Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 704 of 770
Found at i:222282744 original size:10 final size:10
Alignment explanation
Indices: 222282719--222282751 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
222282709 AGGGAATTTT
222282719 AGAGATGAGC
1 AGAGATGAGC
222282729 --AGATGAGC
1 AGAGATGAGC
222282737 AGAGATGAGC
1 AGAGATGAGC
222282747 AGAGA
1 AGAGA
222282752 GGAACTTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
8 8 0.38
10 13 0.62
ACGTcount: A:0.42, C:0.09, G:0.39, T:0.09
Consensus pattern (10 bp):
AGAGATGAGC
Found at i:222283639 original size:23 final size:23
Alignment explanation
Indices: 222283573--222283642 Score: 61
Period size: 23 Copynumber: 3.1 Consensus size: 23
222283563 CATTAATTAT
222283573 CCTAAA-CCCTAAACCCATAACC
1 CCTAAATCCCTAAACCCATAACC
* *** * ** *
222283595 CATGTCTCCTTAATGCCTTAACC
1 CCTAAATCCCTAAACCCATAACC
222283618 CCTAAATCCCTAAACCCATAACC
1 CCTAAATCCCTAAACCCATAACC
222283641 CC
1 CC
222283643 CAACTCATAG
Statistics
Matches: 31, Mismatches: 16, Indels: 1
0.65 0.33 0.02
Matches are distributed among these distances:
22 2 0.06
23 29 0.94
ACGTcount: A:0.33, C:0.43, G:0.03, T:0.21
Consensus pattern (23 bp):
CCTAAATCCCTAAACCCATAACC
Found at i:222283716 original size:7 final size:7
Alignment explanation
Indices: 222283661--222283751 Score: 51
Period size: 7 Copynumber: 12.6 Consensus size: 7
222283651 AGCCCATTAG
222283661 ACCCTTA
1 ACCCTTA
*
222283668 ACCCCTA
1 ACCCTTA
* *
222283675 AACTTTAA
1 ACCCTT-A
*
222283683 ACCCTAA
1 ACCCTTA
*
222283690 ACCATGT-
1 ACCCT-TA
222283697 ACCCTTA
1 ACCCTTA
222283704 ACCCTTA
1 ACCCTTA
*
222283711 ACCCTTGG
1 ACCCTT-A
222283719 ACCCTTA
1 ACCCTTA
222283726 ACTCC-TA
1 AC-CCTTA
*
222283733 GACCTTTA
1 -ACCCTTA
*
222283741 ACCTTTA
1 ACCCTTA
222283748 ACCC
1 ACCC
222283752 CCAAATCTCT
Statistics
Matches: 63, Mismatches: 14, Indels: 14
0.69 0.15 0.15
Matches are distributed among these distances:
6 1 0.02
7 46 0.73
8 16 0.25
ACGTcount: A:0.30, C:0.38, G:0.04, T:0.27
Consensus pattern (7 bp):
ACCCTTA
Found at i:222283736 original size:15 final size:15
Alignment explanation
Indices: 222283697--222283743 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
222283687 TAAACCATGT
222283697 ACCCTTA-ACCCTTA
1 ACCCTTAGACCCTTA
*
222283711 ACCCTTGGACCCTTA
1 ACCCTTAGACCCTTA
*
222283726 ACTCC-TAGACCTTTA
1 AC-CCTTAGACCCTTA
222283741 ACC
1 ACC
222283744 TTTAACCCCC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 7 0.25
15 19 0.68
16 2 0.07
ACGTcount: A:0.26, C:0.40, G:0.06, T:0.28
Consensus pattern (15 bp):
ACCCTTAGACCCTTA
Found at i:222283860 original size:15 final size:14
Alignment explanation
Indices: 222283840--222283879 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
222283830 TATTAACTCA
222283840 TAAACCATAAACCCC
1 TAAACCATAAA-CCC
*
222283855 TAAACCTTAAACCC
1 TAAACCATAAACCC
222283869 TAAACTCATAA
1 TAAAC-CATAA
222283880 TTCATAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:222283931 original size:14 final size:14
Alignment explanation
Indices: 222283909--222283959 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
222283899 TAAATCATCA
*
222283909 TAAATTATAAACCC
1 TAAACTATAAACCC
*
222283923 TAAACTATATA-CC
1 TAAACTATAAACCC
* *
222283936 TAAACCATAAACCT
1 TAAACTATAAACCC
222283950 TAAACTATAA
1 TAAACTATAA
222283960 TGATAAGTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
13 11 0.37
14 19 0.63
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACTATAAACCC
Found at i:222284335 original size:41 final size:41
Alignment explanation
Indices: 222284235--222284490 Score: 273
Period size: 41 Copynumber: 6.2 Consensus size: 41
222284225 ATGTTTTTGT
* ** * * *
222284235 GGCGCTTTTTGAAAAAATGCCGCTATAAAT-AGAGCAATAGC
1 GGCG-TTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
** *
222284276 GGCGTTTTTCAAAAAAGCGCTACTATAGATCTGAGCATTAGT
1 GGCGTTTTTC-AAAAAGCGCCGCTATAGATCTGAGCATTAGC
* * *
222284318 GGCATTTTTCAATAAGCGCCGCTATAGATCTGAGCATTAAC
1 GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
* * *
222284359 GGTGTTTTT-AGAAAAGCGTCGCCATAGATCTGAGCATTAGC
1 GGCGTTTTTCA-AAAAGCGCCGCTATAGATCTGAGCATTAGC
* * *
222284400 GGCGTTTTTAAAAAAGCGCCGCCATATATCTGAGCATTAGC
1 GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
* * *
222284441 GGCGTTGTTCATAAAGCGCCGCTATAGATATGAGCATTAGC
1 GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
*
222284482 GGCGCTTTT
1 GGCGTTTTT
222284491 GGCAAAACGC
Statistics
Matches: 179, Mismatches: 32, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
40 6 0.03
41 155 0.87
42 18 0.10
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (41 bp):
GGCGTTTTTCAAAAAGCGCCGCTATAGATCTGAGCATTAGC
Found at i:222284505 original size:123 final size:124
Alignment explanation
Indices: 222284266--222284505 Score: 315
Period size: 123 Copynumber: 1.9 Consensus size: 124
222284256 GCTATAAATA
* * * *
222284266 GAGCAATAGCGGCGTTTTTCAAAAAAGCGCTACTATAGATCTGAGCATTAGTGGCATTTTTCAAT
1 GAGCAATAGCGGCGTTTTTCAAAAAAGCGCCACCATAGATCTGAGCATTAGCGGCATTGTTCAAT
* * * *
222284331 AAGCGCCGCTATAGATCTGAGCATTAACGGTGTTTTTAGAAAAGCGTCGCCATAGATCT
66 AAGCGCCGCTATAGATATGAGCATTAACGGCGCTTTTAGAAAAGCGCCGCCATAGATCT
* * * *
222284390 GAGCATTAGCGGCGTTTTT-AAAAAAGCGCCGCCATATATCTGAGCATTAGCGGCGTTGTTC-AT
1 GAGCAATAGCGGCGTTTTTCAAAAAAGCGCCACCATAGATCTGAGCATTAGCGGCATTGTTCAAT
* *
222284453 AAAGCGCCGCTATAGATATGAGCATTAGCGGCGCTTTTGGCAAAA-CGCCGCCA
66 -AAGCGCCGCTATAGATATGAGCATTAACGGCGCTTTTAG-AAAAGCGCCGCCA
222284506 ATAGCACTAA
Statistics
Matches: 100, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
122 2 0.02
123 76 0.76
124 22 0.22
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (124 bp):
GAGCAATAGCGGCGTTTTTCAAAAAAGCGCCACCATAGATCTGAGCATTAGCGGCATTGTTCAAT
AAGCGCCGCTATAGATATGAGCATTAACGGCGCTTTTAGAAAAGCGCCGCCATAGATCT
Found at i:222285832 original size:39 final size:39
Alignment explanation
Indices: 222285778--222285855 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
222285768 GGAATGGTAA
222285778 ACTCATACTAAATTTTTTATGGGTAAACTATAAAAATGT
1 ACTCATACTAAATTTTTTATGGGTAAACTATAAAAATGT
222285817 ACTCATACTAAATTTTTTATGGGTAAACTATAAAAATGT
1 ACTCATACTAAATTTTTTATGGGTAAACTATAAAAATGT
222285856 CACCCAACTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (39 bp):
ACTCATACTAAATTTTTTATGGGTAAACTATAAAAATGT
Found at i:222287180 original size:26 final size:26
Alignment explanation
Indices: 222287150--222287205 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
222287140 GGAAGAGTTT
222287150 TACTGTACATGTTTACCCTTGAAGCA
1 TACTGTACATGTTTACCCTTGAAGCA
222287176 TACTGTACATGTTTACCCTTGAAGCA
1 TACTGTACATGTTTACCCTTGAAGCA
222287202 TACT
1 TACT
222287206 ACTCTATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (26 bp):
TACTGTACATGTTTACCCTTGAAGCA
Found at i:222290988 original size:40 final size:39
Alignment explanation
Indices: 222290943--222291069 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
222290933 CGGAACATAA
222290943 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
222290983 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
222291023 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
222291063 CCGGATA
1 CCGGATA
222291070 AATTTCCAGC
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:222303600 original size:29 final size:29
