Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 69 of 770
Found at i:20277606 original size:81 final size:81
Alignment explanation
Indices: 20277379--20277611 Score: 215
Period size: 81 Copynumber: 2.9 Consensus size: 81
20277369 TACCCTATAG
* * * * * ***
20277379 GGGTATTTTGAT-ATTTTACAAA-TCAAGAGTATTTT-GATAATTTCACAAATCAGGGGTATTTT
1 GGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTTAG-TAATTTTACAAACCATGGGTAAAAT
* * *
20277441 GGTAATTTTAC-AAGCCA
64 GGTAATTTTACTGATCGA
* ***
20277458 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAACCATGGGTATTTTG
1 -GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAACCATGGGTAAAATG
20277523 GTAATTTTACTGATCGA
65 GTAATTTTACTGATCGA
** ** *
20277540 GGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTAGTAATTTTGTAAATCGA-GGGTAAAATG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAA-CCATGGGTAAAATG
20277604 GTAATTTT
65 GTAATTTT
20277612 GTAAATCGAG
Statistics
Matches: 130, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
80 11 0.08
81 112 0.86
82 7 0.05
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAACCATGGGTAAAATGG
TAATTTTACTGATCGA
Found at i:20277707 original size:54 final size:54
Alignment explanation
Indices: 20277577--20277920 Score: 492
Period size: 54 Copynumber: 6.4 Consensus size: 54
20277567 GGGTATTTTA
* * *
20277577 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
20277631 ATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
**
20277685 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATT
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
* *
20277739 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
20277793 GTAATTTTGTAAATCGAGGGTAAAATGGTAAGTT-TGCAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAA-TTCTGTAAATCGAGGGTAAAACG
* * *
20277847 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
20277901 GTAATTTTACAAATTGAGGG
1 GTAATTCTATAAATCGAGGG
20277921 CATTTCAGTA
Statistics
Matches: 263, Mismatches: 25, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
53 2 0.01
54 259 0.98
55 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:20285320 original size:22 final size:22
Alignment explanation
Indices: 20285295--20285339 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
20285285 TTCATACGAG
20285295 AATGCCAAAATGTATAAAGAAA
1 AATGCCAAAATGTATAAAGAAA
20285317 AATGCCAAAATGTATAAAGAAA
1 AATGCCAAAATGTATAAAGAAA
20285339 A
1 A
20285340 GTTTAAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.18
Consensus pattern (22 bp):
AATGCCAAAATGTATAAAGAAA
Found at i:20293089 original size:21 final size:20
Alignment explanation
Indices: 20293065--20293104 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
20293055 ATGTTCAAGT
20293065 TCCACACGGGCGTGTTGCCCA
1 TCCACACGGGCGTG-TGCCCA
*
20293086 TCCATACGGGCGTGTGCCC
1 TCCACACGGGCGTGTGCCC
20293105 TATTTCAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.12, C:0.38, G:0.30, T:0.20
Consensus pattern (20 bp):
TCCACACGGGCGTGTGCCCA
Found at i:20304115 original size:79 final size:79
Alignment explanation
Indices: 20303975--20304128 Score: 195
Period size: 79 Copynumber: 1.9 Consensus size: 79
20303965 TGTGAATGAA
* **
20303975 TGTGCGAATTGTGATATTCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATATCCGGGCTAA
20304040 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
20304053 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAAT-CGGGCT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCAT-ATCCGGGCT
*
20304117 ACGTCCCGAAGG
64 AAGTCCCGAAGG
20304129 TGTTTTGAAC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
78 24 0.38
79 30 0.47
80 10 0.16
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (79 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATATCCGGGCTAA
GTCCCGAAGGCAAT
Found at i:20304128 original size:40 final size:39
Alignment explanation
Indices: 20303975--20304103 Score: 177
Period size: 39 Copynumber: 3.3 Consensus size: 39
20303965 TGTGAATGAA
* * *
20303975 TGTGCGAATTGTGATATTCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
20304014 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
20304053 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
*
20304093 TGTGCGGGTTA
1 TGTGCGAGTTA
20304104 CCATAATCGG
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 59 0.75
40 20 0.25
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:20306951 original size:2 final size:2
Alignment explanation
Indices: 20306944--20306969 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
20306934 ATCGGGTATG
20306944 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
20306970 GTATGCCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20307445 original size:24 final size:24
Alignment explanation
Indices: 20307413--20307626 Score: 367
Period size: 24 Copynumber: 9.0 Consensus size: 24
20307403 TATCTCAAAT
20307413 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
20307437 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
20307461 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
20307485 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
20307509 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
20307533 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
20307557 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
20307581 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
20307605 GCACTA-GTGTGCGATTTGCTAT
1 GCACTATGTGTGCGATTTACTAT
20307627 AGCCACATTC
Statistics
Matches: 186, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
23 16 0.09
24 170 0.91
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:20315337 original size:24 final size:24
Alignment explanation
Indices: 20315120--20315334 Score: 367
Period size: 24 Copynumber: 9.0 Consensus size: 24
20315110 TATCTCAAAT
20315120 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
20315144 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
20315168 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
20315192 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
20315216 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
20315240 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
20315264 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
20315288 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
20315312 GCACTAGGTGTGCGATTTGCTAT
1 GCACTATGTGTGCGATTTACTAT
20315335 AGCCACATTC
Statistics
Matches: 186, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 186 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:20322717 original size:40 final size:39
Alignment explanation
Indices: 20322578--20322731 Score: 184
Period size: 39 Copynumber: 3.9 Consensus size: 39
20322568 TGTGAATGAA
* *
20322578 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
20322617 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
20322656 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGG-AATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAA-T
* ** * *
20322696 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
20322732 TGTTTTGAAC
Statistics
Matches: 100, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 62 0.62
40 38 0.38
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:20324764 original size:24 final size:23
Alignment explanation
Indices: 20324735--20324835 Score: 139
Period size: 24 Copynumber: 4.2 Consensus size: 23
20324725 AAAGGCTGTC
*
20324735 AGGAGAAGATTTAAGAGCTGATA
1 AGGAGAAGATTTAGGAGCTGATA
*
20324758 AGTGAGAGGATTTAGGAGCTGATA
1 AG-GAGAAGATTTAGGAGCTGATA
*
20324782 AGGGAGAGGATTTAGGAGCTGATAA
1 A-GGAGAAGATTTAGGAGCTGAT-A
20324807 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGAT-A
20324831 AGGAG
1 AGGAG
20324836 CAGGAGTTGG
Statistics
Matches: 71, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
23 2 0.03
24 66 0.93
25 3 0.04
ACGTcount: A:0.38, C:0.05, G:0.37, T:0.21
Consensus pattern (23 bp):
AGGAGAAGATTTAGGAGCTGATA
Found at i:20326544 original size:32 final size:32
Alignment explanation
Indices: 20326458--20326544 Score: 79
Period size: 32 Copynumber: 2.7 Consensus size: 32
20326448 CCATACTGTT
* *
20326458 ATCTGAATAAGGGGCTAAGGCCCAATTTAATGTA
1 ATCTGAA-AA-GGGCTTAGGCCCAATTCAATGTA
* *
20326492 ATCTGAAAAGGGCTCT-GGCCCAATATCACTGTT
1 ATCTGAAAAGGGCT-TAGGCCCAAT-TCAATGTA
*
20326525 ATCT-AAATGGGCTTAGGCCC
1 ATCTGAAAAGGGCTTAGGCCC
20326545 GATGGGTTGG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
31 1 0.02
32 26 0.58
33 11 0.24
34 7 0.16
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (32 bp):
ATCTGAAAAGGGCTTAGGCCCAATTCAATGTA
Found at i:20336167 original size:50 final size:48
Alignment explanation
Indices: 20336117--20336378 Score: 265
Period size: 48 Copynumber: 5.2 Consensus size: 48
20336107 CACAATATAC
* *
20336117 ACACATCGCCTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
20336165 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
* * * *
20336213 ACATATCTCATATATATATTTCACA-TTGACCATTCGGCTTTACCACATGT
1 ACACATCTC--ATACATATTTCACACTAG-CCATTCGGCTTTACCACATAT
* * *
20336263 GCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACATTTGGCTTTACCACATAT
1 ACACATCTCATACATATTTCACACTAGCCA-------TT-C----GGCTTTACCACATAT
* *
20336323 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
