Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 702 of 770
Found at i:221558457 original size:38 final size:39
Alignment explanation
Indices: 221558364--221558476 Score: 158
Period size: 40 Copynumber: 2.9 Consensus size: 39
221558354 ATGCTGAAAT
* *
221558364 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAGC
*
221558404 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG-
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAGC
221558443 T-TATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAA
221558477 ATCGTGATAT
Statistics
Matches: 68, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
38 30 0.44
39 6 0.09
40 32 0.47
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAGC
Found at i:221566525 original size:47 final size:47
Alignment explanation
Indices: 221566461--221566571 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
221566451 GACATTGAGT
*
221566461 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
221566508 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
221566555 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
221566572 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:221573778 original size:47 final size:47
Alignment explanation
Indices: 221573714--221573824 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
221573704 GACATTGAGT
*
221573714 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
221573761 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
221573808 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
221573825 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:221582168 original size:70 final size:70
Alignment explanation
Indices: 221582081--221582449 Score: 634
Period size: 70 Copynumber: 5.2 Consensus size: 70
221582071 CAAGTGACAG
*
221582081 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
221582146 GTTTC
66 GTTTC
221582151 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
221582216 GTTTC
66 GTTTC
*
221582221 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
221582286 GTTTC
66 GTTTC
221582291 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA-A-ACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
221582354 AATTTATGTTTC
59 AATTTATGTTTC
*
221582366 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
221582431 GTTTC
66 GTTTC
221582436 AAAATCAACTCATA
1 AAAATCAACTCATA
221582450 GGTGAGTTGA
Statistics
Matches: 286, Mismatches: 4, Indels: 18
0.93 0.01 0.06
Matches are distributed among these distances:
68 9 0.03
69 1 0.00
70 206 0.72
71 2 0.01
72 1 0.00
73 1 0.00
74 2 0.01
75 54 0.19
76 1 0.00
77 9 0.03
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTC
Found at i:221582511 original size:145 final size:138
Alignment explanation
Indices: 221582081--221582546 Score: 570
Period size: 145 Copynumber: 3.3 Consensus size: 138
221582071 CAAGTGACAG
221582081 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
221582146 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCA-ATT----GAGGTGAGTTGAGCCTC--GACACGTTGAGGTAATTTCAA
221582211 TTT--A--TG-TTTC
124 TTTCAATTTGTTTTC
* *
221582221 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
* *
221582286 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACGTTGAGGTAATTTCAATT
66 GTTTCAAAATCAACTCA-ATT----GAGGTGAGTTGAGCCTCGACACGTTGAGGTAATTTCAA-T
*
221582351 TTCAATTTATGTTTC
125 TTCAATTTGT-TTTC
* *
221582366 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
* * *
221582431 GTTTCAAAATCAACTC-A-T-AGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTCAGTTCTAC
66 GTTTCAAAATCAACTCAATTGAGGTGAGTTGAGCCTC-GACACGTTGAGGTAATTTCA-----A-
221582493 TTTCAATTCCTGTTTTTC
124 TTTCAATT--TG-TTTTC
221582511 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCT
1 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCT
221582547 GTTAATTTCT
Statistics
Matches: 294, Mismatches: 16, Indels: 27
0.87 0.05 0.08
Matches are distributed among these distances:
137 16 0.05
138 34 0.12
139 3 0.01
140 105 0.36
141 1 0.00
142 1 0.00
143 11 0.04
145 122 0.41
146 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (138 bp):
AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTCAAAATCAACTCAATTGAGGTGAGTTGAGCCTCGACACGTTGAGGTAATTTCAATTTCAAT
TTGTTTTC
Found at i:221582582 original size:54 final size:52
Alignment explanation
Indices: 221582497--221582650 Score: 185
Period size: 48 Copynumber: 3.0 Consensus size: 52
221582487 TTCTACTTTC
* *
221582497 AATTCCTGTTTTTC-AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTGTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT
* *
221582550 AATTTCTGTCTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CC-T
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTT
**
221582601 --TTT-TGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
221582650 A
1 A
221582651 GGTCATATGT
Statistics
Matches: 88, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
47 1 0.01
48 38 0.43
49 4 0.05
51 1 0.01
53 12 0.14
54 31 0.35
55 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (52 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
Found at i:221583438 original size:35 final size:34
Alignment explanation
Indices: 221583356--221583460 Score: 183
Period size: 34 Copynumber: 3.1 Consensus size: 34
221583346 ACTTGCCTCT
221583356 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
*
221583390 TTCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
*
221583424 CTCCCACTCTCCCATGCTGTCTGCCGCCAGCACCA
1 -TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
221583459 TC
1 TC
221583461 ACACACCCCA
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
34 35 0.52
35 32 0.48
ACGTcount: A:0.16, C:0.50, G:0.12, T:0.22
Consensus pattern (34 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:221583905 original size:32 final size:31
Alignment explanation
Indices: 221583858--221583929 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 31
221583848 AGAGGGGAAG
221583858 CAAAAAAAAAATCCAGCAAAAAA-TTCCAGCA
1 CAAAAAAAAAATCCAG-AAAAAATTTCCAGCA
**
221583889 CCAAAAAAAATTTCCAGAAAAAATTTCCAGCA
1 -CAAAAAAAAAATCCAGAAAAAATTTCCAGCA
221583921 -AAAAAAAAA
1 CAAAAAAAAA
221583930 CCAAAAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 8 0.22
31 6 0.17
32 22 0.61
ACGTcount: A:0.62, C:0.19, G:0.06, T:0.12
Consensus pattern (31 bp):
CAAAAAAAAAATCCAGAAAAAATTTCCAGCA
Found at i:221583911 original size:13 final size:14
Alignment explanation
Indices: 221583893--221583925 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
221583883 CCAGCACCAA
221583893 AAAAAATTTCCAG-
1 AAAAAATTTCCAGC
221583906 AAAAAATTTCCAGC
1 AAAAAATTTCCAGC
221583920 AAAAAA
1 AAAAAA
221583926 AAAACCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.61, C:0.15, G:0.06, T:0.18
Consensus pattern (14 bp):
AAAAAATTTCCAGC
Found at i:221584214 original size:11 final size:11
Alignment explanation
Indices: 221584189--221584237 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
221584179 CGACCGGATT
*
221584189 TCCCTTC-CCC
1 TCCCTTCTCTC
221584199 TCCCTTCTCTC
1 TCCCTTCTCTC
221584210 TCCCTTCTCTC
1 TCCCTTCTCTC
221584221 TTCCC-TCTCTC
1 -TCCCTTCTCTC
*
221584232 TTCCTT
1 TCCCTT
221584238 TTTTTTCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
10 10 0.29
11 20 0.59
12 4 0.12
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:221587324 original size:92 final size:93
Alignment explanation
Indices: 221587213--221587383 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
221587203 CGCCCATAAG
* *
221587213 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
221587278 ACGAG-TCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
221587305 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
221587370 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
221587384 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 67 0.89
93 8 0.11
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:221587380 original size:46 final size:46
Alignment explanation
Indices: 221587206--221587380 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
221587196 TGTAACCCGC
* * *
221587206 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
221587252 CCATAAGTGAACTCGGACTCAACTCAACGAG-TCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
221587301 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
221587344 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
221587381 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 6 0.05
46 82 0.75
47 7 0.06
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:221594870 original size:46 final size:45
Alignment explanation
Indices: 221594777--221594862 Score: 129
Period size: 46 Copynumber: 1.9 Consensus size: 45
221594767 TACATTTCAC
* *
221594777 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
221594823 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
221594863 CCTAGTGACA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 9 0.24
46 28 0.76
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:221598045 original size:26 final size:26
Alignment explanation
Indices: 221598015--221598118 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
221598005 ATGCCCATTC
*
221598015 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
221598041 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* * *
221598067 AGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