Alignment explanation
Indices: 222303567--222303698 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
222303557 GTGACGAGAT
222303567 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
222303596 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
222303625 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
222303654 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
222303683 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
222303699 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:222310943 original size:29 final size:29
Alignment explanation
Indices: 222310910--222311041 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
222310900 GTGACGAGAT
222310910 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
222310939 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
222310968 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
222310997 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
222311026 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
222311042 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:222314939 original size:9 final size:9
Alignment explanation
Indices: 222314925--222315150 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
222314915 TATTTAAGTA
222314925 TTATGTAAG
1 TTATGTAAG
*
222314934 TTATGTAAT
1 TTATGTAAG
*
222314943 TTATGATATG
1 TTATG-TAAG
* * *
222314953 ATATAT-AT
1 TTATGTAAG
*
222314961 TTATGTAAA
1 TTATGTAAG
* *
222314970 TTATAT-AT
1 TTATGTAAG
*
222314978 TTATCTAAG
1 TTATGTAAG
*
222314987 TTATATAAG
1 TTATGTAAG
222314996 TTATGTAAG
1 TTATGTAAG
*
222315005 TTATGTAAA
1 TTATGTAAG
*
222315014 TTATGATATAAAA
1 TTATG---T-AAG
*
222315027 TATATTTAAG
1 T-TATGTAAG
222315037 TATTATGTAAG
1 --TTATGTAAG
222315048 TTATGTAAG
1 TTATGTAAG
* *
222315057 TTATAT-AT
1 TTATGTAAG
*
222315065 TTATCTAAG
1 TTATGTAAG
*
222315074 TTATATAAG
1 TTATGTAAG
*
222315083 TTATATAAG
1 TTATGTAAG
*
222315092 TTATGTATG
1 TTATGTAAG
*
222315101 TTATATAAG
1 TTATGTAAG
222315110 TTATGTAAG
1 TTATGTAAG
* *
222315119 TTATATATG
1 TTATGTAAG
*
222315128 TTATATAAG
1 TTATGTAAG
*
222315137 TTATGTAAA
1 TTATGTAAG
222315146 TTATG
1 TTATG
222315151 ATATCAAATA
Statistics
Matches: 171, Mismatches: 35, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
8 16 0.09
9 131 0.77
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:222315004 original size:18 final size:18
Alignment explanation
Indices: 222314925--222315150 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
222314915 TATTTAAGTA
* *
222314925 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
222314943 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
222314961 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
222314978 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
222314996 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
222315014 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
*
222315037 TATTATGTAAGTTATGTAAG
1 --TTATGTAAGTTATATAAG
* * *
222315057 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
222315074 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
222315092 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
222315110 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * *
222315128 TTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
222315146 TTATG
1 TTATG
222315151 ATATCAAATA
Statistics
Matches: 167, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
17 37 0.22
18 97 0.58
19 7 0.04
20 7 0.04
21 4 0.02
22 4 0.02
23 6 0.04
25 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:222315017 original size:27 final size:27
Alignment explanation
Indices: 222314978--222315150 Score: 159
Period size: 27 Copynumber: 6.2 Consensus size: 27
222314968 AATTATATAT
*
222314978 TTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
222315005 TTATGTAAATTATGATATAAAATATATTTAAG
1 TTATGT-AAGT-T-ATAT-AAGT-TATGTAAG
* * *
222315037 TATTATGTAAGTTATGTAAGTTATAT-AT
1 --TTATGTAAGTTATATAAGTTATGTAAG
* *
222315065 TTATCTAAGTTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
*
222315092 TTATGTATGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
222315119 TTATATATGTTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAGTTATGTAAG
222315146 TTATG
1 TTATG
222315151 ATATCAAATA
Statistics
Matches: 120, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
26 22 0.18
27 59 0.49
28 4 0.03
29 5 0.04
30 7 0.06
31 6 0.05
32 8 0.07
33 3 0.03
34 6 0.05
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATATAAGTTATGTAAG
Found at i:222315035 original size:114 final size:114
Alignment explanation
Indices: 222314901--222315122 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
222314891 ACTAGTTATG
* * * *
222314901 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATAT-ATTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-ATATATAAGTTAT
* *
222314965 GTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
* *
222315015 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
* * *
222315080 AAGTTATATAAGTTATGTATGTTATATAAGTTATGTAAGTTAT
66 AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTAT
222315123 ATATGTTATA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 4 0.04
113 18 0.19
114 73 0.77
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
Found at i:222315275 original size:15 final size:15
Alignment explanation
Indices: 222315255--222315310 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
222315245 AAGTAGCAGG
222315255 ATTAAATAATATTTA
1 ATTAAATAATATTTA
222315270 ATTAAATAATATTT-
1 ATTAAATAATATTTA
222315284 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
222315299 ATTAAATAATAT
1 ATTAAATAATAT
222315311 ACATGTCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:222315550 original size:24 final size:24
Alignment explanation
Indices: 222315486--222315553 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
222315476 ACTTAAATGG
*
222315486 TAAAACGGACGATAATATTTTTGA
1 TAAAACGGACGATAATATTTGTGA
*
222315510 TAAAATGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTGA
*
222315534 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
222315554 CAATAATAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.03
24 36 0.95
25 1 0.03
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTGA
Found at i:222320399 original size:15 final size:15
Alignment explanation
Indices: 222320381--222320412 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
222320371 AAATAATAAT
*
222320381 TTATATATATTTATC
1 TTATATACATTTATC
222320396 TTATATACATTTATC
1 TTATATACATTTATC
222320411 TT
1 TT
222320413 CTACATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:222320409 original size:25 final size:24
Alignment explanation
Indices: 222320348--222320393 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
222320338 ACCACTTTTC
*
222320348 ATATATATATTTATATATTTTTAAA
1 ATATATA-ATTTATATATATTTAAA
222320373 ATA-ATAATTTATATATATTTA
1 ATATATAATTTATATATATTTA
222320394 TCTTATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 3 0.15
25 3 0.15
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
ATATATAATTTATATATATTTAAA
Found at i:222320855 original size:18 final size:18
Alignment explanation
