Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 693 of 770
Found at i:218404932 original size:40 final size:39
Alignment explanation
Indices: 218404767--218404950 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
218404757 AAATTGAATG
* * *
218404767 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
218404807 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
218404847 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
218404887 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
218404926 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
218404951 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:218404975 original size:80 final size:81
Alignment explanation
Indices: 218404807--218404995 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
218404797 GCTGGAAATT
* * * *
218404807 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
218404872 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
218404888 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
218404951 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
218404967 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
218404996 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:218413049 original size:40 final size:39
Alignment explanation
Indices: 218412884--218413067 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
218412874 AAATTGAATG
* * *
218412884 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
218412924 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
218412964 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
218413004 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
218413043 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
218413068 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:218413092 original size:80 final size:81
Alignment explanation
Indices: 218412924--218413112 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
218412914 GCTGGAAATT
* * * *
218412924 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
218412989 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
218413005 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
218413068 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
218413084 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
218413113 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:218416691 original size:2 final size:2
Alignment explanation
Indices: 218416684--218416712 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
218416674 CACATTCGGC
218416684 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
218416713 GTATGCCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:218417294 original size:28 final size:28
Alignment explanation
Indices: 218417262--218417331 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
218417252 AATGAGATTG
*
218417262 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
218417290 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
218417318 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
218417332 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:218425194 original size:28 final size:28
Alignment explanation
Indices: 218425162--218425231 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
218425152 AATGAGATTG
*
218425162 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
218425190 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
218425218 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
218425232 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:218427358 original size:20 final size:20
Alignment explanation
Indices: 218427307--218427349 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
218427297 TTACTTTATT
218427307 AATCAAAATCCCGAACCCAA
1 AATCAAAATCCCGAACCCAA
218427327 AATCAAAATCCCGAACCCAA
1 AATCAAAATCCCGAACCCAA
218427347 AAT
1 AAT
218427350 ACTCATCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.51, C:0.33, G:0.05, T:0.12
Consensus pattern (20 bp):
AATCAAAATCCCGAACCCAA
Found at i:218441020 original size:47 final size:47
Alignment explanation
Indices: 218440962--218441058 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
218440952 TATGAACTTA
*
218440962 CCTCGAGTATAAAACCAGTGAAATGAGTCAATTACTCGATAATCTTG
1 CCTCGACTATAAAACCAGTGAAATGAGTCAATTACTCGATAATCTTG
*
218441009 CCTCGACTATAAAACGAGTGAAATGAGTCAATTACTCGATAATCTTG
1 CCTCGACTATAAAACCAGTGAAATGAGTCAATTACTCGATAATCTTG
218441056 CCT
1 CCT
218441059 TTCCCCTATC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (47 bp):
CCTCGACTATAAAACCAGTGAAATGAGTCAATTACTCGATAATCTTG
Found at i:218447237 original size:40 final size:39
Alignment explanation
Indices: 218447192--218447395 Score: 210
Period size: 40 Copynumber: 5.1 Consensus size: 39
218447182 CGGAATACAA
218447192 CCGGATATAACCACACGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACA-GCACAAATGCCTTCGGGTCTTAGC
* * *
218447232 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-AGCACAAATGCCTTCGGGTCTTAGC
* * * *
218447272 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGA
1 CCGGATATAACCAC-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
218447312 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCAC-AGCACAAATGCCTTCGGGTCTTAGC
** * * *
218447352 CCGGATATAAATACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCAC-AGCACAAATGCCTTCGGGTCTTAGC
218447392 CCGG
1 CCGG
218447396 GTATCATTCA
Statistics
Matches: 138, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACAGCACAAATGCCTTCGGGTCTTAGC
Found at i:218449156 original size:2 final size:2
Alignment explanation
Indices: 218449149--218449174 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
218449139 ACCAGAAAAG
218449149 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
218449175 GTGTGGCGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:218451222 original size:10 final size:10
Alignment explanation
Indices: 218451207--218451236 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
218451197 TACTCTTTTT
*
218451207 CCCTTCTTCC
1 CCCTTCTCCC
218451217 CCCTTCTCCC
1 CCCTTCTCCC
218451227 CCCTTCTCCC
1 CCCTTCTCCC
218451237 TTTGCGTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (10 bp):
CCCTTCTCCC
Found at i:218452865 original size:14 final size:14
Alignment explanation
Indices: 218452848--218452878 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
218452838 CTGTTATTTA
*
218452848 TTATTTTTATGTTT
1 TTATTTTTATCTTT
218452862 TTATTTTTATCTTT
1 TTATTTTTATCTTT
218452876 TTA
1 TTA
218452879 AAACTACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.77
Consensus pattern (14 bp):
TTATTTTTATCTTT
Found at i:218454846 original size:13 final size:13
Alignment explanation
Indices: 218454828--218454858 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
218454818 CTGGACTTCC
218454828 TCACACAGGTAGT
1 TCACACAGGTAGT
218454841 TCACACAGGTAGT
1 TCACACAGGTAGT
218454854 TCACA
1 TCACA
218454859 TGTTGGATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (13 bp):
TCACACAGGTAGT
Found at i:218458362 original size:40 final size:40
Alignment explanation
Indices: 218458307--218458470 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
218458297 TGAATGATAC
* * *
218458307 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
218458347 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
218458387 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
218458427 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
218458467 CCGG
1 CCGG
218458471 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:218466464 original size:40 final size:40
Alignment explanation
Indices: 218466409--218466572 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
218466399 TGAATGATAC
* * *
218466409 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
218466449 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
218466489 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
218466529 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
218466569 CCGG
1 CCGG
218466573 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:218470530 original size:40 final size:40
Alignment explanation
Indices: 218470422--218470631 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
218470412 CGGGATTTAA
* * * * *
218470422 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
218470462 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
218470502 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
218470542 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
218470582 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
218470622 CCGGATATAT
1 CCGGATATAT
218470632 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:218478664 original size:40 final size:40
Alignment explanation
Indices: 218478556--218478765 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
218478546 CGGGATTTAA
* * * * *
218478556 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
