Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 695 of 770
Found at i:219151947 original size:40 final size:40
Alignment explanation
Indices: 219151888--219152095 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
219151878 CAATTGAATG
* * * *
219151888 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
219151928 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
219151968 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
219152008 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
219152048 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
219152088 ATATCCGG
1 ATATCCGG
219152096 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:219152026 original size:80 final size:80
Alignment explanation
Indices: 219151889--219152095 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
219151879 AATTGAATGA
* * ** * * *
219151889 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
219151954 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
219151967 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
219152032 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
219152049 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
219152096 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:219160064 original size:39 final size:40
Alignment explanation
Indices: 219160006--219160106 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
219159996 CAATTGAATG
* * *
219160006 ATATCCGGGCTAAGTCCCGAA-ACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACT
* * * *
219160045 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACT
*
219160085 ACATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
219160107 GCATTCGTGC
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
39 19 0.37
40 33 0.63
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGTAACT
Found at i:219160144 original size:41 final size:40
Alignment explanation
Indices: 219160047--219160198 Score: 182
Period size: 40 Copynumber: 3.8 Consensus size: 40
219160037 TAGTAATTAT
* * * *
219160047 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TTAA
*
219160087 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT-AA
* * **
219160128 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
219160168 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
219160199 TGTGGTTTAT
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.59
41 37 0.38
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTAA
Found at i:219160213 original size:81 final size:80
Alignment explanation
Indices: 219160043--219160214 Score: 229
Period size: 81 Copynumber: 2.1 Consensus size: 80
219160033 ATGCTAGTAA
* *
219160043 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGG
1 TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGACTA-ATCCGGGCTAAGACCCGAAGG
*
219160108 CATTCGTGCAAGTTGT
65 CATTCGTGCAAGTGGT
* * * * *
219160124 TAAAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT-ATCCGGGCTAAGACCCGAAG
1 TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-G-ACTAATCCGGGCTAAGACCCGAAG
*
219160188 GCATTCGTGCATGTGGT
64 GCATTCGTGCAAGTGGT
219160205 TTATATCCGG
1 TTATATCCGG
219160215 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 75 0.96
82 1 0.01
83 2 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGACTAATCCGGGCTAAGACCCGAAGGC
ATTCGTGCAAGTGGT
Found at i:219161925 original size:47 final size:47
Alignment explanation
Indices: 219161861--219161984 Score: 150
Period size: 47 Copynumber: 2.6 Consensus size: 47
219161851 TTCATAGCCG
219161861 ATGCATGTCCCAGACATGTCTTACACTAGCGCTCGTC-TCAATGT-C-A
1 ATGCATGTCCCAGACATGTCTTACACTAGCGCTC-TCAT-AATGTGCTA
* *
219161907 ATGCCATGTCCCAAACATGGTCTTACACT-G-GCTCTCATAATGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCGCTCTCATAATGT-GCTA
219161955 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
219161985 TCACACAAGT
Statistics
Matches: 67, Mismatches: 3, Indels: 14
0.80 0.04 0.17
Matches are distributed among these distances:
45 7 0.10
46 18 0.27
47 29 0.43
48 13 0.19
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCGCTCTCATAATGTGCTA
Found at i:219166354 original size:25 final size:25
Alignment explanation
Indices: 219166308--219166356 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
219166298 AAGGAAATAA
* *
219166308 AGAAAAATGGAAGGGAATTGAAGAG
1 AGAAAAATGGAAGAGAAGTGAAGAG
219166333 AGAAAAAT-GAGAGAGAAGTGAAGA
1 AGAAAAATGGA-AGAGAAGTGAAGA
219166357 TATGAGAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.55, C:0.00, G:0.35, T:0.10
Consensus pattern (25 bp):
AGAAAAATGGAAGAGAAGTGAAGAG
Found at i:219171818 original size:24 final size:25
Alignment explanation
Indices: 219171791--219171858 Score: 129
Period size: 25 Copynumber: 2.8 Consensus size: 25
219171781 TCTTTTAATT
219171791 ACTGGGGCAAAGCCCTTTT-GGTAA
1 ACTGGGGCAAAGCCCTTTTCGGTAA
219171815 ACTGGGGCAAAGCCCTTTTCGGTAA
1 ACTGGGGCAAAGCCCTTTTCGGTAA
219171840 ACTGGGGCAAAGCCCTTTT
1 ACTGGGGCAAAGCCCTTTT
219171859 TCACTTCCTC
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
24 19 0.44
25 24 0.56
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (25 bp):
ACTGGGGCAAAGCCCTTTTCGGTAA
Found at i:219171929 original size:20 final size:20
Alignment explanation
Indices: 219171904--219171941 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
219171894 ATATATGAAT
*
219171904 ATATCATGTGCATTTCATAC
1 ATATCATGTGCATATCATAC
219171924 ATATCATGTGCATATCAT
1 ATATCATGTGCATATCAT
219171942 GTCAAATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:219171937 original size:11 final size:11
Alignment explanation
Indices: 219171904--219171953 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
219171894 ATATATGAAT
219171904 ATATCATGTGC
1 ATATCATGTGC
* *
219171915 ATTTCA--TAC
1 ATATCATGTGC
219171924 ATATCATGTGC
1 ATATCATGTGC
219171935 ATATCATGT-C
1 ATATCATGTGC
*
219171945 AAATCATGT
1 ATATCATGT
219171954 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
9 7 0.22
10 9 0.28
11 16 0.50
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:219175864 original size:40 final size:38
Alignment explanation
Indices: 219175809--219175948 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 38
219175799 AGATATAACG
* *
219175809 ACTCGCTCAAATGCCTTCAGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTC-GGACTAAGCCCGGTT-TAGTA
*
219175849 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTC-GGAC-TAAGCCC-GGTTTAGTA
* * *
219175889 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGACTAAGCCCGG-TTTAGTA
* * *
219175928 ATTCGCACGAACGCCTTCGGA
1 ACTCGCACAAATGCCTTCGGA
219175949 TCTTAGTCCG
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
38 4 0.05
39 29 0.35
40 45 0.54
41 6 0.07
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAATGCCTTCGGACTAAGCCCGGTTTAGTA
Found at i:219175917 original size:79 final size:79
Alignment explanation
Indices: 219175809--219176000 Score: 192
Period size: 79 Copynumber: 2.4 Consensus size: 79
219175799 AGATATAACG
* * ** *
219175809 ACTCGCTCAAATGCCTTCAGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTC-GGGCTTAGCCCGGATT-TAGTAACTCGCACGAACGCCTTC-GGATC
* *
219175872 TTAACCCGGGTTTAGTA
63 TTAACCCGGATATAGTA
* *
219175889 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTAATTCGCACGAACGCCTTCGGATCTTA
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTA
** *
219175954 GTCCGGATATAGTC
66 ACCCGGATATAGTA
**
219175968 ACTTAACACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
219176001 CATCATTCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.57
80 37 0.39
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAACGCCTTCGGATCTTA
ACCCGGATATAGTA
Found at i:219183976 original size:78 final size:80
Alignment explanation
Indices: 219183852--219184042 Score: 194
Period size: 78 Copynumber: 2.4 Consensus size: 80
219183842 CGATATAACG
* * ** *
219183852 ACTCGCTCAAATGCCTTCAGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTC-GGGCTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTC-GGATC
* *
219183915 TTAACCCGGGTTTAGTA
64 TTAACCCGGATATAGTA
*
219183932 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATT-TATTAA-TCGCACGAACGCCTTCGGATCTT
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTCGGATCTT
** *
219183995 AGTCCGGATATAGTC
66 AACCCGGATATAGTA
**
219184010 ACTTAACACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
219184043 CATCATTCAA
Statistics
Matches: 94, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
77 3 0.03
78 39 0.41
79 33 0.35
80 19 0.20
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTCGGATCTT
AACCCGGATATAGTA
Found at i:219183996 original size:39 final size:39
Alignment explanation
Indices: 219183852--219184042 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
219183842 CGATATAACG
* * **
219183852 ACTCGCTCAAATGCCTTCAGGACAAAGCCCGG-TTATAGTA
1 ACTCGCACGAATGCCTTC-GGACTTAGCCCGGATT-TAGTA
* *
219183892 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTC-GGACTTAGCCCGGATTTAGTA
* * *
219183932 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGACTTAGCCCGGATTTAGTA
* * * *
219183971 A-TCGCACGAACGCCTTCGGATCTTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGA-CTTAGCCCGGATTTAGTA
** *
219184010 ACTTAACAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAATGCCTTC-GGACTTAGCCCGGA
219184043 CATCATTCAA
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
38 16 0.13