Indices: 222320832--222320881 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
222320822 TTACACCCTA
222320832 AATATATATTATAA-TCTT
1 AATATATATTATAAGT-TT
*
222320850 AATATATATTAGAAGTTT
1 AATATATATTATAAGTTT
222320868 AATATATATATATA
1 AATATATAT-TATA
222320882 TAACAAGGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (18 bp):
AATATATATTATAAGTTT
Found at i:222321258 original size:40 final size:41
Alignment explanation
Indices: 222321190--222321377 Score: 281
Period size: 40 Copynumber: 4.6 Consensus size: 41
222321180 TTACTTTTTT
*
222321190 GCGGCATTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
*
222321231 GCGGCGTTTTTCC-AAAGCGCCGCTAAAACATAGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
* * *
222321271 GCGGCGTTTTTCC-AAAGCGTCGCTAAAACCTCGGCTTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
* * *
222321311 GCGGCGTTTTACCAAAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
*
222321352 GCGGCGTTTTTCCAAAAGCGTCGCTA
1 GCGGCGTTTTTCCAAAAGCGCCGCTA
222321378 TTGTACAGTT
Statistics
Matches: 134, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 74 0.55
41 60 0.45
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (41 bp):
GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
Found at i:222321338 original size:81 final size:81
Alignment explanation
Indices: 222321190--222321377 Score: 288
Period size: 81 Copynumber: 2.3 Consensus size: 81
222321180 TTACTTTTTT
* * *
222321190 GCGGCATTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATAGCGGCGTTTTTCCAAAGCGCCGCT
1 GCGGCGTTTTTCCAAAAGCGTCGCTAAAACATCGGCCTATAGCGGCGTTTTACCAAAGCGCCGCT
*
222321255 AAAACATAGGCCTATA
66 AAAACATAGACCTATA
* *
222321271 GCGGCGTTTTTCC-AAAGCGTCGCTAAAACCTCGGCTTATAGCGGCGTTTTACCAAAAGCGCCGC
1 GCGGCGTTTTTCCAAAAGCGTCGCTAAAACATCGGCCTATAGCGGCGTTTTACC-AAAGCGCCGC
* *
222321335 TAAAACCTCGACCTATA
65 TAAAACATAGACCTATA
222321352 GCGGCGTTTTTCCAAAAGCGTCGCTA
1 GCGGCGTTTTTCCAAAAGCGTCGCTA
222321378 TTGTACAGTT
Statistics
Matches: 97, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
80 36 0.37
81 49 0.51
82 12 0.12
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (81 bp):
GCGGCGTTTTTCCAAAAGCGTCGCTAAAACATCGGCCTATAGCGGCGTTTTACCAAAGCGCCGCT
AAAACATAGACCTATA
Found at i:222323042 original size:39 final size:39
Alignment explanation
Indices: 222322999--222323150 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
222322989 TATGGTAACC
* * *
222322999 CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
222323038 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
222323077 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA-T
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
222323115 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACA
222323151 CATTCGACAT
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 37 0.35
39 69 0.65
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:222323143 original size:77 final size:78
Alignment explanation
Indices: 222322999--222323148 Score: 266
Period size: 77 Copynumber: 1.9 Consensus size: 78
222322989 TATGGTAACC
222322999 CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
222323064 GGATATCATAGCT
66 GGATATCATAGCT
* * *
222323077 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA-TCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
222323141 GGATATCA
66 GGATATCA
222323149 CACATTCGAC
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
77 35 0.51
78 34 0.49
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (78 bp):
CGCACAAATGCCTTCGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGATATCATAGCT
Found at i:222326155 original size:17 final size:18
Alignment explanation
Indices: 222326113--222326161 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
222326103 AGTTGAAAAG
222326113 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
222326132 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
222326149 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
222326162 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:222327043 original size:40 final size:40
Alignment explanation
Indices: 222326977--222327143 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
222326967 AAATTGAATG
* * *
222326977 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
222327016 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
222327056 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
222327096 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
222327136 ATATCCGG
1 ATATCCGG
222327144 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:222334147 original size:17 final size:18
Alignment explanation
Indices: 222334105--222334153 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
222334095 AGTTGAAAAG
222334105 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
222334124 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
222334141 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
222334154 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:222335038 original size:40 final size:40
Alignment explanation
Indices: 222334972--222335138 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
222334962 AAATTGAATG
* * *
222334972 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
222335011 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
222335051 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
222335091 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
222335131 ATATCCGG
1 ATATCCGG
222335139 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:222339599 original size:28 final size:28
Alignment explanation
Indices: 222339534--222339634 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
222339524 ATAGTGAATC
*
222339534 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
222339563 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
222339591 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
222339621 CGCACACTTAGTGC
1 CGCACACTTAGTGC
222339635 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:222347559 original size:28 final size:28
Alignment explanation
Indices: 222347494--222347594 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
222347484 ATAGTGAATC
*
222347494 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
222347523 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
222347551 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
222347581 CGCACACTTAGTGC
1 CGCACACTTAGTGC
222347595 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:222352394 original size:122 final size:122
Alignment explanation
Indices: 222352176--222352395 Score: 318
Period size: 122 Copynumber: 1.8 Consensus size: 122
222352166 GAATTATGTG
* * * * *
222352176 AAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGGGC
1 AAATGAAATATGAATGTAATGATTATTGATGTATGTGTGCATGAGTAATTGAATGATACCCGGGC
* **
222352241 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGTCCCGAAGACGATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
*
222352298 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAG-AATTGAATGATATCCGG
1 AAATGAAATATGAATG--TAATGATTATTGATGTATGTGTGCATGAGTAATTGAATGATACCCGG
*
222352362 GCTAAGTCCCGAAGAC-ATTATGCTGGAAATTATA
64 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATA
222352396 TCCGGGTTAA