20336371 ACATATCT
1 ACACATCT
20336379 TATGCATCAA
Statistics
Matches: 187, Mismatches: 11, Indels: 32
0.81 0.05 0.14
Matches are distributed among these distances:
48 93 0.50
49 4 0.02
50 41 0.22
52 1 0.01
53 2 0.01
55 2 0.01
56 1 0.01
60 43 0.23
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
ACACATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
Found at i:20336181 original size:48 final size:48
Alignment explanation
Indices: 20336127--20336303 Score: 275
Period size: 48 Copynumber: 3.6 Consensus size: 48
20336117 ACACATCGCC
20336127 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
20336175 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * *
20336225 TATATATTTCACA-TTGACCATTCGGCTTTACCACATGTGCATATCTCA
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
20336273 TACATATTTCACATTAGCCATTCGGCTTTAC
1 TACATATTTCACACTAGCCATTCGGCTTTAC
20336304 ATTTGGCTTT
Statistics
Matches: 119, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
48 74 0.62
49 4 0.03
50 41 0.34
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:20336315 original size:60 final size:60
Alignment explanation
Indices: 20336243--20336363 Score: 215
Period size: 60 Copynumber: 2.0 Consensus size: 60
20336233 TCACATTGAC
* *
20336243 CATTCGGCTTTACCACATGTGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
20336303 CATTTGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
20336363 C
1 C
20336364 CACATATACA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.37
Consensus pattern (60 bp):
CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
Found at i:20340355 original size:29 final size:29
Alignment explanation
Indices: 20340313--20340444 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
20340303 AAAATTGTAC
20340313 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
20340342 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
20340371 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATAT
*
20340401 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
20340430 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
20340445 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:20340409 original size:59 final size:58
Alignment explanation
Indices: 20340313--20340444 Score: 237
Period size: 59 Copynumber: 2.3 Consensus size: 58
20340303 AAAATTGTAC
20340313 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
* *
20340371 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATAT
20340430 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
20340445 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 23 0.32
59 48 0.68
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:20340433 original size:88 final size:89
Alignment explanation
Indices: 20340283--20340444 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
20340273 GACAAGATTG
* * *
20340283 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
20340348 AAGTGTGCGAACTGAAAATATATA
66 AAGTGTGCGAACTGAAAATATATA
* * *
20340372 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
20340436 AAGTGTGCG
66 AAGTGTGCG
20340445 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAACTGAAAATATATA
Found at i:20348245 original size:59 final size:58
Alignment explanation
Indices: 20348152--20348280 Score: 231
Period size: 59 Copynumber: 2.2 Consensus size: 58
20348142 ATTGTACAGT
20348152 ACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATATAGC
1 ACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATATAGC
* *
20348210 ACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGC
1 ACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATATAGC
20348269 ACTAAGTGTGCG
1 ACTAAGTGTGCG
20348281 GATTCACTAT
Statistics
Matches: 68, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 20 0.29
59 48 0.71
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (58 bp):
ACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATATAGC
Found at i:20348269 original size:88 final size:89
Alignment explanation
Indices: 20348119--20348280 Score: 254
Period size: 88 Copynumber: 1.8 Consensus size: 89
20348109 GACAAGATTG
* * * *
20348119 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGTACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
20348184 AAGTGTGCGAACTGAAAATATATA
66 AAGTGTGCGAACTGAAAATATATA
* * *
20348208 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
20348272 AAGTGTGCG
66 AAGTGTGCG
20348281 GATTCACTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
88 51 0.77
89 15 0.23
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAACTGAAAATATATA
Found at i:20348292 original size:29 final size:29
Alignment explanation
Indices: 20348152--20348280 Score: 231
Period size: 29 Copynumber: 4.4 Consensus size: 29
20348142 ATTGTACAGT
*
20348152 ACTAAGTGTGCGAACTGAAAATATATAGC
1 ACTAAGTGTGCGAGCTGAAAATATATAGC
*
20348181 ACTAAGTGTGCGAACTGAAAATATATAGC
1 ACTAAGTGTGCGAGCTGAAAATATATAGC
20348210 ACTAAGTGTGCGAGCTGAAAATTATATAGC
1 ACTAAGTGTGCGAGCTGAAAA-TATATAGC
20348240 ACTAAGTGTGCGAGCTGAAAATATATAGC
1 ACTAAGTGTGCGAGCTGAAAATATATAGC
20348269 ACTAAGTGTGCG
1 ACTAAGTGTGCG
20348281 GATTCACTAT
Statistics
Matches: 98, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 69 0.70
30 29 0.30
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (29 bp):
ACTAAGTGTGCGAGCTGAAAATATATAGC
Found at i:20350240 original size:29 final size:29
Alignment explanation
Indices: 20350199--20350254 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
20350189 AATGTGACTG
*
20350199 GGCCTAACGGGCCATATAAATGTGATTTT
1 GGCCTAACGGGCCATATAAATATGATTTT
** *
20350228 GGCCTAATTGGCCATATGAATATGATT
1 GGCCTAACGGGCCATATAAATATGATT
20350255 GGGCATAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (29 bp):
GGCCTAACGGGCCATATAAATATGATTTT
Found at i:20353250 original size:16 final size:17
Alignment explanation
Indices: 20353229--20353264 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
20353219 GTAATGCCTT
*
20353229 AAAAATCTCGAAA-CCC
1 AAAAATCCCGAAATCCC
20353245 AAAAATCCCGAAATCCC
1 AAAAATCCCGAAATCCC
20353262 AAA
1 AAA
20353265 CTTTTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.53, C:0.31, G:0.06, T:0.11
Consensus pattern (17 bp):
AAAAATCCCGAAATCCC
Found at i:20354838 original size:29 final size:29
Alignment explanation
Indices: 20354798--20354869 Score: 117
Period size: 29 Copynumber: 2.5 Consensus size: 29
20354788 AATGTGACTA
* *
20354798 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAAGGTGATTTG
*
20354827 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAAGGTGATTTG
20354856 GGCCTAATGGGCCA
1 GGCCTAATGGGCCA
20354870 GGTACATGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAAGGTGATTTG
Found at i:20360805 original size:19 final size:19
Alignment explanation
Indices: 20360783--20360844 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
20360773 TTGATATAAG
20360783 ATATGTGATACAATATGAT
1 ATATGTGATACAATATGAT
* *
20360802 ATATTTGAT---ATA--AG
1 ATATGTGATACAATATGAT
20360816 ATATGTGATACAATATGAT
1 ATATGTGATACAATATGAT
*
20360835 ATATTTGATA
1 ATATGTGATA
20360845 TGTTTTAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 10
0.69 0.10 0.21
Matches are distributed among these distances:
14 9 0.27
16 3 0.09
17 3 0.09
19 18 0.55
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (19 bp):
ATATGTGATACAATATGAT
Found at i:20360805 original size:33 final size:33
Alignment explanation
Indices: 20360767--20360845 Score: 158
Period size: 33 Copynumber: 2.4 Consensus size: 33
20360757 TTTGTGATGT
20360767 ATATATTTGATATAAGATATGTGATACAATATG
1 ATATATTTGATATAAGATATGTGATACAATATG
20360800 ATATATTTGATATAAGATATGTGATACAATATG
1 ATATATTTGATATAAGATATGTGATACAATATG
20360833 ATATATTTGATAT
1 ATATATTTGATAT
20360846 GTTTTAGTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.42, C:0.03, G:0.14, T:0.42
Consensus pattern (33 bp):
ATATATTTGATATAAGATATGTGATACAATATG
Found at i:20363355 original size:43 final size:42
Alignment explanation
Indices: 20363208--20363366 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 42
20363198 TATGTGATTT
* * *
20363208 CATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA-GATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATC-ATAT-ATGA-TAA
** * * **
20363252 TTTGTAAGACCATGTCTGAGACATTGGCATCATATATGATTT
1 CATGTAAGACCACGTCTGGGACATTGGCATCATATATGATAA
* * * * *
20363294 CGTGTAAGACC-CTATCTGGGATAGTGGCATCTATATTTGATAA
1 CATGTAAGACCAC-GTCTGGGACATTGGCATC-ATATATGATAA
20363337 CATGTAAGACCACGTCTGGGACATTGGCAT
1 CATGTAAGACCACGTCTGGGACATTGGCAT
20363367 TGTACGAGTT
Statistics
Matches: 90, Mismatches: 21, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 26 0.29
43 37 0.41
44 27 0.30
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCATATATGATAA
Found at i:20368623 original size:40 final size:40
Alignment explanation
Indices: 20368519--20368738 Score: 295
Period size: 40 Copynumber: 5.5 Consensus size: 40
20368509 CATTTGAATG
*
20368519 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
20368559 ATATCC-GGTTAAGACCCAAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
20368598 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
20368638 ATATCCGGGCTAAGACCCGAAGGCATTTGTGGGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * *
20368678 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGC-ATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTTGTT
20368718 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
20368739 AAACTTGGGT
Statistics
Matches: 161, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 49 0.30
40 111 0.69
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:20370039 original size:40 final size:40
Alignment explanation
Indices: 20369980--20370107 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 40
20369970 CATTTGAATG
*
20369980 ATATCCGGGCTAAGC-CCCGAAGGCATTTGTGGGAGTTGTT
1 ATATCCGGGTTAA-CACCCGAAGGCATTTGTGGGAGTTGTT
* *
20370020 ATATCCGGGTTAACACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGTTAACACCCGAAGGCATTTGTGGGAGTTGTT
* * * * *
20370060 ATGTCCGGGTTAAGACCCGAAGGCAATTG-GGCGTGTGGTT
1 ATATCCGGGTTAACACCCGAAGGCATTTGTGG-GAGTTGTT
20370100 ATATCCGG
1 ATATCCGG
20370108 CTAAATCCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
39 2 0.03
40 73 0.97
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (40 bp):
ATATCCGGGTTAACACCCGAAGGCATTTGTGGGAGTTGTT
Found at i:20378561 original size:19 final size:19
Alignment explanation
Indices: 20378537--20378575 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
20378527 ACATTTACAT
20378537 AGTCATTCATTTTCTCGGA
1 AGTCATTCATTTTCTCGGA
20378556 AGTCATTCATTTTCTCGGA
1 AGTCATTCATTTTCTCGGA
20378575 A
1 A
20378576 TACCAGTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.41
Consensus pattern (19 bp):
AGTCATTCATTTTCTCGGA
Found at i:20378699 original size:43 final size:43
Alignment explanation
Indices: 20378643--20378816 Score: 153
Period size: 43 Copynumber: 4.0 Consensus size: 43
20378633 AATGCCAACA
* * * *
20378643 TCCCAGACGTGGTCTTACATGTAATCAGATATCGATGCCTTTG
1 TCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCTATG
* *
20378686 TCCCAGACATGGTCTTACACGAAATCAAATA-CGATG-ATAATG
1 TCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCT-ATG
* *
20378728 TCCCAGACATGGTCTTACACATAAATCATAA-GTCGATGCC-AGTG
1 TCCCAGACATGGTCTTACACGT-AATCA-AATATCGATGCCTA-TG
* * *
20378772 TCCTAGACGTGGTCTTACACGATAA-CACATATCGGAT-CCTATG
1 TCCCAGACATGGTCTTACACG-TAATCAAATATC-GATGCCTATG
20378815 TC
1 TC
20378817 AGGACATATG
Statistics
Matches: 106, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
42 28 0.26
43 43 0.41
44 33 0.31
45 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCTATG
Found at i:20385546 original size:8 final size:8
Alignment explanation
Indices: 20385533--20385557 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
20385523 AACTTAACTT
20385533 TATAAACA
1 TATAAACA
20385541 TATAAACA
1 TATAAACA
20385549 TATAAACA
1 TATAAACA
20385557 T
1 T
20385558 CATCAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (8 bp):
TATAAACA
Found at i:20385947 original size:42 final size:43
Alignment explanation
Indices: 20385876--20386002 Score: 141
Period size: 44 Copynumber: 2.9 Consensus size: 43
20385866 TCCTACAGGT
**
20385876 AATCAAATATCGATGCCTCTGTCCCAGACAAGGTCTTACACG-A
1 AATCAAATA-CGATGCCAATGTCCCAGACAAGGTCTTACACGTA
* *
20385919 AATCAAATACGATGCCAATGTCCTAGACATGGTCTTACACGTA
1 AATCAAATACGATGCCAATGTCCCAGACAAGGTCTTACACGTA
** **
20385962 AATCATAAGT-CGATGCCAACATCCCAGACATTGTCTTACAC
1 AATCA-AA-TACGATGCCAATGTCCCAGACAAGGTCTTACAC
20386003 AATAACACAT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
42 28 0.38
43 15 0.21
44 29 0.40
45 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (43 bp):
AATCAAATACGATGCCAATGTCCCAGACAAGGTCTTACACGTA
Found at i:20393608 original size:68 final size:65
Alignment explanation
Indices: 20393498--20393751 Score: 241
Period size: 68 Copynumber: 3.9 Consensus size: 65
20393488 ATACAGATGG
** * *
20393498 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGT-GTACAAGAGAGCTACGAGACA
1 TATGTAGCTAGGTCACATGGGTGGTACTAAGTGCACACCATGTAG-ACAAGAGAGCTACGAGA-A
20393562 TTA
64 -TA
* * *
20393565 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGCACACCATGTAGACAAGAGAGCTACG-GAAT
1 T-ATGTAGCTAGGTCACATGGGTGGTACTAAGTGCACACCATGTAGACAAGAGAGCTACGAGAAT
20393629 A
65 A
* * * * * *
20393630 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAG-
1 TATGTAGCTAGGTCACATGGGTGGTACTAAGT---GCACACCATGTAGACAAGAGAGCTACGAGA
20393694 ATA
63 ATA
* * *
20393697 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGCTCACCATGT-GTACAAGAAAGCT
1 TA-TGTAGCTAGGTCACATGGGTGGTACTAAGTGCACACCATGTAG-ACAAGAGAGCT
20393752 GAACTATATG
Statistics
Matches: 157, Mismatches: 22, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 26 0.17
65 3 0.02
66 22 0.14
67 33 0.21
68 52 0.33
69 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (65 bp):
TATGTAGCTAGGTCACATGGGTGGTACTAAGTGCACACCATGTAGACAAGAGAGCTACGAGAATA
Found at i:20393684 original size:67 final size:68
Alignment explanation
Indices: 20393530--20393694 Score: 196
Period size: 67 Copynumber: 2.4 Consensus size: 68
20393520 GGTGCTAAGT
* * *
20393530 GCACATCATGT-GTACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACT
1 GCACACCATGTAG-ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGCGTGATACC
*
20393594 ATGT
65 ATGA
* *
20393598 GCACACCATGTAGACAAGAGAGCTACG-GA-A-TAT-ATGTAGCTAGGTCGCATGCGTGGTTCCA
1 GCACACCATGTAGACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGCGTGATACCA
20393659 GGTGAA
66 --TG-A
*
20393665 GGACACCATGTAGACAAGAGAGCTACGAGA
1 GCACACCATGTAGACAAGAGAGCTACGAGA
20393695 TAAACTGGCT
Statistics
Matches: 85, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
64 24 0.28
65 3 0.04
66 3 0.04
67 28 0.33
68 26 0.31
69 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (68 bp):
GCACACCATGTAGACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGCGTGATACCA
TGA
Found at i:20401987 original size:93 final size:93
Alignment explanation
Indices: 20401875--20402046 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
20401865 GCCCATAAGT
* *
20401875 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
20401940 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
20401968 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
20402033 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
20402047 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:20402042 original size:46 final size:46
Alignment explanation
Indices: 20401867--20402042 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
20401857 TGTAACCCGC
* * *
20401867 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
20401913 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
20401963 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
20402006 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
20402043 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:20404468 original size:30 final size:30
Alignment explanation
Indices: 20404424--20404512 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
20404414 CAAAGATAAC
20404424 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
20404453 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
20404483 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
20404513 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:20404472 original size:15 final size:15
Alignment explanation
Indices: 20404424--20404503 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
20404414 CAAAGATAAC
*
20404424 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
20404438 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
20404453 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
20404468 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
20404483 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
20404498 AAGAAA
1 AAGAAA
20404504 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:20404512 original size:15 final size:15
Alignment explanation
Indices: 20404435--20404512 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
20404425 AGAAAACCGA
20404435 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
20404450 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
20404464 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
20404479 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
20404495 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
20404510 ATA
1 ATA
20404513 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:20407542 original size:46 final size:48
Alignment explanation
Indices: 20407420--20407549 Score: 171
Period size: 46 Copynumber: 2.8 Consensus size: 48
20407410 TGTAACCCGC
*
20407420 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAG-T-CAT
* * *
20407470 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG-CAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTCAT
20407513 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
20407550 TGCCCAAATA
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 2 0.03
46 32 0.45
47 30 0.42
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTCAT
Found at i:20407568 original size:46 final size:45
Alignment explanation
Indices: 20407425--20407568 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
20407415 CCCGCCCATA
* *
20407425 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
20407473 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
