Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 70 of 770
Found at i:20646616 original size:27 final size:27
Alignment explanation
Indices: 20646593--20646753 Score: 207
Period size: 27 Copynumber: 6.0 Consensus size: 27
20646583 CAAAATTATT
* *
20646593 GAAATACCCCTGTCGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
20646620 GAAACACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
20646647 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
20646674 GAAATACCCTTGTAGGGTAAAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
20646701 GAAATACCCCTGTAGGGTAGAATTA-C
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
20646727 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
20646754 ATTTTTCCCC
Statistics
Matches: 115, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
26 21 0.18
27 94 0.82
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:20646644 original size:54 final size:53
Alignment explanation
Indices: 20646584--20646752 Score: 248
Period size: 54 Copynumber: 3.2 Consensus size: 53
20646574 CTCGATTTAC
* * * *
20646584 AAAATTATTGAAATACCCCTGTCGGGTAGAATTATCGAAACACCCCTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTA-CGAAATACCCTTGTAGGGT
* *
20646638 AGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTA-CGAAATACCCTTGTAGGGT
* *
20646692 AAAATTACTGAAATACCCCTGTAGGGTAGAATTACGAGATACCCTTGTGGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTACGAAATACCCTTGTAGGGT
20646745 AAAATTAC
1 AAAATTAC
20646753 CATTTTTCCC
Statistics
Matches: 104, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 25 0.24
54 79 0.76
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (53 bp):
AAAATTACTGAAATACCCCTGTAGGGTAGAATTACGAAATACCCTTGTAGGGT
Found at i:20646996 original size:25 final size:25
Alignment explanation
Indices: 20646958--20647027 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
20646948 AGGAAGTGCT
* *
20646958 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
20646983 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
20647008 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
20647028 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:20647040 original size:24 final size:24
Alignment explanation
Indices: 20646957--20647040 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
20646947 GAGGAAGTGC
* *
20646957 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
20646982 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
20647006 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
20647030 TAAAAGAGGCT
1 TAAAAG-GGCT
20647041 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.15
25 39 0.75
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:20647051 original size:50 final size:50
Alignment explanation
Indices: 20646958--20647052 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
20646948 AGGAAGTGCT
**
20646958 AAAAGGGCTCTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTCTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
20647008 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTCTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
20647053 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTCTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:20647286 original size:31 final size:31
Alignment explanation
Indices: 20647248--20647450 Score: 334
Period size: 31 Copynumber: 6.5 Consensus size: 31
20647238 CGTTTACAGT
* *
20647248 AAAGGCTTTGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
20647279 AAAGGCTTCGGCCCTGTGATATGATTCATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
20647310 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
20647341 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
20647372 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
20647403 AAAGGCTTCAGCCTAGTGATAAGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
20647434 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
20647451 AACCGTTAAA
Statistics
Matches: 159, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 159 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:20649755 original size:27 final size:27
Alignment explanation
Indices: 20649717--20650130 Score: 347
Period size: 27 Copynumber: 15.3 Consensus size: 27
20649707 TTAGTTTACC
* *
20649717 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACCAAAATACCCTCAATTTGTA
* **
20649744 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-AATTTGTA
**
20649771 AAATTACCAAAATACCCTTGATTTGTA
1 AAATTACCAAAATACCCTCAATTTGTA
* *
20649798 AAATTACCAAAATACCC-CTAGTTTGTG
1 AAATTACCAAAATACCCTC-AATTTGTA
*
20649825 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACCAAAATACCCTC-AATTTGTA
* * *
20649852 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCAATTTGTA
*
20649879 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACCAAAATACCCTC-AATTTGTA
** * * *
20649906 AAATTACTGAAATACCCTCTACTTATA
1 AAATTACCAAAATACCCTCAATTTGTA
* * * **
20649933 AAATTGCCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCTCAATTTGTA
*
20649960 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTC-AATTTGTA
*
20649987 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACCAAAATACCCTC-AATTTGTA
* * * *
20650014 AAATTACCGAAATACCCTTAGTTTGCA
1 AAATTACCAAAATACCCTCAATTTGTA
*** *
20650041 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCAATTTGTA
**
20650068 AAATTACTGAAATACCCTCGAA-TTGTAA
1 AAATTACCAAAATACCCTC-AATTTGT-A
* * *
20650096 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCAATTTGTA
*
20650123 GAATTACC
1 AAATTACC
20650131 GTTTCACCCT
Statistics
Matches: 318, Mismatches: 58, Indels: 22
0.80 0.15 0.06
Matches are distributed among these distances:
26 2 0.01
27 293 0.92
28 23 0.07
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAATTTGTA
Found at i:20649783 original size:54 final size:54
Alignment explanation
Indices: 20649717--20650129 Score: 417
Period size: 54 Copynumber: 7.6 Consensus size: 54
20649707 TTAGTTTACC
* * * *
20649717 AAATTACTAAAATGCCCTCAATTTGTAAAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTAGTTTGTA
* * *
20649771 AAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTAGTTTGTA
* *
20649825 AAATTACCAAAATACCC-CTGATTTGTAAAATTACTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACTAAAATACCCCTAG-TTTGTA
* * * * *
20649879 AAATTACCAAAATACCC-CTAATTTGTGAAATTACTGAAATACCCTCTA-CTTATA
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACTAAAATACCC-CTAGTTTGTA
* * ** *
20649933 AAATTGCCAAAATACCCT-TAGTTTACAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTAAAATTACTAAAATACCCCTAGTTTGTA
** * *
20649987 AAATTACCAAAATACCC-CTGATTTGTAAAATTACCGAAATACCCTTAGTTTGCA
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACTAAAATACCCCTAGTTTGTA
*** * * *
20650041 AAATTATTGAAATACCCTCGATTTGTAAAATTACTGAAATA-CCCTCGAATTGTAA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTAG-TTTGT-A
* * *
20650096 AAATTACCAAAGTACCCTCGATTTATAGAATTAC
1 AAATTACCAAAATACCCTCGATTTGTAAAATTAC
20650130 CGTTTCACCC
Statistics
Matches: 300, Mismatches: 47, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
53 13 0.04
54 252 0.84
55 33 0.11
56 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTAGTTTGTA
Found at i:20649852 original size:81 final size:81
Alignment explanation
Indices: 20649738--20650130 Score: 454
Period size: 81 Copynumber: 4.8 Consensus size: 81
20649728 ATGCCCTCAA
*
20649738 TTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATT
1 TTTGTAAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATT
20649803 ACCAAAATACCCCTAG
66 ACCAAAATACCCCTAG
* * * * *
20649819 TTTGTGAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGACTTGTAAAATT
1 TTTGTAAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATT
*
20649884 ACCAAAATACCCCTAA
66 ACCAAAATACCCCTAG
* * * * * **
20649900 TTTGTGAAATTACTGAAATACCCTCT-ACTTATAAAATTGCCAAAATACCCTT-AGTTTACAAAA
1 TTTGTAAAATTACTAAAATACCC-CTGATTTGTAAAATTACCAAAATACCCTTGA-TTTGTAAAA
20649963 TTACCAAAATACCCCTAG
64 TTACCAAAATACCCCTAG
* * *
20649981 TTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTT-AGTTTGCAAAAT
1 TTTGTAAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGA-TTTGTAAAAT
*** *
20650045 TATTGAAATA-CCCTCG
65 TACCAAAATACCCCTAG
* * * * * *
20650061 ATTTGTAAAATTACTGAAATA-CCCTCGAATTGTAAAAATTACCAAAGTACCCTCGATTTATAGA
1 -TTTGTAAAATTACTAAAATACCCCT-GATTTGT-AAAATTACCAAAATACCCTTGATTTGTAAA
20650125 ATTACC
63 ATTACC
20650131 GTTTCACCCT
Statistics
Matches: 264, Mismatches: 41, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
80 12 0.05
81 223 0.84
82 28 0.11
83 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
TTTGTAAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATT
ACCAAAATACCCCTAG
Found at i:20650181 original size:27 final size:27
Alignment explanation
Indices: 20650151--20650317 Score: 212
Period size: 27 Copynumber: 6.2 Consensus size: 27
20650141 CGATTTACAA
* *
20650151 AATTATTGAAATACCCCTGTATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
20650178 AATTACCGAAACACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
20650205 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
20650232 AATTA-TCGAAATACCCTTGTAGGGTAA
1 AATTACT-GAAATACCCCTGTAGGGTAG
20650259 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
20650286 AATTAC-GAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
20650312 AATTAC
1 AATTAC
20650318 CATTTTGCCC
Statistics
Matches: 124, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
26 23 0.19
27 100 0.81
28 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:20650236 original size:81 final size:80
Alignment explanation
Indices: 20650149--20650316 Score: 246
Period size: 81 Copynumber: 2.1 Consensus size: 80
20650139 CTCGATTTAC
* * *
20650149 AAAATTATTGAAATACCCCTGTATGGTAGAATTACCGAAACACCCCTGTAGGGTAGAATTACTGA
1 AAAATTATCGAAATACCCCTGTAGGGTAAAATTACCGAAACACCCCTGTAGGGTAGAATTAC-GA
20650214 AATACCCTTGTAGGGT
65 AATACCCTTGTAGGGT
* * * * *
20650230 AGAATTATCGAAATACCCTTGTAGGGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACGAG
