Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 703 of 770
Found at i:221901126 original size:46 final size:46
Alignment explanation
Indices: 221901076--221901251 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
221901066 TGGTTGAGCA
221901076 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
221901122 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
221901167 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
221901215 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
221901252 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:221901232 original size:93 final size:93
Alignment explanation
Indices: 221901073--221901244 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
221901063 GGATGGTTGA
* *
221901073 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
221901138 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
221901166 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
221901231 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
221901245 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:221907451 original size:39 final size:39
Alignment explanation
Indices: 221907397--221907579 Score: 303
Period size: 39 Copynumber: 4.7 Consensus size: 39
221907387 GAATGTTCGA
221907397 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
221907436 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * * *
221907475 GTGATACCCGGGCTAAGCCCAAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
221907514 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
221907553 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
221907580 CTTTGTGCGG
Statistics
Matches: 132, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 123 0.93
40 9 0.07
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:221912849 original size:29 final size:29
Alignment explanation
Indices: 221912817--221912951 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
221912807 ATACCCTCCG
** * *
221912817 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
221912846 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
221912875 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
221912904 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
221912933 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
221912952 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:221912884 original size:58 final size:58
Alignment explanation
Indices: 221912763--221912952 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
221912753 TACTCGATTT
* * * *** *
221912763 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
221912821 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
221912879 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
221912937 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
221912953 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:221918682 original size:29 final size:30
Alignment explanation
Indices: 221918619--221918689 Score: 135
Period size: 29 Copynumber: 2.4 Consensus size: 30
221918609 NNNNNNNNNN
221918619 ACTAAGTGTGCGAGCTGAAATATATATAGC
1 ACTAAGTGTGCGAGCTGAAATATATATAGC
221918649 ACTAAGTGTGCGAGCTGAAA-ATATATAGC
1 ACTAAGTGTGCGAGCTGAAATATATATAGC
221918678 ACTAAGTGTGCG
1 ACTAAGTGTGCG
221918690 GATCACTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 21 0.51
30 20 0.49
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (30 bp):
ACTAAGTGTGCGAGCTGAAATATATATAGC
Found at i:221926518 original size:30 final size:30
Alignment explanation
Indices: 221926482--221926642 Score: 231
Period size: 30 Copynumber: 5.5 Consensus size: 30
221926472 GACAAGATTG
* * * * *
221926482 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
221926512 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
221926540 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
221926570 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
221926600 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
221926629 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
221926643 GATTCACTAT
Statistics
Matches: 122, Mismatches: 5, Indels: 9
0.90 0.04 0.07
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 20 0.16
30 76 0.62
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:221926573 original size:58 final size:58
Alignment explanation
Indices: 221926482--221926642 Score: 227
Period size: 58 Copynumber: 2.8 Consensus size: 58
221926472 GACAAGATTG
* * * * * *
221926482 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAG-CTGAATTATATA
221926540 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTG--AATTATATA
221926600 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCG
221926643 GATTCACTAT
Statistics
Matches: 94, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
57 2 0.02
58 41 0.44
59 20 0.21
60 31 0.33
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAATTATATA
Found at i:221933736 original size:26 final size:26
Alignment explanation
Indices: 221933700--221933808 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
221933690 CATGAAATTC
221933700 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
221933726 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
221933752 TTATCATGGAATATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
*
221933777 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
221933803 TTATCA
1 TTATCA
221933809 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 24 0.30
26 55 0.70
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:221933794 original size:51 final size:52
Alignment explanation
Indices: 221933700--221933808 Score: 184
Period size: 51 Copynumber: 2.1 Consensus size: 52
221933690 CATGAAATTC
221933700 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
* * *
221933752 TTATCATGGAATATTTACCTAA-CCATTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
221933803 TTATCA
1 TTATCA
221933809 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 34 0.63
52 20 0.37
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
Found at i:221939525 original size:24 final size:26
Alignment explanation
Indices: 221939436--221939541 Score: 166
Period size: 25 Copynumber: 4.2 Consensus size: 26
221939426 CATGAAATTC
221939436 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
221939461 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
221939487 TTATCATGGAA-ATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
221939512 TT-TCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
221939536 TTATCA
1 TTATCA
221939542 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
23 2 0.03
24 20 0.27
25 40 0.53
26 13 0.17
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:221939535 original size:49 final size:51
Alignment explanation
Indices: 221939436--221939541 Score: 173
Period size: 49 Copynumber: 2.1 Consensus size: 51
221939426 CATGAAATTC
221939436 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
*
221939487 TTATCATGGAA-ATTTACCTAATCCATT-TCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCATTATCATGAAACATTTACCTAACCCA
221939536 TTATCA
1 TTATCA
221939542 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
49 23 0.43
50 15 0.28
51 15 0.28
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (51 bp):
TTATCATGAAACATTTACCTAACCATTATCATGAAACATTTACCTAACCCA
Found at i:221945015 original size:29 final size:28
Alignment explanation
Indices: 221944982--221945081 Score: 123
Period size: 29 Copynumber: 3.6 Consensus size: 28
221944972 GTGACGAGAT
221944982 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
221945011 TGGCACTAAGTGTGCGTGCTGG-AAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAATA
**
221945038 T-GCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGG-AAAATA
* **
221945066 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
221945082 AGCTCGAGGG
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.29
27 4 0.06
28 7 0.11
29 33 0.53
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGTGCTGGAAAATA
Found at i:221952941 original size:29 final size:29
Alignment explanation
Indices: 221952908--221953010 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
221952898 GTGACGAGAT
221952908 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
221952937 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
221952966 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
221952995 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
221953011 AGCTCGGAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:221960949 original size:71 final size:71
Alignment explanation
Indices: 221960863--221961026 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
221960853 CGATTTGTCT
221960863 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
221960928 CTTTCA
66 CTTTCA
221960934 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
221960999 CTTTCA
66 CTTTCA
221961005 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
221961027 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:221961064 original size:71 final size:70
Alignment explanation
Indices: 221960863--221961060 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
221960853 CGATTTGTCT
* * * *
221960863 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
221960928 CTTTCA
65 CTTTCA
* * * *
221960934 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
221960999 CTTTCA
65 CTTTCA
* *
221961005 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
221961061 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:221976044 original size:29 final size:29