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
122 30 0.35
123 30 0.35
124 26 0.30
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.34
Consensus pattern (122 bp):
AAATGAAATATGAATGTAATGATTATTGATGTATGTGTGCATGAGTAATTGAATGATACCCGGGC
TAAGTCCCGAAGACGATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:222352518 original size:40 final size:40
Alignment explanation
Indices: 222352391--222352520 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
222352381 ATGCTGGAAA
* *
222352391 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
222352431 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
222352471 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
222352511 TTATATCCGG
1 TTATATCCGG
222352521 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:222352519 original size:80 final size:79
Alignment explanation
Indices: 222352354--222352520 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
222352344 GAATTGAATG
* *
222352354 ATATCCGGGCTAAGTCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
222352419 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * ** *
222352433 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
222352497 -ATTCGTGC-ACGTGGTT
64 AATT-GTGCTA-GTGGCT
222352513 ATATCCGG
1 ATATCCGG
222352521 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 29 0.39
80 45 0.61
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:222361172 original size:28 final size:27
Alignment explanation
Indices: 222361109--222361178 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
222361099 ATAGTGAGTC
222361109 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
222361136 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
222361164 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
222361179 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:222367818 original size:29 final size:29
Alignment explanation
Indices: 222367777--222367848 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
222367767 CCCTCGAGCT
* *
222367777 CGCACAC--AGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
222367804 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
222367833 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
222367849 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 6 0.15
29 33 0.85
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:222377075 original size:27 final size:27
Alignment explanation
Indices: 222377041--222377166 Score: 191
Period size: 27 Copynumber: 4.7 Consensus size: 27
222377031 TACCATTGTT
222377041 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
*
222377068 TAAAATTATCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
*
222377095 TAAAATTATCAAAATA-CCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
*
222377121 TAAAATTACCAAAATACCCCTAATTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
* **
222377148 TGAAATTACTGAAATACCC
1 TAAAATTACCAAAATACCC
222377167 TCGACCTGTA
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
26 25 0.27
27 67 0.73
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAGTTTG
Found at i:222377128 original size:53 final size:53
Alignment explanation
Indices: 222377041--222377221 Score: 202
Period size: 53 Copynumber: 3.4 Consensus size: 53
222377031 TACCATTGTT
222377041 TAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATA-CCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTG
* * *
222377095 TAAAATTATCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTG
1 TAAAATTACCAAAATACCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTG
* ** * ** ** * *
222377148 TGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATA-CCCTCGACTTG
1 TAAAATTACCAAAATACCCTAG-TTTGTAAAATTATCAAAATACCCCTAG-TTTG
*
222377202 TAAAATTACCAAAGTACCCT
1 TAAAATTACCAAAATACCCT
222377222 CGATTTAAGA
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 56 0.53
54 49 0.47
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (53 bp):
TAAAATTACCAAAATACCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTG
Found at i:222377137 original size:80 final size:81
Alignment explanation
Indices: 222377041--222377220 Score: 222
Period size: 80 Copynumber: 2.2 Consensus size: 81
222377031 TACCATTGTT
* **
222377041 TAAAATTACCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATACCCCTAG-TTTGTAAAATTAT
1 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACT-AAAATA-CCCTAGACCTGTAAAATTAT
*
222377104 CAAAATACCCTAG-TTTG
64 CAAAATACCCTAGACTTG
* * * **
222377121 TAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTG
1 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTAGACCTGTAAAATTATCA
*
222377186 AAATACCCTCGACTTG
66 AAATACCCTAGACTTG
*
222377202 TAAAATTACCAAAGTACCC
1 TAAAATTACCAAAATACCC
222377221 TCGATTTAAG
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
79 5 0.06
80 59 0.69
81 22 0.26
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTAGACCTGTAAAATTATCA
AAATACCCTAGACTTG
Found at i:222377180 original size:27 final size:27
Alignment explanation
Indices: 222377150--222377224 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
222377140 CTAATTTGTG
222377150 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
222377177 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
222377204 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
222377225 TTTAAGAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:222377263 original size:53 final size:54
Alignment explanation
Indices: 222377216--222377502 Score: 345
Period size: 53 Copynumber: 5.4 Consensus size: 54
222377206 ATTACCAAAG
* * *
222377216 TACCCTCGATTTA-AGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACAGAATTACCATTT
* * *
222377269 TACCCTCGATTTAC-TAATTATCGTTTTA-CCCTCGATTTACAGAATTACC-GTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCT-GATTTACAGAATTACCATTT
* * * *
222377321 TACCCTCGATTTACAGAATTACCATTTTACCCC-GATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACAGAATTACCATTT
*
222377374 TACCCTCGATTTACAGAATTA-CGTTTCA-CCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCT-GATTTACAGAATTACCATTT
* * * * **
222377427 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACAGAATTACCATTT
*
222377481 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
222377503 TAAAATACCC
Statistics
Matches: 200, Mismatches: 25, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
51 3 0.01
52 39 0.19
53 110 0.55
54 45 0.22
55 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCCTGATTTACAGAATTACCATTT
Found at i:222377503 original size:27 final size:27
Alignment explanation
Indices: 222377216--222377502 Score: 388
Period size: 27 Copynumber: 10.8 Consensus size: 27
222377206 ATTACCAAAG
222377216 TACCCTCGATTTA-AGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222377242 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
222377269 TACCCTCGATTTAC-TAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
222377295 TACCCTCGATTTACAGAATTACCG-TT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222377321 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222377348 TACCC-CGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