20407518 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
20407564 AGTGA
1 AGTGA
20407569 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:20415056 original size:42 final size:44
Alignment explanation
Indices: 20415000--20415110 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 44
20414990 GATGCCACTG
*
20415000 TCCCAGATAG-GGTCTTTCAC-AAAATCA-AA-TACGATGCCAACA
1 TCCCAGA-AGTGGTCTTACACGAAAATCATAAGT-CGATGCCAACA
*
20415042 TCCCAGAAGTGGTCTTACACGTAAATCATAAGTCGATGCCAACA
1 TCCCAGAAGTGGTCTTACACGAAAATCATAAGTCGATGCCAACA
* *
20415086 TCCCAGACGTGGTTTTACACGAAAA
1 TCCCAGAAGTGGTCTTACACGAAAA
20415111 CACATATCGG
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
41 2 0.03
42 16 0.27
43 6 0.10
44 35 0.58
45 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (44 bp):
TCCCAGAAGTGGTCTTACACGAAAATCATAAGTCGATGCCAACA
Found at i:20415068 original size:43 final size:43
Alignment explanation
Indices: 20414948--20415106 Score: 139
Period size: 43 Copynumber: 3.7 Consensus size: 43
20414938 AGCTTCTACA
** * * * *
20414948 ATGCCAATTTCCCAGACGTGATCTTACATGT-AATCAAATATAG
1 ATGCCAACATCCCAGAAGTGGTCTTACACGTAAATCAAATA-CG
* * *
20414991 ATGCC-ACTGTCCCAGATAG-GGTCTTTCAC-AAAATCAAATACG
1 ATGCCAAC-ATCCCAGA-AGTGGTCTTACACGTAAATCAAATACG
20415033 ATGCCAACATCCCAGAAGTGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACATCCCAGAAGTGGTCTTACACGTAAATCA-AA-TACG
* *
20415077 ATGCCAACATCCCAGACGTGGTTTTACACG
1 ATGCCAACATCCCAGAAGTGGTCTTACACG
20415107 AAAACACATA
Statistics
Matches: 95, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
41 2 0.02
42 23 0.24
43 36 0.38
44 33 0.35
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACATCCCAGAAGTGGTCTTACACGTAAATCAAATACG
Found at i:20421525 original size:8 final size:7
Alignment explanation
Indices: 20421497--20421526 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
20421487 CCCATTTCAA
20421497 TCATCCC
1 TCATCCC
20421504 TCATCCC
1 TCATCCC
20421511 TCATCCC
1 TCATCCC
20421518 TACATCCC
1 T-CATCCC
20421526 T
1 T
20421527 TATTCTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.17, C:0.53, G:0.00, T:0.30
Consensus pattern (7 bp):
TCATCCC
Found at i:20430462 original size:19 final size:19
Alignment explanation
Indices: 20430440--20430477 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
20430430 TTATTTTTAT
20430440 TATAATTTATCCAAAAACC
1 TATAATTTATCCAAAAACC
20430459 TATAATTTATCCAAAAACC
1 TATAATTTATCCAAAAACC
20430478 CATCATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (19 bp):
TATAATTTATCCAAAAACC
Found at i:20430485 original size:19 final size:19
Alignment explanation
Indices: 20430441--20430486 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
20430431 TATTTTTATT
*
20430441 ATAATTTATCCAAAAACCT
1 ATAATTTATCCAAAAACCC
20430460 ATAATTTATCCAAAAACCC
1 ATAATTTATCCAAAAACCC
*
20430479 ATCATTTA
1 ATAATTTA
20430487 ATTCTTCGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAATTTATCCAAAAACCC
Found at i:20435382 original size:40 final size:40
Alignment explanation
Indices: 20435257--20435408 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
20435247 TCGAATGATG
* **
20435257 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCGTA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * *
20435297 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* **
20435337 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCA-AA
* * *
20435378 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
20435409 TCGCTATATC
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
39 1 0.01
40 80 0.87
41 11 0.12
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:20439967 original size:29 final size:27
Alignment explanation
Indices: 20439933--20440035 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
20439923 TACTCAATCA
*
20439933 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
20439962 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
20439991 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
20440020 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
20440036 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:20446096 original size:40 final size:40
Alignment explanation
Indices: 20445932--20446098 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
20445922 AAATTGAATG
* * **
20445932 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * * * **
20445971 ATATCCGGGTTAAGACCTGAAGGCAAATGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
*
20446011 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
20446051 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
20446091 ATATCCGG
1 ATATCCGG
20446099 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 16 0.16
40 84 0.82
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:20451182 original size:29 final size:27
Alignment explanation
Indices: 20451148--20451250 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
20451138 TACTCAATCA
*
20451148 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
20451177 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
20451206 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
20451235 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
20451251 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:20453078 original size:26 final size:26
Alignment explanation
Indices: 20453042--20453091 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20453032 TCTTATCCCT
20453042 ATTTTACCCTTAGG-AAAATTTTAATG
1 ATTTTACCCTT-GGCAAAATTTTAATG
20453068 ATTTTACCCTTGGCAAAATTTTAA
1 ATTTTACCCTTGGCAAAATTTTAA
20453092 CTATTCTGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTTGGCAAAATTTTAATG
Found at i:20453103 original size:26 final size:25
Alignment explanation
Indices: 20453046--20453114 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 25
20453036 ATCCCTATTT
*
20453046 TACCCTTAGGAAAATTTTAATGATTT
1 TACCCTT-GGAAAATTTTAATGATTC
20453072 TACCCTTGGCAAAATTTTAACT-ATTC
1 TACCCTTGG-AAAATTTTAA-TGATTC
* *
20453098 TGCCCTTGATAAAATTT
1 TACCCTTG-GAAAATTT
20453115 CAAAAAAGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 2 0.05
26 34 0.92
27 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (25 bp):
TACCCTTGGAAAATTTTAATGATTC
Found at i:20458085 original size:29 final size:29
Alignment explanation
Indices: 20458052--20458154 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
20458042 CCTCCGAACT
** * * *
20458052 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
20458081 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
20458110 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
20458139 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
20458155 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:20467452 original size:20 final size:20
Alignment explanation
Indices: 20467427--20467464 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
20467417 GTTTATTCGC
*
20467427 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
20467447 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
20467465 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:20469601 original size:29 final size:28
Alignment explanation
Indices: 20469569--20469669 Score: 112
Period size: 29 Copynumber: 3.5 Consensus size: 28
20469559 GACGAGATTA
* *
20469569 GCACTGAGTGTGCGAGCTTGTAATGTATG
1 GCACTAAGTGTGCGAGCTTG-AATATATG
* *
20469598 GCACTAAGTGTGCGAGTTTGGACTATATG
1 GCACTAAGTGTGCGAGCTT-GAATATATG
* * *
20469627 GCACTATGTGTGCGGGCTTGAATCACATG
1 GCACTAAGTGTGCGAGCTTGAAT-ATATG
20469656 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
20469670 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
28 3 0.05
29 56 0.93
30 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGCTTGAATATATG
Found at i:20474634 original size:25 final size:25
Alignment explanation
Indices: 20474605--20474652 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
20474595 TTATAATATG
* * *
20474605 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
20474630 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
20474653 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:20474721 original size:20 final size:20
Alignment explanation
Indices: 20474696--20474754 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
20474686 TAAATATGGT
20474696 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
20474716 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
20474736 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
20474755 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:20474736 original size:11 final size:11
Alignment explanation
Indices: 20474700--20474754 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
20474690 TATGGTATGT
20474700 ATGATATGCAC
1 ATGATATGCAC
* *
20474711 ATGAAATG--T
1 ATGATATGCAC
20474720 ATGATATGCAC
1 ATGATATGCAC
*
20474731 ATGATATG--T
1 ATGATATGCAC
20474740 ATGATATGCAC
1 ATGATATGCAC
20474751 ATGA
1 ATGA
20474755 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:20474831 original size:24 final size:24
Alignment explanation
Indices: 20474804--20474946 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
20474794 GAGGAAGTGA
20474804 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
20474828 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