221598093 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
221598119 ATTTGTACCA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:221598088 original size:52 final size:52
Alignment explanation
Indices: 221598016--221598119 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
221598006 TGCCCATTCT
221598016 GGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCAA
1 GGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCAA
* *
221598068 GGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCAA
1 GGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCAA
221598120 TTTGTACCAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.31
Consensus pattern (52 bp):
GGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCAA
Found at i:221602370 original size:40 final size:39
Alignment explanation
Indices: 221602326--221602454 Score: 111
Period size: 40 Copynumber: 3.3 Consensus size: 39
221602316 GACTCGCTCA
*
221602326 AATGCCTTCGGGAC-GAAGCCC-GGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTGAA-CCCGGGTT-TAGCAACTTGCAC
* *
221602365 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
* * * * ** *
221602405 AAAGCCTTCGGGA-TTAGCCCGGATTTATTAACTCGCAC
1 AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
221602443 GAATGCCTTCGG
1 -AATGCCTTCGG
221602455 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
38 21 0.27
39 22 0.29
40 28 0.36
41 6 0.08
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTGAACCCGGGTTTAGCAACTTGCAC
Found at i:221602454 original size:78 final size:80
Alignment explanation
Indices: 221602361--221602507 Score: 210
Period size: 78 Copynumber: 1.9 Consensus size: 80
221602351 ATAGCGACTT
* * *
221602361 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGC
221602423 CCGGATTTATTAACTC
65 CCGGATTTATTAACTC
** *
221602439 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
221602504 CGGA
66 CGGA
221602508 CATCATTCGA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
77 3 0.05
78 30 0.50
79 17 0.28
80 10 0.17
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
CGGATTTATTAACTC
Found at i:221602491 original size:40 final size:37
Alignment explanation
Indices: 221602342--221602507 Score: 125
Period size: 40 Copynumber: 4.2 Consensus size: 37
221602332 TTCGGGACGA
* ** *
221602342 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
221602382 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
221602420 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
221602460 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTC-GGA-TT
221602500 AGCCCGGA
1 AGCCCGGA
221602508 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
38 25 0.25
39 20 0.20
40 49 0.48
41 7 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:221610520 original size:39 final size:40
Alignment explanation
Indices: 221610386--221610523 Score: 131
Period size: 40 Copynumber: 3.5 Consensus size: 40
221610376 GGATATAACG
* * * **
221610386 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGG-TTATAGCG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
* *
221610426 ACTTGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * * *
221610466 ACTTGCAC-AAAGCCTTCGGGA-TTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
221610504 ACTCGCACGAATGCCTTCGG
1 ACTCGCACGAATGCCTTCGG
221610524 ATCCTAGTCC
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
38 21 0.25
39 22 0.27
40 36 0.43
41 4 0.05
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:221610523 original size:78 final size:79
Alignment explanation
Indices: 221610430--221610575 Score: 199
Period size: 78 Copynumber: 1.9 Consensus size: 79
221610420 ATAGCGACTT
* * *
221610430 GCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAAGCCTTCGGGA-TTAGC
1 GCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTC-GGACTTAGC
221610492 CCGGATTTATTAACTC
64 CCGGATTTATTAACTC
** *
221610508 GCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGACTTAGCCC
1 GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGACTTAGCCC
221610573 GGA
66 GGA
221610576 CATCATTCGA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
77 3 0.05
78 33 0.56
79 23 0.39
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
GCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGACTTAGCCC
GGATTTATTAACTC
Found at i:221610560 original size:40 final size:37
Alignment explanation
Indices: 221610411--221610575 Score: 132
Period size: 40 Copynumber: 4.2 Consensus size: 37
221610401 TTCGGGACGA
* ** *
221610411 AGCCCGGTTATAGCGACTTGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTC-GGA-TT
* * *
221610451 AACCCGGGTTTAGTAACTTGCACAAAGCCTTCGGGATT
1 AGCCCGGATATAGTAACTTGCACAAAGCCTTC-GGATT
* * * *
221610489 AGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCT
1 AGCCCGGATATAGTAACTTGCAC-AAAGCCTTCGGAT--T
* *
221610529 AGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGACTT
1 AGCCCGGATATAGTAACTT-GCACAAAGCCTTCGGA-TT
221610568 AGCCCGGA
1 AGCCCGGA
221610576 CATCATTCGA
Statistics
Matches: 102, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
38 25 0.25
39 28 0.27
40 44 0.43
41 5 0.05
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (37 bp):
AGCCCGGATATAGTAACTTGCACAAAGCCTTCGGATT
Found at i:221616315 original size:46 final size:46
Alignment explanation
Indices: 221616248--221616376 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
221616238 TGTAACCCGC
* * * *
221616248 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
221616294 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
221616340 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
221616377 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:221616395 original size:46 final size:45
Alignment explanation
Indices: 221616256--221616395 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
221616246 GCCCATAAGC
* ** * *
221616256 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
221616302 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
221616348 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
221616394 GA
1 GA
221616396 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:221623899 original size:93 final size:93
Alignment explanation
Indices: 221623787--221623958 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
221623777 CGCCCATAAG
* *
221623787 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
221623852 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
221623880 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
221623945 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
221623959 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:221623955 original size:46 final size:46
Alignment explanation
Indices: 221623780--221623955 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
221623770 TGTAACCCGC
* * *
221623780 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
221623826 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
221623876 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
221623919 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
221623956 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:221634200 original size:29 final size:29
Alignment explanation
Indices: 221634167--221634298 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
221634157 GTGACGAGAT
221634167 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
221634196 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
221634225 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
221634254 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
221634283 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
221634299 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:221642957 original size:13 final size:13
Alignment explanation
Indices: 221642939--221642963 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
221642929 ATAAGAGTAT
221642939 GAAAAAAAAAAAA
1 GAAAAAAAAAAAA
221642952 GAAAAAAAAAAA
1 GAAAAAAAAAAA
221642964 TGTTCATTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
GAAAAAAAAAAAA
Found at i:221644408 original size:40 final size:40
Alignment explanation
Indices: 221644245--221644410 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
221644235 AAATTGAATG
* * * **
221644245 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGATT
* * * **
221644284 ATATCCGGGTTAAGACCCGAAGGCA-ATGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * *
221644323 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
221644363 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGATT
221644403 ATATCCGG
1 ATATCCGG
221644411 TTATATTCCG
Statistics
Matches: 101, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
39 43 0.43
40 58 0.57
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:221651318 original size:40 final size:40
Alignment explanation
Indices: 221651257--221651418 Score: 186
Period size: 40 Copynumber: 4.0 Consensus size: 40
221651247 GGATTTAACT
* * *
221651257 GGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCACACGAATGCCTTCGGGACTTAGCCC
*
221651297 GGATATAGTAACTCATACGAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCACACGAATGCCTTCGGGACTTAGCCC
**
221651337 GGATATAGTAACTCACAAAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCACACGAATGCCTTCGGGACTTAGCCC
* * * *
221651377 -GAAACTAGTCACT-AGCGCAAATGCCTTCGGGACTTAGCCC