1 AAAATTATCGAAATACCCCTGTAGGGTAAAATTACCGAAACACCCCTGTAGGGTAGAATTACGAA
*
20650295 ATACCCTTGTGGGGT
66 ATACCCTTGTAGGGT
20650310 AAAATTA
1 AAAATTA
20650317 CCATTTTGCC
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 22 0.29
81 55 0.71
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (80 bp):
AAAATTATCGAAATACCCCTGTAGGGTAAAATTACCGAAACACCCCTGTAGGGTAGAATTACGAA
ATACCCTTGTAGGGT
Found at i:20650600 original size:25 final size:25
Alignment explanation
Indices: 20650523--20650603 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
20650513 AGGAAGTGCT
* ***
20650523 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATAA
*
20650548 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATAA
* *
20650573 AAAAGGGCTTTGGCCTAG-TTATTAA
1 AAAAGGGCTTTGCCCCAGTTTA-TAA
20650598 AAAAGG
1 AAAAGG
20650604 CTAGGCCTCC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
24 3 0.06
25 46 0.94
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATAA
Found at i:20650605 original size:24 final size:25
Alignment explanation
Indices: 20650523--20650584 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
20650513 AGGAAGTGCT
* * *
20650523 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
20650548 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
20650573 AAAAGGGCTTTG
1 AAAAGGGCTTTG
20650585 GCCTAGTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:20650851 original size:31 final size:31
Alignment explanation
Indices: 20650813--20650891 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
20650803 CGTTTACAGT
20650813 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
*
20650844 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGACCCAGTGATATGATTTATGA
20650875 AAAGGCTTCGACCCAGT
1 AAAGGCTTCGACCCAGT
20650892 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTGATATGATTTATGA
Found at i:20654890 original size:40 final size:40
Alignment explanation
Indices: 20654811--20654987 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
20654801 CGGATGATAA
* * * *
20654811 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
20654851 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
20654891 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
20654931 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
20654971 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
20654988 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 100 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:20655244 original size:22 final size:22
Alignment explanation
Indices: 20655216--20655260 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
20655206 GAATGTGCAT
*
20655216 ATATGAA-GTTATTCATTTAGTC
1 ATATGAATGTTATAC-TTTAGTC
20655238 ATATGAATGTTATACTTTAGTC
1 ATATGAATGTTATACTTTAGTC
20655260 A
1 A
20655261 AAACTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.44
Consensus pattern (22 bp):
ATATGAATGTTATACTTTAGTC
Found at i:20657086 original size:21 final size:21
Alignment explanation
Indices: 20657040--20657086 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
20657030 CATGTTTTAC
* *
20657040 TTTCTGTTTAGACTTTATGAG
1 TTTCTGTTTAGACTATACGAG
*
20657061 CTTCTGTTTA-ACTCATACGAG
1 TTTCTGTTTAGACT-ATACGAG
20657082 TTTCT
1 TTTCT
20657087 ATTCAGCTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (21 bp):
TTTCTGTTTAGACTATACGAG
Found at i:20657100 original size:21 final size:21
Alignment explanation
Indices: 20657058--20657150 Score: 91
Period size: 21 Copynumber: 4.5 Consensus size: 21
20657048 TAGACTTTAT
* * * *
20657058 GAGCTTCTGTTTAACTCATAC
1 GAGCTTCTATTCAGCTCTTAC
*
20657079 GAGTTTCTATTCAGCTCTTAC
1 GAGCTTCTATTCAGCTCTTAC
**
20657100 GAGCTTCTATTCAGCTCTTGT
1 GAGCTTCTATTCAGCTCTTAC
*
20657121 GAGCTTCTGTTCAGCT-TT-C
1 GAGCTTCTATTCAGCTCTTAC
*
20657140 GGGCTTCTATT
1 GAGCTTCTATT
20657151 AACAATGTAC
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
19 9 0.15
20 2 0.03
21 49 0.82
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.42
Consensus pattern (21 bp):
GAGCTTCTATTCAGCTCTTAC
Found at i:20657736 original size:21 final size:21
Alignment explanation
Indices: 20657712--20657756 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
20657702 TACTGTAGAT
* *
20657712 TTATTCATATGGACTGGTGTG
1 TTATGCATATGGAATGGTGTG
20657733 TTATGCATATGGAATGGTGTG
1 TTATGCATATGGAATGGTGTG
20657754 TTA
1 TTA
20657757 AACTTGTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.22, C:0.07, G:0.29, T:0.42
Consensus pattern (21 bp):
TTATGCATATGGAATGGTGTG
Found at i:20660294 original size:16 final size:15
Alignment explanation
Indices: 20660247--20660299 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
20660237 AAATAGATGA
20660247 ATATAAATAAATAAGT
1 ATATAAATAAATAA-T
* *
20660263 ATTTATATATAATAAT
1 ATATAAATA-AATAAT
20660279 ATATAAATAGAATAAT
1 ATATAAATA-AATAAT
*
20660295 TTATA
1 ATATA
20660300 TTTCAATTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
16 25 0.83
17 5 0.17
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.40
Consensus pattern (15 bp):
ATATAAATAAATAAT
Found at i:20667478 original size:12 final size:12
Alignment explanation
Indices: 20667461--20667487 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
20667451 TTTTAAATTA
20667461 TGTTAGACAACT
1 TGTTAGACAACT
20667473 TGTTAGACAACT
1 TGTTAGACAACT
20667485 TGT
1 TGT
20667488 GCTACTCGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (12 bp):
TGTTAGACAACT
Found at i:20668390 original size:28 final size:28
Alignment explanation
Indices: 20668358--20668441 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
20668348 AACTGTGATC
20668358 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
20668386 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
20668408 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
20668436 ACGTGT
1 ACGTGT
20668442 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:20668421 original size:50 final size:49
Alignment explanation
Indices: 20668310--20668498 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
20668300 TGAGGTCGCA
* * * * * *
20668310 TGTGTAGTAATAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* **
20668361 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * *
20668411 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * * *
20668460 TGTGTAGTACTATGTGTAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
20668499 GCTTTGGCTA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 40 0.34
50 45 0.38
51 32 0.27
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:20670876 original size:46 final size:48
Alignment explanation
Indices: 20670809--20671021 Score: 215
Period size: 46 Copynumber: 4.6 Consensus size: 48
20670799 AAGTTGACGC
* * *
20670809 CATGTCCCAGATAGGTCTTACACTAGCT-T-ATATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTAATATCTCGAGGCCGATG
* * * * *
20670855 CATGTCCCAGACATTTCTTACACTAGCTCT--CATCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTAATATCTCGAGGCCGATG
* *
20670901 CATGTCTCAGACATGTCTTACACTAGCT-TAAATATCTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCTCT-AATATCTCGAGGCCGATG
* * * * *
20670949 CATGTCCCAGACTTGTCTTACACTGGCTCTCATA-CT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTAATATCTCGAGGCCGATG
* *
20670995 CATGTCCTATACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
20671022 ACAGATATCA
Statistics
Matches: 136, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
45 1 0.01
46 92 0.68
47 3 0.02
48 39 0.29
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTAATATCTCGAGGCCGATG
Found at i:20670957 original size:94 final size:91
Alignment explanation
Indices: 20670809--20671021 Score: 270
Period size: 94 Copynumber: 2.3 Consensus size: 91
20670799 AAGTTGACGC
* * *
20670809 CATGTCCCAGATAGGTCTTACACTAGCTTATATCTCGAGGCCAATGCATGTCCCAGACATT-TCT
1 CATGT-CCAGACATGTCTTACACTAGCTTATATCTCGAGGCCAATACATGTCCCAGAC-TTGTCT
20670873 TACACTAGCTCTCAT-CTCAAT-GCTGATG
64 TACACTAGCTCTCATACT--ATGGCTGATG
*
20670901 CATGTCTCAGACATGTCTTACACTAGCTTAAATATCTCGAGGCCGATACATGTCCCAGACTTGTC
1 CATGTC-CAGACATGTCTTACACTAGCTT--ATATCTCGAGGCCAATACATGTCCCAGACTTGTC
* *
20670966 TTACACTGGCTCTCATACTGTGGCTGATG
63 TTACACTAGCTCTCATACTATGGCTGATG
*
20670995 CATGTCCTATACATGTCTTACACTAGC
1 CATGTCC-AGACATGTCTTACACTAGC
20671022 ACAGATATCA
Statistics
Matches: 107, Mismatches: 7, Indels: 12
0.85 0.06 0.10
Matches are distributed among these distances:
91 1 0.01
92 25 0.23
93 4 0.04
94 75 0.70
95 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (91 bp):
CATGTCCAGACATGTCTTACACTAGCTTATATCTCGAGGCCAATACATGTCCCAGACTTGTCTTA
CACTAGCTCTCATACTATGGCTGATG
Found at i:20676227 original size:41 final size:40
Alignment explanation
Indices: 20676145--20676318 Score: 280
Period size: 40 Copynumber: 4.3 Consensus size: 40
20676135 ATGATAACCA
20676145 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
*
20676185 GGCTAAGACCCGAAGGCATTTGTTGTGAGTTGCTATATCCG
1 GGCTAAGACCCGAAGGCATTTG-TGCGAGTTGCTATATCCG
*
20676226 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
* *
20676266 GGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
20676305 GGCTAA-ATCCCGAA
1 GGCTAAGA-CCCGAA
20676319 AATACTTGGG
Statistics
Matches: 125, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 11 0.09
40 74 0.59
41 39 0.31
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
Found at i:20676280 original size:81 final size:79
Alignment explanation
Indices: 20676145--20676318 Score: 278
Period size: 81 Copynumber: 2.2 Consensus size: 79
20676135 ATGATAACCA
20676145 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTTG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG-TG
*
20676210 TGAGTTGCTATATCC
65 CGAGTTGCTATATCC
* *
20676225 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTATCCGGGCTAGGACCCGAAGGCATTTGTG
1 -GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTG
*
20676290 CGAGTTGTTATATCC
65 CGAGTTGCTATATCC
20676305 GGCTAA-ATCCCGAA
1 GGCTAAGA-CCCGAA
20676319 AATACTTGGG
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
78 1 0.01
79 12 0.14
80 15 0.17
81 60 0.68