20474852 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
20474875 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
20474899 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
20474923 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
20474947 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:20474897 original size:47 final size:47
Alignment explanation
Indices: 20474804--20474946 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
20474794 GAGGAAGTGA
20474804 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
20474852 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
20474899 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
20474947 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:20474920 original size:71 final size:72
Alignment explanation
Indices: 20474804--20474947 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
20474794 GAGGAAGTGA
*
20474804 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
20474867 CCAGTTAT
65 CCAGTTAT
** * *
20474875 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
20474940 CAGTTAT
66 CAGTTAT
20474947 A
1 A
20474948 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:20475176 original size:31 final size:31
Alignment explanation
Indices: 20475138--20475230 Score: 168
Period size: 31 Copynumber: 3.0 Consensus size: 31
20475128 CGTTTACAGT
20475138 AGGCTTCGGCCCAGTAATATGAAATATGAAA
1 AGGCTTCGGCCCAGTAATATGAAATATGAAA
*
20475169 AGGCTTCGGCCCAGTAATAAGAAATATGAAA
1 AGGCTTCGGCCCAGTAATATGAAATATGAAA
*
20475200 AGGCTTCGGCCCAGTATTATGAAATATGAAA
1 AGGCTTCGGCCCAGTAATATGAAATATGAAA
20475231 TATGAAAAGG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AGGCTTCGGCCCAGTAATATGAAATATGAAA
Found at i:20482745 original size:25 final size:25
Alignment explanation
Indices: 20482716--20482763 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
20482706 TTATAATATG
* * *
20482716 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
20482741 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
20482764 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:20482831 original size:20 final size:20
Alignment explanation
Indices: 20482806--20482845 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
20482796 ATAAATATGG
20482806 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
20482826 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
20482846 GGTAATCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:20482923 original size:24 final size:24
Alignment explanation
Indices: 20482896--20483038 Score: 193
Period size: 24 Copynumber: 6.0 Consensus size: 24
20482886 GAGGAAGTGA
20482896 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
20482920 AAAAGGGCTTAAT-CCCCAGTTATC
1 AAAAGGGCTT-ATGCCCCAGTTATC
20482944 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
20482967 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
20482991 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
20483015 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
20483039 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
23 25 0.23
24 71 0.65
25 13 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:20482989 original size:47 final size:47
Alignment explanation
Indices: 20482896--20483038 Score: 191
Period size: 47 Copynumber: 3.0 Consensus size: 47
20482886 GAGGAAGTGA
20482896 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAAT-CCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTT-ATGCCCCAGTTATC
*
20482944 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
20482991 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
20483039 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 2 0.02
47 40 0.46
48 34 0.39
49 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:20483012 original size:71 final size:72
Alignment explanation
Indices: 20482896--20483039 Score: 204
Period size: 71 Copynumber: 2.0 Consensus size: 72
20482886 GAGGAAGTGA
*
20482896 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAATCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAATCCCCAGTTATCAAAAGAGGC-TAGGCCT
20482959 CCAGTTAT
65 CCAGTTAT
** * *
20482967 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTT-TTGCCCCAGTTATTAAAAGAGGCTAGGCCT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAAT-CCCCAGTTATCAAAAGAGGCTAGGCCT
20483031 CCAGTTAT
65 CCAGTTAT
20483039 A
1 A
20483040 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
70 1 0.02
71 52 0.80
72 12 0.18
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAATCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:20483264 original size:31 final size:31
Alignment explanation
Indices: 20483229--20483323 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
20483219 CGTTTACAGT
20483229 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
20483260 AAAGGCTTCGGCCCAGTAATAAGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
20483291 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
20483322 AA
1 AA
20483324 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:20488130 original size:15 final size:15
Alignment explanation
Indices: 20488112--20488148 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
20488102 TTTTTAATTT
*
20488112 TTTTATTTTCTTAAA
1 TTTTATTTACTTAAA
20488127 TTTTATTTACTTAAA
1 TTTTATTTACTTAAA
*
20488142 TATTATT
1 TTTTATT
20488149 CTCCTTGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTATTTACTTAAA
Found at i:20489422 original size:21 final size:21
Alignment explanation
Indices: 20489392--20489431 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
20489382 TTCTTAATTT
20489392 TATTTTTGTTATA-TATTTCA
1 TATTTTTGTTATAGTATTTCA
20489412 TATTTCTTGTTATAGTATTT
1 TATTT-TTGTTATAGTATTT
20489432 TTTTTAGGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 8 0.44
22 5 0.28
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (21 bp):
TATTTTTGTTATAGTATTTCA
Found at i:20490728 original size:113 final size:113
Alignment explanation
Indices: 20490530--20490759 Score: 451
Period size: 113 Copynumber: 2.0 Consensus size: 113
20490520 GACTTGTTTT
20490530 CAAAATAAATATTGCAAAATTATTTCAAGCATGAGTTATTAGCCTAGTGGTTAAAGGAAAATAAG
1 CAAAATAAATATTGCAAAATTATTTCAAGCATGAGTTATTAGCCTAGTGGTTAAAGGAAAATAAG
*
20490595 GAAGCATAGAAATTAGATTAAGGTCCCAAGTTCGAATCTTTTCCTTTG
66 GAAGCATAGAAATTAGATTAAGGTCCCAAGTTCGAATCTTTTCCCTTG
20490643 CAAAATAAATATTGCAAAATTATTTCAAGCATGAGTTATTAGCCTAGTGGTTAAAGGAAAATAAG
1 CAAAATAAATATTGCAAAATTATTTCAAGCATGAGTTATTAGCCTAGTGGTTAAAGGAAAATAAG
20490708 GAAGCATAGAAATTAGATTAAGGTCCCAAGTTCGAATCTTTTCCCTTG
66 GAAGCATAGAAATTAGATTAAGGTCCCAAGTTCGAATCTTTTCCCTTG
20490756 CAAA
1 CAAA
20490760 CTAATTAAGT
Statistics
Matches: 116, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 116 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (113 bp):
CAAAATAAATATTGCAAAATTATTTCAAGCATGAGTTATTAGCCTAGTGGTTAAAGGAAAATAAG
GAAGCATAGAAATTAGATTAAGGTCCCAAGTTCGAATCTTTTCCCTTG
Found at i:20500289 original size:29 final size:29
Alignment explanation
Indices: 20500247--20500304 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
20500237 GTTTAGGCAT
20500247 GAGGTTCTTATTTACAGTCATCTTCACTA
1 GAGGTTCTTATTTACAGTCATCTTCACTA
20500276 GAGGTTCTTATTTACAGTCATCTTCACTA
1 GAGGTTCTTATTTACAGTCATCTTCACTA
20500305 ACTTTATCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (29 bp):
GAGGTTCTTATTTACAGTCATCTTCACTA
Found at i:20504188 original size:34 final size:33
Alignment explanation
Indices: 20504132--20504198 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 33
20504122 TGTTTCAGTA
* * *
20504132 ATAGTTCAGTTTCAGTTAGGGCCTAAGGCCATT
1 ATAGTTCAGTATCAGTGAGGGCCTAAGCCCATT
* *
20504165 ATAGTATCAGTATCAGTGCGGGCCTTAGCCCATT
1 ATAGT-TCAGTATCAGTGAGGGCCTAAGCCCATT
20504199 TCAGTGACAG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 5 0.18
34 23 0.82
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (33 bp):
ATAGTTCAGTATCAGTGAGGGCCTAAGCCCATT
Found at i:20504459 original size:20 final size:21
Alignment explanation
Indices: 20504409--20504459 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
20504399 ACTCATCCCC
* *
20504409 ATGCAATATGTCATGCATCGT
1 ATGCAATATATCATACATCGT
20504430 AT-C-ATAATATCATACAT-GT
1 ATGCAAT-ATATCATACATCGT
20504449 ATGCAATATAT
1 ATGCAATATAT
20504460 ATAAAATGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
19 6 0.24
20 15 0.60
21 4 0.16
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (21 bp):
ATGCAATATATCATACATCGT
Found at i:20504693 original size:18 final size:19
Alignment explanation
Indices: 20504653--20504693 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
20504643 TGTAATGTTG
*
20504653 GCCCATGTAGGCCCACACA
1 GCCCATGTAGGCCCACAAA
*
20504672 -CCCATGT-GGCTCACAAA
1 GCCCATGTAGGCCCACAAA
20504689 GCCCA
1 GCCCA
20504694 AAAATGGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.27, C:0.41, G:0.20, T:0.12
Consensus pattern (19 bp):
GCCCATGTAGGCCCACAAA
Found at i:20509239 original size:53 final size:53
Alignment explanation
Indices: 20509141--20509245 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
20509131 ATAAACTACT
* * * * ** *
20509141 ATAAGGCAAAGATCCCATGTAAGACCATTCTAAGGCATGGCAATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCAGTCTAAGACATGAAAATGGTAAGTTC