Alignment explanation
Indices: 221976012--221976092 Score: 90
Period size: 29 Copynumber: 2.8 Consensus size: 29
221976002 ATACCCTCCG
* *
221976012 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
221976041 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
221976070 AGCACGCACACTTAGTGCCATAT
1 AGCTCGCACACCCAGTGCCATAT
221976093 TCATACCACA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:221980878 original size:39 final size:40
Alignment explanation
Indices: 221980747--221980884 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
221980737 GGATATAACG
* * * **
221980747 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCCGG-TTATAGCG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGATT-TAGTA
*
221980787 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * *
221980827 ACTTGCAC-AATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
*
221980865 ACTCACACGAATGCCTTCGG
1 ACTCGCACGAATGCCTTCGG
221980885 ATCCTAGTCC
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
38 21 0.25
39 23 0.27
40 36 0.43
41 4 0.05
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:221982645 original size:40 final size:40
Alignment explanation
Indices: 221982587--221982754 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
221982577 CAATTGAATG
* *
221982587 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
221982628 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
221982667 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
221982707 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
221982747 ATATCCGG
1 ATATCCGG
221982755 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:221982725 original size:80 final size:79
Alignment explanation
Indices: 221982587--221982754 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
221982577 CAATTGAATG
* * *
221982587 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
221982652 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
221982667 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
221982731 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
221982747 ATATCCGG
1 ATATCCGG
221982755 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:221990714 original size:40 final size:39
Alignment explanation
Indices: 221990594--221990760 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 39
221990584 CAATTGAATG
* *
221990594 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTG--TT
* *
221990635 -TATCCGGGCTAATA-CCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TGTT
* *
221990673 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-GTT
*
221990713 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-GTT
221990753 ATATCCGG
1 ATATCCGG
221990761 TTGTATTCCG
Statistics
Matches: 112, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
38 5 0.04
39 29 0.26
40 78 0.70
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGTT
Found at i:221990725 original size:79 final size:79
Alignment explanation
Indices: 221990594--221990760 Score: 221
Period size: 79 Copynumber: 2.1 Consensus size: 79
221990584 CAATTGAATG
* * *
221990594 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATA-CCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
221990658 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
221990673 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
221990737 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
221990753 ATATCCGG
1 ATATCCGG
221990761 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
78 2 0.03
79 45 0.58
80 30 0.39
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:221995339 original size:29 final size:28
Alignment explanation
Indices: 221995295--221995389 Score: 120
Period size: 29 Copynumber: 3.4 Consensus size: 28
221995285 TTGTATCTGG
* *
221995295 CCATTAAGCCC-AATCATATTCATATGGC
1 CCATTAGGCCCAAATCACATT-ATATGGC
*
221995323 CCATTAGGCCCAAATCACCTGTATATGGC
1 CCATTAGGCCCAAATCACAT-TATATGGC
*
221995352 CCATTAGGCCCAAATCACATTATATGGG
1 CCATTAGGCCCAAATCACATTATATGGC
*
221995380 CCGTTAGGCC
1 CCATTAGGCC
221995390 TAGTCACATT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
28 26 0.44
29 32 0.54
30 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (28 bp):
CCATTAGGCCCAAATCACATTATATGGC
Found at i:221997732 original size:38 final size:38
Alignment explanation
Indices: 221997677--221997836 Score: 228
Period size: 38 Copynumber: 4.4 Consensus size: 38
221997667 AATCATGCAT
*
221997677 TGGGCCGTAGCCCTTTTCATATTTCATATTTCATAATAC
1 TGGGCCGAAG-CCTTTTCATATTTCATATTTCATAATAC
*
221997716 TGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATAC
1 TGGGCCGAAGCCTTTTCATATTTCATATTTCATAATAC
221997754 TGGGCCGAAGCCTTTTCATATTTC--A--T-AT--TAC
1 TGGGCCGAAGCCTTTTCATATTTCATATTTCATAATAC
*
221997785 T-GGCCGAAGCCTTTTCATGTTTCATATTTCATAATAC
1 TGGGCCGAAGCCTTTTCATATTTCATATTTCATAATAC
221997822 TGGGCCGAAGCCTTT
1 TGGGCCGAAGCCTTT
221997837 ACTGTAAATG
Statistics
Matches: 109, Mismatches: 4, Indels: 17
0.84 0.03 0.13
Matches are distributed among these distances:
30 21 0.19
31 4 0.04
32 1 0.01
33 2 0.02
34 2 0.02
35 2 0.02
36 1 0.01
37 4 0.04
38 63 0.58
39 9 0.08
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.39
Consensus pattern (38 bp):
TGGGCCGAAGCCTTTTCATATTTCATATTTCATAATAC
Found at i:221997792 original size:30 final size:31
Alignment explanation
Indices: 221997736--221997812 Score: 129
Period size: 30 Copynumber: 2.5 Consensus size: 31
221997726 CCTTTTCATG
*
221997736 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
221997767 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
*
221997797 TTTCATGTTTCATATT
1 TTTCATATTTCATATT
221997813 TCATAATACT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 26 0.59
31 18 0.41
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:221997808 original size:68 final size:69
Alignment explanation
Indices: 221997698--221997836 Score: 262
Period size: 68 Copynumber: 2.0 Consensus size: 69
221997688 CCTTTTCATA
221997698 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
221997763 GCCT
66 GCCT
*
221997767 TTTCATATTTCATATTACT-GGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
221997831 GCCT
66 GCCT
221997835 TT
1 TT
221997837 ACTGTAAATG
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
68 51 0.74
69 18 0.26
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.40
Consensus pattern (69 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
GCCT
Found at i:221998073 original size:24 final size:24
Alignment explanation
Indices: 221998027--221998121 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
221998017 GCTTTATCAT
*
221998027 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
221998052 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
221998076 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
221998099 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
221998122 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:221998106 original size:47 final size:49
Alignment explanation
Indices: 221998027--221998120 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
221998017 GCTTTATCAT
*
221998027 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
221998076 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
221998121 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:221998218 original size:19 final size:20
Alignment explanation
Indices: 221998172--221998230 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
221998162 TATGATTACC
221998172 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
221998192 TCATGTGCGTATCATACAT-
1 TCATGTGCATATCATACATA
*
221998211 TTATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
221998231 CCATATTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:221998305 original size:25 final size:25
Alignment explanation
Indices: 221998273--221998320 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
221998263 ATACATAAAC
* * *
221998273 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
221998298 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
221998321 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:222002055 original size:28 final size:28
Alignment explanation
Indices: 222001990--222002090 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
222001980 ATAGTGAATC
*
222001990 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
222002019 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
222002047 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
222002077 CGCACACTTAGTGC
1 CGCACACTTAGTGC
222002091 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:222010003 original size:28 final size:28
Alignment explanation
Indices: 222009938--222010038 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
222009928 ATAGTGAATC
*
222009938 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
222009967 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
222009995 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
222010025 CGCACACTTAGTGC
1 CGCACACTTAGTGC
222010039 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:222013951 original size:22 final size:22
Alignment explanation
Indices: 222013925--222013969 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
222013915 TATAACTTAT
222013925 CTCGTAAGATTTGCAACACTAG
1 CTCGTAAGATTTGCAACACTAG
222013947 CTCGTAAGATTTGCAACACTAG
1 CTCGTAAGATTTGCAACACTAG
222013969 C
1 C
222013970 CTCAGTGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (22 bp):
CTCGTAAGATTTGCAACACTAG
Found at i:222017936 original size:28 final size:28