39 33 0.27
40 66 0.53
41 9 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
ACTCGCACGAATGCCTTCGGACTTAGCCCGGATTTAGTA
Found at i:219186492 original size:101 final size:96
Alignment explanation
Indices: 219186319--219186547 Score: 296
Period size: 101 Copynumber: 2.3 Consensus size: 96
219186309 CTGGTATGCA
* * * ** **
219186319 TAGTAGCCTGCACTTAGTACTACACATGCGACTAACAATTTGGTACATGTAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACGAACAATCGGGTACACATAGTAGCCTACACTTA
* * *
219186384 GTACTACACATGTGACCTAACCATCTGATATACG
66 GTACTACACATGCGACCTAACAATC---TACACG
* *
219186418 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAATCTATCGGGTACGCATAGTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CGAA-CAATCGGGTACACATAGTAGCCTACACT
219186483 TAGTACTACACATGCGACCTAACAATCTACACG
64 TAGTACTACACATGCGACCTAACAATCTACACG
*
219186516 TAGAAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
219186548 CTAAAACCGT
Statistics
Matches: 115, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
97 1 0.01
98 35 0.30
99 29 0.25
100 3 0.03
101 47 0.41
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (96 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACGAACAATCGGGTACACATAGTAGCCTACACTTA
GTACTACACATGCGACCTAACAATCTACACG
Found at i:219186536 original size:47 final size:48
Alignment explanation
Indices: 219186319--219186551 Score: 245
Period size: 50 Copynumber: 4.8 Consensus size: 48
219186309 CTGGTATGCA
* * *
219186319 TAGTAGCCTGCACTTAGTACTACACATGCGA-CTAACAATTTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA--TCGTACACG
* * *
219186368 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACCATCTGATATACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC-G-TACACG
* * * * * *
219186418 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAATCTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATC--GTACACG
* *
219186469 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATC-TACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCGTACACG
* *
219186516 TAGAAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
219186552 AACCGTCTTA
Statistics
Matches: 152, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
47 36 0.24
48 1 0.01
49 30 0.20
50 46 0.30
51 38 0.25
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCGTACACG
Found at i:219186572 original size:150 final size:149
Alignment explanation
Indices: 219186311--219186589 Score: 382
Period size: 150 Copynumber: 1.9 Consensus size: 149
219186301 GAAGCTCTCT
* * * * *
219186311 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACTAACAATTTGGTACATGTAGTAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACTAACAA-TTGCTACACGTAGAAGCC
* * * * *
219186376 TACACTTAGTACTACACATGTGACCTAACCATCTGATATACGTAGTAGCCTGCACTTAGTACTAC
65 TACACTTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTGCACATAGTACTAC
219186441 ACACGTGATCGAATCTATCG
130 ACACGTGATCGAATCTATCG
219186461 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA-T-CTACACGTAGAAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGA-CTAACAATTGCTACACGTAGAAGCC
* * * *
219186524 TGCACTTAGTACTACACACGTGACCTAAAACCGTCTTAAACACATAGTAGCCTGTACATAGTACT
65 TACACTTAGTACTACACACGTGACCT--AACCATCTGAAACACATAGTAGCCTGCACATAGTACT
219186589 A
128 A
219186590 GACATGTGTT
Statistics
Matches: 112, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
148 36 0.32
149 1 0.01
150 68 0.61
151 7 0.06
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (149 bp):
GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACTAACAATTGCTACACGTAGAAGCCT
ACACTTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTGCACATAGTACTACA
CACGTGATCGAATCTATCG
Found at i:219189863 original size:40 final size:40
Alignment explanation
Indices: 219189818--219189984 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
219189808 CGGAATATAA
219189818 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
219189858 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
219189898 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
219189938 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
219189977 CCGGATAT
1 CCGGATAT
219189985 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:219189968 original size:80 final size:79
Alignment explanation
Indices: 219189834--219189984 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
219189824 ATAATCACGT
*
219189834 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
219189899 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
219189914 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
219189977 CCGGATAT
64 CCGGATAT
219189985 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:219193641 original size:40 final size:40
Alignment explanation
Indices: 219193596--219193762 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
219193586 CGGAATATAA
219193596 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
219193636 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
219193676 CCGGATGTAGCCACTAGCA-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
219193715 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
219193755 CCGGATAT
1 CCGGATAT
219193763 CATTCAATTT
Statistics
Matches: 102, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 31 0.30
40 70 0.69
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:219193745 original size:79 final size:78
Alignment explanation
Indices: 219193615--219193760 Score: 190
Period size: 79 Copynumber: 1.9 Consensus size: 78
219193605 ATCACGTGCA
*
219193615 CAAATGCCTTCGGGTCTTAGCCCGGATAAAATGTCTCGCACGAATGCCTTCGGG-TCTTAGCCCG
1 CAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGCCCG
219193679 GATGTAGCCACTAG
65 GATGTAGCCACTAG
* * * *
219193693 CAAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAGCC
1 CAAA-TGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAGCC
219193756 CGGAT
63 CGGAT
219193761 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
78 7 0.12
79 51 0.86
80 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (78 bp):
CAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCCCGG
ATGTAGCCACTAG
Found at i:219196636 original size:20 final size:20
Alignment explanation
Indices: 219196611--219196654 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
219196601 AGGGACTAAA
* *
219196611 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
219196631 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
219196651 ATGA
1 ATGA
219196655 TTACATGTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:219201748 original size:20 final size:20
Alignment explanation
Indices: 219201723--219201760 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
219201713 GTTTATTCGC
* *
219201723 GATTTTCAATATTTTGTAAA
1 GATTTTAAAAATTTTGTAAA
219201743 GATTTTAAAAATTTTGTA
1 GATTTTAAAAATTTTGTA
219201761 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.11, T:0.50
Consensus pattern (20 bp):
GATTTTAAAAATTTTGTAAA
Found at i:219203420 original size:28 final size:28
Alignment explanation
Indices: 219203388--219203456 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
219203378 GCGTAGATCA
219203388 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
219203416 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
219203444 CGATA-TACCCCTA
1 CGAAATTACCCCTA
219203457 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:219207047 original size:30 final size:29
Alignment explanation
Indices: 219206953--219207054 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
219206943 TATAGTGAAT
* * *
219206953 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
219206982 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
219207010 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
219207040 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
219207055 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:219215225 original size:29 final size:30
Alignment explanation
Indices: 219215169--219215227 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
219215159 TTCCCAAGCC
219215169 TAGGGGAAAAAGTATAATTATGCAAAAGTT
1 TAGGGGAAAAAGTATAATTATGCAAAAGTT
* * *
219215199 TAGGGGAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTATAATTATGCAAAAGTT
219215228 CGTAGTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.42, C:0.05, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGAAAAAGTATAATTATGCAAAAGTT
Found at i:219218314 original size:44 final size:44
Alignment explanation
Indices: 219218263--219218350 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
219218253 GAGCGAATGA
*
219218263 ATGTTTTCGGTGTGGTCCTCTGGATCATTTTATTAGAGACTGCC
1 ATGTTTTCGGTGTGGTCCTCCGGATCATTTTATTAGAGACTGCC
*
219218307 ATGTTTTCGGTGTGGTTCTCCGGATCATTTTATTAGAGACTGCC
1 ATGTTTTCGGTGTGGTCCTCCGGATCATTTTATTAGAGACTGCC
219218351 CGGAGAGAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.16, C:0.18, G:0.25, T:0.41
Consensus pattern (44 bp):
ATGTTTTCGGTGTGGTCCTCCGGATCATTTTATTAGAGACTGCC
Found at i:219237687 original size:20 final size:20
Alignment explanation
Indices: 219237664--219237705 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
219237654 GAGCAAATGC
219237664 AAGACATTTTTGAGATGACT
1 AAGACATTTTTGAGATGACT
219237684 AAGACATTTTTGAGATGACT
1 AAGACATTTTTGAGATGACT
219237704 AA
1 AA
219237706 TCTTGGTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (20 bp):
AAGACATTTTTGAGATGACT