218478596 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
218478636 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
218478676 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
218478716 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
218478756 CCGGATATAT
1 CCGGATATAT
218478766 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:218482409 original size:38 final size:39
Alignment explanation
Indices: 218482340--218482516 Score: 206
Period size: 38 Copynumber: 4.6 Consensus size: 39
218482330 TACTCGTTCA
*
218482340 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCAC
*
218482379 AATGCCTTCGGGAC-TAACCCGGATTTAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
218482417 -ATGCCTTCGGG-CTTAG-CCGGA-TTAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * * * *
218482452 AAAGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCAC
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
218482492 AAAGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAT
218482517 ATCATTCGAA
Statistics
Matches: 122, Mismatches: 7, Indels: 17
0.84 0.05 0.12
Matches are distributed among these distances:
35 16 0.13
36 13 0.11
37 18 0.15
38 25 0.20
39 22 0.18
40 25 0.20
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:218482517 original size:40 final size:39
Alignment explanation
Indices: 218482319--218482518 Score: 216
Period size: 40 Copynumber: 5.2 Consensus size: 39
218482309 CGGAGTTTAA
** *
218482319 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAA-GCCTTCGGGACTTAGC
* * *
218482359 CCGGTTATAGTAACTCGCACAATGCCTTCGGGAC-TAAC
1 CCGGATATAGTAACTCGCACAAAGCCTTCGGGACTTAGC
* *
218482397 CCGGATTTAGTAACTCGCAC-ATGCCTTCGGG-CTTAG-
1 CCGGATATAGTAACTCGCACAAAGCCTTCGGGACTTAGC
*
218482433 CCGGAT-TAGTAACTCGCACAAAGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAAGCCTTCGGGA-CTTAGC
* *
218482471 CCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAAGCCTTCGGGACTTAGC
218482511 CCGGATAT
1 CCGGATAT
218482519 CATTCGAATA
Statistics
Matches: 139, Mismatches: 12, Indels: 18
0.82 0.07 0.11
Matches are distributed among these distances:
35 15 0.11
36 14 0.10
37 18 0.13
38 27 0.19
39 18 0.13
40 44 0.32
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAAGCCTTCGGGACTTAGC
Found at i:218490443 original size:39 final size:40
Alignment explanation
Indices: 218490369--218490552 Score: 252
Period size: 39 Copynumber: 4.7 Consensus size: 40
218490359 GCTACTCGTT
*
218490369 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
218490409 CAAATGCCTTCGGGAC-TAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
218490448 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
218490487 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
218490528 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
218490553 CATCATTCGA
Statistics
Matches: 131, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
38 3 0.02
39 69 0.53
40 48 0.37
41 11 0.08
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:218490469 original size:79 final size:80
Alignment explanation
Indices: 218490369--218490552 Score: 259
Period size: 79 Copynumber: 2.3 Consensus size: 80
218490359 GCTACTCGTT
* *
218490369 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-C-TAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
218490432 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
**
218490448 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
218490513 TATAGTCACTTAGCA
66 TATAGTAACTTAGCA
218490528 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
218490553 CATCATTCGA
Statistics
Matches: 95, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
77 3 0.03
78 24 0.25
79 60 0.63
80 8 0.08
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:218497794 original size:40 final size:40
Alignment explanation
Indices: 218497632--218497833 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
218497622 CGAATGATGT
*
218497632 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
218497672 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
218497711 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
218497749 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
218497790 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
218497830 CCGG
1 CCGG
218497834 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:218497796 original size:78 final size:79
Alignment explanation
Indices: 218497631--218497782 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
218497621 TCGAATGATG
* * *
218497631 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
218497696 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
218497711 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
218497774 GTGCAAGTC
65 GTGCAAGTC
218497783 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:218505693 original size:40 final size:40
Alignment explanation
Indices: 218505531--218505732 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
218505521 CGAATGATGT
*
218505531 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
218505571 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
218505610 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
218505648 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
218505689 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
218505729 CCGG
1 CCGG
218505733 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:218505695 original size:78 final size:79
Alignment explanation
Indices: 218505530--218505681 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
218505520 TCGAATGATG
* * *
218505530 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
218505595 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
218505610 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
218505673 GTGCAAGTC
65 GTGCAAGTC
218505682 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:218511648 original size:40 final size:40
Alignment explanation
Indices: 218511603--218511769 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
218511593 CGGAATATAA
218511603 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
218511643 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
218511683 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
218511723 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
218511762 CCGGATAT
1 CCGGATAT
218511770 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:218519641 original size:40 final size:40
Alignment explanation
Indices: 218519596--218519761 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
218519586 CGGAATATAA
218519596 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
218519636 CCGGATAGAAT-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
218519675 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
218519715 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
218519754 CCGGATAT
1 CCGGATAT
218519762 CATTCAATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
38 1 0.01
39 46 0.43
40 60 0.56
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:218519660 original size:39 final size:39
Alignment explanation
Indices: 218519612--218519721 Score: 141
Period size: 39 Copynumber: 2.8 Consensus size: 39
218519602 ATAATCACGT
* *
218519612 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGA-ATACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
* *
218519651 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
*
218519691 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
218519722 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 33 0.52
40 30 0.48
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
Found at i:218522874 original size:40 final size:39
Alignment explanation
Indices: 218522783--218522890 Score: 121
Period size: 40 Copynumber: 2.7 Consensus size: 39
218522773 GATATAACAT
* *
218522783 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
218522823 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
*
218522863 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
218522891 TATATAATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 55 0.92
ACGTcount: A:0.20, C:0.30, G:0.26, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:218530785 original size:40 final size:40
Alignment explanation
Indices: 218530740--218530907 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
218530730 CGGAATATAA
218530740 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
218530780 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
218530820 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
218530860 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
218530900 CCGGATAT
1 CCGGATAT
218530908 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:218530890 original size:80 final size:80
Alignment explanation
Indices: 218530756--218530905 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
218530746 ATAACCACGT
* *