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (79 bp):
GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
GAGTTGCTATATCC
Found at i:20681310 original size:40 final size:40
Alignment explanation
Indices: 20681242--20681501 Score: 373
Period size: 40 Copynumber: 6.5 Consensus size: 40
20681232 CATTTGAATG
20681242 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
20681281 ATATCCGGGCTAAAACTCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
20681321 ATATCTGGGCTAAGACCCGAAGGCATTTTTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
20681361 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
20681401 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * * * *
20681441 ATGTCTGGGTTAAGACCCGAAGGTAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
20681481 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
20681502 AAACTTGGGT
Statistics
Matches: 198, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 25 0.13
40 172 0.87
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:20683952 original size:21 final size:20
Alignment explanation
Indices: 20683914--20683952 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
20683904 TTCTTGAAAT
*
20683914 AGGGCACACGCTCATGTGGA
1 AGGGCACACGCCCATGTGGA
*
20683934 AGGGCAACACGCCCGTGTG
1 AGGGC-ACACGCCCATGTG
20683953 ATCATTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.23, C:0.28, G:0.36, T:0.13
Consensus pattern (20 bp):
AGGGCACACGCCCATGTGGA
Found at i:20689560 original size:29 final size:29
Alignment explanation
Indices: 20689510--20689569 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
20689500 TAGGAATAGG
20689510 AAATTCCTTTAGGATATCTTAGATTAATT
1 AAATTCCTTTAGGATATCTTAGATTAATT
* * * *
20689539 AAATTCTTTTAGGTTATTTTAGGTTAATT
1 AAATTCCTTTAGGATATCTTAGATTAATT
20689568 AA
1 AA
20689570 TTTAATTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (29 bp):
AAATTCCTTTAGGATATCTTAGATTAATT
Found at i:20691219 original size:15 final size:14
Alignment explanation
Indices: 20691201--20691239 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
20691191 TCTCTTTTAA
20691201 ATTTATTTATTTTTC
1 ATTTATTTA-TTTTC
*
20691216 ATTTGTTTATTTTC
1 ATTTATTTATTTTC
20691230 ATTTAGTTTA
1 ATTTA-TTTA
20691240 ATTTAATTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.69
Consensus pattern (14 bp):
ATTTATTTATTTTC
Found at i:20706512 original size:83 final size:84
Alignment explanation
Indices: 20706414--20706601 Score: 279
Period size: 83 Copynumber: 2.2 Consensus size: 84
20706404 CAAGTTACAC
* * *
20706414 GCCCGTGTGCTAGGCCATGTGAACTCTTCTGAGTATTTCGTTTTGCAAATTAATAGATGCAGGGG
1 GCCCGTATGCTAGGCCATGTGAACACTTCTGAGTATTTCGTTTTGCAAATTAATAGATGCAGGGA
*
20706479 ACACACG-GCAAACCACAT
66 ACACACGACCAAACCACAT
* *
20706497 GCCCGTATGTTAGGCCATGTGAACACTTTTGAGTATTTCGTTTTGCAAATTAATAGATGCAGGGA
1 GCCCGTATGCTAGGCCATGTGAACACTTCTGAGTATTTCGTTTTGCAAATTAATAGATGCAGGGA
*
20706562 ACACATGACCAAACCACAT
66 ACACACGACCAAACCACAT
* * *
20706581 GCCCATGTGCTAGGCCGTGTG
1 GCCCGTATGCTAGGCCATGTG
20706602 TCACACACGG
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
83 66 0.71
84 27 0.29
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (84 bp):
GCCCGTATGCTAGGCCATGTGAACACTTCTGAGTATTTCGTTTTGCAAATTAATAGATGCAGGGA
ACACACGACCAAACCACAT
Found at i:20707359 original size:21 final size:21
Alignment explanation
Indices: 20707330--20707369 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
20707320 TACATGAGTA
*
20707330 TTTTGATGTTTAATGATAGAT
1 TTTTAATGTTTAATGATAGAT
*
20707351 TTTTAATGTTTGATGATAG
1 TTTTAATGTTTAATGATAG
20707370 TTATACAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.20, T:0.53
Consensus pattern (21 bp):
TTTTAATGTTTAATGATAGAT
Found at i:20708006 original size:48 final size:48
Alignment explanation
Indices: 20707930--20708160 Score: 284
Period size: 48 Copynumber: 4.8 Consensus size: 48
20707920 TGTCATTGGG
* *
20707930 GATACATTGATTTGGCTTCAGGCCATGATATCAGCACTTCGGGTGCCA
1 GATACATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGCAA
* ** ** **
20707978 GCTTTATTGATTTGGCTTCAGGCCATGATATCGGCACTTTAGGTGCAA
1 GATACATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGCAA
* * * * *
20708026 GCTTCATTGATTTGGCTTCGGGCTATGATATTAGCACTTCGGGTGCGA
1 GATACATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGCAA
* *
20708074 GATACATTGAGTAT-GCTTCAGGCCATGATATTAGCACTTTGGGTGCAA
1 GATACATTGA-TTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGCAA
* *
20708122 GATACATTGAGTTAGCTTCAGGCCATGATATTAGCACTT
1 GATACATTGATTTGGCTTCAGGCCATGATATTAGCACTT
20708161 AGTGTGCGAG
Statistics
Matches: 157, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
47 1 0.01
48 154 0.98
49 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (48 bp):
GATACATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGCAA
Found at i:20708098 original size:96 final size:96
Alignment explanation
Indices: 20707930--20708171 Score: 315
Period size: 96 Copynumber: 2.5 Consensus size: 96
20707920 TGTCATTGGG
* * * ** *
20707930 GATACATTGATTTGGCTTCAGGCCATGATATCAGCACTTCGGGTGCCAGCTTTATTGATTTGGCT
1 GATACATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGCGAGATACATTGATATGGCT
*
20707995 TCAGGCCATGATATCGGCACTTTAGGTGCAA
66 TCAGGCCATGATATCAGCACTTTAGGTGCAA
* * * *
20708026 GCTTCATTGATTTGGCTTCGGGCTATGATATTAGCACTTCGGGTGCGAGATACATTGAGTAT-GC
1 GATACATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGCGAGATACATTGA-TATGGC
* *
20708090 TTCAGGCCATGATATTAGCACTTTGGGTGCAA
65 TTCAGGCCATGATATCAGCACTTTAGGTGCAA
* * * *
20708122 GATACATTGAGTTAGCTTCAGGCCATGATATTAGCACTTAGTGTGCGAGA
1 GATACATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGCGAGA
20708172 CTCCTGAGTA
Statistics
Matches: 124, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
96 122 0.98
97 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (96 bp):
GATACATTGATTTGGCTTCAGGCCATGATATTAGCACTTCGGGTGCGAGATACATTGATATGGCT
TCAGGCCATGATATCAGCACTTTAGGTGCAA
Found at i:20712676 original size:17 final size:18
Alignment explanation
Indices: 20712650--20712684 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
20712640 CCAATTGGCT
20712650 CGTGTAGG-CCACACGAG
1 CGTGTAGGCCCACACGAG
*
20712667 CGTGTGGGCCCACACGAG
1 CGTGTAGGCCCACACGAG
20712685 TAAATTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.20, C:0.31, G:0.37, T:0.11
Consensus pattern (18 bp):
CGTGTAGGCCCACACGAG
Found at i:20717598 original size:118 final size:118
Alignment explanation
Indices: 20717389--20717625 Score: 456
Period size: 118 Copynumber: 2.0 Consensus size: 118
20717379 GTCACACGCC
20717389 CGTGTAAGTAGGCCGTGTGATTCACATGACCAAGTGACATGCCCATGTCTCAAGAGGTGTGGGTA
1 CGTGTAAGTAGGCCGTGTGATTCACATGACCAAGTGACATGCCCATGTCTCAAGAGGTGTGGGTA
*
20717454 TTCAATGTGAGGCACACGGCTGTGTCCCAGTCTGTATCTTTACCCATGTAACT
66 TTCAATGTGAGGCACACGGCTATGTCCCAGTCTGTATCTTTACCCATGTAACT
20717507 CGTGTAAGTAGGCCGTGTGATTCACATGACCAAGTGACATGCCCATGTCTCAAGAGGTGTGGGTA
1 CGTGTAAGTAGGCCGTGTGATTCACATGACCAAGTGACATGCCCATGTCTCAAGAGGTGTGGGTA
*
20717572 TTCGATGTGAGGCACACGGCTATGTCCCAGTCTGTATCTTTACCCATGTAACT
66 TTCAATGTGAGGCACACGGCTATGTCCCAGTCTGTATCTTTACCCATGTAACT
20717625 C
1 C
20717626 TCTGATTTGT
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 117 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (118 bp):
CGTGTAAGTAGGCCGTGTGATTCACATGACCAAGTGACATGCCCATGTCTCAAGAGGTGTGGGTA
TTCAATGTGAGGCACACGGCTATGTCCCAGTCTGTATCTTTACCCATGTAACT
Found at i:20717663 original size:16 final size:16
Alignment explanation
Indices: 20717642--20717675 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
20717632 TTGTGCCACA
20717642 CGGCCTGCCATACTCC
1 CGGCCTGCCATACTCC
20717658 CGGCCTGCCATACTCC
1 CGGCCTGCCATACTCC
20717674 CG
1 CG
20717676 TGTGCTAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.50, G:0.21, T:0.18
Consensus pattern (16 bp):
CGGCCTGCCATACTCC
Found at i:20723978 original size:125 final size:127
Alignment explanation
Indices: 20723805--20724057 Score: 325
Period size: 125 Copynumber: 2.0 Consensus size: 127
20723795 ACCCCCTCCC
* ** *
20723805 ATTTTCCCCCTAAAACTTTTATTCTCTTCCCATCCCAACCCCTTCTACCCCAAACCCATTTCCCT
1 ATTTTCCCCCTAAAACTTTTATACTCTTCCCATCCCAACCCCTTCTACCCCAAACCCATCCCCCC
** * *
20723870 TG-AATTTTTTTTTGAATAT-TTCCCCTCAAAATTTTACTCCCTAAACTCCCAAAACTTTTT
66 TGCAATTTTTTTTTGAATATCCCCCCCCCAAAATTTTACTCCCTAAACCCCCAAAACTTTTT
*
20723930 ATTTTCCCCC-AAAACTTTTACTACTC-TCCCATCCCACCTCCCTTCTACCCCAAACCCATCCCC
1 ATTTTCCCCCTAAAACTTTTA-TACTCTTCCCATCCCAAC-CCCTTCTACCCCAAACCCATCCCC
* * * *
20723993 CCTGCCAATTTTTTTTTTAATATCCCCCCCCCCAAAATTTTATTCCTTCAACCCCCAAAACTTTT
64 CCTG-CAATTTTTTTTTGAATAT-CCCCCCCCCAAAATTTTACTCCCTAAACCCCCAAAACTTTT
20724058 ACTTCTCACT
Statistics
Matches: 109, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
124 21 0.19
125 39 0.36
127 16 0.15
129 33 0.30
ACGTcount: A:0.24, C:0.39, G:0.01, T:0.36
Consensus pattern (127 bp):
ATTTTCCCCCTAAAACTTTTATACTCTTCCCATCCCAACCCCTTCTACCCCAAACCCATCCCCCC
TGCAATTTTTTTTTGAATATCCCCCCCCCAAAATTTTACTCCCTAAACCCCCAAAACTTTTT
Found at i:20724361 original size:18 final size:18
Alignment explanation
Indices: 20724324--20724361 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
20724314 TAAAAATCAC
*
20724324 ATTTTTTACATTTAATAT
1 ATTTTTTACATTTAAAAT
20724342 ATTTTTTA-ATTTCAAAAT
1 ATTTTTTACATTT-AAAAT
20724360 AT
1 AT
20724362 ATAATGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTTACATTTAAAAT
Found at i:20725622 original size:15 final size:16
Alignment explanation
Indices: 20725591--20725622 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
20725581 ATAAATTTTT
20725591 TAAAGTTAATATCTAA
1 TAAAGTTAATATCTAA
20725607 TAAAGTTAAT-TCTAA
1 TAAAGTTAATATCTAA
20725622 T
1 T
20725623 TGTTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (16 bp):
TAAAGTTAATATCTAA
Found at i:20725916 original size:15 final size:14
Alignment explanation
Indices: 20725891--20725938 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
20725881 AAAATTTTAA
*
20725891 AAATTAAAAAAATT
1 AAATTATAAAAATT
*
20725905 AAATTACTAAAAATA
1 AAATTA-TAAAAATT
* *
20725920 AAAATATAAAAACT
1 AAATTATAAAAATT
20725934 AAATT