1 GGATA-TAGTAACTCA-CACGAATGCCTTCGGGACTTAGCCC
221651417 GG
1 GG
221651419 TTATCATCCA
Statistics
Matches: 107, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
39 5 0.05
40 101 0.94
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.22
Consensus pattern (40 bp):
GGATATAGTAACTCACACGAATGCCTTCGGGACTTAGCCC
Found at i:221658458 original size:29 final size:29
Alignment explanation
Indices: 221658422--221658584 Score: 202
Period size: 29 Copynumber: 5.6 Consensus size: 29
221658412 AATAAACGAT
***
221658422 CTCGCACACTTAGTGCCATGCGATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
221658451 CTCGCACACATAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* *
221658480 TTTGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
*
221658509 TTCGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATATAATTTAAG
* ** *
221658538 TTCGCACACTTAGTGCCATA-CCTTCCAAG
1 CTCGCACACTTAGTGCCATATAATT-TAAG
*
221658567 CCCGCACACTTAGTGCCA
1 CTCGCACACTTAGTGCCA
221658585 ATCTTGTCAC
Statistics
Matches: 120, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
28 2 0.02
29 118 0.98
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CTCGCACACTTAGTGCCATATAATTTAAG
Found at i:221668434 original size:40 final size:40
Alignment explanation
Indices: 221668367--221668533 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
221668357 AGAAATTGAA
* * *
221668367 TATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
* * ***
221668406 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
*
221668446 TATATCCGGGCT-AGACCCGAAGGC-ATTCGTGC-GAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAAT
* * ** *
221668485 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
221668525 TATATCCGG
1 TATATCCGG
221668534 TTATATTCCG
Statistics
Matches: 104, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
38 3 0.03
39 43 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAAT
Found at i:221668465 original size:79 final size:79
Alignment explanation
Indices: 221668367--221668517 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 79
221668357 AGAAATTGAA
*
221668367 TATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGTTAAGACCCGAAGG
1 TATATCCGGGCTAAGCCCGAAGAC-ATTCATGC-GAGAAATTATATCCGGGCTAAGACCCGAAGG
221668430 CAATTGTGCTAGTGGC
64 CAATTGTGCTAGTGGC
* * ** *
221668446 TATATCCGGGCT-AGACCCGAAGGCATTCGTGCGAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 TATATCCGGGCTAAG-CCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGC
*
221668510 ATTTGTGC
65 AATTGTGC
221668518 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
78 6 0.10
79 56 0.90
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TATATCCGGGCTAAGCCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGC
Found at i:221677530 original size:31 final size:30
Alignment explanation
Indices: 221677454--221677533 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 30
221677444 TTTTTTTTAA
* * *
221677454 TTAATAATAATAAAATTATATTTTAACCTT
1 TTAAAAATGATAAAATTATAATTTAACCTT
* *
221677484 TTAAGAATGATAAAATTTTAATTTAATCC-T
1 TTAAAAATGATAAAATTATAATTTAA-CCTT
* *
221677514 TTAAAAATTATAAAAATATA
1 TTAAAAATGATAAAATTATA
221677534 GACTTTTAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
30 39 0.95
31 2 0.05
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (30 bp):
TTAAAAATGATAAAATTATAATTTAACCTT
Found at i:221677655 original size:31 final size:30
Alignment explanation
Indices: 221677620--221677682 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
221677610 GTTTCATTTC
221677620 TTTAATAT-AAAAATAATA-ATAATATTACATT
1 TTTAATATCAAAAA-AATATATAAT-TTA-ATT
*
221677651 TTTAATATCATAAAAATATATAATTTAATT
1 TTTAATATCAAAAAAATATATAATTTAATT
221677681 TT
1 TT
221677683 AATCCTCGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 5 0.17
31 15 0.52
32 9 0.31
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (30 bp):
TTTAATATCAAAAAAATATATAATTTAATT
Found at i:221682993 original size:40 final size:40
Alignment explanation
Indices: 221682938--221683147 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
221682928 AACATTGGAA
221682938 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
221682978 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
221683018 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
221683058 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
221683097 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
221683138 CTATATCCGG
1 ATATATCCGG
221683148 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:221693451 original size:46 final size:46
Alignment explanation
Indices: 221693401--221693576 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
221693391 ATGGTTGGCA
221693401 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
221693447 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
221693494 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
221693540 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
221693577 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:221693556 original size:93 final size:93
Alignment explanation
Indices: 221693397--221693568 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
221693387 TAGGATGGTT
* *
221693397 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
221693462 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
221693490 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
221693555 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
221693569 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:221696545 original size:15 final size:15
Alignment explanation
Indices: 221696525--221696593 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
221696515 GTATCTTGGG
221696525 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
221696540 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
221696555 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
221696570 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
221696585 TTTCTTTAT
1 TTTCTTTAT
221696594 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:221696594 original size:30 final size:30
Alignment explanation
Indices: 221696516--221696603 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
221696506 CATAGTATCG
* * * *
221696516 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
221696546 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
221696576 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
221696604 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:221699015 original size:46 final size:46
Alignment explanation
Indices: 221698965--221699140 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
221698955 AGGATGGGCA
221698965 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
221699011 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
221699058 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
221699104 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
221699141 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:221699116 original size:93 final size:93
Alignment explanation
Indices: 221698961--221699132 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
221698951 CACTAGGATG
* *
221698961 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
221699026 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
221699054 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
221699119 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
221699133 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:221700895 original size:46 final size:46
Alignment explanation
Indices: 221700828--221700999 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
221700818 TGTAACCCGC
* *
221700828 CCATAAGTGAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
221700874 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
221700924 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC--G-GATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
221700964 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
221701000 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 9, Indels: 23
0.77 0.07 0.17
Matches are distributed among these distances:
39 2 0.02
40 3 0.03
41 1 0.01
42 2 0.02
43 27 0.25
46 34 0.32
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:221700992 original size:90 final size:92
Alignment explanation
Indices: 221700836--221701004 Score: 288
Period size: 90 Copynumber: 1.8 Consensus size: 92
221700826 GCCCATAAGT
*
221700836 GAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTC-GGCGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
221700901 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
221700929 GAACTCGGACTCAACTCAACGAGTTC-G-GATCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAAATCAACGAGCTCGGCGATCGCATCCATAAGTGAACTCGGACTCAACTCAAC
221700992 GAGTTCGGATGCC
66 GAGTTCGGATGCC
221701005 CAAATATCCC
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
90 48 0.66
91 1 0.01
93 24 0.33
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAAATCAACGAGCTCGGCGATCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:221703427 original size:30 final size:30
Alignment explanation
Indices: 221703383--221703471 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
221703373 CAAAGATAAC
221703383 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
221703412 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