218530756 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
218530821 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
218530836 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
218530899 CCCGGAT
64 CCCGGAT
218530906 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:218534394 original size:40 final size:40
Alignment explanation
Indices: 218534350--218534530 Score: 229
Period size: 40 Copynumber: 4.5 Consensus size: 40
218534340 CAAGCACAAT
* *** * *
218534350 TGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACCAA
1 TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAA
* *
218534390 TGCCTTCGAGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAA
218534430 TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAA
* * **
218534470 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATTTAA-CAACTCGCACGAA
*
218534510 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
218534531 GTTTCATTCA
Statistics
Matches: 125, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 124 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAA
Found at i:218534472 original size:80 final size:78
Alignment explanation
Indices: 218534327--218534530 Score: 255
Period size: 80 Copynumber: 2.5 Consensus size: 78
218534317 CGGAATCTAA
* * *** *
218534327 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACCAATG
1 CCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACCAATG
218534392 CCTTCGAGTCTTAGC
64 CCTTCGAGTCTTAGC
* *
218534407 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAATG
1 CCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACCAATG
*
218534472 CCTTCGGGTCTTAGC
64 CCTTCGAGTCTTAGC
* *
218534487 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
218534531 GTTTCATTCA
Statistics
Matches: 108, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
79 1 0.01
80 104 0.96
81 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (78 bp):
CCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACCAATGCC
TTCGAGTCTTAGC
Found at i:218538426 original size:28 final size:29
Alignment explanation
Indices: 218538394--218538492 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
218538384 ATAATAAGCC
*
218538394 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
218538422 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
218538450 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
218538479 CGCACACTTAGTGC
1 CGCACACTTAGTGC
218538493 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:218546433 original size:28 final size:29
Alignment explanation
Indices: 218546401--218546499 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
218546391 ATAATAAGCC
*
218546401 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
218546429 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
218546457 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
218546486 CGCACACTTAGTGC
1 CGCACACTTAGTGC
218546500 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:218549819 original size:40 final size:40
Alignment explanation
Indices: 218549774--218549902 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
218549764 CGGAATACAA
218549774 CGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGCC
* ** *
218549814 CGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 CGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGCC
* * *
218549854 CGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAACC
1 CGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGCC
218549894 CGGATATAA
1 CGGATATAA
218549903 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGCC
Found at i:218549917 original size:40 final size:40
Alignment explanation
Indices: 218549774--218549936 Score: 143
Period size: 40 Copynumber: 4.1 Consensus size: 40
218549764 CGGAATACAA
* **
218549774 CGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGCC
1 CGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGCC
* *
218549814 CGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGCC
1 CGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGCC
* ** * *
218549854 CGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGCC
** * * *
218549894 CGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGCC
1 CGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGCC
218549934 CGG
1 CGG
218549937 TATCATTCAA
Statistics
Matches: 99, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 97 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGCC
Found at i:218557821 original size:40 final size:40
Alignment explanation
Indices: 218557776--218557905 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
218557766 CGGAATACAA
218557776 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
218557816 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
218557856 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
218557896 CCGGATATAA
1 CCGGATATAA
218557906 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:218557920 original size:40 final size:40
Alignment explanation
Indices: 218557776--218557939 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
218557766 CGGAATACAA
* **
218557776 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
218557816 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
218557856 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
218557896 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
218557936 CCGG
1 CCGG
218557940 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:218564599 original size:21 final size:21
Alignment explanation
Indices: 218564559--218564599 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
218564549 CTCTGCAGTG
*
218564559 TTGAAAATTTTCATTATTTTT
1 TTGAAAATTTTCATAATTTTT
*
218564580 TTGAAAATTTTC-TAAGTTTT
1 TTGAAAATTTTCATAATTTTT
218564600 CAATTTAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (21 bp):
TTGAAAATTTTCATAATTTTT
Found at i:218567655 original size:132 final size:132
Alignment explanation
Indices: 218567418--218567658 Score: 349
Period size: 132 Copynumber: 1.8 Consensus size: 132
218567408 TGTCATGAAC
** * ** *
218567418 CTTCATCTATCCTAACAAAGATGAAATTGTTTTTCTTATGGTGTATGCACTCCAATTATAAGGTC
1 CTTCATCTATCCTAACAAAGACAAAATTGTTTTTATTACAGTGTATGCACTCCAATTATAAGGTA
** *
218567483 AATTGTTTCTGTACCGTTTTACATGTTCCCTGGCCACTCATACTCGCCCTATTCGGTTCATAACG
66 AATTGTTTCTGTACCGTTTTACATACTCCCTAGCCACTCATACTCGCCCTATTCGGTTCATAACG
218567548 AA
131 AA
*
218567550 CTTCATCTATCCTAACAAAGACAAAATTGTTTTTATTACAGTGTATGCACTCCGATTATAAGGTA
1 CTTCATCTATCCTAACAAAGACAAAATTGTTTTTATTACAGTGTATGCACTCCAATTATAAGGTA
* * *
218567615 AATTGTTTTTTTACTGTTTTACATACTCACC-AGCCACTCATACT
66 AATTGTTTCTGTACCGTTTTACATACTC-CCTAGCCACTCATACT
218567659 AGACCTATAT
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
132 93 0.98
133 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.38
Consensus pattern (132 bp):
CTTCATCTATCCTAACAAAGACAAAATTGTTTTTATTACAGTGTATGCACTCCAATTATAAGGTA
AATTGTTTCTGTACCGTTTTACATACTCCCTAGCCACTCATACTCGCCCTATTCGGTTCATAACG
AA
Found at i:218568761 original size:31 final size:31
Alignment explanation
Indices: 218568725--218568783 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
218568715 TTGGGAAAAA
* *
218568725 TTATTGAATCGTTTCTAGTATGGGAGTGGAC
1 TTATTGAATCGCTTCTAGTAAGGGAGTGGAC
*
218568756 TTATTGATTCGCTTCTAGTAAGGGAGTG
1 TTATTGAATCGCTTCTAGTAAGGGAGTG
218568784 CACAACATGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.22, C:0.10, G:0.29, T:0.39
Consensus pattern (31 bp):
TTATTGAATCGCTTCTAGTAAGGGAGTGGAC
Found at i:218571579 original size:40 final size:40
Alignment explanation
Indices: 218571534--218571700 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
218571524 CGGAATATAA
218571534 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
218571574 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
218571614 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
218571654 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
218571693 CCGGATAT
1 CCGGATAT
218571701 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:218571684 original size:80 final size:79
Alignment explanation
Indices: 218571534--218571700 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
218571524 CGGAATATAA
* *
218571534 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
218571599 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
218571614 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
218571676 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
218571693 CCGGATAT
1 CCGGATAT
218571701 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:218572547 original size:17 final size:19
Alignment explanation
Indices: 218572524--218572569 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
218572514 AAGAAGCATG
218572524 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
218572542 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
218572560 AATCATGCTC
1 AATCATGCTC