Alignment explanation
Indices: 222017871--222017971 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
222017861 ATAGTGAATC
*
222017871 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
222017900 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
222017928 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
222017958 CGCACACTTAGTGC
1 CGCACACTTAGTGC
222017972 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:222022088 original size:24 final size:24
Alignment explanation
Indices: 222022061--222022138 Score: 129
Period size: 24 Copynumber: 3.2 Consensus size: 24
222022051 TGCAAAGACA
222022061 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
222022085 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
222022109 TATGGCACTATGTGTGCGATTACATC
1 TATGGCACTATGTGTGCGATT-CA-C
222022135 TATG
1 TATG
222022139 TGTGCGATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
24 44 0.88
25 1 0.02
26 5 0.10
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:222022139 original size:42 final size:45
Alignment explanation
Indices: 222022061--222022210 Score: 135
Period size: 48 Copynumber: 3.5 Consensus size: 45
222022051 TGCAAAGACA
222022061 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCACTAT-G--CTATGTGTGCGATTTAC
222022109 TATGGCACTATGTGTGCGATT-AC-AT-CTATGTGTGCGA-TT--
1 TATGGCACTATGTGTGCGATTCACTATGCTATGTGTGCGATTTAC
* *
222022148 TAT-G---TA--TGTGCGATTTACTATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTCACTAT-G--CTATGTGTGCGATTTAC
*
222022190 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
222022211 TGCTATAGTC
Statistics
Matches: 87, Mismatches: 0, Indels: 30
0.74 0.00 0.26
Matches are distributed among these distances:
33 9 0.10
34 2 0.02
35 4 0.05
38 1 0.01
39 15 0.17
40 2 0.02
41 2 0.02
42 15 0.17
43 1 0.01
46 4 0.05
47 2 0.02
48 30 0.34
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (45 bp):
TATGGCACTATGTGTGCGATTCACTATGCTATGTGTGCGATTTAC
Found at i:222022183 original size:24 final size:24
Alignment explanation
Indices: 222022154--222022218 Score: 112
Period size: 24 Copynumber: 2.7 Consensus size: 24
222022144 GATTTATGTA
* *
222022154 TGTGCGATTTACTATGGCACTATG
1 TGTGCGATTTGCTATAGCACTATG
222022178 TGTGCGATTTGCTATAGCACTATG
1 TGTGCGATTTGCTATAGCACTATG
222022202 TGTGCGATTTGCTATAG
1 TGTGCGATTTGCTATAG
222022219 TCACATTCGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.38
Consensus pattern (24 bp):
TGTGCGATTTGCTATAGCACTATG
Found at i:222030148 original size:24 final size:24
Alignment explanation
Indices: 222029976--222030146 Score: 288
Period size: 24 Copynumber: 7.1 Consensus size: 24
222029966 GCAAAGACCA
*
222029976 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
222030000 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
222030024 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
222030048 TATGGCACTATGTGTGCGATACAC
1 TATGGCACTATGTGTGCGATTTAC
222030072 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
222030096 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
222030120 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
222030144 TAT
1 TAT
222030147 AGTCACATTC
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 140 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:222032136 original size:22 final size:23
Alignment explanation
Indices: 222032111--222032156 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
222032101 CAACCAAACC
222032111 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
222032133 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
222032156 A
1 A
222032157 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:222032162 original size:23 final size:23
Alignment explanation
Indices: 222032118--222032162 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
222032108 ACCAATTCAA
*
222032118 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
222032141 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
222032163 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:222038900 original size:27 final size:28
Alignment explanation
Indices: 222038843--222038912 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
222038833 AAATTTGTAC
**
222038843 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
222038871 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
222038898 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
222038913 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:222038921 original size:27 final size:27
Alignment explanation
Indices: 222038843--222038924 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
222038833 AAATTTGTAC
* *
222038843 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
222038871 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
222038898 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
222038925 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:222051348 original size:29 final size:29
Alignment explanation
Indices: 222051315--222051388 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
222051305 CCTTCGAGCT
222051315 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
222051344 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
222051373 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
222051389 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:222051349 original size:58 final size:58
Alignment explanation
Indices: 222051256--222051388 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
222051246 ATACTCGATT
* * * * *
222051256 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
222051314 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
222051372 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
222051389 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:222053960 original size:50 final size:49
Alignment explanation
Indices: 222053837--222053986 Score: 216
Period size: 50 Copynumber: 3.0 Consensus size: 49
222053827 GCCTAGCCTC
*
222053837 TTTTAATAACTGGGGCGA-AAGCCCTTTTAATAACTGGGGCATAAGCCC--
1 TTTTAATAACT-GGGC-ATAAGCCCTTTTGATAACTGGGGCATAAGCCCTT
*
222053885 TTTTAATAACTGAGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTT
1 TTTTAATAACTG-GGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTT
*
222053935 TTTTAATAACTAGGGTATAAGCCCTTTTGATAACTGGGGCATAAGCCCTT
1 TTTTAATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTT
222053985 TT
1 TT
222053987 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 4, Indels: 8
0.89 0.04 0.08
Matches are distributed among these distances:
47 2 0.02
48 42 0.45
50 48 0.52
51 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (49 bp):
TTTTAATAACTGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTT
Found at i:222053987 original size:24 final size:24
Alignment explanation
Indices: 222053817--222053986 Score: 218
Period size: 24 Copynumber: 7.0 Consensus size: 24
222053807 GCTTTATCAT
*
222053817 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
222053842 ATAACTGGGGCGA-AAGCCCTTTTA
1 ATAACTGGGGC-ATAAGCCCTTTTA
222053866 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
222053890 ATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
222053914 ATAACTAGGGCATAAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
* * *
222053940 ATAACTAGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
222053964 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
222053987 GCACTTCCTC
Statistics
Matches: 130, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.01
24 95 0.73
25 12 0.09
26 22 0.17
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:222054058 original size:20 final size:20
Alignment explanation
Indices: 222054033--222054099 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
222054023 TTATGAATAC
* *
222054033 ATCATGTGCCTATCATATAT
1 ATCATGTGCATATCATACAT
*
222054053 ATCATGTGAATATCATACAT
1 ATCATGTGCATATCATACAT
*
222054073 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
222054093 ACCATGT
1 ATCATGT
222054100 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:222059025 original size:40 final size:40
Alignment explanation
Indices: 222058901--222059033 Score: 155
Period size: 40 Copynumber: 3.3 Consensus size: 40
222058891 GGGCTAAGTC
* * *
222058901 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGC-GAGTTACTATAACCGGACTAAGAT
* *
222058941 CCAAAGGCATTCGTGCGAGTTACTA-AATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGACTAAGAT
* *
222058981 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-T
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
222059020 CCCGAAGGCATTTG
1 -CCGAAGGCATTTG
222059034 AATGAGTTGC
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
39 2 0.03
40 70 0.88
41 8 0.10
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
Found at i:222060939 original size:29 final size:29
Alignment explanation
Indices: 222060907--222060979 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
222060897 CTTCGAGCTC
* *
222060907 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
222060936 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
222060965 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
222060980 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:222068761 original size:29 final size:29
Alignment explanation
Indices: 222068729--222068801 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
222068719 CTTCGAGCTC
* *
222068729 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
222068758 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
222068787 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