Found at i:219240919 original size:40 final size:40
Alignment explanation
Indices: 219240874--219241040 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
219240864 CGGAATATAA
219240874 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
219240914 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
219240954 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
219240994 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
219241033 CCGGATAT
1 CCGGATAT
219241041 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:219241024 original size:80 final size:79
Alignment explanation
Indices: 219240890--219241040 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
219240880 ATAATCACGT
*
219240890 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
219240955 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
219240970 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
219241033 CCGGATAT
64 CCGGATAT
219241041 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:219248924 original size:40 final size:40
Alignment explanation
Indices: 219248879--219249045 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
219248869 CGGAATATAA
219248879 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
219248919 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
219248959 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
219248999 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
219249038 CCGGATAT
1 CCGGATAT
219249046 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:219257843 original size:47 final size:47
Alignment explanation
Indices: 219257769--219258034 Score: 240
Period size: 47 Copynumber: 5.7 Consensus size: 47
219257759 TGGGTAAGGT
*
219257769 GCCGATGCCATGTTCCAGACATAGTCTTACACTGGCTCACATCTC-AA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACATCTCGAA
* * * * *
219257816 GTCGATGCCATATCCCAAACATGGTCTTACACTGACT-ATCATCTCGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCA-CATCTCGAA
* * * * *
219257864 GTCGATG-CATGTCCTAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAA
* * * * *
219257910 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCACTCGTCT-TAA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAA
* * * **
219257955 TGCCGATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 -GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACAT-CTCGAA
219258004 GCCGATG-CATGTCCCAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGTCTTACACT
219258035 AGTTCACGCA
Statistics
Matches: 181, Mismatches: 31, Indels: 15
0.80 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 73 0.40
47 75 0.41
48 31 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCGAA
Found at i:219258029 original size:140 final size:141
Alignment explanation
Indices: 219257769--219258034 Score: 349
Period size: 140 Copynumber: 1.9 Consensus size: 141
219257759 TGGGTAAGGT
* * * *
219257769 GCCGATGCCATGTTCCAGACATAGTCTTACACTGGCTCACATCTCAAGTCGATGCCATATCCCAA
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCACACATCTCAAGCCGATGCCATATCCCAA
* * *
219257834 ACATGGTCTTACACTGACTATCATCTCGTAGTCGATGCATGTCCTAGACATGTCTTACACTGGCT
66 ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
219257899 TACGTCTCGAG
131 TACGTCTCGAG
* * * * *
219257910 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTTAATGCCGATGCCATGTCCCG
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCACACATCTCAA-GCCGATGCCATATCCCA
* * * *
219257973 GACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACT
65 AACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACACT
219258035 AGTTCACGCA
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
139 19 0.18
140 80 0.75
141 8 0.07
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCACACATCTCAAGCCGATGCCATATCCCAA
ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
TACGTCTCGAG
Found at i:219264251 original size:40 final size:40
Alignment explanation
Indices: 219264143--219264312 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
219264133 CGGGATTTAA
* * * * *
219264143 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
219264183 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
219264223 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
219264263 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
219264303 CCGGATATAT
1 CCGGATATAT
219264313 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:219273907 original size:71 final size:71
Alignment explanation
Indices: 219273821--219273984 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
219273811 CGATTTGTCT
219273821 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
219273886 CTTTCA
66 CTTTCA
219273892 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
219273957 CTTTCA
66 CTTTCA
219273963 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
219273985 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:219274022 original size:71 final size:70
Alignment explanation
Indices: 219273821--219274018 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
219273811 CGATTTGTCT
* * * *
219273821 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
219273886 CTTTCA
65 CTTTCA
* * * *
219273892 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
219273957 CTTTCA
65 CTTTCA
* *
219273963 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
219274019 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:219276263 original size:21 final size:20
Alignment explanation
Indices: 219276234--219276272 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
219276224 CGTACTTCGG
*
219276234 AAATAGGGCCTCGATGGGCCA
1 AAATAGGGCC-CAATGGGCCA
*
219276255 AAATTGGGCCCAATGGGC
1 AAATAGGGCCCAATGGGC
219276273 TTACGGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.28, C:0.23, G:0.33, T:0.15
Consensus pattern (20 bp):
AAATAGGGCCCAATGGGCCA
Found at i:219279241 original size:39 final size:39
Alignment explanation
Indices: 219279110--219279300 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
219279100 GGATATAACG
* ** **
219279110 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
219279150 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
219279190 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
219279228 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
219279268 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
219279301 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:219279245 original size:78 final size:80
Alignment explanation
Indices: 219279150--219279300 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
219279140 GGTTATAGCG
* * * *
219279150 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
219279212 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
219279228 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
219279293 AGCCCGGA
66 AGCCCGGA
219279301 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:219281978 original size:19 final size:19
Alignment explanation
Indices: 219281954--219281991 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
219281944 TATGTGTAAC
219281954 ACCCCTAACCCGTTTCCAT
1 ACCCCTAACCCGTTTCCAT
219281973 ACCCCTAACCCGTTTCCAT
1 ACCCCTAACCCGTTTCCAT
219281992 CGCTGGAACG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.26
Consensus pattern (19 bp):
ACCCCTAACCCGTTTCCAT
Found at i:219285774 original size:40 final size:39
Alignment explanation
Indices: 219285729--219285858 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
219285719 CGGAATATAA
219285729 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
219285769 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
219285809 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
219285849 CCGGATATAA
1 CCGGATATAA
219285859 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:219285873 original size:40 final size:40
Alignment explanation
Indices: 219285745--219285896 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
219285735 ATAACCATGT
* * *
219285745 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
219285785 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
219285825 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
219285865 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
219285897 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:219285879 original size:80 final size:80
Alignment explanation
Indices: 219285745--219285894 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
219285735 ATAACCATGT
*
219285745 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
219285809 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
219285825 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
219285888 CCCGGAT
64 CCCGGAT
219285895 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:219296492 original size:47 final size:47
Alignment explanation
Indices: 219296441--219296678 Score: 299
Period size: 47 Copynumber: 5.1 Consensus size: 47
219296431 TTAGGATTTT
219296441 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
219296488 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
219296535 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
219296582 ATGTGGTGAATATGAACATGC--ATATGTGGTAAAGCCGAATGG-CA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
219296626 ATGTGAAT-ATATATGAGATATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTG-ATGA-ATGTGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