218572570 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:218576591 original size:20 final size:20
Alignment explanation
Indices: 218576563--218576604 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
218576553 TGAACACTTT
*
218576563 TCTTCCTTTCTTTTTTTTTC
1 TCTTCCTTTCTTTTTGTTTC
* *
218576583 TCTTTCTTTGTTTTTGTTTC
1 TCTTCCTTTCTTTTTGTTTC
218576603 TC
1 TC
218576605 ATGTACGGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74
Consensus pattern (20 bp):
TCTTCCTTTCTTTTTGTTTC
Found at i:218583334 original size:40 final size:40
Alignment explanation
Indices: 218583184--218583351 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
218583174 CGGAATACAA
* * *
218583184 CCGGATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGC
* ** *
218583224 CCGGATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
218583264 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
** * * *
218583304 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
218583344 CCGGATAT
1 CCGGATAT
218583352 CATTCAATTG
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAAATGCCTTCGGGTCTTAGC
Found at i:218585068 original size:32 final size:33
Alignment explanation
Indices: 218585008--218585073 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
218584998 CTCGGTTTAG
218585008 TGGTCCCGACACCACTTTCCGACTAAGGTCAAA
1 TGGTCCCGACACCACTTTCCGACTAAGGTCAAA
218585041 TGGTCCCGACACCACTTT-CGACTAAGGTCAAA
1 TGGTCCCGACACCACTTTCCGACTAAGGTCAAA
218585073 T
1 T
218585074 TAGGGATGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 15 0.45
33 18 0.55
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (33 bp):
TGGTCCCGACACCACTTTCCGACTAAGGTCAAA
Found at i:218589808 original size:39 final size:40
Alignment explanation
Indices: 218589693--218589836 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
218589683 TCGTTCAAAC
* * ** * **
218589693 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
* * * *
218589733 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
218589773 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
218589812 GCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGACTTAGCCCGGATATCA
218589837 CTCGAACATT
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
Found at i:218592186 original size:29 final size:28
Alignment explanation
Indices: 218592153--218592225 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
218592143 CCTTCGAGCT
218592153 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATAT-TTTCCAGCA
*
218592182 TGCACACTTAGTGCCATATTTTCCAGCA
1 CGCACACTTAGTGCCATATTTTCCAGCA
218592210 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
218592226 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATTTTCCAGCA
Found at i:218592214 original size:28 final size:29
Alignment explanation
Indices: 218592095--218592225 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
218592085 TACTCGATTT
** * *
218592095 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
218592124 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
218592153 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
218592182 TGCACACTTAGTGCCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
218592210 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
218592226 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
28 26 0.31
29 59 0.69
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:218599908 original size:29 final size:28
Alignment explanation
Indices: 218599875--218599947 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
218599865 CCTTCGAGCT
218599875 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATAT-TTTCCAGCA
*
218599904 TGCACACTTAGTGCCATATTTTCCAGCA
1 CGCACACTTAGTGCCATATTTTCCAGCA
218599932 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
218599948 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATTTTCCAGCA
Found at i:218599936 original size:28 final size:29
Alignment explanation
Indices: 218599817--218599947 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
218599807 TACTCGATTT
** * *
218599817 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
218599846 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
218599875 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
218599904 TGCACACTTAGTGCCATAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
218599932 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
218599948 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
28 26 0.31
29 59 0.69
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:218603055 original size:24 final size:23
Alignment explanation
Indices: 218603023--218603131 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
218603013 ACCAAACGTT
* **
218603023 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
218603047 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
218603071 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
218603095 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
218603119 GCACACATAGTGC
1 GCACACATAGTGC
218603132 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:218603097 original size:48 final size:48
Alignment explanation
Indices: 218603023--218603131 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
218603013 ACCAAACGTT
* **
218603023 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
218603071 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
218603119 GCACACATAGTGC
1 GCACACATAGTGC
218603132 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:218610828 original size:24 final size:22
Alignment explanation
Indices: 218610796--218610904 Score: 101
Period size: 24 Copynumber: 4.6 Consensus size: 22
218610786 ACCAAACGTT
*
218610796 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-G-TC
* *
218610820 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGT-AGTC
218610844 GCACACATAGTGCTATAGTAAGTC
1 GCACACATAGTGCT-TAGT-AGTC
* *
218610868 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGT-AGTC
218610892 GCACACATAGTGC
1 GCACACATAGTGC
218610905 ATTTGAGATT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
23 2 0.03
24 66 0.89
25 5 0.07
26 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (22 bp):
GCACACATAGTGCTTAGTAGTC
Found at i:218610870 original size:48 final size:48
Alignment explanation
Indices: 218610796--218610904 Score: 184
Period size: 48 Copynumber: 2.3 Consensus size: 48
218610786 ACCAAACGTT
* *
218610796 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTAAGTTCGCACACATAGTGCCATAGTAAATC
218610844 GCACACATAGTGCTATAGTAAG-TCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTAAGTTCGCACACATAGTGCCATAGTAAATC
218610892 GCACACATAGTGC
1 GCACACATAGTGC
218610905 ATTTGAGATT
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
48 53 0.91
49 5 0.09
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTAAGTTCGCACACATAGTGCCATAGTAAATC
Found at i:218616596 original size:40 final size:40
Alignment explanation
Indices: 218616536--218616793 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
218616526 CGGATGATAA
* * *
218616536 CCGGCCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
218616576 TCGGGCTAAGCCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
218616616 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
218616656 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
218616696 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
218616736 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
218616776 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
218616794 TACTTGGTTT
Statistics
Matches: 197, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 17 0.09
40 179 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:218621929 original size:46 final size:46
Alignment explanation
Indices: 218621754--218621929 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
218621744 ATGTAACCCC
* * *
218621754 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
218621800 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GA-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
218621846 ACATCTCTCGAGCTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
218621893 CCATAAGTGAACTCGGACTCAGCTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
218621930 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.61
47 29 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:218627292 original size:93 final size:93
Alignment explanation
Indices: 218627180--218627350 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
218627170 GCCCATAAGT
* *
218627180 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
218627245 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
218627273 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
218627338 CGAGTTCGGATGC
66 CGAGCTCGGATGC
218627351 AACCATCCTA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:218627347 original size:46 final size:46
Alignment explanation
Indices: 218627172--218627347 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