221703442 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
221703472 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:221703431 original size:15 final size:15
Alignment explanation
Indices: 221703383--221703462 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
221703373 CAAAGATAAC
*
221703383 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
221703397 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
221703412 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
221703427 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
221703442 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
221703457 AAGAAA
1 AAGAAA
221703463 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:221703471 original size:15 final size:15
Alignment explanation
Indices: 221703394--221703471 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
221703384 AGAAAACCGA
221703394 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
221703409 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
221703423 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
221703438 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
221703454 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
221703469 ATA
1 ATA
221703472 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:221706532 original size:93 final size:93
Alignment explanation
Indices: 221706420--221706591 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
221706410 GCCCATAAGT
* *
221706420 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
221706485 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
221706513 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
221706578 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
221706592 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:221706587 original size:46 final size:46
Alignment explanation
Indices: 221706412--221706587 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
221706402 TGTAACCCGC
* * *
221706412 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
221706458 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
221706508 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
221706551 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
221706588 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:221709014 original size:30 final size:30
Alignment explanation
Indices: 221708970--221709058 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
221708960 CAAAGATAAC
221708970 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
221708999 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
221709029 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
221709059 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:221709018 original size:15 final size:15
Alignment explanation
Indices: 221708970--221709049 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
221708960 CAAAGATAAC
*
221708970 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
221708984 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
221708999 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
221709014 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
221709029 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
221709044 AAGAAA
1 AAGAAA
221709050 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:221709058 original size:15 final size:15
Alignment explanation
Indices: 221708981--221709058 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
221708971 AGAAAACCGA
221708981 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
221708996 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
221709010 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
221709025 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
221709041 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
221709056 ATA
1 ATA
221709059 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:221712121 original size:93 final size:93
Alignment explanation
Indices: 221712009--221712180 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
221711999 GCCCATAAGT
* *
221712009 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
221712074 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
221712102 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
221712167 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
221712181 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:221712176 original size:46 final size:46
Alignment explanation
Indices: 221712001--221712176 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
221711991 TGTAACCCGC
* * *
221712001 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
221712047 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
221712097 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
221712140 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
221712177 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:221715534 original size:91 final size:91
Alignment explanation
Indices: 221715427--221715596 Score: 297
Period size: 91 Copynumber: 1.9 Consensus size: 91
221715417 CATAAGTGAA
* *
221715427 CTCGACTCAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CTCGACTCAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
221715492 ACGAGTTCGGATGCCTAGTTACATCT
66 ACGAGTTCGGATGCCTAGTTACATCT
*
221715518 CTCGAACTC-ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CTCG-ACTCAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
221715582 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
221715597 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 71 0.95
92 4 0.05
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (91 bp):
CTCGACTCAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCT
Found at i:221715593 original size:46 final size:46
Alignment explanation
Indices: 221715436--221715593 Score: 173
Period size: 46 Copynumber: 3.5 Consensus size: 46
221715426 ACTCGACTCA
* * *
221715436 ACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGG
* * ***
221715482 ACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACATCTCTCGAACTC--
1 ACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT-GAACTCGG
221715527 ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGG
1 ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGG
221715573 ACTCAACTCAACGAGTTCGGA
1 ACTCAACTCAACGAGTTCGGA
221715594 TGCTCAACCA
Statistics
Matches: 91, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
43 1 0.01
44 9 0.10
45 25 0.27
46 45 0.49
47 10 0.11
48 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (46 bp):
ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGG
Found at i:221715612 original size:46 final size:45
Alignment explanation
Indices: 221715471--221715612 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 45
221715461 CGCATCCATA
221715471 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
221715520 --CGAACTC--ACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
221715561 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
221715608 AGTGA
1 AGTGA
221715613 CATGTCACTT
Statistics
Matches: 77, Mismatches: 4, Indels: 27
0.71 0.04 0.25
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 6 0.08
42 1 0.01
44 6 0.08
45 21 0.27
46 26 0.34
47 7 0.09
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:221724882 original size:93 final size:93
Alignment explanation
Indices: 221724770--221724941 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
221724760 GCCCATAAGT
* *
221724770 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
221724835 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
221724863 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
221724928 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
221724942 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:221724937 original size:46 final size:46
Alignment explanation
Indices: 221724762--221724937 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
221724752 TGTAACCCGC
* * *
221724762 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
221724808 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
221724858 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
221724901 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
221724938 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:221727351 original size:29 final size:29
Alignment explanation
Indices: 221727312--221727399 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
221727302 CAAAGATAAC
*
221727312 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
221727341 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
221727370 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
221727400 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:221727370 original size:15 final size:15
Alignment explanation
Indices: 221727312--221727390 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
221727302 CAAAGATAAC
*
221727312 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
221727326 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
221727341 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
221727355 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
221727370 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
221727385 AAGAAA
1 AAGAAA
