA
1 TTTTCTTTTTCT
*
217045327 TTTTCATTTTCT
1 TTTTCTTTTTCT
217045339 TATTT-TTCTTCTCT
1 T-TTTCTT-TT-TCT
217045353 CGTTTTCTCTTTTC-
1 --TTTTCT-TTTTCT
*
217045367 -TTTCTTTTGCT
1 TTTTCTTTTTCT
*
217045378 ATTTT-TGGTTTCT
1 -TTTTCT-TTTTCT
*
217045391 TTTTCTCATTTCTT
1 TTTTCT-TTTTC-T
217045405 TTTTCTTTTTCAT
1 TTTTCTTTTTC-T
217045418 TTTTCATTTTTCT
1 TTTTC-TTTTTCT
*
217045431 TTTTCATTTTCT
1 TTTTCTTTTTCT
217045443 TT
1 TT
217045445 CTTTTTCAAC
Statistics
Matches: 104, Mismatches: 11, Indels: 29
0.72 0.08 0.20
Matches are distributed among these distances:
10 4 0.04
11 14 0.13
12 27 0.26
13 33 0.32
14 16 0.15
15 5 0.05
16 4 0.04
17 1 0.01
ACGTcount: A:0.07, C:0.17, G:0.03, T:0.73
Consensus pattern (12 bp):
TTTTCTTTTTCT
Found at i:217045440 original size:7 final size:7
Alignment explanation
Indices: 217045399--217045440 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
217045389 CTTTTTCTCA
*
217045399 TTTCTTT
1 TTTCATT
217045406 TTTC-TT
1 TTTCATT
217045412 TTTCATT
1 TTTCATT
217045419 TTTCATT
1 TTTCATT
217045426 TTTC-TT
1 TTTCATT
217045432 TTTCATT
1 TTTCATT
217045439 TT
1 TT
217045441 CTTTCTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 12 0.36
7 21 0.64
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTCATT
Found at i:217045451 original size:6 final size:6
Alignment explanation
Indices: 217045304--217045444 Score: 67
Period size: 6 Copynumber: 22.3 Consensus size: 6
217045294 GCAATCAAAC
* * * *
217045304 TTTTCT TTTT-A TTTTCA TTTTCA TTTTCA TTTTCT TATTT-T TCTTCTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT T-TTTCT T-TT-TCT
* * *
217045353 CGTTTTCT CTTTTC- -TTTCT TTTGCT ATTTT-T GGTTTCT TTTTCT CATTTCTT
1 --TTTTCT -TTTTCT TTTTCT TTTTCT -TTTTCT -TTTTCT TTTTCT -TTTTC-T
*
217045405 TTTTCT TTTTCAT TTTTCAT TTTTCT TTTTCA TTTTCT TT
1 TTTTCT TTTTC-T TTTTC-T TTTTCT TTTTCT TTTTCT TT
217045445 CTTTTTCAAC
Statistics
Matches: 109, Mismatches: 13, Indels: 26
0.74 0.09 0.18
Matches are distributed among these distances:
4 4 0.04
5 4 0.04
6 59 0.54
7 34 0.31
8 5 0.05
9 2 0.02
10 1 0.01
ACGTcount: A:0.07, C:0.17, G:0.03, T:0.73
Consensus pattern (6 bp):
TTTTCT
Found at i:217045462 original size:16 final size:16
Alignment explanation
Indices: 217045427--217045465 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
217045417 TTTTTCATTT
** *
217045427 TTCTTTTTCATTTTCT
1 TTCTTTTTCAACTTCA
217045443 TTCTTTTTCAACTTCA
1 TTCTTTTTCAACTTCA
217045459 TTCTTTT
1 TTCTTTT
217045466 ATTTTCCTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.10, C:0.21, G:0.00, T:0.69
Consensus pattern (16 bp):
TTCTTTTTCAACTTCA
Found at i:217045464 original size:20 final size:19
Alignment explanation
Indices: 217045406--217045464 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 19
217045396 TCATTTCTTT
*
217045406 TTTCTTTTTCATTTTTCATT-
1 TTTCTTTTTCA--ATTCATTC
217045426 TTTCTTTTTC-ATT--TTC
1 TTTCTTTTTCAATTCATTC
217045442 TTTCTTTTTCAACTTCATTC
1 TTTCTTTTTCAA-TTCATTC
217045462 TTT
1 TTT
217045465 TATTTTCCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
15 2 0.06
16 10 0.30
17 3 0.09
18 2 0.06
20 16 0.48
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTCTTTTTCAATTCATTC
Found at i:217049459 original size:14 final size:13
Alignment explanation
Indices: 217049440--217049469 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
217049430 CCCACCTTTC
217049440 TTTCTTTCTTACTT
1 TTTCTTTCTT-CTT
217049454 TTTCTTTCTTCTT
1 TTTCTTTCTTCTT
217049467 TTT
1 TTT
217049470 AATTTGCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTCTTTCTTCTT
Found at i:217049883 original size:16 final size:16
Alignment explanation
Indices: 217049862--217049911 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
217049852 ATTATAGGGT
217049862 CATTACATCTACATAC
1 CATTACATCTACATAC
217049878 CATTACATCTACATAC
1 CATTACATCTACATAC
* * *
217049894 TAGTACATCTAAATAC
1 CATTACATCTACATAC
217049910 CA
1 CA
217049912 CGTCCTATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.40, C:0.28, G:0.02, T:0.30
Consensus pattern (16 bp):
CATTACATCTACATAC
Found at i:217051960 original size:29 final size:29
Alignment explanation
Indices: 217051927--217052028 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
217051917 TGACGAGATC
217051927 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
217051956 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
217051985 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
217052014 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
217052029 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:217059773 original size:29 final size:29
Alignment explanation
Indices: 217059740--217059821 Score: 146
Period size: 29 Copynumber: 2.8 Consensus size: 29
217059730 TGACGAGATC
217059740 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
217059769 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
217059798 GGCACTAAGTGTGCAAGCTGGAAA
1 GGCACTAAGTGTGCGTGCTGGAAA
217059822 ATACACTGGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:217065251 original size:29 final size:29
Alignment explanation
Indices: 217065189--217065291 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
217065179 GTGACGAGAT
* * *
217065189 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
217065218 AGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
217065247 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
217065276 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