218627162 TGTAACCCGC
* *
218627172 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
218627218 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
218627264 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
218627311 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
218627348 TGCAACCATC
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:218630482 original size:19 final size:20
Alignment explanation
Indices: 218630458--218630496 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
218630448 TTTGGATAAC
218630458 TTTTTGAAAA-ACATATTAA
1 TTTTTGAAAACACATATTAA
*
218630477 TTTTTGAAAACACATCTTAA
1 TTTTTGAAAACACATATTAA
218630497 ACAGTTTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (20 bp):
TTTTTGAAAACACATATTAA
Found at i:218634748 original size:40 final size:40
Alignment explanation
Indices: 218634703--218634832 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
218634693 GACTAGCTCA
*
218634703 AATGCCTTCGGGAC-AAACCCCGGTTATAGTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCCGGTT-TAGTAACTCGCACG
* * * *
218634743 AATGCCTTCGGGACTTAACTCGGGTTTAGTAACTTGCACA
1 AATGCCTTCGGGACTTAACCCCGGTTTAGTAACTCGCACG
*
218634783 AATGCCTTCGGG-CTTAA-CCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCCGG-TTTAGTAACTCGCACG
*
218634822 AACGCCTTCGG
1 AATGCCTTCGG
218634833 ATCTTAGTCC
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 3 0.04
39 28 0.36
40 38 0.49
41 8 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCCGGTTTAGTAACTCGCACG
Found at i:218638715 original size:29 final size:29
Alignment explanation
Indices: 218638687--218638817 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
218638677 CCTCCGAGCT
** * *
218638687 CGCACACCCAGTGCCGTATTTTTCCAGC-
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
218638715 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
218638744 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
218638773 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
218638802 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
218638818 ATCTCGTCAC
Statistics
Matches: 96, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
28 23 0.24
29 73 0.76
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:218638748 original size:86 final size:87
Alignment explanation
Indices: 218638658--218638817 Score: 198
Period size: 86 Copynumber: 1.9 Consensus size: 87
218638648 AATTTAAGCC
* * * * *
218638658 CGCACACACAGTGCCATA-CCCTCCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGC-TGCACA
1 CGCACACACAGTGCCATATACCTCC-AGCACGCACACCCAGTGCCATATATTTCCAGCACGCACA
218638721 CTTAGTGCCATATATTTCCAGCA
65 CTTAGTGCCATATATTTCCAGCA
** ** **
218638744 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACACAGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
218638809 TTAGTGCCA
66 TTAGTGCCA
218638818 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
86 43 0.70
87 18 0.30
ACGTcount: A:0.25, C:0.35, G:0.16, T:0.24
Consensus pattern (87 bp):
CGCACACACAGTGCCATATACCTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
TTAGTGCCATATATTTCCAGCA
Found at i:218646560 original size:29 final size:29
Alignment explanation
Indices: 218646532--218646633 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
218646522 CCTCCGAGCT
** * * *
218646532 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
218646561 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
218646590 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
218646619 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
218646634 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:218654425 original size:30 final size:29
Alignment explanation
Indices: 218654315--218654503 Score: 210
Period size: 29 Copynumber: 6.6 Consensus size: 29
218654305 TACTCGATTT
218654315 CGCACACTTAGTGCCACGTA-ATTT--AGC-
1 CGCACACTTAGTGCCA--TATATTTCCAGCA
** *** *
218654342 CGCACACACAGTGCCATACCCTTCCGAGCT
1 CGCACACTTAGTGCCATATATTTCC-AGCA
* *
218654372 CGCACAC-CAGTGCCGTAT-TTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
218654399 TTGCACACTTAGTGCCATATATTTCCAGCA
1 -CGCACACTTAGTGCCATATATTTCCAGCA
218654429 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
218654458 GCGCACACTTAGTGCCATATATTTCCAGCA
1 -CGCACACTTAGTGCCATATATTTCCAGCA
218654488 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
218654504 ATCTCGTCAC
Statistics
Matches: 141, Mismatches: 12, Indels: 16
0.83 0.07 0.09
Matches are distributed among these distances:
25 2 0.01
26 2 0.01
27 17 0.12
28 10 0.07
29 65 0.46
30 45 0.32
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:218654465 original size:59 final size:58
Alignment explanation
Indices: 218654363--218654503 Score: 212
Period size: 59 Copynumber: 2.4 Consensus size: 58
218654353 TGCCATACCC
* * * **
218654363 TTCCGAGCTCGCACAC-CAGTGCCGTATTTTCCAGCATTGCACACTTAGTGCCATATAT
1 TTCC-AGCACGCACACTTAGTGCCATATTTTCCAGCAGCGCACACTTAGTGCCATATAT
218654421 TTCCAGCACGCACACTTAGTGCCATATATTTCCAGCAGCGCACACTTAGTGCCATATAT
1 TTCCAGCACGCACACTTAGTGCCATAT-TTTCCAGCAGCGCACACTTAGTGCCATATAT
218654480 TTCCAGCACGCACACTTAGTGCCA
1 TTCCAGCACGCACACTTAGTGCCA
218654504 ATCTCGTCAC
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
57 10 0.13
58 13 0.17
59 53 0.70
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (58 bp):
TTCCAGCACGCACACTTAGTGCCATATTTTCCAGCAGCGCACACTTAGTGCCATATAT
Found at i:218657443 original size:40 final size:40
Alignment explanation
Indices: 218657398--218657564 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
218657388 CGGAATATAA
218657398 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
218657438 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
218657478 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
218657518 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
218657557 CCGGATAT
1 CCGGATAT
218657565 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:218657548 original size:80 final size:79
Alignment explanation
Indices: 218657398--218657564 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
218657388 CGGAATATAA
* *
218657398 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
218657463 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
218657478 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
218657540 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
218657557 CCGGATAT
1 CCGGATAT
218657565 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:218658413 original size:17 final size:19
Alignment explanation
Indices: 218658390--218658435 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
218658380 AAGAAGCATG
218658390 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
218658408 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
218658426 AATCATGCTC
1 AATCATGCTC
218658436 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:218665445 original size:40 final size:40
Alignment explanation
Indices: 218665400--218665566 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
218665390 CGGAATATAA
218665400 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
218665440 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
218665480 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
218665520 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
218665559 CCGGATAT
1 CCGGATAT
218665567 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:218665550 original size:80 final size:79
Alignment explanation
Indices: 218665400--218665566 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
218665390 CGGAATATAA
* *
218665400 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
218665465 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
218665480 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
218665542 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
218665559 CCGGATAT
1 CCGGATAT
218665567 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:218666415 original size:17 final size:19
Alignment explanation
Indices: 218666392--218666437 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
218666382 AAGAAGCATG
218666392 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
218666410 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
218666428 AATCATGCTC
1 AATCATGCTC
218666438 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:218672169 original size:71 final size:71
Alignment explanation
Indices: 218672085--218672248 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
218672075 CGATTTGTCT
218672085 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
218672150 CTTTCA
66 CTTTCA
218672156 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
218672221 CTTTCA
66 CTTTCA
218672227 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
218672249 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:218672286 original size:71 final size:70
Alignment explanation
Indices: 218672085--218672282 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