222377374 TACCCTCGATTTACAGAATTA-CGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222377400 CACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222377427 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
222377454 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222377481 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
222377503 TAAAATACCC
Statistics
Matches: 233, Mismatches: 21, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
25 1 0.00
26 108 0.46
27 123 0.53
28 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:222378765 original size:25 final size:25
Alignment explanation
Indices: 222378736--222378783 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
222378726 TTATAATATG
* * *
222378736 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
222378761 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
222378784 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:222378851 original size:20 final size:20
Alignment explanation
Indices: 222378826--222378884 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
222378816 TAAATATGGT
222378826 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
222378846 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
222378866 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
222378885 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:222378866 original size:11 final size:11
Alignment explanation
Indices: 222378830--222378884 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
222378820 TATGGTATGT
222378830 ATGATATGCAC
1 ATGATATGCAC
* *
222378841 ATGAAATG--T
1 ATGATATGCAC
222378850 ATGATATGCAC
1 ATGATATGCAC
*
222378861 ATGATATG--T
1 ATGATATGCAC
222378870 ATGATATGCAC
1 ATGATATGCAC
222378881 ATGA
1 ATGA
222378885 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:222378965 original size:23 final size:24
Alignment explanation
Indices: 222378935--222379076 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
222378925 GAGGAAGTGA
222378935 AAAAGGGCTTATGCCCCA-TTATC
1 AAAAGGGCTTATGCCCCAGTTATC
222378958 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
222378982 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
222379005 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
222379029 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
222379053 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
222379077 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
23 41 0.37
24 58 0.53
25 11 0.10
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:222379009 original size:47 final size:47
Alignment explanation
Indices: 222378935--222379076 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
222378925 GAGGAAGTGA
222378935 AAAAGGGCTTATGCCCCA-TTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
222378982 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
222379029 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
222379077 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
47 61 0.70
48 15 0.17
49 11 0.13
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:222379303 original size:31 final size:31
Alignment explanation
Indices: 222379268--222379331 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
222379258 CGTTTACAGT
222379268 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
222379299 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
222379330 AA
1 AA
222379332 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:222382130 original size:26 final size:26
Alignment explanation
Indices: 222382101--222382332 Score: 252
Period size: 27 Copynumber: 8.7 Consensus size: 26
222382091 TTTGGTTTAC
222382101 AAAATTACCAAAATACCCT-GCTTTGT
1 AAAATTACCAAAATACCCTAG-TTTGT
*
222382127 AAAATTACTAAAATACCCTAGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGT
222382153 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGT
222382180 AAAATTA-CAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGT
*
222382206 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGT
*
222382233 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGT
* ** * **
222382260 GAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTAG-TTTGT
*** * *
222382287 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTAG-TTTGT
*
222382314 AAAATTACCAAAGTACCCT
1 AAAATTACCAAAATACCCT
222382333 CGATTTATAG
Statistics
Matches: 184, Mismatches: 18, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
26 67 0.36
27 117 0.64
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAGTTTGT
Found at i:222382180 original size:27 final size:27
Alignment explanation
Indices: 222382101--222382277 Score: 263
Period size: 27 Copynumber: 6.7 Consensus size: 27
222382091 TTTGGTTTAC
222382101 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
*
222382127 AAAATTACTAAAATA-CCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
222382153 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
222382180 AAAATTA-CAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
222382206 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
222382233 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
222382260 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
222382278 TCGACCTGTA
Statistics
Matches: 141, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
26 63 0.45
27 78 0.55
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:222382202 original size:53 final size:53
Alignment explanation
Indices: 222382101--222382277 Score: 261
Period size: 53 Copynumber: 3.3 Consensus size: 53
222382091 TTTGGTTTAC
222382101 AAAATTACCAAAATA-CCCT-GCTTTGTAAAATTACTAAAATA-CCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGTAAAATTAC-AAAATACCCCTAGTTTGT
222382153 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACAAAATACCCCTAGTTTGT
* *
222382206 AAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTA-CAAAATACCCCTAGTTTGT
* **
222382260 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
222382278 TCGACCTGTA
Statistics
Matches: 115, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
52 21 0.18
53 61 0.53
54 33 0.29
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTAGTTTGTAAAATTACAAAATACCCCTAGTTTGT
Found at i:222382372 original size:26 final size:27
Alignment explanation
Indices: 222382327--222382608 Score: 368
Period size: 27 Copynumber: 10.8 Consensus size: 27
222382317 ATTACCAAAG
*
222382327 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222382354 TACCCT-AATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222382380 TACCC-CGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
222382406 TACCCTCGATTTACAGAATTA-C--TT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222382430 TACCCTCGATTTAC--AATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222382455 TA-CC-CGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
222382480 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222382507 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222382534 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222382561 TACCCTTGATTTACA-AATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222382587 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
222382609 TAAAATACCC
Statistics
Matches: 228, Mismatches: 17, Indels: 20
0.86 0.06 0.08