221727391 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:221727399 original size:15 final size:15
Alignment explanation
Indices: 221727323--221727399 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
221727313 AGAAAACCGA
221727323 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
221727338 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
221727352 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
221727366 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
221727382 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
221727397 ATA
1 ATA
221727400 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:221732782 original size:29 final size:29
Alignment explanation
Indices: 221732743--221732830 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
221732733 CAAAGATAAC
*
221732743 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
221732772 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
221732801 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
221732831 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:221732801 original size:15 final size:15
Alignment explanation
Indices: 221732743--221732821 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
221732733 CAAAGATAAC
*
221732743 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
221732757 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
221732772 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
221732786 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
221732801 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
221732816 AAGAAA
1 AAGAAA
221732822 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:221732830 original size:15 final size:15
Alignment explanation
Indices: 221732754--221732830 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
221732744 AGAAAACCGA
221732754 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
221732769 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
221732783 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
221732797 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
221732813 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
221732828 ATA
1 ATA
221732831 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:221735842 original size:93 final size:93
Alignment explanation
Indices: 221735730--221735901 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
221735720 GCCCATAAGT
* *
221735730 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
221735795 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
221735823 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
221735888 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
221735902 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:221735897 original size:46 final size:46
Alignment explanation
Indices: 221735722--221735897 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
221735712 TGTAACCCGC
* * *
221735722 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
221735768 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
221735818 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
221735861 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
221735898 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:221744666 original size:39 final size:40
Alignment explanation
Indices: 221744475--221744659 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
221744465 TCGAATGATG
* * *
221744475 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
221744515 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
221744555 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
221744595 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
221744636 -CCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
221744660 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
39 14 0.11
40 109 0.82
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:221748483 original size:47 final size:47
Alignment explanation
Indices: 221748429--221748669 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
221748419 TTAGGATTTT
** * *
221748429 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
221748476 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
221748523 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
221748570 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
221748617 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
221748664 ATGTGA
1 ATGTGA
221748670 AATATGTATG
Statistics
Matches: 180, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 180 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:221748504 original size:25 final size:25
Alignment explanation
Indices: 221748476--221748554 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
221748466 CGAATGGCCA
221748476 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
221748501 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
*
221748523 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
221748548 ATGTGAT
1 ATGTGAT
221748555 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 8 0.20
23 8 0.20
24 9 0.22
25 15 0.38
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:221748529 original size:22 final size:22
Alignment explanation
Indices: 221748458--221748576 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
221748448 GTATATATGA
221748458 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
221748480 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
221748505 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
221748527 GATGAATGTG-AGCAT-GCATATATGT
1 GAT-AA-G-GCCGAATGGC-CA-ATGT
221748552 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
221748574 GAT
1 GAT
221748577 GAATGTGAGC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 19 0.27
23 18 0.25
24 18 0.25
25 16 0.23
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:221748625 original size:25 final size:25
Alignment explanation
Indices: 221748550--221748625 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
221748540 ATGCATATAT
221748550 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
221748575 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
221748597 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
221748622 GTGA
1 GTGA
221748626 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:221748798 original size:98 final size:96
Alignment explanation
Indices: 221748640--221748823 Score: 316
Period size: 98 Copynumber: 1.9 Consensus size: 96
221748630 GAACATGCAT
*
221748640 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
221748705 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
221748736 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
221748800 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
221748824 GGCGATGTGC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
95 1 0.01
96 27 0.33
97 2 0.02
98 53 0.64
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:221748839 original size:50 final size:48
Alignment explanation
Indices: 221748639--221748823 Score: 309
Period size: 48 Copynumber: 3.8 Consensus size: 48
221748629 TGAACATGCA
221748639 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
221748687 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
221748735 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
221748785 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
221748824 GGCGATGTGC
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
47 1 0.01
48 81 0.63
49 4 0.03
50 41 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:221749019 original size:37 final size:37
Alignment explanation
Indices: 221748969--221749076 Score: 153
Period size: 37 Copynumber: 2.9 Consensus size: 37
221748959 TGAAATATAT
* *
221748969 TCCGGATAAGACCCGATGACTAAGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
221749006 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
221749043 TCTGGGTAAGACCAGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
221749077 TCGTCTGAGC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:221750347 original size:17 final size:17
Alignment explanation
Indices: 221750327--221750361 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
221750317 ACATTTATCT
*
221750327 TTTGAAAATTCGTGTCC
1 TTTGAAAATTCGCGTCC
221750344 TTTGAAAATTCGCGTCC
1 TTTGAAAATTCGCGTCC
221750361 T
1 T
221750362 ACTGCTAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (17 bp):
TTTGAAAATTCGCGTCC
Found at i:221750683 original size:34 final size:34
Alignment explanation
Indices: 221750645--221750722 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 34
221750635 ATGATAGTCT
* *
221750645 AGTATCAGTGTAGGCCTTAGCCCA-TAGTAGTAGC
1 AGTATCAGTATAGGCCTTAGCCCATTAG-AGTAAC
* *
221750679 AGTATCAATATGGGCCTTAGCCCATTAGAGTAAC
1 AGTATCAGTATAGGCCTTAGCCCATTAGAGTAAC
221750713 AGTATCAGTA
1 AGTATCAGTA
221750723 ATGTAACAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
34 35 0.92
35 3 0.08
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (34 bp):
AGTATCAGTATAGGCCTTAGCCCATTAGAGTAAC
Found at i:221750781 original size:22 final size:23
Alignment explanation
Indices: 221750741--221750783 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
221750731 GAAGTCCTAC
*
221750741 CCATCTATCCTCTACACTCCACA
1 CCATCTAGCCTCTACACTCCACA
221750764 CCATCTAGCCT-TACACTCCA
1 CCATCTAGCCTCTACACTCCA