219296673 ATGTGA
1 ATGTGA
219296679 AATATATATA
Statistics
Matches: 177, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
44 8 0.05
45 25 0.14
46 27 0.15
47 117 0.66
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:219296494 original size:22 final size:22
Alignment explanation
Indices: 219296466--219296541 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
219296456 ACATGCATAT
219296466 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
219296488 ATGTGATGAATGTG-AGCAT-GCATA
1 ATGTGAT-AA-G-GCCGAATGGC-CA
219296512 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
219296535 ATGTGAT
1 ATGTGAT
219296542 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:219296590 original size:25 final size:25
Alignment explanation
Indices: 219296515--219296590 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
219296505 ATGCATATAT
219296515 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
219296540 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
219296562 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
219296587 GTGA
1 GTGA
219296591 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:219296702 original size:48 final size:46
Alignment explanation
Indices: 219296464--219296715 Score: 200
Period size: 47 Copynumber: 5.4 Consensus size: 46
219296454 GAACATGCAT
* * * *
219296464 ATATGTGATAAGGCCGAATGGCCAATGTG-ATGA-ATGTGAG-CATGC
1 ATATGTGGTAAAGCCGAATGG-CAATGTGAAT-ATATATGAGAGATGC
* * * *
219296509 ATATATGTGATAAGGCCGAATGGCCAATGTG-ATGA-ATGTGAG-CATGC
1 --ATATGTGGTAAAGCCGAATGG-CAATGTGAAT-ATATATGAGAGATGC
* * *
219296556 ATATGTGTGATAAGGCCGAATGGCCAATGTG-GTGA-ATATGA-ACATGC
1 ATATGTG-G-TAAAGCCGAATGG-CAATGTGAAT-ATATATGAGAGATGC
*
219296603 ATATGTGGTAAAGCCGAATGGCAATGTGAATATATATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCAATGTGAATATATATGAGAGATGC
*
219296649 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATAT-ATGAGATGT
1 ATATGTGGTAAAGCCGAATGG-CAATGTG-AATATATATGA-GAGATGC
219296697 ATATGTGGTAAAGCCGAAT
1 ATATGTGGTAAAGCCGAAT
219296716 ATGTATATGT
Statistics
Matches: 188, Mismatches: 8, Indels: 17
0.88 0.04 0.08
Matches are distributed among these distances:
44 8 0.04
45 26 0.14
46 27 0.14
47 94 0.50
48 33 0.18
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCAATGTGAATATATATGAGAGATGC
Found at i:219296720 original size:23 final size:23
Alignment explanation
Indices: 219296693--219296738 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
219296683 TATATATGAG
219296693 ATGTATATGTGGTAAAGCCGAAT
1 ATGTATATGTGGTAAAGCCGAAT
219296716 ATGTATATGTGGTAAAGCCGAAT
1 ATGTATATGTGGTAAAGCCGAAT
219296739 GGCTAGTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (23 bp):
ATGTATATGTGGTAAAGCCGAAT
Found at i:219297012 original size:37 final size:37
Alignment explanation
Indices: 219296904--219297012 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
219296894 GGAAATATAT
*
219296904 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
219296941 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
219296978 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
219297013 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:219298570 original size:159 final size:160
Alignment explanation
Indices: 219298268--219298578 Score: 534
Period size: 159 Copynumber: 1.9 Consensus size: 160
219298258 GAGAATTGAG
*
219298268 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCG
* * *
219298333 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
66 AAGAGCATTCGTGCTAGTGATATATCCAGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
219298398 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT
131 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
219298428 AGTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCG
* * *
219298492 AAGAGCATTCGTGCTAGTGATATATCCATGCTAAATCCCGAAGAGCATTCGTGCTGGTGTTATAT
66 AAGAGCATTCGTGCTAGTGATATATCCAGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
*
219298557 CCGGGCTAGGTCCCGAAGAGCA
131 CCGGGCTAAGTCCCGAAGAGCA
219298579 ATCATGCTGG
Statistics
Matches: 142, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
159 130 0.92
160 12 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (160 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCG
AAGAGCATTCGTGCTAGTGATATATCCAGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATATAT
CCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:219298590 original size:40 final size:40
Alignment explanation
Indices: 219298268--219298578 Score: 534
Period size: 40 Copynumber: 7.8 Consensus size: 40
219298258 GAGAATTGAG
219298268 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
219298308 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
219298348 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
219298388 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
219298428 AGTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
219298467 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** *
219298507 AGTGATATATCCATGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
219298547 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
219298579 ATCATGCTGG
Statistics
Matches: 255, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
39 38 0.15
40 217 0.85
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:219302783 original size:47 final size:47
Alignment explanation
Indices: 219302732--219302923 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
219302722 TTAGGATTTT
* *
219302732 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCA
* *
219302779 ATGTGATGAATGTGAGCATGCATATATGTGGTAAAGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCA
* * *
219302826 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCA
* * * *
219302873 ATGTGGTGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCA
219302918 ATGTGA
1 ATGTGA
219302924 AATATATATA
Statistics
Matches: 130, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 25 0.19
47 105 0.81
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCA
Found at i:219302922 original size:92 final size:93
Alignment explanation
Indices: 219302732--219302923 Score: 305
Period size: 94 Copynumber: 2.1 Consensus size: 93
219302722 TTAGGATTTT
* *
219302732 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATATGAACA
219302797 TGCATATATGTGGTAAAGCCGAATGGCCA
66 TGCA-ATATGTGGTAAAGCCGAATGGCCA
* * * *
219302826 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATATGAACA
*
219302891 TGC-ATATGTGGTAAAGCCGAATGGTCA
66 TGCAATATGTGGTAAAGCCGAATGGCCA
219302918 ATGTGA
1 ATGTGA
219302924 AATATATATA
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
92 29 0.32
94 62 0.68
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (93 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATATGAACA
TGCAATATGTGGTAAAGCCGAATGGCCA
Found at i:219302955 original size:50 final size:49
Alignment explanation
Indices: 219302755--219303028 Score: 248
Period size: 50 Copynumber: 5.7 Consensus size: 49
219302745 GAACATGCAT
* * * * *
219302755 ATATGTGATAAGGCCAAATGGCCAATGTG--AT-GAATGTGAG-CATGC
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATAATATGAGACATGC
* *
219302800 ATATATGTGGTAAAGCCGAATGGCCAATGTG--AT-GAATGTGAG-CATGC
1 --ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATAATATGAGACATGC
* * *
219302847 ATATGTGTGATAAGGCCGAATGGCCAATGTG--GT-GAATATGA-ACATGC
1 ATATGTG-G-TAAAGCCGAATGGCCAATGTGAAATATAATATGAGACATGC
* *
219302894 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATA-ATATGAGACATGC
* * **
219302944 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATAT
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATA-ATATGAGACATGC
* *
219302994 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATATGTGGTAAAGCCGAATGGCCAATGTGAAATAT
219303029 GTAGTGTAAC
Statistics
Matches: 203, Mismatches: 16, Indels: 13
0.88 0.07 0.06
Matches are distributed among these distances:
45 26 0.13
46 2 0.01
47 83 0.41
48 1 0.00
49 6 0.03
50 85 0.42
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (49 bp):
ATATGTGGTAAAGCCGAATGGCCAATGTGAAATATAATATGAGACATGC
Found at i:219302974 original size:92 final size:91
Alignment explanation
Indices: 219302732--219302964 Score: 254
Period size: 94 Copynumber: 2.5 Consensus size: 91
219302722 TTAGGATTTT
* * * * * * * *
219302732 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATATGAGCATGCATATGTGTGATAAAGCCGAATGGCCAA-GTGGTGAATATGAACA
219302797 TGCATATATGTGGTAAAGCCGAATGGCCA
65 TGC--ATATGTGGTAAAGCCGAATGGCCA
* *
219302826 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACA
1 ATGTGATGAATATGAGCATGCATATGTGTGATAAAGCCGAATGGCCAA-GTGGTGAATATGAACA
*
219302891 TGCATATGTGGTAAAGCCGAATGGTCA
65 TGCATATGTGGTAAAGCCGAATGGCCA
* *
219302918 ATGTGAAATATATATATGAGATATGCATATGTG-G-TAAAGCCGAATGG
1 ATGTG--AT-GA-ATATGAG-CATGCATATGTGTGATAAAGCCGAATGG
219302965 TCAATGTGAA
Statistics
Matches: 123, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
92 28 0.23
94 64 0.52
95 13 0.11
96 7 0.06
97 11 0.09
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (91 bp):
ATGTGATGAATATGAGCATGCATATGTGTGATAAAGCCGAATGGCCAAGTGGTGAATATGAACAT
GCATATGTGGTAAAGCCGAATGGCCA
Found at i:219304549 original size:40 final size:40
Alignment explanation
Indices: 219304490--219304658 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