218672075 CGATTTGTCT
* * * *
218672085 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
218672150 CTTTCA
65 CTTTCA
* * * *
218672156 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
218672221 CTTTCA
65 CTTTCA
* *
218672227 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
218672283 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:218679743 original size:71 final size:71
Alignment explanation
Indices: 218679659--218679822 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
218679649 CGATTTGTCT
218679659 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
218679724 CTTTCA
66 CTTTCA
218679730 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
218679795 CTTTCA
66 CTTTCA
218679801 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
218679823 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:218679860 original size:71 final size:70
Alignment explanation
Indices: 218679659--218679856 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
218679649 CGATTTGTCT
* * * *
218679659 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
218679724 CTTTCA
65 CTTTCA
* * * *
218679730 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
218679795 CTTTCA
65 CTTTCA
* *
218679801 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
218679857 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:218684443 original size:39 final size:40
Alignment explanation
Indices: 218684320--218684485 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
218684310 AAATTGAATG
* * *
218684320 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
218684359 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
218684399 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
218684438 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
218684478 ATATCCGG
1 ATATCCGG
218684486 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:218684452 original size:79 final size:79
Alignment explanation
Indices: 218684320--218684469 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
218684310 AAATTGAATG
*
218684320 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
218684385 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
218684399 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
218684462 ATTTGTGC
64 AATTGTGC
218684470 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:218692388 original size:40 final size:40
Alignment explanation
Indices: 218692322--218692488 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
218692312 AAATTGAATG
* * *
218692322 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
218692361 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
218692401 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
218692441 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
218692481 ATATCCGG
1 ATATCCGG
218692489 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:218698682 original size:40 final size:40
Alignment explanation
Indices: 218698625--218698771 Score: 156
Period size: 40 Copynumber: 3.7 Consensus size: 40
218698615 TCGAATGATG
* *
218698625 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AAGTGACCAAA
* **
218698665 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACCAAA
* **
218698705 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACCAAA
**
218698745 TCCGGGTTAAG-TCCCGAAGGCATTTGT
1 TCCGGACTAAGAT-CCGAAGGCATTTGT
218698772 ACGAGCTATT
Statistics
Matches: 97, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 88 0.91
41 8 0.08
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTGACCAAA
Found at i:218706787 original size:40 final size:40
Alignment explanation
Indices: 218706704--218706856 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
218706694 TCGAATGATG
* *
218706704 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
218706744 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* * **
218706784 TCCGGGTTACGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
218706825 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
218706857 CGCTATATCC
Statistics
Matches: 93, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
39 2 0.02
40 80 0.86
41 11 0.12
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:218723197 original size:40 final size:40
Alignment explanation
Indices: 218723152--218723318 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
218723142 CGGAATATAA
218723152 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
218723192 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
218723232 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
218723272 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
218723311 CCGGATAT
1 CCGGATAT
218723319 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:218731168 original size:40 final size:40
Alignment explanation
Indices: 218731123--218731289 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
218731113 CGGAATATAA
218731123 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
218731163 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
218731203 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
218731243 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
218731282 CCGGATAT
1 CCGGATAT
218731290 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:218732134 original size:17 final size:19
Alignment explanation
Indices: 218732111--218732156 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
218732101 AAGAAGCATG
218732111 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
218732129 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
218732147 AATCATGCTC
1 AATCATGCTC
218732157 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:218733822 original size:46 final size:46
Alignment explanation
Indices: 218733772--218733947 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
218733762 TGGTTGAGCA
218733772 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
218733818 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
218733863 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
218733911 CCCGAGCTTGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
218733948 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.58
47 29 0.27
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:218733928 original size:93 final size:93
Alignment explanation
Indices: 218733769--218733940 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
218733759 GGATGGTTGA
* * *
218733769 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
218733834 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
218733862 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
*
218733927 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
218733941 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:218737683 original size:40 final size:40
Alignment explanation
Indices: 218737617--218737720 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
218737607 AAATTGAATG
* * *
218737617 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
218737656 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
218737696 ATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
218737721 TTCGTGCGAG
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
39 13 0.24
40 42 0.76
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:218745613 original size:40 final size:39
Alignment explanation
Indices: 218745547--218745697 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
218745537 AAATTGAATG
* * *
218745547 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
218745586 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
218745626 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
218745666 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
218745698 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:218745711 original size:40 final size:39
Alignment explanation
Indices: 218745584--218745713 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
218745574 ATGCTGGAAA
* *
218745584 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
218745624 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
218745664 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
218745704 TTATATCCGG
1 TTATATCCGG
218745714 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:218750578 original size:32 final size:32
Alignment explanation
Indices: 218750537--218750599 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
218750527 AGTAAGAAGT
218750537 GAGGGAAAATAGTACTCTTTCAAGGGATAGAC
1 GAGGGAAAATAGTACTCTTTCAAGGGATAGAC
218750569 GAGGGAAAATAGTACTCTTTCAAGGGATAGA
1 GAGGGAAAATAGTACTCTTTCAAGGGATAGA
218750600 TCACAGAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.22
Consensus pattern (32 bp):
GAGGGAAAATAGTACTCTTTCAAGGGATAGAC
Found at i:218750609 original size:32 final size:32
Alignment explanation
Indices: 218750541--218750609 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