221750784 TTTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.26, C:0.47, G:0.02, T:0.26
Consensus pattern (23 bp):
CCATCTAGCCTCTACACTCCACA
Found at i:221755202 original size:39 final size:38
Alignment explanation
Indices: 221755145--221755250 Score: 140
Period size: 39 Copynumber: 2.7 Consensus size: 38
221755135 ATCACGATTT
*
221755145 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA-TTAACAACTA
* * *
221755185 GCACGATGCCTTCGGGTCTTAGCCCGGATTAGCTACTA
1 GCACAATGCCTTCGGGTCTTAGCCCGGATTAACAACTA
*
221755223 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
221755251 TTATAATTTC
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
38 12 0.20
39 43 0.73
40 4 0.07
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATTAACAACTA
Found at i:221758776 original size:27 final size:27
Alignment explanation
Indices: 221758746--221758963 Score: 216
Period size: 27 Copynumber: 8.2 Consensus size: 27
221758736 TAGGCCATGT
221758746 ATGACCGAAATA-CCCTCATAGGGTAAA
1 ATGACCGAAATACCCCT-ATAGGGTAAA
** *
221758773 ATGATTGAAATACCCCTATATGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
*
221758800 ATGACCGAAATACACCC-ATA-GGAAAA
1 ATGACCGAAATAC-CCCTATAGGGTAAA
*
221758826 ATGACTGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
*
221758853 ATGACC-AAATACCCC-ATAGGGAAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
221758878 ATGAGC-AAGATACCCCTATAAGGTAAA
1 ATGACCGAA-ATACCCCTATAGGGTAAA
* * *
221758905 ATGACCAAAATACCTCTATACGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
** * *
221758932 ATGA-ATATAATATCCCTATAAGGTAAA
1 ATGACCGA-AATACCCCTATAGGGTAAA
221758959 ATGAC
1 ATGAC
221758964 TGATTTTCCC
Statistics
Matches: 161, Mismatches: 21, Indels: 17
0.81 0.11 0.09
Matches are distributed among these distances:
25 19 0.12
26 37 0.23
27 96 0.60
28 9 0.06
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (27 bp):
ATGACCGAAATACCCCTATAGGGTAAA
Found at i:221758952 original size:54 final size:53
Alignment explanation
Indices: 221758746--221758963 Score: 257
Period size: 54 Copynumber: 4.1 Consensus size: 53
221758736 TAGGCCATGT
* * *
221758746 ATGACCGAAATACCCTCATAGGGTAAAATGATTGAAATACCCCTATATGGTAAA
1 ATGACCGAAATACCC-CATAGGGAAAAATGAATGAAATACCCCTATAAGGTAAA
* *
221758800 ATGACCGAAATACACCCATA-GGAAAAATGACTGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATAC-CCCATAGGGAAAAATGAATGAAATACCCCTATAAGGTAAA
221758853 ATGACC-AAATACCCCATAGGGAAAAATG-A-GCAAGATACCCCTATAAGGTAAA
1 ATGACCGAAATACCCCATAGGGAAAAATGAATG-AA-ATACCCCTATAAGGTAAA
* * * * *
221758905 ATGACCAAAATACCTCTATACGGTAAAATGAAT-ATAATATCCCTATAAGGTAAA
1 ATGACCGAAATACC-CCATAGGGAAAAATGAATGA-AATACCCCTATAAGGTAAA
221758959 ATGAC
1 ATGAC
221758964 TGATTTTCCC
Statistics
Matches: 146, Mismatches: 9, Indels: 18
0.84 0.05 0.10
Matches are distributed among these distances:
50 1 0.01
51 8 0.05
52 38 0.26
53 43 0.29
54 52 0.36
55 4 0.03
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (53 bp):
ATGACCGAAATACCCCATAGGGAAAAATGAATGAAATACCCCTATAAGGTAAA
Found at i:221760746 original size:40 final size:40
Alignment explanation
Indices: 221760687--221760817 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 40
221760677 CGGGACTTTA
* * *
221760687 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
221760727 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
221760767 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
221760807 CCCGGATATAA
1 CCCGGATATAA
221760818 TTTCAGCATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:221760850 original size:39 final size:40
Alignment explanation
Indices: 221760704--221760854 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
221760694 ATCACGATTT
* * * *
221760704 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
221760744 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
221760784 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
221760823 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
221760855 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 31 0.32
40 64 0.66
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:221766552 original size:2 final size:2
Alignment explanation
Indices: 221766545--221766576 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
221766535 TCAAATAAAC
221766545 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
221766577 TTCAATTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:221769072 original size:32 final size:32
Alignment explanation
Indices: 221769031--221769093 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
221769021 GTCATAAGAG
221769031 GATGAAACGCATTGATTGAAAACATCACTTGT
1 GATGAAACGCATTGATTGAAAACATCACTTGT
*
221769063 GATGAAACGCATTGATTGAAAGCATCACTTG
1 GATGAAACGCATTGATTGAAAACATCACTTG
221769094 ATACGAGAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.27
Consensus pattern (32 bp):
GATGAAACGCATTGATTGAAAACATCACTTGT
Found at i:221771041 original size:18 final size:17
Alignment explanation
Indices: 221771003--221771046 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
221770993 TAAATATTCT
221771003 ATTAAT-TTAATATATA
1 ATTAATATTAATATATA
221771019 A-TAATATTAATATATA
1 ATTAATATTAATATATA
221771035 ATTTAATATTAA
1 A-TTAATATTAA
221771047 AGAGTTAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 4 0.16
16 12 0.48
18 9 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTAATATTAATATATA
Found at i:221774490 original size:31 final size:31
Alignment explanation
Indices: 221774457--221774521 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 31
221774447 TTGAAGAAAT
221774457 AAAAATAAATAATTTACTAAAATAAATAAATAAAG
1 AAAAATAAATAA--T-C-AAAATAAATAAATAAAG
*
221774492 AAAAATAAATAATCAAAATAAATCAATAAA
1 AAAAATAAATAATCAAAATAAATAAATAAA
221774522 CCAATCAGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 15 0.52
32 1 0.03
33 1 0.03
35 12 0.41
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.23
Consensus pattern (31 bp):
AAAAATAAATAATCAAAATAAATAAATAAAG
Found at i:221776226 original size:40 final size:41
Alignment explanation
Indices: 221776154--221776236 Score: 98
Period size: 40 Copynumber: 2.0 Consensus size: 41
221776144 ATGAAGATGC
* * * *
221776154 TTAAAACTATTTATTTATTATTTTATGTTTTTA-ATTTTTA
1 TTAAAACTACTTATTTATTATTTTAAGATTTTAGAATTTTA
*
221776194 TTAAAACTACTT-TTTATTTTTATTAAGATTTTAGAATTTTA
1 TTAAAACTACTTATTTATTATT-TTAAGATTTTAGAATTTTA
221776235 TT
1 TT
221776237 TTATTATCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.22
40 20 0.56
41 8 0.22
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.61
Consensus pattern (41 bp):
TTAAAACTACTTATTTATTATTTTAAGATTTTAGAATTTTA
Found at i:221794162 original size:40 final size:40
Alignment explanation
Indices: 221794093--221794232 Score: 165
Period size: 40 Copynumber: 3.5 Consensus size: 40
221794083 ACCAAGGCCA
* * * * *
221794093 CGGGACTTAACCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* *
221794133 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * * *
221794173 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
*
221794213 CGGGTCTTAACCCGG-TATAA
1 CGGGTCTTAGCCCGGATATAA
221794233 TTTCCAGCAT
Statistics
Matches: 85, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 4 0.05
40 81 0.95
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
Found at i:221794266 original size:39 final size:40
Alignment explanation
Indices: 221794120--221794270 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
221794110 ATCACGATTT
* * * **
221794120 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
221794160 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
221794200 GCACAATTGCCTTCGGGTCTTAACCCGG-TATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
221794239 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
221794271 CATTCAATTT
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
39 33 0.35
40 60 0.63
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:221796516 original size:49 final size:50
Alignment explanation
Indices: 221796338--221796535 Score: 236
Period size: 50 Copynumber: 4.0 Consensus size: 50
221796328 ATCTATTGTG
* * *
221796338 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * ** **
221796389 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
221796439 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * * *
221796489 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA
221796536 CTTTGGCTAT
Statistics
Matches: 124, Mismatches: 23, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
49 41 0.33
50 45 0.36
51 38 0.31
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:221800959 original size:13 final size:13
Alignment explanation
Indices: 221800941--221800965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
221800931 TAATGGTATA
221800941 TTGAATCCATGAT
1 TTGAATCCATGAT
221800954 TTGAATCCATGA
1 TTGAATCCATGA
221800966 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:221802530 original size:48 final size:48
Alignment explanation
Indices: 221802471--221802932 Score: 879
Period size: 48 Copynumber: 9.6 Consensus size: 48
221802461 AAAGTGTAAT
221802471 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
221802519 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221802567 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221802615 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221802663 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221802711 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