219304480 CGGGACTTTA
* * *
219304490 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
219304530 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
219304570 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
219304610 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
219304650 CCCGGATAT
1 CCCGGATAT
219304659 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:219312741 original size:39 final size:40
Alignment explanation
Indices: 219312563--219312745 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
219312553 CCGCACCAAG
* * * * * * * *
219312563 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
219312603 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
219312643 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
219312683 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
219312722 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
219312746 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:219318446 original size:39 final size:40
Alignment explanation
Indices: 219318357--219318538 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
219318347 TCGAATGATG
* *
219318357 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
219318397 TCCGGACTAAGAT-CCGAA-GCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
219318436 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
219318474 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
219318514 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
219318539 AATGAGTAGC
Statistics
Matches: 125, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
37 8 0.06
38 32 0.26
39 38 0.30
40 46 0.37
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:219318498 original size:77 final size:79
Alignment explanation
Indices: 219318357--219318536 Score: 235
Period size: 77 Copynumber: 2.3 Consensus size: 79
219318347 TCGAATGATG
*
219318357 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGCATTTG
219318422 TGCGAGTTACTA-A
66 TGCGAGTTACTATA
* * **
219318435 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAAT-CGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAA-GCAT
219318496 TTGTGCGAGTTACTATA
63 TTGTGCGAGTTACTATA
* *
219318513 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
219318537 TGAATGAGTA
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
75 1 0.01
76 12 0.13
77 38 0.42
78 28 0.31
79 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGCATTTG
TGCGAGTTACTATA
Found at i:219325693 original size:93 final size:92
Alignment explanation
Indices: 219325587--219325756 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
219325577 GCCCCTAAGT
* *
219325587 GAACTCGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
219325652 GAGTTCGGATGCCTAGTTACATTTCAC
66 GAGTTCGGATGCCTAGTTACATTTCAC
*
219325679 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
219325744 CGAGTTCGGATGC
65 CGAGTTCGGATGC
219325757 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 6 0.08
93 68 0.92
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAC
Found at i:219325753 original size:46 final size:46
Alignment explanation
Indices: 219325582--219325753 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
219325572 AACCCGCCCC
* * *
219325582 TAAGTGAACTC-GACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
219325627 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
219325675 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
219325720 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
219325754 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 13 0.12
46 49 0.46
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:219337809 original size:28 final size:28
Alignment explanation
Indices: 219337744--219337844 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
219337734 ATAGTGAATC
*
219337744 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
219337773 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
219337801 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
219337831 CGCACACTTAGTGC
1 CGCACACTTAGTGC
219337845 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:219347196 original size:8 final size:8
Alignment explanation
Indices: 219347183--219347212 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
219347173 CTAGATCGGC
219347183 AAAAGCCG
1 AAAAGCCG
219347191 AAAAGCCG
1 AAAAGCCG
*
219347199 AAATGCCG
1 AAAAGCCG
219347207 AAAAGC
1 AAAAGC
219347213 AGTATTTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:219347497 original size:28 final size:28
Alignment explanation
Indices: 219347457--219347521 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
219347447 ATGTACTAGA
*
219347457 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
219347485 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
219347513 ATACCCCTA
1 ATACCCCTA
219347522 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:219347685 original size:27 final size:27
Alignment explanation
Indices: 219347627--219347716 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
219347617 AGGAAGCGTC
219347627 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
219347655 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
219347682 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
219347711 CTGGTG
1 CTGGTG
219347717 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:219347735 original size:55 final size:56
Alignment explanation
Indices: 219347627--219347741 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
219347617 AGGAAGCGTC
* *
219347627 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
219347682 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
219347738 CTGG
1 CTGG
219347742 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:219348821 original size:11 final size:10
Alignment explanation
Indices: 219348793--219348826 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
219348783 AGCCTGTAAG
219348793 TATTCTGAAT
1 TATTCTGAAT
*
219348803 TTTTCTGAAT
1 TATTCTGAAT
219348813 ATATTCTGAAT
1 -TATTCTGAAT
219348824 TAT
1 TAT
219348827 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:219355342 original size:28 final size:28
Alignment explanation
Indices: 219355302--219355366 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
219355292 ATGTACTAGA
*
219355302 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
219355330 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
219355358 ATACCCCTA
1 ATACCCCTA
219355367 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:219355529 original size:27 final size:28
Alignment explanation
Indices: 219355482--219355545 Score: 94
Period size: 27 Copynumber: 2.3 Consensus size: 28
219355472 CTGGTGGCTA
*
219355482 TGCCACAAATTATCTGTTCTGATGGCCC
1 TGCCACAAATTATCTGTTCTGATGGCAC
* *
219355510 TGCCACATA-TATCTGTTCTGGTGGCAC
1 TGCCACAAATTATCTGTTCTGATGGCAC
219355537 TGCCACAAA
1 TGCCACAAA
219355546 ATATTTGTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 24 0.75
28 8 0.25
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (28 bp):
TGCCACAAATTATCTGTTCTGATGGCAC
Found at i:219355572 original size:29 final size:28
Alignment explanation
Indices: 219355482--219355572 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
219355472 CTGGTGGCTA
* * * *
219355482 TGCCACAAATTATCTGTTCTGATGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
219355510 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
219355537 TGCCACAAAATATTTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
219355566 TGTCACA
1 TGCCACA
219355573 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:219355580 original size:55 final size:56
Alignment explanation
Indices: 219355472--219355586 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
219355462 AGGAAGCGTC
* *
219355472 CTGGTGGCTATGCCACAAATTATCTGTTCTGATGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGATGACCCTGCCACATATATCTGTAT
* * * * *
219355527 CTGGTGGC-ACTGCCACAAAATATTTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGATGACCCTGCCACATATATCTGTAT
219355583 CTGG
1 CTGG
219355587 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGATGACCCTGCCACATATATCTGTAT
Found at i:219356925 original size:11 final size:12
Alignment explanation
Indices: 219356897--219356925 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
219356887 GTTATTAATA
219356897 TAATTTAGTTCT
1 TAATTTAGTTCT
219356909 TAATTTAGTTC-
1 TAATTTAGTTCT
219356920 TAATTT
1 TAATTT
219356926 GTTTCAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (12 bp):
TAATTTAGTTCT
Found at i:219357943 original size:35 final size:35
Alignment explanation
Indices: 219357897--219357967 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
219357887 CTTTATTAAG
219357897 TGTGATCGGATCTCCTTTGCTTTAATAAAACATTT
1 TGTGATCGGATCTCCTTTGCTTTAATAAAACATTT
219357932 TGTGATCGGATCTCCTTTGCTTTAATAAAACATTT
1 TGTGATCGGATCTCCTTTGCTTTAATAAAACATTT
219357967 T
1 T
219357968 AGTTTATTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44
Consensus pattern (35 bp):
TGTGATCGGATCTCCTTTGCTTTAATAAAACATTT
Found at i:219359129 original size:25 final size:25
Alignment explanation
Indices: 219359100--219359163 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 25
219359090 ATATATATAT
* *
219359100 ATATATATAAAGAC-CAAAATAAGTA
1 ATATATATAAA-ACTAAAAATAAATA
219359125 ATATATATAATAACTTAAAAATAAATA