20509194 ATAAGGCAAAGATACCACGTAAGACCACGTC-AAGACATGAAAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAAGACCA-GTCTAAGACATGAAAATGGTAAGTT
20509246 TAAAAATGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 42 0.95
54 2 0.05
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCAGTCTAAGACATGAAAATGGTAAGTTC
Found at i:20511641 original size:40 final size:40
Alignment explanation
Indices: 20511596--20511803 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
20511586 CGGAATACAA
*
20511596 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
20511636 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
20511676 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
20511716 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * * ** * *
20511756 CCGGATATAATTACTAGAATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
20511796 CCGGATAT
1 CCGGATAT
20511804 CATTCAATTG
Statistics
Matches: 144, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:20513428 original size:40 final size:39
Alignment explanation
Indices: 20513383--20513590 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
20513373 CGGAATACAA
*
20513383 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
20513423 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
20513463 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* * * * *
20513503 CCGGATTTAGTC-ACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
20513543 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACT-GCACAAATGCCTTCGGGTCTTAGC
20513583 CCGGATAT
1 CCGGATAT
20513591 CATTTAATTG
Statistics
Matches: 144, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.01
40 141 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACAACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:20513530 original size:80 final size:81
Alignment explanation
Indices: 20513383--20513588 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 81
20513373 CGGAATACAA
* * *
20513383 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
20513447 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
20513463 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
20513526 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
20513543 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
20513589 ATCATTTAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 105 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:20514260 original size:34 final size:33
Alignment explanation
Indices: 20514217--20514283 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 33
20514207 TGTTTCAGTA
* *
20514217 ATAGTTCAGTTTCAGTTAGGGCCTAAGCCCATT
1 ATAGTTCAGTGTCAGTGAGGGCCTAAGCCCATT
* *
20514250 ATAGTATCAGTGTCAGTGCGGGCCTTAGCCCATT
1 ATAGT-TCAGTGTCAGTGAGGGCCTAAGCCCATT
20514284 TCAGTGACAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 5 0.17
34 24 0.83
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (33 bp):
ATAGTTCAGTGTCAGTGAGGGCCTAAGCCCATT
Found at i:20514544 original size:20 final size:21
Alignment explanation
Indices: 20514494--20514544 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
20514484 ACTCATCCCC
* *
20514494 ATGCAATATGTCATGCATCGT
1 ATGCAATATATCATACATCGT
20514515 AT-C-ATAATATCATACAT-GT
1 ATGCAAT-ATATCATACATCGT
20514534 ATGCAATATAT
1 ATGCAATATAT
20514545 ATAAAATGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
19 6 0.24
20 15 0.60
21 4 0.16
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (21 bp):
ATGCAATATATCATACATCGT
Found at i:20514778 original size:18 final size:19
Alignment explanation
Indices: 20514738--20514778 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
20514728 TGTAATGTGG
*
20514738 GCCCATGTAGGCCCACACA
1 GCCCATGTAGGCCCACAAA
*
20514757 -CCCATGT-GGCTCACAAA
1 GCCCATGTAGGCCCACAAA
20514774 GCCCA
1 GCCCA
20514779 AAAATGGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.27, C:0.41, G:0.20, T:0.12
Consensus pattern (19 bp):
GCCCATGTAGGCCCACAAA
Found at i:20519301 original size:53 final size:53
Alignment explanation
Indices: 20519203--20519307 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
20519193 ATAAACTACT
* * * * ** *
20519203 ATAAGGCAAAGATCCCATGTAAGACCATTCTAAGGCATGGCAATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCAGTCTAAGACATGAAAATGGTAAGTTC
20519256 ATAAGGCAAAGATACCACGTAAGACCACGTC-AAGACATGAAAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAAGACCA-GTCTAAGACATGAAAATGGTAAGTT
20519308 TAAAAATGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 42 0.95
54 2 0.05
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCAGTCTAAGACATGAAAATGGTAAGTTC
Found at i:20521702 original size:40 final size:40
Alignment explanation
Indices: 20521657--20521864 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
20521647 CGGAATACAA
*
20521657 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
20521697 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
20521737 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
20521777 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * * ** * *
20521817 CCGGATATAATTACTAGAATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
20521857 CCGGATAT
1 CCGGATAT
20521865 CATTCAATTG
Statistics
Matches: 144, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:20523488 original size:40 final size:39
Alignment explanation
Indices: 20523443--20523650 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 39
20523433 CGGAATACAA
*
20523443 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
20523483 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
20523523 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
20523563 CCGGATTTAGTC-ACTAGCA-AAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACT-GCACAAA-TGCCTTCGGGTCTTAGC
* * * * *
20523603 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACT-GCACAAATGCCTTCGGGTCTTAGC
20523643 CCGGATAT
1 CCGGATAT
20523651 CATTTAATTG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 4 0.03
40 137 0.94
41 4 0.03
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACAACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:20523590 original size:80 final size:81
Alignment explanation
Indices: 20523443--20523648 Score: 258
Period size: 80 Copynumber: 2.6 Consensus size: 81
20523433 CGGAATACAA
* * *
20523443 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
20523507 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
*
20523523 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCA-AAA
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
20523585 TTGCCTTCGGGTCTTAAC
65 -TGCCTTCGGGTATTAAC
* * ** * *
20523603 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
20523649 ATCATTTAAT
Statistics
Matches: 111, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
79 4 0.04
80 103 0.93
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:20526738 original size:39 final size:40
Alignment explanation
Indices: 20526598--20526803 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
20526588 CAATTGAATG
* * ** * **
20526598 ATATCCGGGCTAAGTCCC-AAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
20526637 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* *
20526677 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
20526717 AAATCC-GGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
20526756 GTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
20526796 ATATCCGG
1 ATATCCGG
20526804 TTGTATTCCA
Statistics
Matches: 140, Mismatches: 21, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
39 53 0.38
40 83 0.59
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:20526739 original size:79 final size:79
Alignment explanation
Indices: 20526651--20526803 Score: 218
Period size: 79 Copynumber: 1.9 Consensus size: 79
20526641 CCGGGTTAAG
* *
20526651 ACCCGAAGGCAATTGTGCTAGT-GACTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 ACCCGAAGGCAATTGTGCAAGTCG-CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGG
20526715 TTAAATCCGGCTAAT
65 TTAAATCCGGCTAAT
* * ** *
20526730 ACCCGAAGGCATTTGTGCAAGTCGTTGTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGT
1 ACCCGAAGGCAATTGTGCAAGTCGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGT
*
20526795 TATATCCGG
66 TAAATCCGG
20526804 TTGTATTCCA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
79 64 0.98
80 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
ACCCGAAGGCAATTGTGCAAGTCGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGT
TAAATCCGGCTAAT
Found at i:20534604 original size:40 final size:40
Alignment explanation
Indices: 20534545--20534752 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
20534535 CAATTGAATG
* * * *
20534545 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
20534585 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
20534625 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
20534665 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
20534705 GTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
20534745 ATATCCGG
1 ATATCCGG
20534753 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:20534683 original size:80 final size:80
Alignment explanation