221802759 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221802807 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
221802855 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221802903 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
221802933 TGTTGTAACA
Statistics
Matches: 406, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 406 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:221803027 original size:37 final size:37
Alignment explanation
Indices: 221802977--221803099 Score: 237
Period size: 37 Copynumber: 3.3 Consensus size: 37
221802967 GGAAATATAT
221802977 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
221803014 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
221803051 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
221803088 TCCGGGTAAGAC
1 TCCGGGTAAGAC
221803100 TTCGTAATAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:221805063 original size:40 final size:40
Alignment explanation
Indices: 221805017--221805356 Score: 345
Period size: 40 Copynumber: 8.6 Consensus size: 40
221805007 TGAATGATAC
** *
221805017 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATGTAT
* * * * *
221805057 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATGTAT
* * * * *
221805097 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATGTAT
*
221805137 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
221805176 CCGGACTAAGTTCCGAAGAGACATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAG-CATTCGTGCTAGTGATGTAT
* * *
221805217 -CGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
221805256 CCGGACTAAGT-TCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * *
221805295 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
221805335 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
221805357 ATCATGCTGG
Statistics
Matches: 267, Mismatches: 22, Indels: 22
0.86 0.07 0.07
Matches are distributed among these distances:
39 81 0.30
40 160 0.60
41 26 0.10
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:221805177 original size:39 final size:40
Alignment explanation
Indices: 221805134--221805356 Score: 371
Period size: 40 Copynumber: 5.6 Consensus size: 40
221805124 CTTGTGGTTA
221805134 TATCCGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
221805173 TATCCGGACTAAGTTCCGAAGAGACATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAG-CATTCGTGCTAGTGATG
*
221805214 TAT-CGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
221805253 TATCCGGACTAAGTT-CGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
221805292 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * * *
221805332 CATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCA
221805357 ATCATGCTGG
Statistics
Matches: 174, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
39 65 0.37
40 89 0.51
41 20 0.11
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:221805356 original size:119 final size:119
Alignment explanation
Indices: 221805134--221805356 Score: 369
Period size: 119 Copynumber: 1.9 Consensus size: 119
221805124 CTTGTGGTTA
221805134 TATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGACA
1 TATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGACA
* * *
221805199 TTCGTGCTAGTGATGTATCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATG
66 TTCGTGCTAGTGATGCATCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
221805253 TATCCGGACTAAGTT-CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAG-C
1 TATCCGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGAC
* *
221805316 ATTCGTGCTAGTGATGCATCCGGGCTAGGTCCCGAAGAGCA
65 ATTCGTGCTAGTGATGCAT-CGGACTAAGTCCCGAAGAGCA
221805357 ATCATGCTGG
Statistics
Matches: 97, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
118 19 0.20
119 71 0.73
120 7 0.07
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (119 bp):
TATCCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGACA
TTCGTGCTAGTGATGCATCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:221807518 original size:13 final size:13
Alignment explanation
Indices: 221807500--221807524 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
221807490 TAATGGTATA
221807500 TTGAATCCATGAT
1 TTGAATCCATGAT
221807513 TTGAATCCATGA
1 TTGAATCCATGA
221807525 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:221809090 original size:48 final size:48
Alignment explanation
Indices: 221809031--221809492 Score: 879
Period size: 48 Copynumber: 9.6 Consensus size: 48
221809021 AAAGTGTAAT
221809031 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
221809079 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221809127 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221809175 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221809223 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221809271 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
221809319 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221809367 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
221809415 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
221809463 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
221809493 TGTTGTAACA
Statistics
Matches: 406, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 406 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:221809587 original size:37 final size:37
Alignment explanation
Indices: 221809537--221809659 Score: 237
Period size: 37 Copynumber: 3.3 Consensus size: 37
221809527 GGAAATATAT
221809537 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
221809574 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
221809611 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
221809648 TCCGGGTAAGAC
1 TCCGGGTAAGAC
221809660 TTCGTAATAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:221811619 original size:40 final size:39
Alignment explanation
Indices: 221811573--221811910 Score: 229
Period size: 40 Copynumber: 8.5 Consensus size: 39
221811563 TGAATGATAC
*
221811573 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTG-ATATAT
* * *
221811613 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGATATAT
* * * * *
221811653 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GATATAT
* * *
221811693 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGATATAT
* * * *
221811732 CCGGACTAAGTTCCGAAGAGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAG-TCC----CGAAG-GCATTTGTGCTAGTGATATAT
* * * * *
221811777 --GGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGATATAT
* * * *
221811815 CCGGACTAAGT-TCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGATATAT
* * * **
221811854 -CGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGATATAT
*
221811893 CCGGGCTAGGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
221811911 AGCAATCATG
Statistics
Matches: 254, Mismatches: 29, Indels: 30
0.81 0.09 0.10
Matches are distributed among these distances:
38 35 0.14
39 73 0.29
40 105 0.41
41 5 0.02
42 2 0.01
43 8 0.03
45 26 0.10
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATATAT
Found at i:221811733 original size:39 final size:40
Alignment explanation
Indices: 221811690--221811914 Score: 325
Period size: 39 Copynumber: 5.6 Consensus size: 40
221811680 CTTGTGGTTA
221811690 TATCCGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
221811729 TATCCGGACTAAGTTCCGAAGAGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCC-----GAAGAGCATTCGTGCTAGTGATG
*
221811774 TAT--GGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
221811812 TATCCGGACTAAGTT-CGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
221811851 TAT-CGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * * *
221811890 CATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCA
221811915 ATCATGCTGG
Statistics
Matches: 170, Mismatches: 6, Indels: 19
0.87 0.03 0.10
Matches are distributed among these distances:
38 36 0.21
39 59 0.35
40 37 0.22
43 12 0.07
45 26 0.15
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:221812136 original size:24 final size:25
Alignment explanation
Indices: 221812091--221812140 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
221812081 GTGTAATAAC
221812091 GAATGAATAAGAGCACTATGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
* *
221812116 GAATGATTAAG-GCACTGTGTGTGT
1 GAATGAATAAGAGCACTATGTGTGT
221812140 G
1 G
221812141 TAAATCCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (25 bp):
GAATGAATAAGAGCACTATGTGTGT
Found at i:221814075 original size:13 final size:13
Alignment explanation
Indices: 221814057--221814081 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
221814047 TAATGGTATA
221814057 TTGAATCCATGAT
1 TTGAATCCATGAT
221814070 TTGAATCCATGA
1 TTGAATCCATGA
221814082 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:221818381 original size:40 final size:40
Alignment explanation
Indices: 221818326--221818535 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
221818316 AACATTGGAA
221818326 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
221818366 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
221818406 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
221818446 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
221818485 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
221818526 CTATATCCGG