1 ATATATATAA-AAC-TAAAAATAAATA
219359152 ATATATATAAAA
1 ATATATATAAAA
219359164 TTTAAAATGG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 12 0.35
26 3 0.09
27 19 0.56
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (25 bp):
ATATATATAAAACTAAAAATAAATA
Found at i:219359171 original size:25 final size:27
Alignment explanation
Indices: 219359115--219359170 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
219359105 TATAAAGACC
*
219359115 AAAATAAGTAATATATATAATAACTTA
1 AAAATAAATAATATATATAATAACTTA
*
219359142 AAAATAAATAATATATATAA-AATTTA
1 AAAATAAATAATATATATAATAACTTA
219359168 AAA
1 AAA
219359171 TGGGCAATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 8 0.30
27 19 0.70
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (27 bp):
AAAATAAATAATATATATAATAACTTA
Found at i:219363889 original size:17 final size:18
Alignment explanation
Indices: 219363867--219363900 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
219363857 AATTTGATTT
219363867 TTAAAAT-TTTAATAATG
1 TTAAAATATTTAATAATG
219363884 TTAAAATATTTAATAAT
1 TTAAAATATTTAATAAT
219363901 TAAAAAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
TTAAAATATTTAATAATG
Found at i:219363908 original size:18 final size:17
Alignment explanation
Indices: 219363869--219363906 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
219363859 TTTGATTTTT
*
219363869 AAAATTTTAATAATGTT
1 AAAATTTTAATAATGTA
219363886 AAAATATTTAATAAT-TA
1 AAAAT-TTTAATAATGTA
219363903 AAAA
1 AAAA
219363907 ATGGTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
AAAATTTTAATAATGTA
Found at i:219365190 original size:10 final size:10
Alignment explanation
Indices: 219365169--219365198 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
219365159 ATAAATATCT
219365169 TAAATGAATTA
1 TAAAT-AATTA
219365180 TAAATAATTA
1 TAAATAATTA
219365190 TAAATAATT
1 TAAATAATT
219365199 TTACACCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.74
11 5 0.26
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (10 bp):
TAAATAATTA
Found at i:219366880 original size:31 final size:33
Alignment explanation
Indices: 219366817--219366882 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
219366807 AAATCAGAAA
219366817 ATGAGTTCGGGAGTCGGTTACGCACGAGGAAGG
1 ATGAGTTCGGGAGTCGGTTACGCACGAGGAAGG
219366850 ATGAGTTCGGGAGTCGGTTA-GCA-GAGGAAGG
1 ATGAGTTCGGGAGTCGGTTACGCACGAGGAAGG
219366881 AT
1 AT
219366883 TAGCACCCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 10 0.30
32 3 0.09
33 20 0.61
ACGTcount: A:0.26, C:0.12, G:0.42, T:0.20
Consensus pattern (33 bp):
ATGAGTTCGGGAGTCGGTTACGCACGAGGAAGG
Found at i:219367755 original size:13 final size:13
Alignment explanation
Indices: 219367737--219367761 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
219367727 TAGAAGTAAT
219367737 AAGAAATATATAA
1 AAGAAATATATAA
219367750 AAGAAATATATA
1 AAGAAATATATA
219367762 CATACATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
AAGAAATATATAA
Found at i:219367891 original size:2 final size:2
Alignment explanation
Indices: 219367835--219367877 Score: 77
Period size: 2 Copynumber: 21.0 Consensus size: 2
219367825 GTAATAAAAT
219367835 TA TA TA GTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
219367878 GATGCGTGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 38 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:219369668 original size:38 final size:39
Alignment explanation
Indices: 219369617--219369694 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
219369607 ATCTACTCCA
* *
219369617 CTGAAACTTCAAGGAGAT-TTCTGTGGCTTCGATCAACT
1 CTGAAACTTCAAGGAGATCTGCTGCGGCTTCGATCAACT
219369655 CTGAAACTTCAAGGAGATCTGCTGCGGCTTCGATCAACT
1 CTGAAACTTCAAGGAGATCTGCTGCGGCTTCGATCAACT
219369694 C
1 C
219369695 CACTGCTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 18 0.49
39 19 0.51
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (39 bp):
CTGAAACTTCAAGGAGATCTGCTGCGGCTTCGATCAACT
Found at i:219369876 original size:86 final size:85
Alignment explanation
Indices: 219369732--219370013 Score: 286
Period size: 86 Copynumber: 3.3 Consensus size: 85
219369722 AATTTTTAGT
* * * * * * *
219369732 CTGTTACCTACTGCTTAAGGGATTACGGCTT-GTCATCTTTGATCTGTTTCC-CTACTGCTTAGG
1 CTGTTACCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-ATCCACTACTGCTTAGG
** * *
219369795 G-TTTTAGATCTGTATACTCAAC
64 GAGATAAGATCTGCA-ACTCAAC
*
219369817 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTA-CCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGATCCACTACTGCTTAGGG
* *
219369882 AGATAAGATCTGCAATTTAAC
65 AGATAAGATCTGCAACTCAAC
* *
219369903 CTGTTACC-ACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCT-AACCACTACTGCTTAGGGG
1 CTGTTACCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGATCCACTACTGCTTAGGGA
* ****
219369966 GATAAGATCTGCAATTTGGT
66 GATAAGATCTGCAACTCAAC
*
219369986 CTGTTTCCCTACTGCTTAGGGGTTTAAG
1 CTG-TTACCTACTGCTTAGGGGTTTAAG
219370014 ACCTTATGAC
Statistics
Matches: 171, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
83 36 0.21
84 40 0.23
85 31 0.18
86 55 0.32
87 9 0.05
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (85 bp):
CTGTTACCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGATCCACTACTGCTTAGGGA
GATAAGATCTGCAACTCAAC
Found at i:219369990 original size:83 final size:85
Alignment explanation
Indices: 219369814--219370013 Score: 305
Period size: 84 Copynumber: 2.4 Consensus size: 85
219369804 CTGTATACTC
**
219369814 AACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTA
1 AACCTGTTA-CCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGAACCACTACTGCTTA
219369879 GGGAGATAAGATCTGCAATTT
65 GGGAGATAAGATCTGCAATTT
219369900 AACCTGTTACC-ACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCT-AACCACTACTGCTTAG
1 AACCTGTTACCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGAACCACTACTGCTTAG
*
219369963 GGGGATAAGATCTGCAATTT
66 GGAGATAAGATCTGCAATTT
*** *
219369983 GGTCTGTTTCCCTACTGCTTAGGGGTTTAAG
1 AACCTG-TTACCTACTGCTTAGGGGTTTAAG
219370014 ACCTTATGAC
Statistics
Matches: 105, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
83 36 0.34
84 40 0.38
85 20 0.19
86 9 0.09
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (85 bp):
AACCTGTTACCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGAACCACTACTGCTTAG
GGAGATAAGATCTGCAATTT
Found at i:219370353 original size:44 final size:45
Alignment explanation
Indices: 219370161--219370355 Score: 129
Period size: 44 Copynumber: 4.5 Consensus size: 45
219370151 GATTTTCAGC
* * * *
219370161 CTGTTACCCTACTGCTT-CGGGGTTGAGGCTCATCT-TCTTTGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATCTATCTTCGAT
* * * * * * * *
219370204 CTGTTTCCCTACTGCTTAGGGTGAT-AAGATC-TGCAATTTTCAAC
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCTCAT-CTATCTTCGAT
* * * * * *
219370248 CTATTACCCTACTTCTTAGGGGGTT-AAGGTC-TGTAAAT-TTGGTT
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATCT--ATCTTCGAT
219370292 C-GTTACCCTACTGCTTAGGGGGTTAAAGCTCAT-TATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATCTATCTTCGAT
*
219370335 CTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
219370356 TGATAAGATC
Statistics
Matches: 114, Mismatches: 29, Indels: 17
0.71 0.18 0.11
Matches are distributed among these distances:
42 3 0.03
43 47 0.41
44 61 0.54
45 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (45 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAAGCTCATCTATCTTCGAT
Found at i:219371182 original size:1 final size:1
Alignment explanation
Indices: 219371176--219371204 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
219371166 GGCTCTCTCC
219371176 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
219371205 AGGGAAGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:219374424 original size:40 final size:40
Alignment explanation
Indices: 219374375--219374542 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
219374365 TCTTCGGAAT
* * *
219374375 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
219374414 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
219374454 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
219374494 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
219374534 TTAGCCCGG
1 TTAGCCCGG
219374543 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:219382335 original size:40 final size:40
Alignment explanation
Indices: 219382290--219382419 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
219382280 CGGAATACAA
219382290 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
219382330 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
219382370 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
219382410 CCGGATATAA
1 CCGGATATAA
219382420 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:219391088 original size:40 final size:40
Alignment explanation
Indices: 219390982--219391165 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
219390972 TGCTGGAAAT
* * * * * **
219390982 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
219391022 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
219391062 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
219391100 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
219391141 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
219391166 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:219403012 original size:41 final size:41