Matches are distributed among these distances:
22 5 0.02
23 9 0.04
24 18 0.08
25 15 0.07
26 73 0.32
27 108 0.47
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:222382493 original size:101 final size:105
Alignment explanation
Indices: 222382327--222382608 Score: 407
Period size: 101 Copynumber: 2.7 Consensus size: 105
222382317 ATTACCAAAG
*
222382327 TACCCTCGATTTATAGAATTACCGTTTTACCCTAATTTACATAATTACCGTTTTACCC-CGATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTGATTTACATAATTA-CGTTTTACCCTCGATTT
* *
222382391 ACATAATTATCGTTTTACCCTCGATTTACAGAATTA-C-TT
65 ACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATT
* *
222382430 TACCCTCGA-TT-TACAATTACCATTTTACCC-GATTTACATAATTATCGTTTTACCCTCGATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTGATTTACATAATTA-CGTTTTACCCTCGATTT
*
222382492 ACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
65 ACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCA-TT
*
222382534 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACA-AATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCC-TGATTTACATAATTAC-GTTTTACCCTCGATT
222382598 TACAAAATTAC
64 TACAAAATTAC
222382609 TAAAATACCC
Statistics
Matches: 160, Mismatches: 10, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
100 23 0.14
101 57 0.36
102 3 0.02
103 9 0.06
104 11 0.07
105 2 0.01
106 17 0.11
107 30 0.19
108 8 0.05
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (105 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTGATTTACATAATTACGTTTTACCCTCGATTTA
CAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATT
Found at i:222382635 original size:80 final size:81
Alignment explanation
Indices: 222382327--222382619 Score: 295
Period size: 74 Copynumber: 3.7 Consensus size: 81
222382317 ATTACCAAAG
* * * ****
222382327 TACCCTCGATTTATAGAATTACCGTTTTACCCT-AATTTACATAATTACCGTTTTACCC-CGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
* *
222382390 TACATAATTA-TCGTTT
66 TATAGAATTACT-GTTT
***
222382406 TACCCTCGATTTACAGAATTA-C--TTTACCCTCGATTTAC--AATTACCATTTTA-CC-CGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
* *
222382464 TACATAATTA-TCGTTT
66 TATAGAATTACT-GTTT
* ***
222382480 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
222382545 TATAGAATTACTGTTT
66 TATAGAATTACTGTTT
* * *
222382561 TACCCTTGATTTACA-AATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCT
222382620 TGGTTTGTGA
Statistics
Matches: 193, Mismatches: 12, Indels: 17
0.87 0.05 0.08
Matches are distributed among these distances:
74 44 0.23
75 13 0.07
76 8 0.04
77 22 0.11
78 1 0.01
79 33 0.17
80 40 0.21
81 31 0.16
82 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TATAGAATTACTGTTT
Found at i:222382645 original size:80 final size:81
Alignment explanation
Indices: 222382297--222382652 Score: 241
Period size: 80 Copynumber: 4.5 Consensus size: 81
222382287 AAAATTATTG
* * * * *
222382297 AAATACCCTCGACTTGTAAAATTACC-AAAGTACCCTCGATTTATAGAATTACCGTTTTACCCT-
1 AAATACCCTCGATTTATAGAATTACCGCAA-TACCCTCGATTTACAGAATTACCGTTTTACCCTC
* * *
222382360 AATTTACATAATTACCG
65 GATTTACAAAATTACCA
*** * * * ***
222382377 TTTTACCC-CGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTA-C--TTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
222382438 ATTTAC--AATTACCA
66 ATTTACAAAATTACCA
*** * * * ***
222382452 TTTTA-CC-CGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
*
222382515 ATTTACAGAATTACCA
66 ATTTACAAAATTACCA
*** * *** * *
222382531 TTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACA-AATTACTGTTTTACCCTCG
1 AAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
*
222382595 ATTTACAAAATTACTA
66 ATTTACAAAATTACCA
* * * *
222382611 AAATACCCTTGGTTTGT-GAAATTACCGCAATACCCTCAATTT
1 AAATACCCTCGATTTATAG-AATTACCGCAATACCCTCGATTT
222382653 GTAAAACTAC
Statistics
Matches: 232, Mismatches: 34, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
74 44 0.19
75 13 0.06
76 8 0.03
77 22 0.09
78 1 0.00
79 46 0.20
80 67 0.29
81 31 0.13
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (81 bp):
AAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATTTACAGAATTACCGTTTTACCCTCG
ATTTACAAAATTACCA
Found at i:222383871 original size:25 final size:25
Alignment explanation
Indices: 222383842--222383889 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
222383832 TTATAATATG
* * *
222383842 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
222383867 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
222383890 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:222383970 original size:11 final size:11
Alignment explanation
Indices: 222383937--222383990 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
222383927 TATGGTATGT
222383937 ATGATATGCAC
1 ATGATATGCAC
*
222383948 ATGA-ATG--T
1 ATGATATGCAC
222383956 ATGATATGCAC
1 ATGATATGCAC
*
222383967 ATGATATG--T
1 ATGATATGCAC
222383976 ATGATATGCAC
1 ATGATATGCAC
222383987 ATGA
1 ATGA
222383991 GGTAATCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 4 0.12
9 11 0.32
10 3 0.09
11 16 0.47
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:222383977 original size:20 final size:20
Alignment explanation
Indices: 222383932--222383990 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
222383922 ATAAATATGG
222383932 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
222383952 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
222383971 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
222383991 GGTAATCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:222384068 original size:24 final size:24
Alignment explanation
Indices: 222384041--222384183 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
222384031 GAGGAAGTGA
222384041 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
222384065 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
222384089 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
222384112 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
222384136 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
222384160 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
222384184 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:222384134 original size:47 final size:47
Alignment explanation
Indices: 222384041--222384183 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
222384031 GAGGAAGTGA
222384041 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
222384089 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
222384136 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
222384184 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:222384157 original size:71 final size:72
Alignment explanation
Indices: 222384041--222384184 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
222384031 GAGGAAGTGA
*
222384041 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
222384104 CCAGTTAT
65 CCAGTTAT
** * *
222384112 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
222384177 CAGTTAT
66 CAGTTAT
222384184 A
1 A
222384185 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:222384410 original size:31 final size:31
Alignment explanation
Indices: 222384375--222384438 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
222384365 CGTTTACAGT
222384375 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