217065292 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 3 0.05
29 57 0.95
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:217072388 original size:40 final size:39
Alignment explanation
Indices: 217072343--217072550 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
217072333 CGGAATACAA
*
217072343 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
217072383 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
217072423 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
217072463 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
217072503 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
217072543 CCGGATAT
1 CCGGATAT
217072551 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:217072483 original size:80 final size:80
Alignment explanation
Indices: 217072343--217072549 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
217072333 CGGAATACAA
* * *
217072343 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
217072407 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
217072423 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
217072487 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
217072503 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
217072550 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:217080437 original size:40 final size:39
Alignment explanation
Indices: 217080392--217080599 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
217080382 CGGAATACAA
*
217080392 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
217080432 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
217080472 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
217080512 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
217080552 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
217080592 CCGGATAT
1 CCGGATAT
217080600 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:217080532 original size:80 final size:80
Alignment explanation
Indices: 217080392--217080598 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
217080382 CGGAATACAA
* * *
217080392 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
217080456 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
217080472 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
217080536 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
217080552 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
217080599 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:217087382 original size:30 final size:30
Alignment explanation
Indices: 217087348--217087408 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
217087338 TCCTTAACTC
217087348 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
217087378 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
217087408 A
1 A
217087409 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:217094936 original size:30 final size:30
Alignment explanation
Indices: 217094900--217095059 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
217094890 GACAAGATTG
* * * * *
217094900 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
217094930 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
217094958 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
217094987 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
217095017 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
217095046 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
217095060 GATTCACATA
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:217095027 original size:59 final size:57
Alignment explanation
Indices: 217094900--217095059 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
217094890 GACAAGATTG
* * * * * *
217094900 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
217094958 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
217095017 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
217095060 GATTCACATA
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:217098581 original size:40 final size:40
Alignment explanation
Indices: 217098537--217098866 Score: 552
Period size: 40 Copynumber: 8.2 Consensus size: 40
217098527 GGGCTAAATC
217098537 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
217098577 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
*
217098617 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
217098657 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* *
217098697 CCGAAGAGCATTCGTGCTAATGATGTATCCAGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* *
217098737 CCGAAGAGCATTCGTGCTAATGATGTATCCAGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* * * *
217098777 CCGAAGAGCATTCGTGCTAGTAATGCAACCGGACTAAGTC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* * *
217098817 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
217098857 CCGAAGAGCA
1 CCGAAGAGCA
217098867 ATCATGCTGG
Statistics
Matches: 275, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 275 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
Found at i:217102877 original size:29 final size:29
Alignment explanation
Indices: 217102844--217102974 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
217102834 TGACGAGATC
*
217102844 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
217102873 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
217102902 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
217102931 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
217102960 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