222068802 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:222069998 original size:16 final size:17
Alignment explanation
Indices: 222069961--222070002 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
222069951 GAATGAACAT
222069961 TTTCTTTTTTTTTTTCATA
1 TTTC-TTTTTTTTTTCA-A
222069980 TTTCTTTTTTTTTTC-A
1 TTTCTTTTTTTTTTCAA
222069996 TTTCTTT
1 TTTCTTT
222070003 ATTCTTTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.35
18 11 0.48
19 4 0.17
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTCTTTTTTTTTTCAA
Found at i:222076836 original size:39 final size:39
Alignment explanation
Indices: 222076743--222076965 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 39
222076733 CGGATGATAA
* * *
222076743 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGCT-ACTAA-T
*
222076783 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGCTACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
* *
222076822 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AT
* *
222076862 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
* * *
222076900 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AT
222076941 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
222076966 AGCTAGTGGC
Statistics
Matches: 164, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 69 0.42
40 89 0.54
41 4 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
Found at i:222076874 original size:79 final size:79
Alignment explanation
Indices: 222076742--222076965 Score: 285
Period size: 79 Copynumber: 2.8 Consensus size: 79
222076732 TCGGATGATA
* * *
222076742 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTA-ATTCCGGGCTAAGTCCCGAAGGCA
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGCT-ACTATA-TCCGGGCTAAGTCCCGAAGGCA
*
222076804 TTTGTGTGAGCTACTAAT
63 TTTGTGCGAGCTA-TAAT
* * *
222076822 -CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTT
* *
222076886 GTGCGAGTTATTAT
66 GTGCGAGCTATAAT
* *
222076900 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTT
222076965 G
66 G
222076966 AGCTAGTGGC
Statistics
Matches: 127, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
78 3 0.02
79 120 0.94
80 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (79 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGCTATAAT
Found at i:222076979 original size:40 final size:40
Alignment explanation
Indices: 222076739--222076988 Score: 255
Period size: 40 Copynumber: 6.3 Consensus size: 40
222076729 TGTTCGGATG
* *
222076739 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGACT
*
222076779 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGCT-ACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACT
* * * *
222076819 A-ATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCT-ATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* * * *
222076858 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
222076898 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
222076937 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
222076977 ATATCC-GGCTAA
1 ATAACCGGGCTAA
222076989 ACTCCGAAGG
Statistics
Matches: 187, Mismatches: 15, Indels: 17
0.85 0.07 0.08
Matches are distributed among these distances:
39 79 0.42
40 105 0.56
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:222076998 original size:79 final size:79
Alignment explanation
Indices: 222076783--222076988 Score: 251
Period size: 79 Copynumber: 2.6 Consensus size: 79
222076773 GTGGCTAATT
*
222076783 CCGGGCTAAGTCCCGAAGGCATTT-G-T-GTGAGCTACTAATCCGGGCTAAGTCCCGAAGGCGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGGCTAGTG-GCTA-T-ATCCGGGCTAAGTCCCGAAGGCATT
* * *
222076845 TGTGCGAGCTATTATAT
63 TGTGCAAGCTACTATAA
* ***
222076862 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG-GCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
222076926 TGCAAGTTACTATAA
65 TGCAAGCTACTATAA
222076941 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTG-GCTAGTGGCTATATCCGGGCTAA
222076989 ACTCCGAAGG
Statistics
Matches: 108, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
79 99 0.92
80 3 0.03
81 2 0.02
82 2 0.02
83 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAA
Found at i:222084899 original size:40 final size:40
Alignment explanation
Indices: 222084844--222085090 Score: 253
Period size: 40 Copynumber: 6.2 Consensus size: 40
222084834 CGGATGATAA
* *
222084844 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATAT
* *
222084884 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
*
222084924 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATAT
*
222084964 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
* * *
222085002 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
* *
222085043 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATAT
222085083 CC-GGCTAA
1 CCGGGCTAA
222085091 ACTCCGAAGG
Statistics
Matches: 178, Mismatches: 16, Indels: 27
0.81 0.07 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 39 0.22
40 128 0.72
41 5 0.03
42 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
Found at i:222085056 original size:119 final size:120
Alignment explanation
Indices: 222084844--222085067 Score: 326
Period size: 119 Copynumber: 1.9 Consensus size: 120
222084834 CGGATGATAA
* * *
222084844 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
* * *
222084909 TGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
66 TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
* * * *
222084964 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTC
*
222085027 GTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
65 GTGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
222085068 AGCTAGTGGC
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
119 64 0.70
120 28 0.30
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAT
Found at i:222085100 original size:79 final size:79
Alignment explanation
Indices: 222084884--222085090 Score: 283
Period size: 79 Copynumber: 2.6 Consensus size: 79
222084874 GTGGCTAATT
* *
222084884 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
222084949 TGCGAGCTATTATAT
65 TGCAAGCTACTATAA
*
222084964 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
222085028 TGCAAGTTACTATAA
65 TGCAAGCTACTATAA
* * *
222085043 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
222085091 ACTCCGAAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 74 0.65
80 38 0.34
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAA
Found at i:222086751 original size:40 final size:40
Alignment explanation
Indices: 222086688--222086867 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
222086678 ATTCGGATTG
222086688 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
222086727 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
222086767 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
222086807 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
222086847 ATATCC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
222086868 TACTTGGTTT
Statistics
Matches: 130, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
38 8 0.06
39 21 0.16
40 101 0.78
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:222094678 original size:40 final size:40
Alignment explanation
Indices: 222094618--222094837 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
222094608 ATTCGGATTG
222094618 ATAACC-GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
222094656 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
222094696 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
222094736 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
222094776 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
222094816 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
222094838 TACTTGGTTT
Statistics
Matches: 169, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
38 5 0.03
39 23 0.14
40 141 0.83
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:222103173 original size:39 final size:39
Alignment explanation
Indices: 222103119--222103230 Score: 188
Period size: 39 Copynumber: 2.8 Consensus size: 39
222103109 GAATGTTCGA
222103119 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
*
222103158 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* *
222103197 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTG
222103231 TGGGTTACCA
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 54 0.78
40 15 0.22
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
Found at i:222110708 original size:6 final size:6
Alignment explanation
Indices: 222110678--222110808 Score: 90
Period size: 6 Copynumber: 21.3 Consensus size: 6
222110668 AAGAAACATT
* * *
222110678 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCA-A GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
222110727 ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
222110776 ATCAGT ATCAGGTA A-CAGG ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
222110809 GTGAAGGCAA
Statistics
Matches: 96, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
5 5 0.05
6 79 0.82
7 8 0.08
8 4 0.04
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:222110728 original size:37 final size:37
Alignment explanation
Indices: 222110687--222110786 Score: 146
Period size: 37 Copynumber: 2.7 Consensus size: 37
222110677 TATCAGAACT
* *
222110687 AGAATCAAAATGAGAATCAGAATCAGAATCAAGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAAGTGAC
* *
222110724 AGAATCAGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAAGTGAC
* *
222110761 AGAATTAGAATCAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAGAATCAG
222110787 GTAACAGGAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGAATCAAGTGAC
Found at i:222110736 original size:31 final size:31
Alignment explanation
Indices: 222110699--222110808 Score: 112
Period size: 31 Copynumber: 3.4 Consensus size: 31
222110689 AATCAAAATG
222110699 AGAATCAGAATCAGAATCAAGTGACAGAATC
1 AGAATCAGAATCAGAATCAAGTGACAGAATC
*
222110730 AGAATCAGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATC---A--A-GTGACAGAATC
* * * *
222110767 AGAATCAGAATCAGTATCAGGTAACAGGATC
1 AGAATCAGAATCAGAATCAAGTGACAGAATC
*
222110798 AAAATCAGAAT
1 AGAATCAGAAT
222110809 GTGAAGGCAA
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
31 36 0.55
34 2 0.03
36 1 0.02
37 27 0.41
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAGTGACAGAATC
Found at i:222110808 original size:37 final size:36
Alignment explanation
Indices: 222110690--222110808 Score: 113
Period size: 37 Copynumber: 3.4 Consensus size: 36
222110680 CAGAACTAGA
* * *
222110690 ATCAAAATGAGAATCAGAATCAGAATCAAGTGACAGA
1 ATCAAAATCAGAATCAGAATCAGAATCAGGT-ACAGG
* *
222110727 ATCAGAATCAGAATCAGAATCAGAATTAGGT----G
1 ATCAAAATCAGAATCAGAATCAGAATCAGGTACAGG
* * *
222110759 A-CAGAATTAGAATCAGAATCAGTATCAGGTAACAGG
1 ATCAAAATCAGAATCAGAATCAGAATCAGGT-ACAGG
222110795 ATCAAAATCAGAAT
1 ATCAAAATCAGAAT
222110809 GTGAAGGCAA
Statistics
Matches: 66, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
31 26 0.39
32 1 0.02
36 2 0.03
37 37 0.56
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (36 bp):
ATCAAAATCAGAATCAGAATCAGAATCAGGTACAGG
Found at i:222110974 original size:27 final size:27
Alignment explanation
Indices: 222110926--222110979 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
222110916 GCGAGGCTGC
*
222110926 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
222110953 CAGATATTGTGGCTAGGCCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
222110980 AATAAAGCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:222111938 original size:27 final size:27
Alignment explanation
Indices: 222111908--222112290 Score: 489
Period size: 27 Copynumber: 14.2 Consensus size: 27
222111898 AACACCCTAG
** *
222111908 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
222111935 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
222111962 AGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
222111989 GGGTGAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
222112016 GTGTAAAACGGTAATTCTATAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
222112043 AGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
222112070 AGGTAAAAC-GATAATTCTGTAAATCGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
*
222112097 GGGTAAAACAATAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
222112124 GGGTAAAATAGTAACTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
222112151 GGGTAAAACAATAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
222112178 TGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
222112205 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
222112232 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* **
222112259 GGGTAAAATAGTAATTTTGTATTTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
222112286 GGGTA
1 GGGTA
222112291 CTCTGATAAT
Statistics
Matches: 310, Mismatches: 44, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 309 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:222112342 original size:27 final size:27
Alignment explanation
Indices: 222112312--222112436 Score: 76
Period size: 27 Copynumber: 4.7 Consensus size: 27
222112302 TTACATATCA
*
222112312 AGGGTATTTCAATAATTTTGCAAACTG
1 AGGGTATTTCAATAATTTTACAAACTG
*** *
222112339 AGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCAATAATTTTACAAACTG
* *** *
222112366 AGGATATTTGGGTAATTTTATAAA-TCG
1 AGGGTATTTCAATAATTTTACAAACT-G
* ** *
222112393 GGGGTACTTT-GGTAATTTTAC-AACTA
1 AGGGTA-TTTCAATAATTTTACAAACTG
*
222112419 AGGGTATTTCAGTAATTT
1 AGGGTATTTCAATAATTT
222112437 CGTAAATTAA
Statistics
Matches: 80, Mismatches: 14, Indels: 9
0.78 0.14 0.09
Matches are distributed among these distances:
25 3 0.04
26 15 0.19
27 59 0.74
28 3 0.04
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCAATAATTTTACAAACTG
Found at i:222112374 original size:54 final size:54
Alignment explanation
Indices: 222112282--222112436 Score: 143
Period size: 54 Copynumber: 2.9 Consensus size: 54
222112272 ATTTTGTATT
* * * * *
222112282 TCGAGGGTACTCTGATAATTTTACATATCAAGGGTATTTCAATAATTTTGCAAA
1 TCGAGGGTACTTTGGTAATTTTACAAATCAAGGATATTTCAATAATTTTACAAA
* ** *** *
222112336 -CTGAGGGTATTTTGGTAATTTTACAAATTGAGGATATTTGGGTAATTTTATAAA
1 TC-GAGGGTACTTTGGTAATTTTACAAATCAAGGATATTTCAATAATTTTACAAA
* * * *
222112390 TCGGGGGTACTTTGGTAATTTTACAACT-AAGGGTATTTCAGTAATTT
1 TCGAGGGTACTTTGGTAATTTTACAAATCAAGGATATTTCAATAATTT
222112437 CGTAAATTAA
Statistics
Matches: 80, Mismatches: 19, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
53 16 0.20
54 63 0.79
55 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
TCGAGGGTACTTTGGTAATTTTACAAATCAAGGATATTTCAATAATTTTACAAA
Found at i:222113585 original size:30 final size:30
Alignment explanation
Indices: 222113551--222113611 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
222113541 TACCGCTACG
222113551 CACTCTGATCCTACTATCACTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
222113581 CACTCTGATCCTACTATCACTATCACACTT
1 CACTCTGATCCTACTATCACTATCACACTT
222113611 C
1 C
222113612 CACTAGAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.38, G:0.03, T:0.33
Consensus pattern (30 bp):
CACTCTGATCCTACTATCACTATCACACTT
Found at i:222117521 original size:40 final size:39
Alignment explanation
Indices: 222117457--222117644 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 39
222117447 GCTACTCGTT
* * * ** *
222117457 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
222117497 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
*
222117537 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * * * *
222117576 CAATTGCCTTCGGGCTTAGCCCGGATGTCACAATTTGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
222117615 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
222117645 CTCGAACATT
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 87 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:222117572 original size:39 final size:39
Alignment explanation
Indices: 222117493--222117645 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
222117483 TATGGTAACC
* *
222117493 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
222117533 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
222117572 CGCACAATTGCCTTCGGGCTTAGCCCGGATGTCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
222117611 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
222117646 TCGAACATTT
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:222117623 original size:78 final size:79
Alignment explanation
Indices: 222117462--222117644 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
222117452 TCGTTCAAAC
* * **
222117462 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATC
222117527 ACAACTCGCACAATT
65 ACAACTCGCACAATT
* * * *
222117542 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATGTCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
* *
222117606 CAATTTGCACAATT
66 CAACTCGCACAATT
222117620 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
222117645 CTCGAACATT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 51 0.55
79 33 0.35
80 9 0.10
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAATT
Found at i:222135991 original size:40 final size:40
Alignment explanation
Indices: 222135906--222136056 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
222135896 AATTGAATGA
* * *
222135906 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
222135946 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
222135987 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
222136026 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
222136057 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:222136070 original size:40 final size:40
Alignment explanation
Indices: 222135943--222136072 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
222135933 ATGCTGGAAA
* * * *
222135943 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
222135983 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
222136023 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
222136063 TTATATCCGG
1 TTATATCCGG
222136073 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:222144003 original size:40 final size:40
Alignment explanation
Indices: 222143918--222144068 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
222143908 AATTGAATGA
* * *
222143918 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
222143958 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
222143999 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
222144038 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
222144069 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:222144082 original size:40 final size:40
Alignment explanation
Indices: 222143955--222144084 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
222143945 ATGCTGGAAA
* * * *
222143955 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
222143995 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
222144035 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
222144075 TTATATCCGG
1 TTATATCCGG