1 AAATT
20725939 TCAAATTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (14 bp):
AAATTATAAAAATT
Found at i:20731275 original size:17 final size:17
Alignment explanation
Indices: 20731245--20731277 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
20731235 TAAAAATAAT
20731245 ATTTTATTAAGATATTA
1 ATTTTATTAAGATATTA
20731262 ATTTT-TTAATGATATT
1 ATTTTATTAA-GATATT
20731278 TTATGTACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (17 bp):
ATTTTATTAAGATATTA
Found at i:20734557 original size:33 final size:33
Alignment explanation
Indices: 20734472--20734559 Score: 92
Period size: 33 Copynumber: 2.7 Consensus size: 33
20734462 TATTTACACC
* **
20734472 TTGTGTGTA-TACTT-GAAAGGTTAGGTATACT
1 TTGTGTGTACCACTTGGAAAGGAAAGGTATACT
* * *
20734503 TTGTGTATGCCA-TATGAAAAGGAAAGGTATACT
1 TTGTGTGTACCACT-TGGAAAGGAAAGGTATACT
20734536 TTGTGTGTACCACTTGGAAAGGAA
1 TTGTGTGTACCACTTGGAAAGGAA
20734560 TGTACACCTT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
31 8 0.18
32 2 0.05
33 33 0.75
34 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (33 bp):
TTGTGTGTACCACTTGGAAAGGAAAGGTATACT
Found at i:20736975 original size:45 final size:47
Alignment explanation
Indices: 20736910--20737036 Score: 177
Period size: 45 Copynumber: 2.7 Consensus size: 47
20736900 CGGTGTTGAG
*
20736910 ACGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCGCCAC-AT-T
1 ACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGCCACGATAT
** * *
20736955 GTGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCACGTATAT
1 ACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGCCACG-ATAT
20737003 ACGAGAGCTAGTGTAAGACGATGTCTGGGACATG
1 ACGAGAGCTAGTGTAAGAC-ATGTCTGGGACATG
20737037 GCGTCGGCAA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
45 38 0.54
47 2 0.03
48 17 0.24
49 14 0.20
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
ACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGCCACGATAT
Found at i:20742998 original size:46 final size:46
Alignment explanation
Indices: 20742852--20743073 Score: 225
Period size: 46 Copynumber: 4.7 Consensus size: 46
20742842 TTTGTGCGCC
* * *
20742852 AGTGTAAGACATGTCTGGAACATGCATCGGCCACATTATGA-TAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGT-GCT
** *** * *
20742898 AGTGTAAGACCATGTCTGGGACATGGCATTGGCGTTGA-GATGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CACATTATGAGTGCT
20742946 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGTGCT
* **
20742992 AGTGTAAGACATGTCTGGGACATGCATCAG-CACGTATATACGAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AT-TATGAGTGCT
20743040 AGTGTAAGACCATGTCTGGGACATGGCATCAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCC
20743074 TCGAAGATGA
Statistics
Matches: 147, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
45 4 0.03
46 53 0.36
47 29 0.20
48 38 0.26
49 15 0.10
50 7 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGTGCT
Found at i:20743041 original size:94 final size:94
Alignment explanation
Indices: 20742852--20743115 Score: 302
Period size: 94 Copynumber: 2.8 Consensus size: 94
20742842 TTTGTGCGCC
* *
20742852 AGTGTAAGACATGTCTGGAACATGCATCGGCCACATTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCCAGTGTAAGACCATGTCTGG
* * * **
20742917 GACATGGCATTGGCGTTGAGATGAGGGCT
66 GACATGGCATAGACGTTGAGACGAAAGCT
*
20742946 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGT-GCTAGTGTAAGA-CATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGA-TAGCCAGTGTAAGACCATGTCTG
*
20743009 GGACAT-GCATCAGCACGTAT-ATACGAAAGCT
65 GGACATGGCAT-AG-ACGT-TGAGACGAAAGCT
* ** * * *
20743040 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAAGATGACAACCATTGTAAGACCATGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATTATGATAGCCAGTGTAAGACCATGTC
20743105 TGGGACATGGC
63 TGGGACATGGC
20743116 GTCGGCAACT
Statistics
Matches: 144, Mismatches: 16, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
92 4 0.03
93 15 0.10
94 69 0.48
95 16 0.11
96 10 0.07
97 14 0.10
98 14 0.10
99 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATAGACGTTGAGACGAAAGCT
Found at i:20743095 original size:49 final size:49
Alignment explanation
Indices: 20742852--20743115 Score: 199
Period size: 46 Copynumber: 5.6 Consensus size: 49
20742842 TTTGTGCGCC
* * ** * * *
20742852 AGTGTAAGA-CATGTCTGGAACAT-GCATCGGCCAC-ATTATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGAAGATGACAACT
** *** ***
20742898 AGTGTAAGACCATGTCTGGGACATGGCATTGGCGTTG-AGATGAGGGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGAAGATGACAACT
** ***
20742946 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATTATGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGAAGATGACAACT
* *
20742992 AGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CACGTATAT-ACGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGAAGATGAC--AA-CT
* *
20743040 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAAGATGACAACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGAAGATGACAACT
*
20743089 ATTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACCATGTCTGGGACATGGC
20743116 GTCGGCAACT
Statistics
Matches: 178, Mismatches: 28, Indels: 21
0.78 0.12 0.09
Matches are distributed among these distances:
45 4 0.02
46 56 0.31
47 27 0.15
48 33 0.19
49 41 0.23
50 9 0.05
51 6 0.03
52 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGAAGATGACAACT
Found at i:20749931 original size:79 final size:82
Alignment explanation
Indices: 20749791--20749975 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
20749781 TCGAATGATG
* * *
20749791 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
20749855 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
20749871 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
20749933 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
20749951 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
20749976 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:20749983 original size:40 final size:40
Alignment explanation
Indices: 20749792--20749983 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
20749782 CGAATGATGT
* * * * *
20749792 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
20749832 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
20749872 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
20749911 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
20749951 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
20749984 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:20750006 original size:79 final size:79
Alignment explanation
Indices: 20749791--20750008 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
20749781 TCGAATGATG
* * * * ** *
20749791 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
20749854 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
20749871 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
20749936 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
20749951 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
20750009 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:20757836 original size:40 final size:39
Alignment explanation
Indices: 20757779--20757963 Score: 149
Period size: 40 Copynumber: 4.6 Consensus size: 39
20757769 TCGAATGATG
* * *
20757779 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * *
20757819 TCCGGACTAGGATCCGAAGGCATTCGTGCAAGTTAATAAA
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
*
20757859 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGACTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
* ** * * *
20757898 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCAAGTTACTA-AA
* **
20757939 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGACTAAG-CCCGAAGGCATTTG
20757964 AGCGAGTCGT
Statistics
Matches: 120, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 34 0.28
40 78 0.65
41 8 0.07
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:20757919 original size:79 final size:82
Alignment explanation
Indices: 20757779--20757963 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
20757769 TCGAATGATG
* * *
20757779 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
20757843 CGTGCAAGTTAATA-AA
66 CGTGCAAGTCAATATAA
* **
20757859 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
* *
20757921 TCGTGCGAGTCACTATAA
65 TCGTGCAAGTCAATATAA
**
20757939 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
20757964 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCAAGTCAATATAA
Found at i:20757994 original size:79 final size:79
Alignment explanation
Indices: 20757779--20757996 Score: 174
Period size: 79 Copynumber: 2.7 Consensus size: 79
20757769 TCGAATGATG
* * * * ** *
20757779 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
20757842 TCGTGCAAGTTAATAAA
63 TCGTGCAAGTCAATAAA
* * * *
20757859 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
* *
20757924 TGCGAGTCACTATAA
66 TGCAAGTCAATA-AA
** * ** * *
20757939 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
20757997 TACGTGATTC
Statistics
Matches: 112, Mismatches: 22, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
79 68 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:20760307 original size:29 final size:28
Alignment explanation
Indices: 20760240--20760307 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
20760230 AAACGTTTAC
20760240 ATTTTGAAAAAAATTCCTAAATGGAAGCA
1 ATTTTG-AAAAAATTCCTAAATGGAAGCA
*
20760269 ATTTTGAAAAAGTTCCTAAATGGAAGCA
1 ATTTTGAAAAAATTCCTAAATGGAAGCA
* *
20760297 TTTTTGTAAAA
1 ATTTTGAAAAA
20760308 TTAACCTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
28 30 0.83
29 6 0.17
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.32
Consensus pattern (28 bp):
ATTTTGAAAAAATTCCTAAATGGAAGCA
Found at i:20764283 original size:23 final size:21
Alignment explanation
Indices: 20764245--20764289 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 21
20764235 ATTGAGTGAA
20764245 AAATTAAATAAAATAAAAAAT
1 AAATTAAATAAAATAAAAAAT
20764266 AAATTAAATTTAAAATAAAAAAT
1 AAATTAAA--TAAAATAAAAAAT
20764289 A