217102975 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:217106639 original size:29 final size:29
Alignment explanation
Indices: 217106606--217106679 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
217106596 GTGACGAGAT
217106606 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
217106635 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
217106664 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
217106680 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:217106695 original size:29 final size:29
Alignment explanation
Indices: 217106663--217106738 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
217106653 CTGGAAATAT
* *
217106663 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
217106692 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
217106721 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
217106739 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:217106706 original size:58 final size:58
Alignment explanation
Indices: 217106606--217106738 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
217106596 GTGACGAGAT
* * * * * *
217106606 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
217106664 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
217106722 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
217106739 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:217114510 original size:29 final size:29
Alignment explanation
Indices: 217114477--217114550 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
217114467 GTGACGAGAT
217114477 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
217114506 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
217114535 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
217114551 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:217114566 original size:29 final size:29
Alignment explanation
Indices: 217114534--217114607 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 29
217114524 CTGGAAATAT
* *
217114534 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * *
217114563 ATGGCACT--GTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
217114590 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
217114608 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
27 22 0.59
29 15 0.41
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:217118445 original size:93 final size:93
Alignment explanation
Indices: 217118338--217118508 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
217118328 GCCCCTAAGT
* *
217118338 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
217118403 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
217118431 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
217118496 CGAGTTCGGATGC
66 CGAGTTCGGATGC
217118509 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:217118505 original size:46 final size:46
Alignment explanation
Indices: 217118333--217118505 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
217118323 AACCCGCCCC
* * *
217118333 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
217118379 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
217118427 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
217118472 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
217118506 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:217118962 original size:30 final size:30
Alignment explanation
Indices: 217118928--217118987 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
217118918 ATTTAATACG
217118928 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
217118958 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
217118988 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:217126015 original size:47 final size:47
Alignment explanation
Indices: 217125901--217126070 Score: 169
Period size: 45 Copynumber: 3.7 Consensus size: 47
217125891 CCCCCTAAGT
* * * *
217125901 GAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCC--AAGC
217125947 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
217125994 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
217126039 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
217126071 TCAACCATCC
Statistics
Matches: 105, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
45 29 0.28
46 27 0.26
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:217126070 original size:92 final size:93
Alignment explanation
Indices: 217125901--217126070 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
217125891 CCCCCTAAGT
* *
217125901 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
217125966 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
217125994 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
217126058 CGAGTTCGGATGC
66 CGAGTTCGGATGC
217126071 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 35 0.47
93 39 0.53
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:217126522 original size:30 final size:30
Alignment explanation
Indices: 217126488--217126547 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
217126478 ATTTAATACG
217126488 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
217126518 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
217126548 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:217133522 original size:40 final size:40
Alignment explanation
Indices: 217133437--217133587 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
217133427 AATTGAATGA
* * *