222144085 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:222148885 original size:65 final size:64
Alignment explanation
Indices: 222148807--222148994 Score: 218
Period size: 64 Copynumber: 2.9 Consensus size: 64
222148797 GCCGAGTGAC
* * *
222148807 ATCATGT-GTACAAGA-AGGCTACGAGATCTATATAGTAGCTAGGTCACATGTGTGATACGGGAT
1 ATCATGTAG-ACAAGAGA-GCTACGAGAACAAAAT-GTAGCTAGGTCACATGTGTGATACGGGAT
222148870 GT
63 GT
* *
222148872 ATCATGTAGACAAGAGAGCTACGTGAAGAAAATGTAGCTAGGTCACATGTGTGATACGGGATGT
1 ATCATGTAGACAAGAGAGCTACGAGAACAAAATGTAGCTAGGTCACATGTGTGATACGGGATGT
* * * *
222148936 ATCCCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGAT
1 AT--CATGTAGACAAGAGAGCTACGAGA-ACA-AAATGTAGCTAGGTCACATGTGTGAT
222148995 TCCAAGTGAA
Statistics
Matches: 110, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
64 33 0.30
65 24 0.22
66 26 0.24
67 3 0.03
68 24 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (64 bp):
ATCATGTAGACAAGAGAGCTACGAGAACAAAATGTAGCTAGGTCACATGTGTGATACGGGATGT
Found at i:222148923 original size:64 final size:67
Alignment explanation
Indices: 222148841--222148994 Score: 260
Period size: 64 Copynumber: 2.3 Consensus size: 67
222148831 GATCTATATA
222148841 GTAGCTAGGTCACATGTGTGATACGGGATGTAT-CATGTAGACAAGAGAGCTACGTGA-AGA-AA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCATGTAGACAAGAGAGCTACGTGAGAGATAA
222148903 AT
66 AT
222148905 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTAT-CCATGTAGACAAGAGAGCTACGTGAGAGATA
222148970 AAT
65 AAT
* *
222148973 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
222148995 TCCAAGTGAA
Statistics
Matches: 84, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
64 33 0.39
66 24 0.29
67 3 0.04
68 24 0.29
ACGTcount: A:0.32, C:0.14, G:0.31, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCATGTAGACAAGAGAGCTACGTGAGAGATAA
AT
Found at i:222149068 original size:66 final size:67
Alignment explanation
Indices: 222148874--222149068 Score: 188
Period size: 66 Copynumber: 2.9 Consensus size: 67
222148864 CGGGATGTAT
* * * *
222148874 CATGTAGACAAGAGAGCTACGTGAAGA-AAATGTAGCTAGGTCACATGTGTGATA-C--GGGATG
1 CATGTAGACAAGAGAGCTACG-G-AGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGAAG
*
222148935 TATC-C
63 GA-CAC
*
222148940 CATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGAA
1 CATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGAA
222149005 GGACAC
62 GGACAC
* *
222149011 CATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
222149069 TTCACCATGT
Statistics
Matches: 111, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
66 44 0.40
67 12 0.11
68 27 0.24
69 1 0.01
70 1 0.01
71 26 0.23
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (67 bp):
CATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGAC
AC
Found at i:222151645 original size:68 final size:70
Alignment explanation
Indices: 222151573--222151770 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
222151563 ACACCCTGTA
* * * *
222151573 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
222151635 ATAAAT
65 ATAAAT
*
222151641 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
222151706 ATAAAT
65 ATAAAT
*
222151712 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
222151771 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:222151684 original size:41 final size:41
Alignment explanation
Indices: 222151639--222151756 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
222151629 TGAAAGATAA
222151639 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
222151680 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222151710 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222151751 ATGTAG
1 ATGTAG
222151757 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:222151696 original size:71 final size:71
Alignment explanation
Indices: 222151607--222151770 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
222151597 GAGATGTATC
222151607 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222151672 AGGACA
66 AGGACA
222151678 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222151743 AGGACA
66 AGGACA
222151749 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
222151771 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:222159206 original size:68 final size:70
Alignment explanation
Indices: 222159134--222159331 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
222159124 ACACCCTGTA
* * * *
222159134 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
222159196 ATAAAT
65 ATAAAT
*
222159202 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
222159267 ATAAAT
65 ATAAAT
*
222159273 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
222159332 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:222159245 original size:41 final size:41
Alignment explanation
Indices: 222159200--222159317 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
222159190 TGAAAGATAA
222159200 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
222159241 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222159271 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222159312 ATGTAG
1 ATGTAG
222159318 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:222159257 original size:71 final size:71
Alignment explanation
Indices: 222159168--222159331 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
222159158 GAGATGTATC
222159168 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222159233 AGGACA
66 AGGACA
222159239 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222159304 AGGACA
66 AGGACA
222159310 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
222159332 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:222160892 original size:28 final size:28
Alignment explanation
Indices: 222160860--222160926 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
222160850 GAGATTGGCT
*
222160860 CTAAGTGTGCGAGTTTAATT-GTATAGCA
1 CTAAGTGTGCGAGTTTAATTATTA-AGCA
*
222160888 CTAAGTGTGCGAGTTTGATTATTAAGCA
1 CTAAGTGTGCGAGTTTAATTATTAAGCA
222160916 CTAAGTGTGCG
1 CTAAGTGTGCG
222160927 GACTTACTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 34 0.94
29 2 0.06
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTAATTATTAAGCA
Found at i:222162479 original size:29 final size:28
Alignment explanation
Indices: 222162445--222162547 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
222162435 TACTCAATCA
*
222162445 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
222162474 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
222162503 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
222162532 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
222162548 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:222170420 original size:29 final size:29
Alignment explanation
Indices: 222170359--222170431 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
222170349 TACTCAATCA
* *
222170359 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATATGATCCAAACC
* *
222170388 CGCACACATAGTGCCATAT-AGTCCAAACT
1 CGCACACTTAGTGCCATATGA-TCCAAACC
*
222170417 CGCACAGTTAGTGCC
1 CGCACACTTAGTGCC
222170432 GTACATTACA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
28 1 0.03
29 36 0.97
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATGATCCAAACC
Found at i:222174375 original size:41 final size:41
Alignment explanation
Indices: 222174330--222174447 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
222174320 TGAAAGATAA
222174330 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
222174371 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222174401 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222174442 ATGTAG
1 ATGTAG
222174448 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:222174386 original size:71 final size:71
Alignment explanation
Indices: 222174298--222174461 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
222174288 GAGATGTATC
222174298 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222174363 AGGACA
66 AGGACA
222174369 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222174434 AGGACA
66 AGGACA
222174440 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
222174462 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:222181904 original size:41 final size:41
Alignment explanation
Indices: 222181859--222181976 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
222181849 TGAAAGATAA
222181859 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
222181900 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222181930 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222181971 ATGTAG
1 ATGTAG
222181977 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:222181915 original size:71 final size:71
Alignment explanation
Indices: 222181827--222181990 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
222181817 GAGATGTATC
222181827 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222181892 AGGACA
66 AGGACA
222181898 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222181963 AGGACA
66 AGGACA
222181969 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
222181991 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:222187480 original size:50 final size:49
Alignment explanation
Indices: 222187343--222187587 Score: 276
Period size: 49 Copynumber: 5.0 Consensus size: 49
222187333 GTAGCCGAAG
* * * * *
222187343 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
* * *
222187392 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AA
* * * *
222187442 CCATCTGATACATGTAGTAGCCTGCACTTAGTACTACACA-TTGATCGAA