218750531 AGAAGTGAGG
**
218750541 GAAAATAGTACTCTTTCAAGGGATAGACGAGG
1 GAAAATAGTACTCTTTCAAGGGATAGACGACA
218750573 GAAAATAGTACTCTTTCAAGGGATAGATC-ACA
1 GAAAATAGTACTCTTTCAAGGGATAGA-CGACA
218750605 GAAAA
1 GAAAA
218750610 ACCTGGGCAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 33 0.97
33 1 0.03
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (32 bp):
GAAAATAGTACTCTTTCAAGGGATAGACGACA
Found at i:218753248 original size:29 final size:29
Alignment explanation
Indices: 218753215--218753346 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
218753205 CCTCCGAACT
** * * *
218753215 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
218753244 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
218753273 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
218753302 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
218753331 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
218753347 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:218761303 original size:29 final size:29
Alignment explanation
Indices: 218761269--218761420 Score: 243
Period size: 29 Copynumber: 5.2 Consensus size: 29
218761259 CGCACACACC
* * **
218761269 AGTGCCGTATTTTTCCAGCTTGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTT
*
218761298 AGTGCCAAATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTT
218761327 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTT
218761356 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTT
218761385 AGTGCCATATATATTCCAGCACGCAC-CTT
1 AGTGCCATATAT-TTCCAGCACGCACACTT
218761414 AGTGCCA
1 AGTGCCA
218761421 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
29 103 0.89
30 13 0.11
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCACGCACACTT
Found at i:218761322 original size:88 final size:87
Alignment explanation
Indices: 218761201--218761410 Score: 199
Period size: 88 Copynumber: 2.4 Consensus size: 87
218761191 CACTCGATTT
** * * * *
218761201 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAATGCCATA-CCCTCCGAACTCGCAC
1 CGCACACTTAGTGCCAAAT-ATTTCCAGCACGCACACACAATGCCATATACCTCC-AACACGCAC
* * *
218761264 ACACCAGTGCCGTATTTTTCCAGCT
64 AC-CCAGTGCCATATATTTCCAGCA
* ** * ** *
218761289 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACACAATGCCATATACCTCCAACACGCACAC
**
218761354 TTAGTGCCATATATTTCCAGCA
66 CCAGTGCCATATATTTCCAGCA
*
218761376 CGCACACTTAGTGCCATATATATTCCAGCACGCAC
1 CGCACACTTAGTGCCAAATAT-TTCCAGCACGCAC
218761411 CTTAGTGCCA
Statistics
Matches: 99, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
87 40 0.40
88 56 0.57
89 3 0.03
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCAAATATTTCCAGCACGCACACACAATGCCATATACCTCCAACACGCACAC
CCAGTGCCATATATTTCCAGCA
Found at i:218764102 original size:30 final size:29
Alignment explanation
Indices: 218764008--218764109 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
218763998 TATAGTGAAT
* * *
218764008 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
218764037 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
218764065 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
218764095 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
218764110 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:218771956 original size:30 final size:29
Alignment explanation
Indices: 218771862--218771963 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
218771852 TATAGTGAAT
* * *
218771862 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
218771891 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
218771919 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
218771949 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
218771964 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:218779806 original size:30 final size:29
Alignment explanation
Indices: 218779712--218779813 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
218779702 TATAGTGAAT
* * *
218779712 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
218779741 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
218779769 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
218779799 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
218779814 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:218787646 original size:30 final size:29
Alignment explanation
Indices: 218787552--218787653 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
218787542 TATAGTGAAT
* * *
218787552 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
218787581 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
218787609 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
218787639 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
218787654 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:218787787 original size:16 final size:17
Alignment explanation
Indices: 218787755--218787787 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
218787745 CATCATTCCA
*
218787755 TACACATACATTTCATT
1 TACACATACAATTCATT
218787772 TACACAT-CAATTCATT
1 TACACATACAATTCATT
218787788 AAACACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.39
Consensus pattern (17 bp):
TACACATACAATTCATT
Found at i:218795153 original size:29 final size:27
Alignment explanation
Indices: 218795119--218795221 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
218795109 TACTCAATCA
*
218795119 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
218795148 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
218795177 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
218795206 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
218795222 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:218807224 original size:40 final size:40
Alignment explanation
Indices: 218807152--218807353 Score: 239
Period size: 40 Copynumber: 5.1 Consensus size: 40
218807142 TGAATGATAC
* *
218807152 CCGGGCTAAGTCCCGAA-GCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
218807191 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
218807231 -CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
218807270 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
218807310 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
218807350 CCGG
1 CCGG
218807354 TAAATTCCGA
Statistics
Matches: 140, Mismatches: 19, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
39 50 0.36
40 90 0.64
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:218807285 original size:79 final size:79
Alignment explanation
Indices: 218807152--218807353 Score: 230
Period size: 79 Copynumber: 2.5 Consensus size: 79
218807142 TGAATGATAC
* * *
218807152 CCGGGCTAAGTCCCGAA-GCATTTATGCTAG-TGATTATATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
* ** *
218807215 ATGCTAGTGATTATAT
64 ATGCAAGTGACCAAAT
* *
218807231 -CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTA
*
218807295 TGCAAGTTACCAAAT
65 TGCAAGTGACCAAAT
* * *
218807310 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGG
218807354 TAAATTCCGA
Statistics
Matches: 104, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
78 17 0.16
79 47 0.45
80 37 0.36
81 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTAT
GCAAGTGACCAAAT
Found at i:218816664 original size:30 final size:30
Alignment explanation
Indices: 218816609--218816768 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
218816599 ATAGTGAATC
218816609 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
218816638 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
218816668 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
218816697 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
218816725 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
218816755 CGCACACTTAGTGC
1 CGCACACTTAGTGC
218816769 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:218816701 original size:59 final size:57
Alignment explanation
Indices: 218816609--218816768 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
218816599 ATAGTGAATC
*
218816609 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
218816668 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
218816725 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
218816769 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:218821041 original size:40 final size:40
Alignment explanation
Indices: 218820817--218821013 Score: 285
Period size: 40 Copynumber: 5.0 Consensus size: 40
218820807 TCGAATGATG
* * *
218820817 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACT-AA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
218820856 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
218820896 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
218820936 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
218820976 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
218821014 TAACCGGGCT
Statistics
Matches: 148, Mismatches: 6, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 25 0.17