217133437 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
217133477 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
217133518 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
217133557 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
217133588 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:217133601 original size:40 final size:40
Alignment explanation
Indices: 217133473--217133603 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
217133463 TATGCTGGAA
* * *
217133473 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
217133513 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
217133553 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
217133593 ATTATATCCGG
1 ATTATATCCGG
217133604 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:217141491 original size:40 final size:40
Alignment explanation
Indices: 217141425--217141591 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
217141415 AAATTGAATG
* * *
217141425 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
217141464 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
217141504 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
217141544 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
217141584 ATATCCGG
1 ATATCCGG
217141592 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:217147608 original size:50 final size:50
Alignment explanation
Indices: 217147533--217147758 Score: 226
Period size: 50 Copynumber: 4.5 Consensus size: 50
217147523 GTGAGACACG
* *
217147533 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* ** ** *
217147583 TGTGTAGTACTAAGTGCAGGCTACTATGCATACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCACA
** * * *
217147634 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGTCACA
* * * * *
217147684 TGCGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
217147733 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
217147759 TACGTATCAG
Statistics
Matches: 145, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 32 0.22
50 70 0.48
51 34 0.23
52 3 0.02
53 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
Found at i:217149830 original size:18 final size:17
Alignment explanation
Indices: 217149803--217149868 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 17
217149793 GCTTCATACA
217149803 CATAGTATCATCTACCG
1 CATAGTATCATCTACCG
*
217149820 CATAGGTATCAAGCTTCATA-CA
1 CATA-GTATC-A---TC-TACCG
217149842 CATAGTATCATCTACCG
1 CATAGTATCATCTACCG
217149859 CATAGGTATC
1 CATA-GTATC
217149869 GTACATACCT
Statistics
Matches: 39, Mismatches: 2, Indels: 15
0.70 0.04 0.27
Matches are distributed among these distances:
16 2 0.05
17 11 0.28
18 10 0.26
19 1 0.03
20 1 0.03
21 5 0.13
22 7 0.18
23 2 0.05
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.29
Consensus pattern (17 bp):
CATAGTATCATCTACCG
Found at i:217149832 original size:39 final size:39
Alignment explanation
Indices: 217149788--217149868 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
217149778 ACATGAATTC
217149788 ATCAAGCTTCATACACATAGTATCATCTACCGCATAGGT
1 ATCAAGCTTCATACACATAGTATCATCTACCGCATAGGT
217149827 ATCAAGCTTCATACACATAGTATCATCTACCGCATAGGT
1 ATCAAGCTTCATACACATAGTATCATCTACCGCATAGGT
217149866 ATC
1 ATC
217149869 GTACATACCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.28
Consensus pattern (39 bp):
ATCAAGCTTCATACACATAGTATCATCTACCGCATAGGT
Found at i:217149850 original size:21 final size:21
Alignment explanation
Indices: 217149788--217149851 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
217149778 ACATGAATTC
217149788 ATCAAGCTTCATACACATAGT
1 ATCAAGCTTCATACACATAGT
*
217149809 ATC-A---TC-TACCGCATAGGT
1 ATCAAGCTTCATA-CACATA-GT
217149827 ATCAAGCTTCATACACATAGT
1 ATCAAGCTTCATACACATAGT
217149848 ATCA
1 ATCA
217149852 TCTACCGCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 14
0.68 0.04 0.28
Matches are distributed among these distances:
16 2 0.06
17 7 0.21
18 5 0.15
19 1 0.03
20 1 0.03
21 9 0.26
22 7 0.21
23 2 0.06
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (21 bp):
ATCAAGCTTCATACACATAGT
Found at i:217155693 original size:43 final size:43
Alignment explanation
Indices: 217155611--217155693 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
217155601 TATCTAGGAT
*** *
217155611 ATGGCATCGATATGAGATTTCATGGAAGACCATAGCTGGGCTA
1 ATGGCATCGATATGAGACCCCATGGAAAACCATAGCTGGGCTA
* * *
217155654 ATGGCATCGATATGAGACCCCATGTAAAATCATATCTGGG
1 ATGGCATCGATATGAGACCCCATGGAAAACCATAGCTGGG
217155694 ATATCGCATT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (43 bp):
ATGGCATCGATATGAGACCCCATGGAAAACCATAGCTGGGCTA
Found at i:217163861 original size:40 final size:40
Alignment explanation
Indices: 217163802--217164009 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
217163792 CAATTGAATG
* * * *
217163802 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
217163842 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
217163882 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
217163922 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
217163962 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
217164002 ATATCCGG
1 ATATCCGG
217164010 TTGTGTTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:217163940 original size:80 final size:80
Alignment explanation
Indices: 217163804--217164009 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
217163794 ATTGAATGAT
* * ** * * *
217163804 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