1 CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA
* * * * *
222187491 GTTATCAGATACGCGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
* * *
222187541 CAATCTGGTACACGTAGTAGGCTGCACTTAGTACTACACACGTGACC
1 CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
222187588 TCACAATAGC
Statistics
Matches: 163, Mismatches: 29, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
49 85 0.52
50 76 0.47
51 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
CTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
Found at i:222187558 original size:99 final size:99
Alignment explanation
Indices: 222187345--222187580 Score: 323
Period size: 99 Copynumber: 2.4 Consensus size: 99
222187335 AGCCGAAGCT
* * * *
222187345 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGATACACGTAGT
* *
222187410 AGCCTGCACTTAGTACTACACACGTGACCTAACC
66 AGCCTGCACTTAGTACTACACACGCGACCTAACA
* * * * *
222187444 ATCTGATACATGTAGTAGCCTGCACTTAGTACTACACAT-TGATCGAAGTTATCAGATACGCGTA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCAGATACACGTA
*
222187508 GTAGCCTGCACTTAGTACTACACATGCGACC-AACA
64 GTAGCCTGCACTTAGTACTACACACGCGACCTAACA
*
222187543 ATCTGGTACACGTAGTAGGCTGCACTTAGTACTACACA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
222187581 CGTGACCTCA
Statistics
Matches: 120, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
98 2 0.02
99 76 0.63
100 42 0.35
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (99 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGATACACGTAGT
AGCCTGCACTTAGTACTACACACGCGACCTAACA
Found at i:222190697 original size:38 final size:36
Alignment explanation
Indices: 222190640--222190857 Score: 126
Period size: 43 Copynumber: 5.5 Consensus size: 36
222190630 AAACCAAGTA
*
222190640 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTACTG
1 CCTTC-GGACTTAGCCCGGATATAGCTACTCGC-ACTG
*
222190677 CCTTCGAGACTTAACCCGG--ATAG-TAACTCGCACAAATG
1 CCTTCG-GACTTAGCCCGGATATAGCT-ACTCGCAC---TG
222190715 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
1 CCTTC-GGACTTAGCCCGGATATAGCT-ACTCGCAC---TG
222190755 CCTTCGGACTTAGCCCGGTTATATAG-TAACTCGCACAAATG
1 CCTTCGGACTTAGCCCGG--ATATAGCT-ACTCGCAC---TG
222190796 CCTTCGGGACTTAGCCCGGTTATCATAG-TAACTCGCACAAATG
1 CCTTC-GGACTTAGCCCGG--AT-ATAGCT-ACTCGCAC---TG
222190839 CCTTCGGGACTTAGCCCGG
1 CCTTC-GGACTTAGCCCGG
222190858 TTATCATCCG
Statistics
Matches: 165, Mismatches: 3, Indels: 20
0.88 0.02 0.11
Matches are distributed among these distances:
35 3 0.02
36 11 0.07
37 10 0.06
38 22 0.13
39 14 0.08
40 24 0.15
41 26 0.16
42 17 0.10
43 38 0.23
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (36 bp):
CCTTCGGACTTAGCCCGGATATAGCTACTCGCACTG
Found at i:222190792 original size:81 final size:81
Alignment explanation
Indices: 222190640--222190861 Score: 300
Period size: 81 Copynumber: 2.8 Consensus size: 81
222190630 AAACCAAGTA
* *
222190640 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTAC---TGCCTTCGAGACTTAACCCGG----
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGC-ACAAATGCCTTCG-GACTTAGCCCGGTTAT
222190696 ATAGTAACTCGCACAAATG
63 ATAGTAACTCGCACAAATG
222190715 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTATATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTATATA
222190780 GTAACTCGCACAAATG
66 GTAACTCGCACAAATG
222190796 CCTTCGGGACTTAGCCCGGTTATCATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA
1 CCTTCGGGACTTAGCCCGG--AT-ATAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGGTTA
222190861 T
62 T
222190862 CATCCGAATA
Statistics
Matches: 132, Mismatches: 2, Indels: 16
0.88 0.01 0.11
Matches are distributed among these distances:
75 16 0.12
76 16 0.12
77 11 0.08
78 8 0.06
81 38 0.29
83 2 0.02
84 24 0.18
85 17 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (81 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTTATATA
GTAACTCGCACAAATG
Found at i:222190864 original size:43 final size:42
Alignment explanation
Indices: 222190696--222190861 Score: 302
Period size: 43 Copynumber: 4.0 Consensus size: 42
222190686 CTTAACCCGG
222190696 ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG--AT
1 ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
222190736 ATAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGGTTAT
1 ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
222190777 ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
222190819 CATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 -ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
222190862 CATCCGAATA
Statistics
Matches: 122, Mismatches: 0, Indels: 5
0.96 0.00 0.04
Matches are distributed among these distances:
39 13 0.11
40 24 0.20
41 26 0.21
42 17 0.14
43 42 0.34
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (42 bp):
ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
Found at i:222204340 original size:40 final size:40
Alignment explanation
Indices: 222204295--222204424 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
222204285 CGGAATATAA
222204295 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
222204335 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
222204375 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
222204415 CCGGATATAA
1 CCGGATATAA
222204425 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:222204439 original size:40 final size:39
Alignment explanation
Indices: 222204311--222204461 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
222204301 ATAACCATGT
* * *
222204311 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
222204351 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
222204391 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
222204430 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
222204462 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:222204445 original size:80 final size:79
Alignment explanation
Indices: 222204295--222204461 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
222204285 CGGAATATAA
*
222204295 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
222204360 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
222204375 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
222204437 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
222204454 CCGGATAT
1 CCGGATAT
222204462 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:222207381 original size:13 final size:13
Alignment explanation
Indices: 222207363--222207388 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
222207353 ATATTATAAT
222207363 TATTTTATGTTAA
1 TATTTTATGTTAA
222207376 TATTTTATGTTAA
1 TATTTTATGTTAA
222207389 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:222215755 original size:29 final size:29
Alignment explanation
Indices: 222215722--222215786 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
222215712 GTGACGAGAT
222215722 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
222215751 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
222215780 CGGCACT
1 TGGCACT
222215787 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:222227573 original size:40 final size:40
Alignment explanation
Indices: 222227514--222227720 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
222227504 CAATTGAATG
* * * *
222227514 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * ** *
222227554 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
222227594 ACATCCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
222227633 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
222227673 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
222227713 ATATCCGG
1 ATATCCGG
222227721 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 30 0.22
40 108 0.78
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:222227651 original size:79 final size:80
Alignment explanation
Indices: 222227515--222227720 Score: 229
Period size: 79 Copynumber: 2.6 Consensus size: 80
222227505 AATTGAATGA
* * ** * ** * *
222227515 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
222227580 TTGTGCTAG-CG-AC
66 TTGTGCAAGTCGTAC
* *
222227593 TACATCCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGC
* *
222227657 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
222227674 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
222227721 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 61 0.57
80 43 0.40
81 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:222230051 original size:38 final size:38
Alignment explanation
Indices: 222230000--222230237 Score: 404
Period size: 38 Copynumber: 6.3 Consensus size: 38
222229990 ATATTCGATG
*
222230000 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
222230038 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* *
222230076 TATATCCGGGTAAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
222230114 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
222230152 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* * *
222230190 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
222230228 TATATTCGGG
1 TATATCCGGG
222230238 CCTTTGAGCC
Statistics
Matches: 191, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 191 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
Found at i:222231801 original size:40 final size:40
Alignment explanation
Indices: 222231756--222231885 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
222231746 CGGAATACAA
222231756 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
222231796 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
222231836 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