222384406 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
222384437 AA
1 AA
222384439 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:222387239 original size:26 final size:26
Alignment explanation
Indices: 222387207--222387433 Score: 230
Period size: 27 Copynumber: 8.7 Consensus size: 26
222387197 TTTGGTTTAC
222387207 AAATTACCAAAATACCCT-GCTTTGTA
1 AAATTACCAAAATACCCTAG-TTTGTA
*
222387233 AAATTA-CTAAATA-CC-AGTTTGTA
1 AAATTACCAAAATACCCTAGTTTGTA
222387256 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATA-CCCTAGTTTGTA
222387283 AAATTA-CAAAATACCCTAGTTTGTA
1 AAATTACCAAAATACCCTAGTTTGTA
*
222387308 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATA-CCCTAGTTTGTA
* *
222387335 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATA-CCCTAGTTTGTA
** * **
222387362 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTAG-TTTGTA
*** * *
222387389 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTAG-TTTGTA
*
222387416 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
222387434 CGATTTATAG
Statistics
Matches: 175, Mismatches: 18, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
23 12 0.07
24 9 0.05
25 24 0.14
26 26 0.15
27 104 0.59
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (26 bp):
AAATTACCAAAATACCCTAGTTTGTA
Found at i:222387432 original size:81 final size:79
Alignment explanation
Indices: 222387207--222387432 Score: 239
Period size: 79 Copynumber: 2.9 Consensus size: 79
222387197 TTTGGTTTAC
* * *
222387207 AAATTACCAAAATACCCT-GCTTTGTAAAATTA-CTAAATA--CC-AGTTTGTAAAATTACCAAA
1 AAATTA-CAAAATACCCTAGC-CTGTAAAATTATCAAAATACCCCGAGCTTGTAAAATTACCAAA
*
222387267 ATACCCCTAGTTTGTA
64 ATACCCCTAATTTGTA
** * *
222387283 AAATTACAAAATACCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAAT
1 AAATTACAAAATACCCTAGCCTGTAAAATTATCAAAATACCCCGAGCTTGTAAAATTACCAAAAT
*
222387348 ACCCCTAATTTGTG
66 ACCCCTAATTTGTA
* * **
222387362 AAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGA-CTTGTAAAATTACCAA
1 AAATTAC-AAAATACCCTAG-CCTGTAAAATTATCAAAATACCC-CGAGCTTGTAAAATTACCAA
*
222387426 AGTACCC
63 AATACCC
222387433 TCGATTTATA
Statistics
Matches: 129, Mismatches: 13, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
75 22 0.17
76 13 0.10
78 2 0.02
79 40 0.31
80 10 0.08
81 40 0.31
82 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (79 bp):
AAATTACAAAATACCCTAGCCTGTAAAATTATCAAAATACCCCGAGCTTGTAAAATTACCAAAAT
ACCCCTAATTTGTA
Found at i:222387480 original size:26 final size:27
Alignment explanation
Indices: 222387428--222387713 Score: 422
Period size: 27 Copynumber: 10.8 Consensus size: 27
222387418 ATTACCAAAG
*
222387428 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
222387455 TACCCTCGATTTACA-AATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222387481 TACCCTCGATTTACATAATTA-CGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222387507 TACCCTCGATTTACAGAATTACTG-TT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222387533 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222387560 TACCCTCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
222387587 TACCCTCGATTTACAGAATTA-CG-TT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222387612 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222387639 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222387666 TACCCTTGATTTACA-AATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222387692 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
222387714 TAAAATACCC
Statistics
Matches: 237, Mismatches: 16, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
25 23 0.10
26 103 0.43
27 111 0.47
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:222387528 original size:79 final size:79
Alignment explanation
Indices: 222387428--222387713 Score: 443
Period size: 79 Copynumber: 3.6 Consensus size: 79
222387418 ATTACCAAAG
* *
222387428 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACA-AATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCG-TTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
222387492 TACATAATTACGTTT
65 TACATAATTACGTTT
*
222387507 TACCCTCGATTTACAGAATTACTGTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
1 TACCCTCGATTTACAGAATTACCGTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
222387572 ACATAATTATCGTTT
66 ACATAATTA-CGTTT
222387587 TACCCTCGATTTACAGAATTA-CGTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
1 TACCCTCGATTTACAGAATTACCGTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
* *
222387651 ATAGAATTACTGTTT
66 ACATAATTAC-GTTT
* * *
222387666 TACCCTTGATTTACA-AATTACTGTTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTACCG-TTTACCCTCGATTTACAGAATTAC
222387714 TAAAATACCC
Statistics
Matches: 193, Mismatches: 9, Indels: 9
0.91 0.04 0.04
Matches are distributed among these distances:
78 23 0.12
79 121 0.63
80 49 0.25
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (79 bp):
TACCCTCGATTTACAGAATTACCGTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTT
ACATAATTACGTTT
Found at i:222387722 original size:27 final size:27
Alignment explanation
Indices: 222387362--222387724 Score: 174
Period size: 27 Copynumber: 13.7 Consensus size: 27
222387352 CTAATTTGTG
** **
222387362 AAATTACTGAAA-TACCCTCGACCTGTA
1 AAATTACT-AAATTACCCTCGATTTACA
* * **
222387389 AAATTATTGAAA-TACCCTCGACTTGTA
1 AAATTACT-AAATTACCCTCGATTTACA
* * *
222387416 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACTAAATTACCCTCGATTTACA
* ****
222387443 GAATTACCGTTTTACCCTCGATTTAC-
1 AAATTACTAAATTACCCTCGATTTACA
****
222387469 AAATTACCGTTTTACCCTCGATTTACA
1 AAATTACTAAATTACCCTCGATTTACA
* *
222387496 TAATTACGT--TTTACCCTCGATTTACA
1 AAATTAC-TAAATTACCCTCGATTTACA
* **
222387522 GAATTACT-GTTTACCCTCGATTTACA
1 AAATTACTAAATTACCCTCGATTTACA
* * **
222387548 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACTAAATTACCCTCGATTTACA
* *
222387575 TAATTATCGT--TTTACCCTCGATTTACA
1 AAATTA-C-TAAATTACCCTCGATTTACA
*
222387602 GAATTACGT---TTACCCTCGATTTACA
1 AAATTAC-TAAATTACCCTCGATTTACA
* * ** *
222387627 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACTAAATTACCCTCGATTTACA
* *** *
222387654 GAATTACTGTTTTACCCTTGATTTAC-
1 AAATTACTAAATTACCCTCGATTTACA
***
222387680 AAATTACTGTTTTACCCTCGATTTACA
1 AAATTACTAAATTACCCTCGATTTACA
*
222387707 AAATTACTAAAATACCCT
1 AAATTACTAAATTACCCT
222387725 TGGTTTGTGA
Statistics
Matches: 292, Mismatches: 33, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
25 24 0.08
26 102 0.35
27 165 0.57
28 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (27 bp):
AAATTACTAAATTACCCTCGATTTACA
Found at i:222388977 original size:25 final size:25
Alignment explanation
Indices: 222388948--222388995 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
222388938 TTATAATATG
* * *
222388948 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
222388973 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
222388996 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:222389064 original size:20 final size:20
Alignment explanation
Indices: 222389039--222389097 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
222389029 TAAATATGGT
222389039 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
222389059 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