1 A
20764290 GTTAAACCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 8 0.36
23 14 0.64
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (21 bp):
AAATTAAATAAAATAAAAAAT
Found at i:20764301 original size:22 final size:23
Alignment explanation
Indices: 20764245--20764302 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
20764235 ATTGAGTGAA
20764245 AAATTAAA--TAAAATAAAAAAT
1 AAATTAAACCTAAAATAAAAAAT
**
20764266 AAATTAAATTTAAAATAAAAAAT
1 AAATTAAACCTAAAATAAAAAAT
*
20764289 -AGTTAAACCTAAAA
1 AAATTAAACCTAAAA
20764303 AGCATTTAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.25
22 11 0.34
23 13 0.41
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (23 bp):
AAATTAAACCTAAAATAAAAAAT
Found at i:20765336 original size:280 final size:278
Alignment explanation
Indices: 20764833--20765363 Score: 769
Period size: 280 Copynumber: 1.9 Consensus size: 278
20764823 ATATTTATAA
** *
20764833 ACTGAAATAATCGAAAATGTATCTATAACAAAAAATAATTTAAAATTACAGACTCCACTAAAATC
1 ACTGAAATAATCGAAAATGTATCTATAACAAAAAATAATTTAAAACAACAAACTCCACTAAAATC
* *
20764898 TAATTAATATCCTGAAACAATGTTACACCCATGAGTAGTGTTCCCATAAAAACCTTGGGTGGTAG
66 GAATTAATATCCTGAAACAATGTTACACCCATGAGCAGTGTTCCCATAAAAACCTTGGGTGGTAG
* * * *
20764963 TCCTTTAGTAAGCGAATTCGCAATTATGGAGTTTGTTTTAATATATTTTATAAACACCTGATCAC
131 TCCTTTAGTAAGCGAATTCGCAATTATGGAGTTTGTCTCAATATACTTTATAAACACCTGACCAC
*
20765028 TTTAAACTCTTATTTTAACACCTAGGAATTTAAAGCCCATGTACATTGACTTTGATGCCCTCTTG
196 TTTAAACTCTTATTTTAACAACTAGGAATTTAAAGCCCATGTACATTGACTTTGATGCCCTCTTG
20765093 TTGTTATTGGAATAAAGG
261 TTGTTATTGGAATAAAGG
* * *
20765111 ACTGAAATAA-CTGAAAATGTGTCTATAACAGAAAAT-ATTTAAAACAACAAACTCCTACTAAAT
1 ACTGAAATAATC-GAAAATGTATCTATAACAAAAAATAATTTAAAACAACAAACTCC-ACTAAAA
* * * *
20765174 TCGAATTAATATCTTGAAACGATGTTATATCCATATGAGCAGTGTTCCCATAAAAACCTTGGGTG
64 TCGAATTAATATCCTGAAACAATGTTACA-CC-CATGAGCAGTGTTCCCATAAAAACCTTGGGTG
* * *
20765239 GTAGTCCTTTAGTAAGTGAATTCGCAATTATGGAGTTTGTCTCAGTATACTTTATAGACACCTGA
127 GTAGTCCTTTAGTAAGCGAATTCGCAATTATGGAGTTTGTCTCAATATACTTTATAAACACCTGA
* * ** * * *
20765304 CCACTTTGAACTCTTATTTTAACAATTAGGAATTTGGAGTCTATGTGCATTGACTTTGAT
192 CCACTTTAAACTCTTATTTTAACAACTAGGAATTTAAAGCCCATGTACATTGACTTTGAT
20765364 ATCTTCCTAT
Statistics
Matches: 222, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
277 17 0.08
278 63 0.28
279 2 0.01
280 140 0.63
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (278 bp):
ACTGAAATAATCGAAAATGTATCTATAACAAAAAATAATTTAAAACAACAAACTCCACTAAAATC
GAATTAATATCCTGAAACAATGTTACACCCATGAGCAGTGTTCCCATAAAAACCTTGGGTGGTAG
TCCTTTAGTAAGCGAATTCGCAATTATGGAGTTTGTCTCAATATACTTTATAAACACCTGACCAC
TTTAAACTCTTATTTTAACAACTAGGAATTTAAAGCCCATGTACATTGACTTTGATGCCCTCTTG
TTGTTATTGGAATAAAGG
Found at i:20766736 original size:2 final size:2
Alignment explanation
Indices: 20766729--20766758 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
20766719 TGGGTAAGTG
20766729 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20766759 GAGAGAGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20774781 original size:22 final size:23
Alignment explanation
Indices: 20774753--20774800 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
20774743 CTCGATTCTA
*
20774753 TTTT-AAATCTACTCATATTATT
1 TTTTAAAATATACTCATATTATT
* *
20774775 TTTTAAAATATATTTATATTATT
1 TTTTAAAATATACTCATATTATT
20774798 TTT
1 TTT
20774801 AATTTAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTAAAATATACTCATATTATT
Found at i:20774810 original size:23 final size:24
Alignment explanation
Indices: 20774767--20774818 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
20774757 AAATCTACTC
20774767 ATATTATTTTTTAAAATATATTT-
1 ATATTATTTTTTAAAATATATTTA
**
20774790 ATATTA-TTTTTAATTTAATATTTA
1 ATATTATTTTTTAAAAT-ATATTTA
20774814 ATATT
1 ATATT
20774819 TAATATATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 8 0.32
23 12 0.48
24 5 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
ATATTATTTTTTAAAATATATTTA
Found at i:20777004 original size:30 final size:30
Alignment explanation
Indices: 20776969--20777026 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
20776959 TATAGAAAAA
20776969 TAACTTACATTAGTAGATAATCTAAACGAG
1 TAACTTACATTAGTAGATAATCTAAACGAG
20776999 TAACTTACATTAGTAGATAATCTAAACG
1 TAACTTACATTAGTAGATAATCTAAACG
20777027 CCTCCTTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (30 bp):
TAACTTACATTAGTAGATAATCTAAACGAG
Found at i:20783117 original size:13 final size:13
Alignment explanation
Indices: 20783099--20783124 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20783089 CTAATGGGAA
20783099 ATTATAGGATATT
1 ATTATAGGATATT
20783112 ATTATAGGATATT
1 ATTATAGGATATT
20783125 GTCTTTTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (13 bp):
ATTATAGGATATT
Found at i:20783239 original size:17 final size:17
Alignment explanation
Indices: 20783217--20783251 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
20783207 TCGGCAATTA
*
20783217 ATAAAATTTTTAAATAT
1 ATAAAATTATTAAATAT
*
20783234 ATAAAATTATTGAATAT
1 ATAAAATTATTAAATAT
20783251 A
1 A
20783252 ATTGAATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
ATAAAATTATTAAATAT
Found at i:20783782 original size:20 final size:21
Alignment explanation
Indices: 20783745--20783783 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
20783735 ATTTTTAAAG
20783745 ATTACTTATTTTTATAATTAT
1 ATTACTTATTTTTATAATTAT
20783766 ATTACTTATTTTT-TAATT
1 ATTACTTATTTTTATAATT
20783784 CTAATATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTACTTATTTTTATAATTAT
Found at i:20784211 original size:7 final size:7
Alignment explanation
Indices: 20784199--20784228 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
20784189 AATGTGTTAA
20784199 AAATTGC
1 AAATTGC
20784206 AAATTGC
1 AAATTGC
20784213 AAATTGC
1 AAATTGC
20784220 AAATTGC
1 AAATTGC
20784227 AA
1 AA
20784229 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (7 bp):
AAATTGC
Found at i:20784235 original size:2 final size:2
Alignment explanation
Indices: 20784228--20784273 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
20784218 GCAAATTGCA
20784228 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20784270 AT AT
1 AT AT
20784274 TCGAAATTTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20786148 original size:3 final size:3
Alignment explanation
Indices: 20786140--20786173 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
20786130 CTCACGACCC
20786140 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
20786174 CAATCACGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:20791375 original size:20 final size:20
Alignment explanation
Indices: 20791349--20791430 Score: 85
Period size: 20 Copynumber: 4.0 Consensus size: 20
20791339 AGTTTCACAT
20791349 AAGGGATCGCATAACAGTTA
1 AAGGGATCGCATAACAGTTA
*
20791369 GAGGGATCGCATAACAGTTTTA
1 AAGGGATCGCATAACAG--TTA
*
20791391 CAA-GGATTCGCATAACAGCTA
1 -AAGGGA-TCGCATAACAGTTA
* *
20791412 AAGGGATCACATAATAGTT
1 AAGGGATCGCATAACAGTT
20791431 CTACAATAGC
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
20 28 0.55
21 5 0.10
22 6 0.12
23 12 0.24
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (20 bp):
AAGGGATCGCATAACAGTTA
Found at i:20791417 original size:43 final size:44
Alignment explanation
Indices: 20791308--20791436 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 44
20791298 TACATATGGG
* * *
20791308 TTCGCATACATAGTTAAAGGGATCACATAGCAGTTTCACATAAGGGA
1 TTCGCATA-ACAGTTAAAGGGATCACATAACAGTTTTAC--AAGGGA
* *
20791355 -TCGCATAACAGTTAGAGGGATCGCATAACAGTTTTACAA-GGA
1 TTCGCATAACAGTTAAAGGGATCACATAACAGTTTTACAAGGGA
* * *
20791397 TTCGCATAACAGCTAAAGGGATCACATAATAGTTCTACAA
1 TTCGCATAACAGTTAAAGGGATCACATAACAGTTTTACAA
20791437 TAGCGTTAGC
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 3 0.04
43 36 0.51
45 25 0.35
46 7 0.10
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (44 bp):
TTCGCATAACAGTTAAAGGGATCACATAACAGTTTTACAAGGGA
Found at i:20791540 original size:24 final size:24
Alignment explanation
Indices: 20791499--20791582 Score: 116
Period size: 24 Copynumber: 3.5 Consensus size: 24
20791489 CGGATAACAT
*
20791499 TCAT-TAAGAGTTCACATACTAAA
1 TCATATAAGGGTTCACATACTAAA
* *
20791522 TCACATAAAGGTTCACATACTAAA
1 TCATATAAGGGTTCACATACTAAA
**
20791546 TCATATGGGGGTTCACATACTAAA
1 TCATATAAGGGTTCACATACTAAA
20791570 TCATATAAGGGTT
1 TCATATAAGGGTT
20791583 TGCATGAAAG
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
23 3 0.06
24 48 0.94
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (24 bp):
TCATATAAGGGTTCACATACTAAA
Found at i:20794700 original size:21 final size:19
Alignment explanation
Indices: 20794676--20794721 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 19
20794666 TAAAAAATTC
20794676 AAAAATATATATAATCTATAA
1 AAAAATATATA-AAT-TATAA
*
20794697 AAAAACATATAAATTATAA
1 AAAAATATATAAATTATAA
20794716 AAAAAT
1 AAAAAT
20794722 GATAAACGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 10 0.43
20 3 0.13
21 10 0.43
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAAATATATAAATTATAA
Found at i:20794797 original size:18 final size:20
Alignment explanation
Indices: 20794774--20794811 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
20794764 AATGTAAAAG
20794774 AAAAC-TTGTAA-AAATTAT
1 AAAACTTTGTAACAAATTAT
20794792 AAAACTTTGTAACAAATTAT
1 AAAACTTTGTAACAAATTAT
20794812 TTAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 6 0.33
20 7 0.39
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
AAAACTTTGTAACAAATTAT
Found at i:20796838 original size:27 final size:26
Alignment explanation
Indices: 20796758--20796838 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 26
20796748 TCTACTTTGC
* *
20796758 AAAAATTAG-AAAATATGTTTGATAAAT
1 AAAAA-TAGAAAAATAT-TTTCAAAAAT
** *
20796785 AAAAATAGAAATTTATTTTCAATAAT
1 AAAAATAGAAAAATATTTTCAAAAAT
20796811 AAAAATAGTAAAAATATTCTT-AAAAAT
1 AAAAATAG-AAAAATATT-TTCAAAAAT
20796838 A
1 A
20796839 TAAGAAAAAG
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
26 18 0.42
27 23 0.53
28 2 0.05
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.33
Consensus pattern (26 bp):