Indices: 20534547--20534752 Score: 243
Period size: 80 Copynumber: 2.6 Consensus size: 80
20534537 ATTGAATGAT
* * ** * * *
20534547 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
20534612 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
20534627 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* **
20534692 TGTGCAAGTCGTTGT
66 TGTGCAAGTCGCTAC
* *
20534707 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
20534753 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 106 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:20542423 original size:40 final size:39
Alignment explanation
Indices: 20542378--20542585 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
20542368 CGGAATACAA
*
20542378 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
20542418 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
20542458 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
20542498 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
20542538 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
20542578 CCGGATAT
1 CCGGATAT
20542586 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:20542525 original size:80 final size:81
Alignment explanation
Indices: 20542378--20542583 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
20542368 CGGAATACAA
* * * *
20542378 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
20542442 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
20542458 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
20542521 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
20542538 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
20542584 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:20551739 original size:40 final size:40
Alignment explanation
Indices: 20551694--20551901 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
20551684 CGGAATACAA
*
20551694 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
20551734 CCGGATATAACGACTTGCACAAATGCCTTTGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
20551774 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
20551814 CCGGATGTAGTCACTAGCAC-AATTACCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * * ** * *
20551854 CCGGATATAATTACTAGAATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
20551894 CCGGATAT
1 CCGGATAT
20551902 CATTCAATTG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:20558089 original size:2 final size:2
Alignment explanation
Indices: 20558082--20558113 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
20558072 GCTTCGCTAC
20558082 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20558114 CTGTTCTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20564084 original size:28 final size:29
Alignment explanation
Indices: 20564053--20564151 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
20564043 ATAATAAGCC
*
20564053 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
20564081 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
20564109 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
20564138 CGCACACTTAGTGC
1 CGCACACTTAGTGC
20564152 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:20567650 original size:8 final size:8
Alignment explanation
Indices: 20567637--20567684 Score: 51
Period size: 8 Copynumber: 5.6 Consensus size: 8
20567627 GGCCGAAAAC
20567637 GGGCCAAT
1 GGGCCAAT
20567645 GGGCCAAT
1 GGGCCAAT
* *
20567653 GGGCTAAAAAC
1 GGGC---CAAT
20567664 GGGCCAAT
1 GGGCCAAT
20567672 GGGCCAAT
1 GGGCCAAT
20567680 GGGCC
1 GGGCC
20567685 CACTTTGGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
8 27 0.82
11 6 0.18
ACGTcount: A:0.27, C:0.25, G:0.38, T:0.10
Consensus pattern (8 bp):
GGGCCAAT
Found at i:20567654 original size:27 final size:27
Alignment explanation
Indices: 20567623--20567684 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
20567613 TTTTGGGCTT
*
20567623 AATGGGCCGAAAACGGGCCAATGGGCC
1 AATGGGCCAAAAACGGGCCAATGGGCC
*
20567650 AATGGGCTAAAAACGGGCCAATGGGCC
1 AATGGGCCAAAAACGGGCCAATGGGCC
20567677 AATGGGCC
1 AATGGGCC
20567685 CACTTTGGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.31, C:0.24, G:0.35, T:0.10
Consensus pattern (27 bp):
AATGGGCCAAAAACGGGCCAATGGGCC
Found at i:20567983 original size:27 final size:26
Alignment explanation
Indices: 20567939--20567990 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
20567929 CTCACTGCAA
*
20567939 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
20567966 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
20567991 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:20568030 original size:2 final size:2
Alignment explanation
Indices: 20568023--20568050 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
20568013 GCTTTGCCAC
20568023 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20568051 CTGTTCTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20575885 original size:14 final size:14
Alignment explanation
Indices: 20575866--20575896 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
20575856 CATCTAAAAG
20575866 GTAAAATTCAAGGT
1 GTAAAATTCAAGGT
20575880 GTAAAATTCAAGGT
1 GTAAAATTCAAGGT
20575894 GTA
1 GTA
20575897 CTGGTAAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29
Consensus pattern (14 bp):
GTAAAATTCAAGGT
Found at i:20582975 original size:17 final size:17
Alignment explanation
Indices: 20582953--20582991 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
20582943 GGGTCCTGTG
*
20582953 GGCCCAATGGGCTCGTA
1 GGCCCAATGGGATCGTA
*
20582970 GGCCCAATGGGATCGTG
1 GGCCCAATGGGATCGTA
20582987 GGCCC
1 GGCCC
20582992 CACACAGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (17 bp):
GGCCCAATGGGATCGTA
Found at i:20583549 original size:22 final size:22
Alignment explanation
Indices: 20583506--20583614 Score: 92
Period size: 22 Copynumber: 5.0 Consensus size: 22
20583496 CTGTGATATT
* * * *
20583506 TACGGCCTTTAGCCTTCTTGTC
1 TACGGCATTGAGCCATCCTGTC
*
20583528 TATGGCATTGAGCCATCCTGTC
1 TACGGCATTGAGCCATCCTGTC
* *
20583550 TACGGCATTGAGCCGTCCAGTC
1 TACGGCATTGAGCCATCCTGTC
* * * * *
20583572 TATGTCGTTGAGCCGTCCTATC
1 TACGGCATTGAGCCATCCTGTC
* *
20583594 TACAGCGTTGAGCCATCCTGT
1 TACGGCATTGAGCCATCCTGT
20583615 TGACTTAGTG
Statistics
Matches: 69, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 69 1.00
ACGTcount: A:0.16, C:0.29, G:0.23, T:0.32
Consensus pattern (22 bp):
TACGGCATTGAGCCATCCTGTC
Found at i:20587505 original size:30 final size:30
Alignment explanation
Indices: 20587471--20587531 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
20587461 TCCTTAACTC
20587471 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
20587501 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
20587531 A
1 A
20587532 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:20595482 original size:16 final size:17
Alignment explanation
Indices: 20595461--20595500 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
20595451 CTTTCATTAA
*
20595461 GTTTTTAAGATTTAATT
1 GTTTTTAAGATTCAATT
*
20595478 GTTTTTAAGATTCATTT
1 GTTTTTAAGATTCAATT
20595495 GTTTTT
1 GTTTTT
20595501 CTTTTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.23, C:0.03, G:0.12, T:0.62
Consensus pattern (17 bp):
GTTTTTAAGATTCAATT
Found at i:20596145 original size:15 final size:15
Alignment explanation
Indices: 20596125--20596160 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
20596115 ATGTCAAAAT
20596125 GATTAAGGCACTTAG
1 GATTAAGGCACTTAG
*
20596140 GATTAAGGCATTTAG
1 GATTAAGGCACTTAG
20596155 GATTAA
1 GATTAA
20596161 CCCACTCATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (15 bp):
GATTAAGGCACTTAG
Found at i:20613164 original size:29 final size:29
Alignment explanation
Indices: 20613130--20613232 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
20613120 TAATCAGCCG
** *
20613130 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
20613159 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
20613188 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
20613217 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
20613233 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:20621065 original size:40 final size:40
Alignment explanation
Indices: 20620999--20621165 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
20620989 AAATTGAATG
* * *
20620999 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
20621038 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
20621078 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
20621118 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
20621158 ATATCCGG
1 ATATCCGG
20621166 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:20628169 original size:17 final size:18
Alignment explanation
Indices: 20628127--20628175 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
20628117 AGTTGAAAAG
20628127 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
20628146 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
20628163 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
20628176 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:20629059 original size:40 final size:40
Alignment explanation
Indices: 20628993--20629143 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