40 123 0.83
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:218821055 original size:40 final size:40
Alignment explanation
Indices: 218820818--218821060 Score: 137
Period size: 40 Copynumber: 6.1 Consensus size: 40
218820808 CGAATGATGT
** * *
218820818 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGCT-ACTATAA
* ** *
218820857 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* ** *
218820896 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 -CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* ** *
218820936 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 -CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* **
218820976 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
* * *
218821017 CCGGGCTATGTCCCGAAGGTATTTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTA-CTATAA
218821057 CCGG
1 CCGG
218821061 TTAAACTCCG
Statistics
Matches: 185, Mismatches: 12, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 27 0.15
40 156 0.84
41 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
Found at i:218821059 original size:80 final size:79
Alignment explanation
Indices: 218820824--218821064 Score: 262
Period size: 80 Copynumber: 3.0 Consensus size: 79
218820814 ATGTCCGGGC
* **
218820824 TAAGTCCCGAAGGC-TTTGTGCTAAG-TGACT-AATCCGGACTAAGATCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACG
*
218820886 AGTTACTAAATCCGGAC
64 AGTTACTAAATCCGG-T
* **
218820903 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGA
218820967 GTTACTAAATCCGGGT
65 GTTACTAAATCC-GGT
* * *
218820983 TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACG
1 TAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACG
*
218821046 AG-TAGCTATATCCGGT
64 AGTTA-CTAAATCCGGT
218821062 TAA
1 TAA
218821065 ACTCCGAAGG
Statistics
Matches: 144, Mismatches: 9, Indels: 18
0.84 0.05 0.11
Matches are distributed among these distances:
79 27 0.19
80 113 0.78
81 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG
TTACTAAATCCGGT
Found at i:218821060 original size:120 final size:119
Alignment explanation
Indices: 218820817--218821048 Score: 276
Period size: 120 Copynumber: 1.9 Consensus size: 119
218820807 TCGAATGATG
*
218820817 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTG
* **
218820882 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66 TGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
* * **
218820936 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACT-AATCCGGACTAAGAT-CCGAAGGCA
* * *
218820998 TTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGT
62 TTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
218821049 AGCTATATCC
Statistics
Matches: 96, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
119 26 0.27
120 68 0.71
121 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:218828991 original size:40 final size:40
Alignment explanation
Indices: 218828897--218829041 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 40
218828887 TACTCGAATG
*
218828897 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
218828938 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
218828978 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
218829018 ATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
218829042 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 64 0.68
41 28 0.30
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:218832272 original size:29 final size:29
Alignment explanation
Indices: 218832178--218832250 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
218832168 GTGACGAGAT
218832178 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
218832207 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
218832236 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
218832251 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:218832346 original size:2 final size:2
Alignment explanation
Indices: 218832341--218832365 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
218832331 GTGTGCGTAC
218832341 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
218832366 TCCGATCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:218840208 original size:29 final size:29
Alignment explanation
Indices: 218840114--218840186 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
218840104 GTGACGAGAT
218840114 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
218840143 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
218840172 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
218840187 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:218840282 original size:2 final size:2
Alignment explanation
Indices: 218840277--218840303 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
218840267 GTGTGCGTAC
218840277 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
218840304 CCATCGAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:218844729 original size:17 final size:18
Alignment explanation
Indices: 218844707--218844746 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
218844697 TGTCATATTA
218844707 TTTTTTG-TATCATATAT
1 TTTTTTGCTATCATATAT
218844724 TTTTTTGTCCTATCATATAT
1 TTTTTTG--CTATCATATAT
218844744 TTT
1 TTT
218844747 GTTAACTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
20 13 0.65
ACGTcount: A:0.20, C:0.10, G:0.05, T:0.65
Consensus pattern (18 bp):
TTTTTTGCTATCATATAT
Found at i:218845530 original size:131 final size:132
Alignment explanation
Indices: 218845283--218845533 Score: 380
Period size: 131 Copynumber: 1.9 Consensus size: 132
218845273 TCATTCATTC
** *
218845283 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * **
218845348 TTGGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAATATCACTTTGAAATTTCACTCGCGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCGCGTCTT
218845413 TT
131 TT
218845415 AAAA-TTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * *
218845479 TTGGGTTGCAATTTTGCGTTTG-TCCAAAGTAATCGAGCATCCCTTCAAAATTTCA
66 TTGGGTTGCAATTTCGCGTTTGCT-CAAAATAATCGAACATCACTTCAAAATTTCA
218845534 TTCATGTCTT
Statistics
Matches: 107, Mismatches: 11, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
130 1 0.01
131 102 0.95
132 4 0.04
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (132 bp):
AAAAGTTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCGCGTCTT
TT
Found at i:218845543 original size:131 final size:132
Alignment explanation
Indices: 218845283--218845564 Score: 379
Period size: 131 Copynumber: 2.1 Consensus size: 132
218845273 TCATTCATTC
* ** *
218845283 AAAAGTTCTTCAAAACGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * ** *
218845348 TTGGGTTGCAATTTCGTGTTTGCTCAAAATAATCGAATATCACTTTGAAATTTCACTCGCGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT
218845413 -T
131 CT
*
218845414 TAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
* * * * * *
218845479 TTGGGTTGCAATTTTGCGTTTG-TCCAAAGTAATCGAGCATCCCTTCAAAATTTCATTCATGTCT
66 TTGGGTTGCAATTTCGCGTTTGCT-CAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCT
218845543 TCT
130 TCT
* *
218845546 AAAAATTATTTAAAACGAA
1 AAAAATTCTTCAAAACGAA
218845565 AGCTATATTC
Statistics
Matches: 130, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
130 1 0.01
131 112 0.86
132 17 0.13
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCGATACTTAGCAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT
CT
Found at i:218845596 original size:131 final size:131
Alignment explanation
Indices: 218845291--218845638 Score: 348
Period size: 131 Copynumber: 2.7 Consensus size: 131
218845281 TCAAAAGTTC
*
218845291 TTCAAAACGAAGACGAGATTCG-ATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACGAAGACGAGATTCGAACGTTT-GCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
* * ** * *
218845355 GCAATTTCGTGTTTGCTCAAAATAATCGAATATCACTTTGAAATTTCACTCGCGTCTTTTAAAAT
65 GCAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTTTAAAAAT
*
218845420 TC
130 TA
*
218845422 TTCAAAACGAAGACGAGATTCGATAC-TTAGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
1 TTCAAAACGAAGACGAGATTCGA-ACGTTTGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTT
* * * * * *
218845486 GCAATTTTGCGTTTG-TCCAAAGTAATCGAGCATCCCTTCAAAATTTCATTCATGTCTTCTAAAA
65 GCAATTTCGCGTTTGCT-CAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTT-TAAAA
218845550 ATTA
128 ATTA
* * * * * * * * *
218845554 TTTAAAACGAA-AGCTATATTCG-GCGTTTGACAATTCG-AGAATCATGCCCTATCGTGCTGGGC
1 TTCAAAACGAAGA-CGAGATTCGAACGTTTG-CAATTCGCGGAATCGTGCCCTAACGTGTTGGGT
** * *
218845616 TGTGATTTCTCGTTTGTTCAAAA
64 TGCAATTTCGCGTTTGCTCAAAA
218845639 CGATCGAATA
Statistics
Matches: 179, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
130 2 0.01
131 142 0.79
132 34 0.19
133 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (131 bp):
TTCAAAACGAAGACGAGATTCGAACGTTTGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTG
CAATTTCGCGTTTGCTCAAAATAATCGAACATCACTTCAAAATTTCACTCACGTCTTTAAAAATT
A
Done.