AAAAATAGAAAAATATTTTCAAAAAT
Found at i:20797270 original size:26 final size:26
Alignment explanation
Indices: 20797240--20797290 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20797230 TCATTAGAAG
*
20797240 TAGATCTTTATTCTATTTATATTTCA
1 TAGATCTCTATTCTATTTATATTTCA
20797266 TAGATCTCTATTCTATTTATATTTC
1 TAGATCTCTATTCTATTTATATTTC
20797291 TTATACCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.14, G:0.04, T:0.57
Consensus pattern (26 bp):
TAGATCTCTATTCTATTTATATTTCA
Found at i:20797934 original size:19 final size:19
Alignment explanation
Indices: 20797904--20797954 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
20797894 TAATGTAAAA
*
20797904 TTTAAGTAATTTTATATTTT
1 TTTAA-TAATTTTATATGTT
* *
20797924 TTTTATAATTTTTTATGTT
1 TTTAATAATTTTATATGTT
20797943 TTTAAT-ATTTTA
1 TTTAATAATTTTA
20797955 ACAACTTAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 5 0.19
19 17 0.65
20 4 0.15
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (19 bp):
TTTAATAATTTTATATGTT
Found at i:20802110 original size:42 final size:42
Alignment explanation
Indices: 20802045--20802133 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
20802035 TCCTAATTGG
*
20802045 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
* *
20802087 GAAAATAGTTCCCTTCTTTTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
20802129 TAAAA
1 GAAAA
20802134 ATATTCATAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
Found at i:20802193 original size:23 final size:19
Alignment explanation
Indices: 20802150--20802197 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
20802140 ATAGAATATG
20802150 AATAAGATTTATCTATCTA
1 AATAAGATTTATCTATCTA
20802169 AATAAGATTTATCTATCTA
1 AATAAGATTTATCTATCTA
20802188 AATAA-ATTTA
1 AATAAGATTTA
20802198 AAATATATAC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 5 0.17
19 24 0.83
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (19 bp):
AATAAGATTTATCTATCTA
Found at i:20814391 original size:17 final size:19
Alignment explanation
Indices: 20814354--20814402 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
20814344 GGCTACGATG
20814354 GGCCCAAATGGACTATGTA
1 GGCCCAAATGGACTATGTA
*
20814373 GGCCC-AATGGGCT-TGTA
1 GGCCCAAATGGACTATGTA
*
20814390 GGCTCCACATGGA
1 GGC-CCAAATGGA
20814403 TAAATGTCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 7 0.28
18 9 0.36
19 9 0.36
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.20
Consensus pattern (19 bp):
GGCCCAAATGGACTATGTA
Found at i:20816243 original size:40 final size:40
Alignment explanation
Indices: 20816169--20816314 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
20816159 CCGCACCAAG
* * * * * *
20816169 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * *
20816209 GCCTTCGGGTATTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
20816249 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
20816289 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
20816315 TTTTCATCAT
Statistics
Matches: 88, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 88 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:20818158 original size:27 final size:27
Alignment explanation
Indices: 20818128--20818190 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 27
20818118 TTTAGCCTTT
* *
20818128 ATACTGATTACTGGCAGCTTTGCTGCG
1 ATACTAATTACAGGCAGCTTTGCTGCG
*
20818155 ATAC-CATTACAGGCAGCTTTGCTGCG
1 ATACTAATTACAGGCAGCTTTGCTGCG
20818181 ATACTAATTA
1 ATACTAATTA
20818191 GTACAGCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 24 0.75
27 8 0.25
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (27 bp):
ATACTAATTACAGGCAGCTTTGCTGCG
Found at i:20818163 original size:26 final size:26
Alignment explanation
Indices: 20818134--20818184 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20818124 CTTTATACTG
*
20818134 ATTACTGGCAGCTTTGCTGCGATACC
1 ATTACAGGCAGCTTTGCTGCGATACC
20818160 ATTACAGGCAGCTTTGCTGCGATAC
1 ATTACAGGCAGCTTTGCTGCGATAC
20818185 TAATTAGTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (26 bp):
ATTACAGGCAGCTTTGCTGCGATACC
Found at i:20822875 original size:24 final size:24
Alignment explanation
Indices: 20822807--20822875 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
20822797 TTGATAGTTT
*
20822807 TAAAATTGATAAGTTATACCATATTTG
1 TAAATTTGATAAGTTAT---ATATTTG
* *
20822834 TAATTTTGA-AATGGTATATATTTG
1 TAAATTTGATAA-GTTATATATTTG
20822858 TAAATTTGATAAGTTATA
1 TAAATTTGATAAGTTATA
20822876 CCATATTTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
24 20 0.57
25 2 0.06
26 2 0.06
27 11 0.31
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (24 bp):
TAAATTTGATAAGTTATATATTTG
Found at i:20822904 original size:51 final size:51
Alignment explanation
Indices: 20822807--20822909 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
20822797 TTGATAGTTT
* * **
20822807 TAAAATTGATAAGTTATACCATATTTGTAATTTTGAAATGGTATATATTTG
1 TAAAATTGATAAGTTATACCATATTTATAATTATGAAATGACATATATTTG
* *
20822858 TAAATTTGATAAGTTATACCATATTTATAATTATGAAATTACATATATTTG
1 TAAAATTGATAAGTTATACCATATTTATAATTATGAAATGACATATATTTG
20822909 T
1 T
20822910 TGAAGAAATT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.46
Consensus pattern (51 bp):
TAAAATTGATAAGTTATACCATATTTATAATTATGAAATGACATATATTTG
Found at i:20842354 original size:16 final size:16
Alignment explanation
Indices: 20842333--20842363 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20842323 GATAATAAGT
20842333 AAACATAACATATATG
1 AAACATAACATATATG
*
20842349 AAACATAGCATATAT
1 AAACATAACATATAT
20842364 TAAGAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (16 bp):
AAACATAACATATATG
Found at i:20847831 original size:53 final size:54
Alignment explanation
Indices: 20847761--20847968 Score: 235
Period size: 53 Copynumber: 3.9 Consensus size: 54
20847751 TTTCCTTTTT
*
20847761 GAACTTACCATTGCCATGTCTTGACATGGTCTTA-AGTGGTATCCTTGCCTTAT-
1 GAACTTACCAATGCCATGTCTTGACATGGTCTTACA-TGGTATCCTTGCCTTATA
* * * * *
20847814 GAACTCACCAATACCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* * * *
20847868 GTAACTTATCAATGCCATATCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
20847923 GAACTTATCAATGCCATG-CGTTGGCATGGTCTTACATGATATCCTT
1 GAACTTACCAATGCCATGTC-TTGACATGGTCTTACATGGTATCCTT
20847969 ATCTTACCAA
Statistics
Matches: 131, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 43 0.33
54 42 0.32
55 42 0.32
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:20847900 original size:108 final size:109
Alignment explanation
Indices: 20847762--20847960 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 109
20847752 TTCCTTTTTG
* * *
20847762 AACTTACCATTGCCATGTCTTGACATGGTCTTA-AGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 AACTTACCAATGCCATATCTTGACATGGTCTTACA-TGATATCCTTGCCTTATAGAACTCACCAA
20847825 TACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
20847870 AACTTATCAATGCCATATCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAAT
1 AACTTACCAATGCCATATCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCACCAAT
* *
20847935 GCCATGCGTTGGCATGGTCTTACATG
66 ACCATGCCTTGGCATGGTCTTACATG
20847961 ATATCCTTAT
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
108 45 0.56
109 35 0.44
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (109 bp):
AACTTACCAATGCCATATCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCACCAAT
ACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:20848005 original size:47 final size:47
Alignment explanation
Indices: 20847947--20848068 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
20847937 CATGCGTTGG
* * *
20847947 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAAGTTCCAAA
*
20847994 CATGGTTTTACATGGTATCCTTGTCTTACCAAATGCCAAGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAAGTTCCAAA
*
20848041 CATAGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
20848069 GTGTCAATAC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCAAGTTCCAAA
Found at i:20848874 original size:30 final size:31
Alignment explanation
Indices: 20848831--20848888 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
20848821 CTAACTCAAA
20848831 CTTTGGCAAAATTAAAATTTTACCCCTAAAC
1 CTTTGGCAAAATTAAAATTTTACCCCTAAAC
* * *
20848862 CTTT-GCAGAATTACAATTTTGCCCCTA
1 CTTTGGCAAAATTAAAATTTTACCCCTA
20848889 GGCTCGGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (31 bp):
CTTTGGCAAAATTAAAATTTTACCCCTAAAC
Found at i:20855668 original size:18 final size:19
Alignment explanation
Indices: 20855646--20855720 Score: 55
Period size: 19 Copynumber: 3.8 Consensus size: 19
20855636 TAAGCATAAG
*
20855646 AAAAATAAAACAAATA-ATT
1 AAAAATAAAA-AAATAGATA
*
20855665 AAAAATAAGAAAATAGATAA
1 AAAAATAAAAAAATAGAT-A
*
20855685 AAATAATATAACAAATA-ATA
1 AAA-AATA-AAAAAATAGATA
*
20855705 AATAAATAATAAAATA
1 AA-AAATAAAAAAATA
20855721 AAATAAAGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
18 5 0.11
19 17 0.38
20 10 0.22
21 7 0.16
22 6 0.13
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (19 bp):
AAAAATAAAAAAATAGATA
Found at i:20855703 original size:40 final size:41
Alignment explanation
Indices: 20855641--20855720 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 41
20855631 AAATTTAAGC
*
20855641 ATAAGAAAAATAAAACAAATAATTAA-AAATAAGAAAATAG
1 ATAAGAAAAATAAAACAAATAATAAATAAATAAGAAAATAG
* *
20855681 ATAA-AAATAATATAACAAATAATAAATAAATAATAAAATA
1 ATAAGAAA-AATAAAACAAATAATAAATAAATAAGAAAATA
20855721 AAATAAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
39 3 0.09
40 20 0.57
41 12 0.34
ACGTcount: A:0.72, C:0.03, G:0.04, T:0.21
Consensus pattern (41 bp):
ATAAGAAAAATAAAACAAATAATAAATAAATAAGAAAATAG
Found at i:20856023 original size:30 final size:30
Alignment explanation
Indices: 20855967--20856023 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
20855957 ACCCAATCTT
**
20855967 CACACGGCCATGTGTCCAAGTTGTGTGGCA
1 CACACGGCCATGTGTCCAAGCCGTGTGGCA
20855997 CACACGGCCATGTGTCCAAGCCGTGTG
1 CACACGGCCATGTGTCCAAGCCGTGTG
20856024 ATCTCCTTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (30 bp):
CACACGGCCATGTGTCCAAGCCGTGTGGCA