1 ATATATCCGG
221818536 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:221826504 original size:40 final size:40
Alignment explanation
Indices: 221826449--221826698 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
221826439 AACATTGGAA
221826449 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
221826489 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
221826529 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
221826569 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
221826609 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
221826648 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
221826689 CTATATCCGG
1 ATATATCCGG
221826699 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:221839145 original size:49 final size:47
Alignment explanation
Indices: 221839029--221839253 Score: 157
Period size: 47 Copynumber: 4.7 Consensus size: 47
221839019 ATTGAGATGA
* * * * *
221839029 GAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCA-AGATAT
1 GAGCCAATGGAAGACCTGTCTGGGACATGGCATCGACCT-AGATATAT
* * * * *
221839075 GCAAGCCAGTGTAAGAGCTGTCTAGGACATGGCATCGACCTCGATATAT
1 G--AGCCAATGGAAGACCTGTCTGGGACATGGCATCGACCTAGATATAT
** * * * *
221839124 GAAAGTTAATGGAAGACCTGTCTGGGACATGGCATTGACTTAGATGTGT
1 G--AGCCAATGGAAGACCTGTCTGGGACATGGCATCGACCTAGATATAT
* * * * *
221839173 GAGCCAATGTAAGACCTGTCTGGGACATGGCATCAACATAGATGTGT
1 GAGCCAATGGAAGACCTGTCTGGGACATGGCATCGACCTAGATATAT
* * * *
221839220 GAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
1 GAGCCAATGGAAGACC-TGTCTGGGACATGGCAT
221839254 TGGCATCGTA
Statistics
Matches: 147, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
46 1 0.01
47 55 0.37
48 39 0.27
49 52 0.35
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
GAGCCAATGGAAGACCTGTCTGGGACATGGCATCGACCTAGATATAT
Found at i:221839195 original size:47 final size:47
Alignment explanation
Indices: 221839131--221839255 Score: 178
Period size: 47 Copynumber: 2.6 Consensus size: 47
221839121 TATGAAAGTT
* *
221839131 AATGGAAGACCTGTCTGGGACATGGCATTGACTTAGATGTGTGAGCC
1 AATGTAAGACCTGTCTGGGACATGGCATTGACATAGATGTGTGAGCC
**
221839178 AATGTAAGACCTGTCTGGGACATGGCATCAACATAGATGTGTGAGCC
1 AATGTAAGACCTGTCTGGGACATGGCATTGACATAGATGTGTGAGCC
* * *
221839225 AGTGTAAGACCATGTTTGGAACATGGCATTG
1 AATGTAAGACC-TGTCTGGGACATGGCATTG
221839256 GCATCGTATC
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 53 0.78
48 15 0.22
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (47 bp):
AATGTAAGACCTGTCTGGGACATGGCATTGACATAGATGTGTGAGCC
Found at i:221847496 original size:45 final size:45
Alignment explanation
Indices: 221847447--221847536 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
221847437 AAAAAAAAGA
221847447 AAAAAAATGATAGCAAATCAAATTTAAAAAAAATAGTTTCAATAC
1 AAAAAAATGATAGCAAATCAAATTTAAAAAAAATAGTTTCAATAC
221847492 AAAAAAATGATAGCAAATCAAATTTAAAAAAAATAGTTTCAATAC
1 AAAAAAATGATAGCAAATCAAATTTAAAAAAAATAGTTTCAATAC
221847537 TTCTTTAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.60, C:0.09, G:0.07, T:0.24
Consensus pattern (45 bp):
AAAAAAATGATAGCAAATCAAATTTAAAAAAAATAGTTTCAATAC
Found at i:221847823 original size:8 final size:8
Alignment explanation
Indices: 221847810--221847840 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
221847800 TTTAACATAA
221847810 ATTTTAAT
1 ATTTTAAT
221847818 ATTTTAAT
1 ATTTTAAT
221847826 ATTTTAAT
1 ATTTTAAT
221847834 ATTTTAA
1 ATTTTAA
221847841 AAAATTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
ATTTTAAT
Found at i:221849646 original size:40 final size:40
Alignment explanation
Indices: 221849594--221849674 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
221849584 TTGCAATAGT
* *
221849594 TTAATCATATAAACCTAAAAACTATGCGAGATAATAGAGC
1 TTAATCACATAAACCTAAAAACTATGCAAGATAATAGAGC
221849634 TTAATCACATAAACCTAAAAACTATGCAAGATAATAGAGC
1 TTAATCACATAAACCTAAAAACTATGCAAGATAATAGAGC
221849674 T
1 T
221849675 AACTAAAGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.48, C:0.16, G:0.11, T:0.25
Consensus pattern (40 bp):
TTAATCACATAAACCTAAAAACTATGCAAGATAATAGAGC
Found at i:221860289 original size:40 final size:40
Alignment explanation
Indices: 221860215--221860360 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
221860205 CCGCACCAAG
* * * * * *
221860215 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
221860255 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
221860295 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
221860335 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
221860361 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:221860375 original size:40 final size:40
Alignment explanation
Indices: 221860247--221860398 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
221860237 ATCACGATTT
* * * * *
221860247 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
221860287 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
221860327 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
221860367 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
221860399 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:221868765 original size:30 final size:30
Alignment explanation
Indices: 221868729--221868788 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
221868719 TTCCCGAGCC
221868729 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
221868759 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
221868789 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:221869261 original size:47 final size:46
Alignment explanation
Indices: 221869210--221869386 Score: 218
Period size: 47 Copynumber: 3.8 Consensus size: 46
221869200 TGGTTGAACA
221869210 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG
* *
221869257 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
221869302 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
221869350 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
221869387 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 8, Indels: 19
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.33
47 58 0.51
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:221876321 original size:30 final size:30
Alignment explanation
Indices: 221876285--221876344 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
221876275 TTCCCGAGCC
221876285 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
221876315 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
221876345 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:221876817 original size:47 final size:46
Alignment explanation
Indices: 221876766--221876942 Score: 218
Period size: 47 Copynumber: 3.8 Consensus size: 46
221876756 TGGTTGAACA
221876766 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG
* *
221876813 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
221876858 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
221876906 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
221876943 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 8, Indels: 19
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.33
47 58 0.51
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:221883878 original size:30 final size:30
Alignment explanation
Indices: 221883842--221883901 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
221883832 TTCCCGAGCC
221883842 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
221883872 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
221883902 CGTATTAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:221884374 original size:47 final size:46
Alignment explanation
Indices: 221884323--221884499 Score: 218
Period size: 47 Copynumber: 3.8 Consensus size: 46
221884313 TGGTTGAACA
221884323 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG
* *
221884370 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
221884415 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
221884463 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
221884500 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 8, Indels: 19
0.81 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.33
47 58 0.51
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:221891941 original size:27 final size:28
Alignment explanation
Indices: 221891856--221891952 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
221891846 TCACAAATTG
* * *
221891856 GCACTAAGTGTGCG-GTTCAAATTATACA
1 GCACTAAGTGTGCGAGTTC-GACTATATA
* * *
221891884 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCGACTATATA
221891912 GCACTAAGT-TGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGACTATAT-A
221891939 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
221891953 GGCTTATTGC
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.02
27 22 0.37
28 33 0.56
29 3 0.05
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGACTATATA
Found at i:221893672 original size:45 final size:46
Alignment explanation
Indices: 221893586--221893713 Score: 213
Period size: 45 Copynumber: 2.8 Consensus size: 46
221893576 TGGTTGAGCA
*
221893586 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
221893632 TCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
221893677 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
221893714 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 42 0.55
46 35 0.45
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Done.