20628983 AAATTGAATG
* * *
20628993 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
20629032 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
20629072 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
20629112 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
20629144 ACTGATTATA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:20634952 original size:29 final size:29
Alignment explanation
Indices: 20634928--20635021 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
20634918 TCGCACACCC
*
20634928 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
20634957 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
20634986 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
20635015 AGTGCCA
1 AGTGCCA
20635022 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:20634961 original size:58 final size:58
Alignment explanation
Indices: 20634891--20635021 Score: 174
Period size: 58 Copynumber: 2.3 Consensus size: 58
20634881 ATTTAAGCCC
* * * *
20634891 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
20634949 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
20635007 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
20635022 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
58 63 0.98
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:20636826 original size:3 final size:3
Alignment explanation
Indices: 20636818--20636856 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
20636808 TTAATTAACT
20636818 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
20636857 ATATCTTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:20640633 original size:42 final size:42
Alignment explanation
Indices: 20640503--20640665 Score: 182
Period size: 42 Copynumber: 3.9 Consensus size: 42
20640493 TACTGTACCA
* *
20640503 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCGTATCG
* * ** *
20640545 ATGCCAATAGCCCAGTTATGGTCTTACACAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAATCTCGTATCG
* * * * *
20640588 ATGCCATATCCTAGATACGGTCTTACACGTAGTTTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCGTATCG
* * *
20640630 ATGCCATATCCTAGATATGGTCTTACTCGTAGTCTC
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTC
20640666 AGTAACTCTA
Statistics
Matches: 100, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 65 0.65
43 35 0.35
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCGTATCG
Found at i:20641833 original size:21 final size:21
Alignment explanation
Indices: 20641804--20641867 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
20641794 CCGTAAAGGT
*
20641804 TGAATGGAAGCTCATAAGAGC
1 TGAACGGAAGCTCATAAGAGC
* * *
20641825 TGAACGGAAACCCATAAGGGC
1 TGAACGGAAGCTCATAAGAGC
* * * *
20641846 TAAACAGAAGCTTAGAAGAGC
1 TGAACGGAAGCTCATAAGAGC
20641867 T
1 T
20641868 AAACAGAAAA
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.41, C:0.17, G:0.27, T:0.16
Consensus pattern (21 bp):
TGAACGGAAGCTCATAAGAGC
Found at i:20641856 original size:42 final size:42
Alignment explanation
Indices: 20641810--20641903 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
20641800 AGGTTGAATG
* * *
20641810 GAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGCTAAACA
1 GAAGCTCATAAGAGCTAAACAGAAAACCATAAGGGCTAAACA
* * * * *
20641852 GAAGCTTAGAAGAGCTAAACAGAAAACCATTAGGGTTAAACT
1 GAAGCTCATAAGAGCTAAACAGAAAACCATAAGGGCTAAACA
*
20641894 GAAACTCATA
1 GAAGCTCATA
20641904 TGAGTTAACT
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.16
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTAAACAGAAAACCATAAGGGCTAAACA
Found at i:20646244 original size:27 final size:27
Alignment explanation
Indices: 20646206--20646547 Score: 307
Period size: 27 Copynumber: 12.6 Consensus size: 27
20646196 TTAGTTTACC
*
20646206 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACTAAAATACCCTCAATTTGTA
*
20646233 AAATTACTAAAATACCC-CTAGTTTGTA
1 AAATTACTAAAATACCCTC-AATTTGTA
* ***
20646260 AAATTACAAAAATACCCTTGGTTTGTA
1 AAATTACTAAAATACCCTCAATTTGTA
* * *
20646287 AAATTACCAAAATACCC-CTAGTTTGTG
1 AAATTACTAAAATACCCTC-AATTTGTA
* * *
20646314 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-AATTTGTA
* * *
20646341 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCAATTTGTA
* * *
20646368 AAATTACCAAAATACCCTTAATTTGTG
1 AAATTACTAAAATACCCTCAATTTGTA
* * * *
20646395 AAATTACTGAAATACCCTCGACTTATA
1 AAATTACTAAAATACCCTCAATTTGTA
*
20646422 AAATTACCAAAATACCC-CTAATTTGTA
1 AAATTACTAAAATACCCTC-AATTTGTA
* * *
20646449 AAATTA-TCGAAATACCCTCAGTTTGCA
1 AAATTACT-AAAATACCCTCAATTTGTA
*
20646476 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTAAAATACCCTCAATTTGTA
* * *
20646503 AAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACTAAAATACCCTCAATTTGT-A
* *
20646531 AAATTACCAAAGTACCC
1 AAATTACTAAAATACCC
20646548 CCGATTTACA
Statistics
Matches: 262, Mismatches: 44, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.01
27 242 0.92
28 18 0.07
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCAATTTGTA
Found at i:20646272 original size:54 final size:53
Alignment explanation
Indices: 20646206--20646547 Score: 348
Period size: 54 Copynumber: 6.3 Consensus size: 53
20646196 TTAGTTTACC
* * *
20646206 AAATTACTAAAATGCCCTCAATTTGTAAAATTACTAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATA-CCCTAGTTTGTA
* *** ** *
20646260 AAATTACAAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATA-CCCTAGTTTGTA
* * * *
20646314 AAATTACCAAAATACCC-CTGATTTGTGAAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTC-AATTTGTAAAATTACTGAAATACCCTAG-TTTGTA
* * * * *
20646368 AAATTACCAAAATACCCTTAATTTGTGAAATTACTGAAATACCCTCGACTTATA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATACCCTAG-TTTGTA
*
20646422 AAATTACCAAAATACCC-CTAATTTGTAAAATTA-TCGAAATACCCTCAGTTTGCA
1 AAATTACCAAAATACCCTC-AATTTGTAAAATTACT-GAAATACCCT-AGTTTGTA
** * *
20646476 AAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATACCCTAG-TTTGT-A
*
20646531 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
20646548 CCGATTTACA
Statistics
Matches: 245, Mismatches: 33, Indels: 19
0.82 0.11 0.06
Matches are distributed among these distances:
53 7 0.03
54 220 0.90
55 18 0.07
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACTGAAATACCCTAGTTTGTA
Found at i:20646345 original size:81 final size:81
Alignment explanation
Indices: 20646227--20646548 Score: 346
Period size: 81 Copynumber: 4.0 Consensus size: 81
20646217 ATGCCCTCAA
* * * **
20646227 TTTGTAAAATTACTAAAATACCC-CTAGTTTGTAAAATTACAAAAATACCCTTGGTTTGTAAAAT
1 TTTGTAAAATTACTAAAATACCCTCGA-TTTGTAAAATTACTAAAATACCCTCGACTTGTAAAAT
20646291 TACCAAAATACCCCTAG
65 TACCAAAATACCCCTAG
* * * *
20646308 TTTGTGAAATTACCAAAATACCC-CTGATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAAT
1 TTTGTAAAATTACTAAAATACCCTC-GATTTGTAAAATTACTAAAATACCCTCGACTTGTAAAAT
* *
20646372 TACCAAAATACCCTTAA
65 TACCAAAATACCCCTAG
* * * * * * *
20646389 TTTGTGAAATTACTGAAATACCCTCGACTTATAAAATTACCAAAATACCC-CTAATTTGTAAAAT
1 TTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTC-GACTTGTAAAAT
* *
20646453 TATCGAAATA-CCCTCAG
65 TACCAAAATACCCCT-AG
* * * *
20646470 TTTGCAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAAAT
1 TTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGACTTGT-AAAAT
*
20646535 TACCAAAGTACCCC
65 TACCAAAATACCCC
20646549 CGATTTACAG
Statistics
Matches: 198, Mismatches: 36, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
80 4 0.02
81 176 0.89
82 15 0.08
83 3 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
TTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGACTTGTAAAATT
ACCAAAATACCCCTAG
Found at i:20646600 original size:27 final size:27
Alignment explanation
Indices: 20646206--20646601 Score: 291
Period size: 27 Copynumber: 14.6 Consensus size: 27
20646196 TTAGTTTACC
** * *
20646206 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
** *
20646233 AAATTACTAAAATACCC-CTAGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTA
** * *
20646260 AAATTACAAAAATACCCTTGGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
20646287 AAATTACCAAAATACCC-CTAGTTTGTG
1 AAATTACCGAAATACCCTCGA-TTTGTA
* *
20646314 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCGAAATACCCTC-GATTTGTA
* *
20646341 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* ** *
20646368 AAATTACCAAAATACCCTTAATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
20646395 AAATTACTGAAATACCCTCGACTTATA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
20646422 AAATTACCAAAATACCC-CTAATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
* *
20646449 AAATTATCGAAATACCCTC-AGTTTGCA
1 AAATTACCGAAATACCCTCGA-TTTGTA
* *
20646476 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
20646503 AAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACCGAAATACCCTCGATTTGT-A
* **
20646531 AAATTACC-AAAGTACCCCCGATTTACA
1 AAATTACCGAAA-TACCCTCGATTTGTA
* *** **
20646558 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCGAAATACCCTCGATTTGTA
**
20646585 AAATTATTGAAATACCC
1 AAATTACCGAAATACCC
20646602 CTGTCGGGTA
Statistics
Matches: 299, Mismatches: 58, Indels: 24
0.78 0.15 0.06
Matches are distributed among these distances:
26 4 0.01
27 273 0.91
28 22 0.07
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Done.