Alignment explanation
Indices: 219402967--219403084 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
219402957 TGAAAGATAA
219402967 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
219403008 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
219403038 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
219403079 ATGTAG
1 ATGTAG
219403085 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:219403023 original size:71 final size:71
Alignment explanation
Indices: 219402935--219403098 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
219402925 GAGATGTATC
219402935 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
219403000 AGGACA
66 AGGACA
219403006 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
219403071 AGGACA
66 AGGACA
219403077 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
219403099 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:219404866 original size:20 final size:20
Alignment explanation
Indices: 219404841--219404907 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
219404831 ATTTTGATAT
219404841 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
219404861 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
219404881 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
219404901 ACATGAT
1 ACATGAT
219404908 GTATTCATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:219404868 original size:11 final size:11
Alignment explanation
Indices: 219404852--219404907 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
219404842 CATGATATGT
219404852 ATGATATGCAC
1 ATGATATGCAC
*
219404863 ATGATATGTAC
1 ATGATATGCAC
219404874 --GATATGCAC
1 ATGATATGCAC
*
219404883 ATGATATG--T
1 ATGATATGCAC
219404892 ATGATATGCAC
1 ATGATATGCAC
219404903 ATGAT
1 ATGAT
219404908 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:219404986 original size:26 final size:24
Alignment explanation
Indices: 219404958--219405027 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
219404948 AGGAAGTGCA
*
219404958 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
219404982 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTGCCCCAGTTTACC
219405008 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
219405028 ATTAAAAGGG
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
24 12 0.29
25 16 0.38
26 14 0.33
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:219405049 original size:24 final size:23
Alignment explanation
Indices: 219404958--219405053 Score: 84
Period size: 24 Copynumber: 4.0 Consensus size: 23
219404948 AGGAAGTGCA
* *
219404958 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTAGGCCCCAG-TTATC
**
219404982 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TAGGCCCCAG-TTATC
** *
219405008 AAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTAGGCCCCAGTTATC
219405031 AAAAGGGCTAGGCCTCCAGTTAT
1 AAAAGGGCTAGGCC-CCAGTTAT
219405054 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 16 0.25
24 18 0.28
25 16 0.25
26 14 0.22
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTAGGCCCCAGTTATC
Found at i:219405284 original size:31 final size:31
Alignment explanation
Indices: 219405249--219405338 Score: 101
Period size: 38 Copynumber: 2.7 Consensus size: 31
219405239 GTTTATAGTG
*
219405249 AAGGCTTCGGCCCAGTAATATGGAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
219405280 AAGGCTTCGGCCCAGTGTTATGAGATATGAAATATGAA
1 AAGGCTTCGGCCCA--G---T-A-ATATGAAATATGAA
219405318 AAGGCTTCGGCCCAGT-ATATG
1 AAGGCTTCGGCCCAGTAATATG
219405339 CTGAGATGGA
Statistics
Matches: 51, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
30 5 0.10
31 14 0.27
33 2 0.04
36 2 0.04
37 1 0.02
38 27 0.53
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:219412948 original size:20 final size:20
Alignment explanation
Indices: 219412923--219412989 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
219412913 ATTTTGATAT
219412923 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
219412943 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
219412963 AAATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
219412983 ACATGAT
1 ACATGAT
219412990 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:219412957 original size:9 final size:9
Alignment explanation
Indices: 219412925--219412981 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
219412915 TTTGATATAC
219412925 ATGATATGT
1 ATGATATGT
*
219412934 ATGATATGCAC
1 ATGATATG--T
219412945 ATGATATGT
1 ATGATATGT
*
219412954 ATGATATGCAA
1 ATGATATG--T
219412965 ATGATATGT
1 ATGATATGT
*
219412974 ATGGTATG
1 ATGATATG
219412982 CACATGATGT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
9 23 0.59
11 16 0.41
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:219413068 original size:26 final size:23
Alignment explanation
Indices: 219413040--219413109 Score: 77
Period size: 26 Copynumber: 2.8 Consensus size: 23
219413030 AGGAAGTGCA
219413040 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCT-TGCCCCAGTTTACC
* *
219413064 GAAAAGGACTTTTGCCCCAGTTTATC
1 -AAAAGGGC--TTGCCCCAGTTTACC
219413090 AAAAGGGCCTTGCCCCAGTT
1 AAAAGGG-CTTGCCCCAGTT
219413110 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 11 0.28
25 13 0.33
26 14 0.36
27 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (23 bp):
AAAAGGGCTTGCCCCAGTTTACC
Found at i:219413367 original size:31 final size:31
Alignment explanation
Indices: 219413332--219413421 Score: 101
Period size: 38 Copynumber: 2.7 Consensus size: 31
219413322 GTTTACAGTG
*
219413332 AAGGCTTCCGCCCAGTAATATGAAATATGAA
1 AAGGCTTCGGCCCAGTAATATGAAATATGAA
219413363 AAGGCTTCGGCCCAGTGTTATGAGATATGAAATATGAA
1 AAGGCTTCGGCCCA--G---T-A-ATATGAAATATGAA
219413401 AAGGCTTCGGCCCAGT-ATATG
1 AAGGCTTCGGCCCAGTAATATG
219413422 CTGAGATGGA
Statistics
Matches: 51, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
30 5 0.10
31 13 0.25
33 2 0.04
36 2 0.04
37 1 0.02
38 28 0.55
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:219414922 original size:24 final size:24
Alignment explanation
Indices: 219414856--219414924 Score: 102
Period size: 24 Copynumber: 2.9 Consensus size: 24
219414846 TTTCGTCAGC
* *
219414856 CAACAGCTCATTAAATCTATCCAA
1 CAACAACTCATTAAATCTGTCCAA
219414880 CAACAACTCATTAAATCTGTCCAA
1 CAACAACTCATTAAATCTGTCCAA
* *
219414904 CAACATCTCATTCAATCTGTC
1 CAACAACTCATTAAATCTGTC
219414925 TAGCAGCTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.38, C:0.30, G:0.04, T:0.28
Consensus pattern (24 bp):
CAACAACTCATTAAATCTGTCCAA
Found at i:219416262 original size:50 final size:52
Alignment explanation
Indices: 219416150--219416269 Score: 165
Period size: 50 Copynumber: 2.3 Consensus size: 52
219416140 ATGAACAAAT
* *
219416150 GAGTTACTTAATGCATGAATTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGAATTAATTTAATGATGCAAACTTTAACTAACATGA
* * *
219416202 GAGTTACATAATGCATGTCA-TAATTT-ATGATGCAAAC-TTAAGTTACATGA
1 GAGTTACATAATGCATG-AATTAATTTAATGATGCAAACTTTAACTAACATGA
219416252 GAGTTACATAATGCATGA
1 GAGTTACATAATGCATGA
219416270 CTTTATTAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
50 27 0.44
51 11 0.18
52 22 0.36
53 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (52 bp):
GAGTTACATAATGCATGAATTAATTTAATGATGCAAACTTTAACTAACATGA
Found at i:219417891 original size:30 final size:30
Alignment explanation
Indices: 219417855--219417911 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
219417845 ACTCTTTTTT
219417855 TTTCTTTTCTATCTCA-ATCTCTTTTTCAGC
1 TTTCTTTTCTATCTCACAT-TCTTTTTCAGC
* *
219417885 TTTCTTTTCTTTTTCACATTCTTTTTC
1 TTTCTTTTCTATCTCACATTCTTTTTC
219417912 GCTCTCAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.11, C:0.25, G:0.02, T:0.63
Consensus pattern (30 bp):
TTTCTTTTCTATCTCACATTCTTTTTCAGC
Found at i:219417911 original size:18 final size:18
Alignment explanation
Indices: 219417874--219417909 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
219417864 TATCTCAATC
*
219417874 TCTTTTTCAGCTTTCTTT
1 TCTTTTTCAGCATTCTTT
219417892 TCTTTTTCA-CATTCTTT
1 TCTTTTTCAGCATTCTTT
219417909 T
1 T
219417910 TCGCTCTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.08, C:0.22, G:0.03, T:0.67
Consensus pattern (18 bp):
TCTTTTTCAGCATTCTTT
Found at i:219419365 original size:28 final size:28
Alignment explanation
Indices: 219419324--219419417 Score: 116
Period size: 28 Copynumber: 3.3 Consensus size: 28
219419314 AAGTCTACAT
* * *
219419324 ACATGCATGTGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
* * *
219419352 TCTTTCATATGGCCCATTAGGCCTAAATC
1 ACATTCATATGGCCCATTAGGCC-CAATC
*
219419381 ACATTCATATGGCCCATTAGGCACAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
219419409 ACATTCATA
1 ACATTCATA
219419418 GTCATGCAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
28 31 0.56
29 24 0.44
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:219419652 original size:16 final size:16
Alignment explanation
Indices: 219419628--219419662 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
219419618 GTAGCCAAAC
*
219419628 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCAGCA
*
219419644 TTTCGGCTTTTCAGCA
1 TTTCAGCTTTTCAGCA
219419660 TTT
1 TTT
219419663 TGGGATTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCAGCA
Found at i:219421368 original size:21 final size:21
Alignment explanation
Indices: 219421342--219421387 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