222231876 CCGGATATAA
1 CCGGATATAA
222231886 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:222231900 original size:40 final size:40
Alignment explanation
Indices: 222231756--222231919 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
222231746 CGGAATACAA
* **
222231756 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
222231796 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
222231836 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
222231876 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
222231916 CCGG
1 CCGG
222231920 TATCATTCAA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:222239942 original size:40 final size:40
Alignment explanation
Indices: 222239799--222239964 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
222239789 CGGAATACAA
* **
222239799 CCGGATATAACCACGTGCACAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
* *
222239838 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
222239878 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
222239918 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
222239957 CCGGATAT
1 CCGGATAT
222239965 CATTCAATTT
Statistics
Matches: 103, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 30 0.29
40 73 0.71
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:222241767 original size:10 final size:11
Alignment explanation
Indices: 222241740--222241771 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
222241730 GGCAACATTA
222241740 TGGT-GAGTGT
1 TGGTGGAGTGT
222241750 TGGTGGAGTGT
1 TGGTGGAGTGT
222241761 TGG-GGAGTGT
1 TGGTGGAGTGT
222241771 T
1 T
222241772 CTCCGAGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.09, C:0.00, G:0.53, T:0.38
Consensus pattern (11 bp):
TGGTGGAGTGT
Found at i:222246768 original size:41 final size:41
Alignment explanation
Indices: 222246723--222246840 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
222246713 TGAAAGATAA
222246723 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
222246764 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222246794 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222246835 ATGTAG
1 ATGTAG
222246841 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:222246779 original size:71 final size:71
Alignment explanation
Indices: 222246691--222246854 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
222246681 GAGATGTATC
222246691 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222246756 AGGACA
66 AGGACA
222246762 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222246827 AGGACA
66 AGGACA
222246833 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
222246855 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:222250557 original size:28 final size:28
Alignment explanation
Indices: 222250505--222250660 Score: 192
Period size: 28 Copynumber: 5.5 Consensus size: 28
222250495 TATAGTGAAT
222250505 CCGCACACTTAGTGCTATATATTTTCAG
1 CCGCACACTTAGTGCTATATATTTTCAG
222250533 CCGC-CACTTAGTGCTATATAATTTTCAG
1 CCGCACACTTAGTGCTATAT-ATTTTCAG
*
222250561 -CTCACACTTAGTGCTATATA-TTTCAG
1 CCGCACACTTAGTGCTATATATTTTCAG
*
222250587 TTCGCACACTTAGTGCTATATATTTTCAG
1 -CCGCACACTTAGTGCTATATATTTTCAG
* * * * *
222250616 TTCGCACACTTAGTGCTGTACAATTTTAAA
1 -CCGCACACTTAGTGCTATA-TATTTTCAG
222250646 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
222250661 CAATCTTGTC
Statistics
Matches: 115, Mismatches: 7, Indels: 11
0.86 0.05 0.08
Matches are distributed among these distances:
26 6 0.05
27 18 0.16
28 46 0.40
29 39 0.34
30 6 0.05
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATATATTTTCAG
Found at i:222250577 original size:55 final size:56
Alignment explanation
Indices: 222250506--222250660 Score: 199
Period size: 55 Copynumber: 2.8 Consensus size: 56
222250496 ATAGTGAATC
222250506 CGCACACTTAGTGCTATATATTTTCAGCCGC-CACTTAGTGCTATATAATTTTCAG-
1 CGCACACTTAGTGCTATATATTTTCAGCCGCACACTTAGTGCTATAT-ATTTTCAGT
* *
222250561 CTCACACTTAGTGCTATATA-TTTCAGTTCGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAG-CCGCACACTTAGTGCTATATATTTTCAG-T
* * * *
222250618 CGCACACTTAGTGCTGTACAATTTTAAACCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCCGCACACTTAGTGC
222250661 CAATCTTGTC
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
54 6 0.07
55 30 0.35
56 15 0.17
57 16 0.19
58 15 0.17
59 4 0.05
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (56 bp):
CGCACACTTAGTGCTATATATTTTCAGCCGCACACTTAGTGCTATATATTTTCAGT
Found at i:222258342 original size:29 final size:29
Alignment explanation
Indices: 222258310--222258439 Score: 219
Period size: 29 Copynumber: 4.5 Consensus size: 29
222258300 ATAGTGAATC
222258310 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
222258339 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
222258369 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
222258398 CGCACACTTAGTGC--TATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
222258425 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
222258440 GTACAATTTT
Statistics
Matches: 98, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
27 27 0.28
29 42 0.43
30 29 0.30
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:222258402 original size:59 final size:56
Alignment explanation
Indices: 222258310--222258439 Score: 215
Period size: 59 Copynumber: 2.3 Consensus size: 56
222258300 ATAGTGAATC
222258310 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGC--TAT-ATTTTCAGCT
* *
222258369 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATTTTCAGCT
222258425 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
222258440 GTACAATTTT
Statistics
Matches: 69, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
56 24 0.35
57 3 0.04
59 42 0.61
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (56 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATTTTCAGCT
Found at i:222266179 original size:29 final size:29
Alignment explanation
Indices: 222266147--222266278 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
222266137 ATAGTGAATC
222266147 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
222266176 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
222266206 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
222266235 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
222266264 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
222266279 GTACAATTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:222266288 original size:59 final size:59
Alignment explanation
Indices: 222266147--222266278 Score: 239
Period size: 59 Copynumber: 2.3 Consensus size: 59
222266137 ATAGTGAATC
222266147 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
* *
222266206 CGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTATAT-ATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
222266264 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
222266279 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 24 0.34
59 47 0.66
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:222278832 original size:40 final size:41
Alignment explanation
Indices: 222278788--222279012 Score: 279
Period size: 40 Copynumber: 5.7 Consensus size: 41
222278778 GCTACTCGTT
* * *
222278788 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
222278828 CAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
222278868 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
222278908 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
222278948 TAAATGCCTTC-GGATCTTAG-TCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
222278988 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
222279013 CATCATTCGA
Statistics
Matches: 168, Mismatches: 12, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
39 26 0.15
40 140 0.83
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:222282693 original size:206 final size:212
Alignment explanation
Indices: 222282407--222282829 Score: 687
Period size: 206 Copynumber: 2.0 Consensus size: 212
222282397 AAATATGCTT
*
222282407 TTCCTTTGAACCCAAAAATTATCGAGGAGATGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
1 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
* * *
222282472 GGAAAAAGTGGTTTTTTTCAGATGTTGAATTGGGGAATTTTAGAGATGAGCAGAT-GAGA-AG-A
66 GGAAAAAGGGGTTTTTTTCAGATGTCGAATTAGGGAATTTTAGAGATGAGCAGATAGAGAGAGCA
*
222282534 GA-A-GAACTTACAGGTGAATTTTAGAGATTTCAAACTGGGGAAGAAAGGG-TTTTTTTCGGATG
131 GAGAGGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAAGGGTTTTTTTTCGGATG
222282596 TCAAATTGGGGAAAAAC
196 TCAAATTGGGGAAAAAC
222282613 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
1 TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
* *
222282678 GGCAAAAGGGGTTTTTTTCGGATGTCGAATTAGGGAATTTTAGAGATGAGCAGATGAGCAGAGAT
66 GGAAAAAGGGGTTTTTTTCAGATGTCGAATTAGGGAATTTTAGAGATGAGCAGAT----AGAGA-
*
222282743 GAGCAGAGAGGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAGGGGTTTTTTTTC
126 GAGCAGAGAGGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAAGGGTTTTTTTTC
222282808 GGATGTCAAATTGGGGAAAAAC
191 GGATGTCAAATTGGGGAAAAAC
222282830 AAGTGATAAT
Statistics
Matches: 198, Mismatches: 8, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
206 114 0.58
211 4 0.02
213 2 0.01
214 3 0.02
215 1 0.01
216 44 0.22
217 30 0.15
ACGTcount: A:0.37, C:0.10, G:0.28, T:0.25
Consensus pattern (212 bp):
TTCCTTTGAACCCAAAAATTATCGAGGAGAGGAGCAGAGAAGAACTTACAGGTGTAAACGAAAAA
GGAAAAAGGGGTTTTTTTCAGATGTCGAATTAGGGAATTTTAGAGATGAGCAGATAGAGAGAGCA
GAGAGGAACTTACAGGTAAATTTTAGAGATTTCAAACTGGGGAAGAAAGGGTTTTTTTTCGGATG
TCAAATTGGGGAAAAAC
Done.