217163868 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
217163884 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
217163949 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
217163964 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
217164010 TTGTGTTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:217166458 original size:43 final size:42
Alignment explanation
Indices: 217166371--217166482 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 42
217166361 TGGGATTACG
* * * **
217166371 TGTAAGACCATATTTGGGATATGACATTGATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
* *
217166413 TGTAAGACCATAGCTGGGCTAATGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGAT-ATGGCATCGATATGAGATCCCA
* *
217166456 TGTAAAATCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
217166483 TGGTATGATA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
Found at i:217169430 original size:46 final size:46
Alignment explanation
Indices: 217169380--217169504 Score: 205
Period size: 46 Copynumber: 2.7 Consensus size: 46
217169370 TGAGCATCCC
* *
217169380 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
*
217169426 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
* *
217169472 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
217169505 GCGAGTTACA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
Found at i:217173036 original size:30 final size:28
Alignment explanation
Indices: 217173000--217173098 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
217172990 GACAAGATTG
* *
217173000 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
217173030 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
217173058 GCACTAAGTGTGCGAGCTGAA-TATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
217173085 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
217173099 GACTCACTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 20 0.32
28 24 0.39
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:217173069 original size:28 final size:28
Alignment explanation
Indices: 217173000--217173098 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
217172990 GACAAGATTG
* * * *
217173000 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
217173030 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
217173058 GCACTAAGTGTGCGAG-CTGAATATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
217173085 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
217173099 GACTCACTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:217180817 original size:30 final size:28
Alignment explanation
Indices: 217180781--217180879 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
217180771 GACAAGATTG
* *
217180781 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
217180811 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
217180839 GCACTAAGTGTGCGAGCTGAA-TATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
217180866 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
217180880 GACTCACTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 20 0.32
28 24 0.39
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:217180850 original size:28 final size:28
Alignment explanation
Indices: 217180781--217180879 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
217180771 GACAAGATTG
* * * *
217180781 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
217180811 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
217180839 GCACTAAGTGTGCGAG-CTGAATATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
217180866 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
217180880 GACTCACTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:217188603 original size:30 final size:28
Alignment explanation
Indices: 217188567--217188665 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
217188557 GACAAGATTG
* *
217188567 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
217188597 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
217188625 GCACTAAGTGTGCGAGCTGAA-TATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
217188652 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
217188666 GACTCACTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 20 0.32
28 24 0.39
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:217188636 original size:28 final size:28
Alignment explanation
Indices: 217188567--217188665 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
217188557 GACAAGATTG
* * * *
217188567 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
217188597 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
217188625 GCACTAAGTGTGCGAG-CTGAATATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
217188652 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
217188666 GACTCACTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:217196341 original size:30 final size:28
Alignment explanation
Indices: 217196305--217196403 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
217196295 GACAAGATTG
* *
217196305 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
217196335 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* * *
217196363 GCACTAAGTGTGCGAGCTGAA-TATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
217196390 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
217196404 GACTCACTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 20 0.32
28 24 0.39
30 18 0.29
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Done.