Found at i:20861128 original size:57 final size:58
Alignment explanation
Indices: 20861049--20861166 Score: 157
Period size: 57 Copynumber: 2.1 Consensus size: 58
20861039 ATTGAATTTC
* *
20861049 TGCCACTGATGCCACAAATGGTAATGTAGGCACAAAAAAATCA-CTTTCTGCCACCGA
1 TGCCACTGATGCCACAAATGGTAATGCAGGCACAAAAAAATCATCTTTCTGCCACCAA
* * * * * *
20861106 TGCCACTGGTGCCGCCATTGGTAATGCAGGCATAAAAAAATCATCTTTTTGCCACCAA
1 TGCCACTGATGCCACAAATGGTAATGCAGGCACAAAAAAATCATCTTTCTGCCACCAA
20861164 TGC
1 TGC
20861167 TGCTAATGGA
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 37 0.71
58 15 0.29
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (58 bp):
TGCCACTGATGCCACAAATGGTAATGCAGGCACAAAAAAATCATCTTTCTGCCACCAA
Found at i:20862516 original size:35 final size:35
Alignment explanation
Indices: 20862465--20862531 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
20862455 GTTTTTAGGG
* *
20862465 TTAGGGTTTTGCTAAAATAAGTTAGGGTTTAGTGT
1 TTAGGGTTTTGCTAAAACAAGTTAGGGGTTAGTGT
* *
20862500 TTAGGTTTTTGTTAAAACAAGTTAGGGGTTAG
1 TTAGGGTTTTGCTAAAACAAGTTAGGGGTTAG
20862532 AATTTTAGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.27, C:0.03, G:0.28, T:0.42
Consensus pattern (35 bp):
TTAGGGTTTTGCTAAAACAAGTTAGGGGTTAGTGT
Found at i:20862646 original size:35 final size:34
Alignment explanation
Indices: 20862589--20862718 Score: 144
Period size: 35 Copynumber: 3.9 Consensus size: 34
20862579 AAAAATTATT
* *
20862589 TAAATTAAGG-TTTATGGTTTTTAAATAAATTAAG
1 TAAATTAGGGTTTTA-GGGTTTTAAATAAATTAAG
*
20862623 TAAATTAGGGGTTTTAAGGTTTTAAATAAATTAAGG
1 TAAATTA-GGGTTTTAGGGTTTTAAATAAATTAA-G
*
20862659 T---TTA-GGATTTAGGGTTTTTAAATAAATTAAG
1 TAAATTAGGGTTTTAGGG-TTTTAAATAAATTAAG
*
20862690 TAAATTAGGGTTCTAGGGTTTTAAATAAA
1 TAAATTAGGGTTTTAGGGTTTTAAATAAA
20862719 CTAAATTAGG
Statistics
Matches: 81, Mismatches: 7, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
31 10 0.12
32 15 0.19
33 3 0.04
34 21 0.26
35 26 0.32
36 6 0.07
ACGTcount: A:0.38, C:0.01, G:0.19, T:0.42
Consensus pattern (34 bp):
TAAATTAGGGTTTTAGGGTTTTAAATAAATTAAG
Found at i:20862724 original size:30 final size:29
Alignment explanation
Indices: 20862588--20862824 Score: 139
Period size: 34 Copynumber: 7.7 Consensus size: 29
20862578 TAAAAATTAT
* *
20862588 TTAAATTAAGGTTTATGGTTTTTAAATAAA
1 TTAAATTAGGGTTTA-GGGTTTTAAATAAA
*
20862618 TTAAGTAAATTAGGGGTTTTAAGGTTTTAAATAAA
1 -T---TAAATTA-GGG-TTTAGGGTTTTAAATAAA
* *
20862653 TTAAGGTTTAGGATTTAGGGTTTTTAAATAAA
1 TTAA--ATTAGGGTTTAGGG-TTTTAAATAAA
20862685 TTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAA
1 -T---TAAATTAGGGTT-TAGGGTTTTAAATAAA
*
20862719 CT-AA--A----TTAGGGTTTTAAA-AAA
1 TTAAATTAGGGTTTAGGGTTTTAAATAAA
* *
20862740 TTAAATTAAGGTTTATGGTTTTTAAATAAA
1 TTAAATTAGGGTTTA-GGGTTTTAAATAAA
*
20862770 TTAAGTAATTTAGAGTTCTAGGGTTTTAAATAAA
1 TT-A--AA-TTAGGGTT-TAGGGTTTTAAATAAA
*
20862804 TTAAATTAGGGTTTAAGGTTT
1 TTAAATTAGGGTTTAGGGTTT
20862825 AAGGTTAAAT
Statistics
Matches: 163, Mismatches: 16, Indels: 56
0.69 0.07 0.24
Matches are distributed among these distances:
21 4 0.02
22 14 0.09
23 1 0.01
24 1 0.01
27 1 0.01
28 3 0.02
29 18 0.11
30 13 0.08
31 13 0.08
32 13 0.08
33 7 0.04
34 47 0.29
35 21 0.13
36 7 0.04
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.42
Consensus pattern (29 bp):
TTAAATTAGGGTTTAGGGTTTTAAATAAA
Found at i:20862746 original size:21 final size:22
Alignment explanation
Indices: 20862703--20862753 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 22
20862693 ATTAGGGTTC
20862703 TAGGGTTTTAAATAAACTAAAT
1 TAGGGTTTTAAATAAACTAAAT
*
20862725 TAGGGTTTTAAA-AAATTAAAT
1 TAGGGTTTTAAATAAACTAAAT
*
20862746 TAAGGTTT
1 TAGGGTTT
20862754 ATGGTTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.43, C:0.02, G:0.16, T:0.39
Consensus pattern (22 bp):
TAGGGTTTTAAATAAACTAAAT
Found at i:20862769 original size:85 final size:88
Alignment explanation
Indices: 20862640--20862817 Score: 281
Period size: 85 Copynumber: 2.1 Consensus size: 88
20862630 GGGGTTTTAA
* * *
20862640 GGTTTTAAATAAATTAAGGTTTAGGATTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
1 GGTTTTAAATAAATTAAGATTAAGGATTTAGGGTTTTTAAATAAATTAAGTAAATTAGAGTTCTA
20862705 GGGTTTTAAATAAACTAAATTAG
66 GGGTTTTAAATAAACTAAATTAG
* *
20862728 GGTTTTAAA-AAATTAA-ATTAAGG-TTTATGGTTTTTAAATAAATTAAGTAATTTAGAGTTCTA
1 GGTTTTAAATAAATTAAGATTAAGGATTTAGGGTTTTTAAATAAATTAAGTAAATTAGAGTTCTA
*
20862790 GGGTTTTAAATAAATTAAATTAG
66 GGGTTTTAAATAAACTAAATTAG
20862813 GGTTT
1 GGTTT
20862818 AAGGTTTAAG
Statistics
Matches: 84, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
85 63 0.75
86 5 0.06
87 7 0.08
88 9 0.11
ACGTcount: A:0.39, C:0.02, G:0.18, T:0.42
Consensus pattern (88 bp):
GGTTTTAAATAAATTAAGATTAAGGATTTAGGGTTTTTAAATAAATTAAGTAAATTAGAGTTCTA
GGGTTTTAAATAAACTAAATTAG
Found at i:20863191 original size:126 final size:126
Alignment explanation
Indices: 20862915--20863421 Score: 707
Period size: 126 Copynumber: 4.0 Consensus size: 126
20862905 ATTTTTATCT
* * *
20862915 TGAAAAAATAATTTTAAGAAGACTTTTCTGAACAAATAATGTCAAAAACGCTTCAAGCAGGATGC
1 TGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATGC
* * *
20862980 ACTGTCAACAAAAATACAGAAAAAATGCTCCCACGTGGAAGCTCTTTTTCTACAGTAGTT-A
66 ACTGTCAGCAAAATTACAGAAAAAA-GCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCA
* *
20863041 CTGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGATG
1 -TGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATG
* * * * * *
20863106 CACTATCAGTAAAATTACGGAAAAAAGCTACCACGTGGTCCCTCTTTTTCTACAGTAGTTCA
65 CACTGTCAGCAAAATTACAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCA
* *
20863168 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAATACTTCAAGCAGGATGC
1 TGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATGC
* * *
20863233 ACTGTCAGTAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCC
66 ACTGTCAGCAAAATTACAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCA
* * * *
20863294 T-AAAAAATAA-TTTAGAGAAGATGTTTCTGAACAAATAGTGCCAAAAAAACTTCAAGTAGGATG
1 TGAAAAAATAATTTTA-AGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATG
* * * *
20863357 CAATGTCAGCAAAATTTCTA-AAAAAAGTTCCCATGTGGACGCTCTTTTTCTACAGTAGTTCA
65 CACTGTCAGCAAAATTAC-AGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCA
20863419 TGA
1 TGA
20863422 TTAGCCTTAG
Statistics
Matches: 341, Mismatches: 35, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
124 3 0.01
125 107 0.31
126 148 0.43
127 83 0.24
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (126 bp):
TGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATGC
ACTGTCAGCAAAATTACAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCA
Found at i:20863419 original size:251 final size:253
Alignment explanation
Indices: 20862915--20863421 Score: 750
Period size: 251 Copynumber: 2.0 Consensus size: 253
20862905 ATTTTTATCT
* *
20862915 TGAAAAAATAATTTTAAGAAGACTTTTCTGAACAAATAATGTCAAAAACGCTTCAAGCAGGATGC
1 TGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAATGTCAAAAACACTTCAAGCAGGATGC
20862980 ACTGTCAACAAAAATACAGAAAAAATGCTCCCACGTGGAAGCTCTTTTTCTACAGTAGTTACTGA
66 ACTGTCAACAAAAATACAGAAAAAATGCTCCCACGTGGAAGCTCTTTTTCTACAGTAGTTACTGA
* ** *
20863045 AAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGATGCACT
131 AAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGCCAAAAAAACTTCAAGTAGGATGCAAT
* * *
20863110 ATCAGTAAAATTACGGAAAAAAGCTACCACGTGGTCCCTCTTTTTCTACAGTAGTTCA
196 ATCAGCAAAATTACGAAAAAAAGCTACCACGTGGACCCTCTTTTTCTACAGTAGTTCA
* * *
20863168 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAATACTTCAAGCAGGATGC
1 TGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAATGTCAAAAACACTTCAAGCAGGATGC
** * * * *
20863233 ACTGTCAGTAAAATTATAGAAAAAA-GCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCT-A
66 ACTGTCAACAAAAATACAGAAAAAATGCTCCCACGTGGAAGCTCTTTTTCTACAGTAGTTACTGA
*
20863296 AAAAATAA-TTTAGAGAAGATGTTTCTGAACAAATAGTGCCAAAAAAACTTCAAGTAGGATGCAA
131 AAAAATAATTTTA-AGAAGACGTTTCTGAACAAATAGTGCCAAAAAAACTTCAAGTAGGATGCAA
* * * * * * *
20863360 TGTCAGCAAAATTTCTAAAAAAAGTTCCCATGTGGACGCTCTTTTTCTACAGTAGTTCA
195 TATCAGCAAAATTACGAAAAAAAGCTACCACGTGGACCCTCTTTTTCTACAGTAGTTCA
20863419 TGA
1 TGA
20863422 TTAGCCTTAG
Statistics
Matches: 227, Mismatches: 26, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
250 4 0.02
251 107 0.47
252 35 0.15
253 81 0.36
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (253 bp):
TGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAATGTCAAAAACACTTCAAGCAGGATGC
ACTGTCAACAAAAATACAGAAAAAATGCTCCCACGTGGAAGCTCTTTTTCTACAGTAGTTACTGA
AAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGCCAAAAAAACTTCAAGTAGGATGCAAT
ATCAGCAAAATTACGAAAAAAAGCTACCACGTGGACCCTCTTTTTCTACAGTAGTTCA
Found at i:20866464 original size:25 final size:28
Alignment explanation
Indices: 20866428--20866509 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 28
20866418 TATTCTGCCT
20866428 TATTAAAAAAAACTTATATTTTATTAAAA
1 TATT-AAAAAAACTTATATTTTATTAAAA
*
20866457 -A-T-ATAAAA-TTA-ATTTACTATTAAAA
1 TATTAAAAAAACTTATATTT--TATTAAAA
*
20866482 TATTAAAAACAACTTATTTTTTATTAAA
1 TATTAAAAA-AACTTATATTTTATTAAA
20866510 TAAAATAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 16
0.69 0.05 0.26
Matches are distributed among these distances:
23 4 0.10
24 3 0.07
25 13 0.31
26 1 0.02
27 2 0.05
28 4 0.10
29 9 0.21
30 3 0.07
31 3 0.07
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (28 bp):
TATTAAAAAAACTTATATTTTATTAAAA
Found at i:20866981 original size:30 final size:30
Alignment explanation
Indices: 20866945--20867003 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
20866935 TGAAGGGGTT
20866945 GTGATTGTGTGGGCGCTGTTGATGGGCCCG
1 GTGATTGTGTGGGCGCTGTTGATGGGCCCG
* *
20866975 GTGATTGTGTGGGTGTTGTTGATGGGCCC
1 GTGATTGTGTGGGCGCTGTTGATGGGCCC
20867004 ATGCCGTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.07, C:0.14, G:0.46, T:0.34
Consensus pattern (30 bp):
GTGATTGTGTGGGCGCTGTTGATGGGCCCG
Found at i:20868608 original size:21 final size:21
Alignment explanation
Indices: 20868575--20868618 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
20868565 TATAAAGAGT
*
20868575 TTTGAGAAATTTAATGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
** *
20868596 TTTGAGAGTTTTAGGGAGAAA
1 TTTGAGAAATTTAAGGAGAAA
20868617 TT
1 TT
20868619 ATAAAGATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (21 bp):
TTTGAGAAATTTAAGGAGAAA
Found at i:20873750 original size:6 final size:6
Alignment explanation
Indices: 20873739--20873773 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
20873729 CAAGGTTCTT
20873739 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
20873774 TCATCTTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:20886690 original size:40 final size:40
Alignment explanation
Indices: 20886625--20886761 Score: 166
Period size: 40 Copynumber: 3.4 Consensus size: 40
20886615 TCAAGAATAT
* * ** *
20886625 AAAGTGGATAGGATTCGTTCCTGATTCACTATAATACCTC
1 AAAGTGGATAGGATTTGTTCTTGATTCACTATGGTAACTC
* *
20886665 AAAGTGGATAGGATTTGTTCTTGATTCACTATGGTAATTT
1 AAAGTGGATAGGATTTGTTCTTGATTCACTATGGTAACTC
* * *
20886705 AAAGTGAATAGGATTTATTCTTGATTCATTATGGTAACTC
1 AAAGTGGATAGGATTTGTTCTTGATTCACTATGGTAACTC
* *
20886745 AAGGCGGATAGGATTTG
1 AAAGTGGATAGGATTTG
20886762 ACCTAAAAAG
Statistics
Matches: 81, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (40 bp):
AAAGTGGATAGGATTTGTTCTTGATTCACTATGGTAACTC
Found at i:20886820 original size:78 final size:78
Alignment explanation
Indices: 20886726--20886956 Score: 304
Period size: 79 Copynumber: 2.9 Consensus size: 78
20886716 GATTTATTCT
* *
20886726 TGATTCATTATGGTAACTCAAGGCGGATAGGATTTGACCTAAAAAGGTAATCCTGATTTGCTACA
1 TGATTCATTATGGTAACTCAAGGTGGATAGGATTTGACCTAAAAAGGTAATCCTGATTCGCTACA
*
20886791 ATTATATGATATA
66 ATTACATGATATA
*
20886804 TGATTCATTATGGTAAC-CAAAGGTGGATAGGATTTGACCTTAAAAGGGTAATCCTGATTCGCTA
1 TGATTCATTATGGTAACTC-AAGGTGGATAGGATTTGACC-TAAAAAGGTAATCCTGATTCGCTA
**
20886868 CGGTTACATGATATA
64 CAATTACATGATATA
* * * * * *
20886883 TGATTCCTTATGATAACAT-AAGGTGGGTAGGATTTGACCTGAAAAGGTAATCTTGATTCACTAC
1 TGATTCATTATGGTAAC-TCAAGGTGGATAGGATTTGACCTAAAAAGGTAATCCTGATTCGCTAC
*
20886947 AGTTACATGA
65 AATTACATGA
20886957 GATGTGACTC
Statistics
Matches: 135, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
77 1 0.01
78 66 0.49
79 68 0.50
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.32
Consensus pattern (78 bp):
TGATTCATTATGGTAACTCAAGGTGGATAGGATTTGACCTAAAAAGGTAATCCTGATTCGCTACA
ATTACATGATATA
Found at i:20886894 original size:79 final size:78
Alignment explanation
Indices: 20886726--20886956 Score: 313
Period size: 78 Copynumber: 2.9 Consensus size: 78
20886716 GATTTATTCT
* * *
20886726 TGATTCATTATGGTAACTC-AAGGCGGATAGGATTTGACCTAAAAAGGTAATCCTGATTTGCTAC
1 TGATTCATTATGGTAAC-CAAAGGTGGATAGGATTTGACCTTAAAAGGTAATCCTGATTCGCTAC
* *
20886790 AATTATATGATATA
65 AGTTACATGATATA
20886804 TGATTCATTATGGTAACCAAAGGTGGATAGGATTTGACCTTAAAAGGGTAATCCTGATTCGCTAC
1 TGATTCATTATGGTAACCAAAGGTGGATAGGATTTGACCTTAAAA-GGTAATCCTGATTCGCTAC
*
20886869 GGTTACATGATATA
65 AGTTACATGATATA
* * * * * *
20886883 TGATTCCTTATGATAA-CATAAGGTGGGTAGGATTTGACCTGAAAAGGTAATCTTGATTCACTAC
1 TGATTCATTATGGTAACCA-AAGGTGGATAGGATTTGACCTTAAAAGGTAATCCTGATTCGCTAC
20886947 AGTTACATGA
65 AGTTACATGA
20886957 GATGTGACTC
Statistics
Matches: 137, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
77 1 0.01
78 69 0.50
79 67 0.49
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.32
Consensus pattern (78 bp):
TGATTCATTATGGTAACCAAAGGTGGATAGGATTTGACCTTAAAAGGTAATCCTGATTCGCTACA
GTTACATGATATA
Found at i:20889191 original size:15 final size:15
Alignment explanation
Indices: 20889171--20889200 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
20889161 AAGATATTTT
20889171 AACAAATAAAATTAA
1 AACAAATAAAATTAA
*
20889186 AACAAATGAAATTAA
1 AACAAATAAAATTAA
20889201 CAAAAAATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (15 bp):
AACAAATAAAATTAA
Found at i:20895563 original size:18 final size:18
Alignment explanation
Indices: 20895540--20895574 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
20895530 TTGTCACTTA
20895540 TCTTTTTTTGTAAATATG
1 TCTTTTTTTGTAAATATG
*
20895558 TCTTTTTTTTTAAATAT
1 TCTTTTTTTGTAAATAT
20895575 TTTATAATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.66
Consensus pattern (18 bp):
TCTTTTTTTGTAAATATG
Found at i:20898937 original size:12 final size:12
Alignment explanation
Indices: 20898920--20898967 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
20898910 TGTCATTAAC
20898920 ATATAAAACCAA
1 ATATAAAACCAA
*
20898932 ATATAAAACTTTAA
1 ATATAAAAC--CAA
20898946 CATATAAAACCAA
1 -ATATAAAACCAA
20898959 ATATAAAAC
1 ATATAAAAC
20898968 TTTACTCCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 18 0.58
13 2 0.06
14 2 0.06
15 9 0.29
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (12 bp):
ATATAAAACCAA
Found at i:20898953 original size:27 final size:27
Alignment explanation
Indices: 20898915--20898971 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
20898905 CAGTATGTCA
20898915 TTAACATATAAAACCAAATATAAAACT
1 TTAACATATAAAACCAAATATAAAACT
20898942 TTAACATATAAAACCAAATATAAAACT
1 TTAACATATAAAACCAAATATAAAACT
20898969 TTA
1 TTA
20898972 CTCCCACTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (27 bp):
TTAACATATAAAACCAAATATAAAACT
Found at i:20902070 original size:28 final size:28
Alignment explanation
Indices: 20902038--20902098 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
20902028 ATATATGAAT
* *
20902038 TAAATTCAATTGTGAATATAATTTATTA
1 TAAATTCAATTGTGAATATAATTCATCA
20902066 TAAATTCAATTGTGAATATAATTCATCA
1 TAAATTCAATTGTGAATATAATTCATCA
20902094 TAAAT
1 TAAAT
20902099 AAAGATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.43
Consensus pattern (28 bp):
TAAATTCAATTGTGAATATAATTCATCA
Found at i:20914260 original size:17 final size:17
Alignment explanation
Indices: 20914240--20914297 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
20914230 ATTAATTAAT
20914240 TTAACTAATTTAATTTC
1 TTAACTAATTTAATTTC
* *
20914257 TTAATTAATTTATTTTC
1 TTAACTAATTTAATTTC
* *
20914274 TCAACCCAATTCTAATTTC
1 TTAA-CTAATT-TAATTTC
20914293 GTTAA
1 -TTAA
20914298 AATCATAACA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
17 18 0.58
18 4 0.13
19 6 0.19
20 3 0.10
ACGTcount: A:0.33, C:0.16, G:0.02, T:0.50
Consensus pattern (17 bp):
TTAACTAATTTAATTTC
Found at i:20916909 original size:36 final size:36
Alignment explanation
Indices: 20916869--20916938 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
20916859 ACAAGTTTAC
20916869 ATATAAGTT-TATCAAGATTTAATTAAATGTGTTTCA
1 ATATAA-TTATATCAAGATTTAATTAAATGTGTTTCA
** * *
20916905 ATATAATTATATTTATATTTAATTATATGTGTTT
1 ATATAATTATATCAAGATTTAATTAAATGTGTTT
20916939 AAGGATCAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 2 0.07
36 27 0.93
ACGTcount: A:0.37, C:0.03, G:0.09, T:0.51
Consensus pattern (36 bp):
ATATAATTATATCAAGATTTAATTAAATGTGTTTCA
Found at i:20919306 original size:14 final size:14
Alignment explanation
Indices: 20919290--20919336 Score: 64
Period size: 14 Copynumber: 3.6 Consensus size: 14
20919280 ACATTTTCTC
*
20919290 TTCTTCTTCTCCTC
1 TTCTTCTTCTCCTA
20919304 TTCTTCTT-T--TA
1 TTCTTCTTCTCCTA
20919315 TTCTTCTTCTCCTA
1 TTCTTCTTCTCCTA
20919329 TTCTTCTT
1 TTCTTCTT
20919337 TTTACCTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
11 9 0.31
12 1 0.03
13 1 0.03
14 18 0.62
ACGTcount: A:0.04, C:0.32, G:0.00, T:0.64
Consensus pattern (14 bp):
TTCTTCTTCTCCTA
Found at i:20919324 original size:25 final size:25
Alignment explanation
Indices: 20919290--20919338 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
20919280 ACATTTTCTC
*
20919290 TTCTTCTTCTCCTCTTCTTCTTTTA
1 TTCTTCTTCTCCTATTCTTCTTTTA
20919315 TTCTTCTTCTCCTATTCTTCTTTT
1 TTCTTCTTCTCCTATTCTTCTTTT
20919339 TACCTAAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.04, C:0.31, G:0.00, T:0.65
Consensus pattern (25 bp):
TTCTTCTTCTCCTATTCTTCTTTTA
Found at i:20922798 original size:12 final size:11
Alignment explanation
Indices: 20922700--20922805 Score: 74
Period size: 11 Copynumber: 9.5 Consensus size: 11
20922690 TTTTTACTTT
20922700 TTTTATTATT-
1 TTTTATTATTA
*
20922710 TTTCTATCATT-
1 TTT-TATTATTA
20922721 TTTCTATTATATA
1 TTT-TATTAT-TA
* *
20922734 TTACTACTATT-
1 TT-TTATTATTA
20922745 TTTTATTATTA
1 TTTTATTATTA
*
20922756 TTTTAATATTA
1 TTTTATTATTA
* * *
20922767 TATAATTCTTA
1 TTTTATTATTA
20922778 TTTTATTATTGA
1 TTTTATTATT-A
*
20922790 TTTTGTTATTA
1 TTTTATTATTA
20922801 TTTTA
1 TTTTA
20922806 GATATATTTA
Statistics
Matches: 74, Mismatches: 16, Indels: 11
0.73 0.16 0.11
Matches are distributed among these distances:
10 9 0.12
11 46 0.62
12 12 0.16
13 7 0.09
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:20923825 original size:27 final size:28
Alignment explanation
Indices: 20923760--20923841 Score: 76
Period size: 31 Copynumber: 2.8 Consensus size: 28
20923750 CAAACCTTAA
20923760 AATTATACATGAACTTTGATTTAATATGT
1 AATTATACATGAACTTTGATTTAATA-GT
* **
20923789 AATTTGATACATGAACTTTTATTTGGTA-T
1 AA-TT-ATACATGAACTTTGATTTAATAGT
20923818 AATTATACACATGAAACTTTGATT
1 AATTAT--ACATG-AACTTTGATT
20923842 GTGGTTCAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
27 2 0.05
28 2 0.05
29 10 0.23
30 11 0.25
31 19 0.43
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.44
Consensus pattern (28 bp):
AATTATACATGAACTTTGATTTAATAGT
Found at i:20924840 original size:18 final size:18
Alignment explanation
Indices: 20924796--20924840 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
20924786 ATTAGATAAT
*
20924796 TTAATTTTTCCAATTTAA
1 TTAATTTTTCCAACTTAA
* *
20924814 ATAATTTTTTCAACTTAA
1 TTAATTTTTCCAACTTAA
20924832 TTCAATTTT
1 TT-AATTTT
20924841 GTTAAAGTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAATTTTTCCAACTTAA
Found at i:20927915 original size:22 final size:22
Alignment explanation
Indices: 20927889--20927931 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
20927879 TTAAATGCTT
*
20927889 AACATTTTCTTAAAATATTTTA
1 AACATTTCCTTAAAATATTTTA
20927911 AACATTTCCTTAAAATATTTT
1 AACATTTCCTTAAAATATTTT
20927932 GTCTAATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.49
Consensus pattern (22 bp):
AACATTTCCTTAAAATATTTTA
Done.