219421332 TCGACCTTGA
219421342 AAAGAATCCATATTATATATT
1 AAAGAATCCATATTATATATT
219421363 AAAGAATCCATATTATATATT
1 AAAGAATCCATATTATATATT
219421384 AAAG
1 AAAG
219421388 GTTAAATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.35
Consensus pattern (21 bp):
AAAGAATCCATATTATATATT
Found at i:219421396 original size:21 final size:21
Alignment explanation
Indices: 219421342--219421396 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
219421332 TCGACCTTGA
**
219421342 AAAGAATCCATATTATATATT
1 AAAGAATAAATATTATATATT
**
219421363 AAAGAATCCATATTATATATT
1 AAAGAATAAATATTATATATT
**
219421384 AAAGGTTAAATAT
1 AAAGAATAAATAT
219421397 GTAATTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.36
Consensus pattern (21 bp):
AAAGAATAAATATTATATATT
Found at i:219426664 original size:13 final size:13
Alignment explanation
Indices: 219426646--219426679 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
219426636 GGGACACACG
219426646 CCCGTGTGACCTT
1 CCCGTGTGACCTT
219426659 CCCGTGTGACCTT
1 CCCGTGTGACCTT
219426672 CCCGTGTG
1 CCCGTGTG
219426680 CTTCACATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.38, G:0.26, T:0.29
Consensus pattern (13 bp):
CCCGTGTGACCTT
Found at i:219428489 original size:29 final size:29
Alignment explanation
Indices: 219428399--219428558 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
219428389 ACTCGATTTC
* * **
219428399 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
219428428 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
219428456 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
219428486 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
219428515 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
219428544 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
219428559 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:219436579 original size:29 final size:29
Alignment explanation
Indices: 219436489--219436648 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
219436479 ACTCGATTTC
* * **
219436489 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
219436518 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
219436546 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
219436576 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
219436605 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
219436634 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
219436649 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:219439568 original size:42 final size:42
Alignment explanation
Indices: 219439407--219439570 Score: 140
Period size: 42 Copynumber: 3.9 Consensus size: 42
219439397 TACCATACCA
* * *
219439407 ATGCCATATCCTAGATATCGTCTTACATGTAA-TCTCGTAT-C-G
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCT--TATACTG
* * * **
219439449 ATGCCAATAGCCCATCA-ATGGTCTTACAAGAAGTCCCATA-TCG
1 ATGCC-ATATCCCA-GATATGGTCTTACACGAAGTCTTATACT-G
* *
219439492 ATGCCATATCCCAAATATGGTCTTACACAAAGTCTTATACTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTTATACTG
*
219439534 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTTA
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTTA
219439571 GTAACCCTAA
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
41 3 0.03
42 68 0.69
43 26 0.27
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTTATACTG
Found at i:219441455 original size:27 final size:28
Alignment explanation
Indices: 219441425--219441494 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
219441415 ATAGTGAGTC
219441425 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
219441452 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
219441480 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
219441495 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:219449252 original size:28 final size:27
Alignment explanation
Indices: 219449189--219449258 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
219449179 ATAGTGAGTC
219449189 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
219449216 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
219449244 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
219449259 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:219457289 original size:2 final size:2
Alignment explanation
Indices: 219457282--219457331 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
219457272 AATGTTGCCA
219457282 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
219457324 AT AT AT AT
1 AT AT AT AT
219457332 TTAAAAATAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:219457691 original size:116 final size:116
Alignment explanation
Indices: 219457482--219457694 Score: 318
Period size: 116 Copynumber: 1.8 Consensus size: 116
219457472 TTATTAAGTA
* *
219457482 TTTTACTAAGTTGGTGCCACCCATCAACTCAGTCCCAACTCAATTAGGGAATTACCAAAAAGTTA
1 TTTTACTAAGTTGGTGCCACCCATCAACTCAGTCCCAACTCAATTAGGAAATTACCAAAAAATTA
*
219457547 ATTTATATGCTAAGTAAATTATATGATTAAGTAGGTGTCTTATTAAGATTT
66 ATTTATATGCTAAGCAAATTATATGATTAAGTAGGTGTCTTATTAAGATTT
* * * * * * *
219457598 TTTTTCTAAGTTGGTGCCACCCATTAACTGAGTCCTAACTCTATTTGTAAATTACCAAAAAATTA
1 TTTTACTAAGTTGGTGCCACCCATCAACTCAGTCCCAACTCAATTAGGAAATTACCAAAAAATTA
* *
219457663 TTTTATATGCTAAGCAAGTTATATGATTAAGT
66 ATTTATATGCTAAGCAAATTATATGATTAAGT
219457695 GTGTAACAGC
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
116 85 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (116 bp):
TTTTACTAAGTTGGTGCCACCCATCAACTCAGTCCCAACTCAATTAGGAAATTACCAAAAAATTA
ATTTATATGCTAAGCAAATTATATGATTAAGTAGGTGTCTTATTAAGATTT
Found at i:219459599 original size:22 final size:23
Alignment explanation
Indices: 219459574--219459619 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
219459564 AGGTGGGGGG
219459574 ATCGATGGTATTTTGAGGA-AGA
1 ATCGATGGTATTTTGAGGAGAGA
* *
219459596 ATCGATTGTATTTTGGGGAGAGA
1 ATCGATGGTATTTTGAGGAGAGA
219459619 A
1 A
219459620 GAGATTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.30, C:0.04, G:0.33, T:0.33
Consensus pattern (23 bp):
ATCGATGGTATTTTGAGGAGAGA
Found at i:219459625 original size:23 final size:22
Alignment explanation
Indices: 219459581--219459630 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
219459571 GGGATCGATG
**
219459581 GTATTTTGAGGAAGAATCGATT
1 GTATTTTGAGGAAGAAGAGATT
*
219459603 GTATTTTGGGGAGAGAAGAGATT
1 GTATTTTGAGGA-AGAAGAGATT
219459626 GTATT
1 GTATT
219459631 AGAGGGGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.30, C:0.02, G:0.32, T:0.36
Consensus pattern (22 bp):
GTATTTTGAGGAAGAAGAGATT
Found at i:219460287 original size:40 final size:40
Alignment explanation
Indices: 219460238--219460351 Score: 194
Period size: 40 Copynumber: 2.9 Consensus size: 40
219460228 TAAAGTATGT
219460238 TTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAG
1 TTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAG
*
219460278 TTTTAATTAATAATAAAAACAAAATAGTATGGGAGAATAG
1 TTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAG
* *
219460318 TTTTAATTAATAAT-AAAACAAAGTAGCATGGGGG
1 TTTTAATTAATAATAAAAACAAAATAGTATGGGGG
219460352 GAGTGGAATC
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
39 17 0.24
40 53 0.76
ACGTcount: A:0.49, C:0.04, G:0.18, T:0.30
Consensus pattern (40 bp):
TTTTAATTAATAATAAAAACAAAATAGTATGGGGGAATAG
Found at i:219471290 original size:193 final size:198
Alignment explanation
Indices: 219470795--219471333 Score: 799
Period size: 193 Copynumber: 2.8 Consensus size: 198
219470785 ACAGATATGG
*
219470795 CCTTCAGATG-TTAT-ACT-AAGCAGATCCAAGATGGTTTGCATCC-TGTGTTTACAA-GAGCAA
1 CCTTCAGATGATT-TCACTGAAGCAGAT-CAAGATGGTTTGCATCCTTGTGTTTACAAGGAACAA
*
219470855 ATCAAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAATCTAAGATGATTTGTCG
64 ATCGAAGACATAGCTGATTTGGCTTTCACGTGATTA-GA-GAAGCAAATCTAAGATGA-TTGTCG
*
219470920 TCT-TGTATTGTCAGAG-ACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATA
126 TCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATA
219470983 GCAGATCT
191 GCAGATCT
* *
219470991 CGCTTCAGATGATTTCACTGAAGCAGATCCA-ATGGTTGGCATCCTTGTGTTTACAAGGAACAAA
1 C-CTTCAGATGATTTCACTGAAGCAGATCAAGATGGTTTGCATCCTTGTGTTTACAAGGAACAAA
*
219471055 TCGAAGACATAGCTGATTTGGCTTTCACGTGA-TA-CGAAGCAAATCTAAGATGATTGTCGTCTC
65 TCGAAGACATAGCTGATTTGGCTTTCACGTGATTAGAGAAGCAAATCTAAGATGATTGTCGTCTC
*
219471118 TGTATCGTCAGAGAACGAATTGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAG
130 TGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAG
219471183 ATCT
195 ATCT
219471187 -CTT-AGATGATTTCACTG-AGCAGATCAAGATGGTTTGCATCCTTGTGTTTACAAGGAACAAAT
1 CCTTCAGATGATTTCACTGAAGCAGATCAAGATGGTTTGCATCCTTGTGTTTACAAGGAACAAAT
*
219471249 -GAAGAC-TAGCTGATTT-GCTTT-ACGTGATTATGAGAAAGCAAATCTATGATGATTGTCGTCT
66 CGAAGACATAGCTGATTTGGCTTTCACGTGATTA-GAG-AAGCAAATCTAAGATGATTGTCGTCT
*
219471310 CTGTATCGTCAG-GAACAAATCGAA
129 CTGTATCGTCAGAGAACGAATCGAA
219471334 TTGTCGTCTC
Statistics
Matches: 317, Mismatches: 13, Indels: 30
0.88 0.04 0.08
Matches are distributed among these distances:
189 6 0.02
190 7 0.02
191 10 0.03
192 26 0.08
193 84 0.26
194 12 0.04
195 30 0.09
196 55 0.17
197 22 0.07
198 20 0.06
199 45 0.14
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (198 bp):
CCTTCAGATGATTTCACTGAAGCAGATCAAGATGGTTTGCATCCTTGTGTTTACAAGGAACAAAT
CGAAGACATAGCTGATTTGGCTTTCACGTGATTAGAGAAGCAAATCTAAGATGATTGTCGTCTCT
GTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGA
TCT
Done.