222389079 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
222389098 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:222389079 original size:11 final size:11
Alignment explanation
Indices: 222389043--222389097 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
222389033 TATGGTATGT
222389043 ATGATATGCAC
1 ATGATATGCAC
* *
222389054 ATGAAATG--T
1 ATGATATGCAC
222389063 ATGATATGCAC
1 ATGATATGCAC
*
222389074 ATGATATG--T
1 ATGATATGCAC
222389083 ATGATATGCAC
1 ATGATATGCAC
222389094 ATGA
1 ATGA
222389098 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:222389175 original size:24 final size:24
Alignment explanation
Indices: 222389148--222389290 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
222389138 GAGGAAGTGA
222389148 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
222389172 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
222389196 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
222389219 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
222389243 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
222389267 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
222389291 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:222389241 original size:47 final size:47
Alignment explanation
Indices: 222389148--222389290 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
222389138 GAGGAAGTGA
222389148 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
222389196 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
222389243 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
222389291 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:222389264 original size:71 final size:72
Alignment explanation
Indices: 222389148--222389291 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
222389138 GAGGAAGTGA
*
222389148 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
222389211 CCAGTTAT
65 CCAGTTAT
** * *
222389219 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
222389284 CAGTTAT
66 CAGTTAT
222389291 A
1 A
222389292 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:222389517 original size:31 final size:31
Alignment explanation
Indices: 222389482--222389545 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
222389472 CGTTTACAGT
222389482 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
222389513 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
222389544 AA
1 AA
222389546 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:222392345 original size:26 final size:26
Alignment explanation
Indices: 222392309--222392530 Score: 167
Period size: 27 Copynumber: 8.7 Consensus size: 26
222392299 TTTGGTTTAC
222392309 AATTACCAAAATACCCT-GCTTTGTAA
1 AATTACCAAAATACCCTAG-TTTGTAA
* *
222392335 AATTA-CTAAA-A-CCT-GTTTATAA
1 AATTACCAAAATACCCTAGTTTGTAA
222392357 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
222392384 AATTA-CAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
*
222392410 AATTATC----TACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
* *
222392433 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATA-CCCTAGTTTGTAA
** * **
222392460 AATTACTGAAATACCCTCGACCTGTAA
1 AATTACCAAAATACCCTAG-TTTGTAA
*** * *
222392487 AATTATTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTAG-TTTGTAA
*
222392514 AATTACCAAAGTACCCT
1 AATTACCAAAATACCCT
222392531 CGATTTATAG
Statistics
Matches: 165, Mismatches: 20, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
22 11 0.07
23 30 0.18
24 2 0.01
25 4 0.02
26 38 0.23
27 80 0.48
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:222392357 original size:22 final size:23
Alignment explanation
Indices: 222392309--222392367 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 23
222392299 TTTGGTTTAC
*
222392309 AATTACCAAAATACCCTGCTTTGTAA
1 AATTACC-AAA-A-CCTGCTTTATAA
*
222392335 AATTACTAAAACCTG-TTTATAA
1 AATTACCAAAACCTGCTTTATAA
222392357 AATTACCAAAA
1 AATTACCAAAA
222392368 TACCCCTAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 16 0.53
23 4 0.13
24 1 0.03
25 3 0.10
26 6 0.20
ACGTcount: A:0.46, C:0.19, G:0.05, T:0.31
Consensus pattern (23 bp):
AATTACCAAAACCTGCTTTATAA
Found at i:222392387 original size:27 final size:27
Alignment explanation
Indices: 222392309--222392475 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
222392299 TTTGGTTTAC
222392309 AATTACCAAAATA-CCCT-GCTTTGTAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
* *
222392335 AATTA-CTAAA-A--CCT-GTTTATAA
1 AATTACCAAAATACCCCTAGTTTGTAA
222392357 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
222392384 AATTA-CAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
222392410 AATTATC----TACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
222392433 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
**
222392460 AATTACTGAAATACCC
1 AATTACCAAAATACCC
222392476 TCGACCTGTA
Statistics
Matches: 122, Mismatches: 9, Indels: 19
0.81 0.06 0.13
Matches are distributed among these distances:
22 11 0.09
23 30 0.25
24 2 0.02
25 4 0.03
26 34 0.28
27 41 0.34
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:222392421 original size:49 final size:50
Alignment explanation
Indices: 222392368--222392464 Score: 169
Period size: 50 Copynumber: 2.0 Consensus size: 50
222392358 ATTACCAAAA
*
222392368 TACCCCTAGTTTGTAAAATTA-CAAAATACCCCTAGTTTGTAAAATTATC
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATC
*
222392417 TACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTA
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTA
222392465 CTGAAATACC
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 21 0.47
50 24 0.53
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (50 bp):
TACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTATC
Found at i:222392424 original size:23 final size:23
Alignment explanation
Indices: 222392367--222392465 Score: 101
Period size: 26 Copynumber: 4.0 Consensus size: 23
222392357 AATTACCAAA
222392367 ATACCCCTAGTTTGTAAAATTAC
1 ATACCCCTAGTTTGTAAAATTAC
222392390 AAAATACCCCTAGTTTGTAAAATTATC
1 ---ATACCCCTAGTTTGTAAAATTA-C
222392417 -TACCCCTAGTTTGTAAAATTACC
1 ATACCCCTAGTTTGTAAAATTA-C
* *
222392440 AAAATACCCCTAATTTGTGAAATTAC
1 ---ATACCCCTAGTTTGTAAAATTAC
222392466 TGAAATACCC
Statistics
Matches: 65, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
23 22 0.34
26 23 0.35
27 20 0.31
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.33
Consensus pattern (23 bp):
ATACCCCTAGTTTGTAAAATTAC
Found at i:222392447 original size:76 final size:75
Alignment explanation
Indices: 222392309--222392475 Score: 214
Period size: 76 Copynumber: 2.2 Consensus size: 75
222392299 TTTGGTTTAC
222392309 AATTACCAAAATA-CCCTGCTTTGTAAAATTACTAAAACCTGTTTATAAAATTACCAAAATACCC
1 AATTA-CAAAATACCCCTGCTTTGTAAAATTACTAAAACCTGTTTATAAAATTACCAAAATACCC
*
222392373 CTAGTTTGTAA
65 CTAATTTGTAA
** *
222392384 AATTACAAAATACCCCTAG-TTTGTAAAATTATCT-ACCCCTAGTTTGTAAAATTACCAAAATAC
1 AATTACAAAATACCCCT-GCTTTGTAAAATTA-CTAAAACCT-GTTTATAAAATTACCAAAATAC
*
222392447 CCCTAATTTGTGA
63 CCCTAATTTGTAA
*
222392460 AATTACTGAAATACCC
1 AATTAC-AAAATACCC
222392476 TCGACCTGTA
Statistics
Matches: 81, Mismatches: 6, Indels: 8
0.85 0.06 0.08
Matches are distributed among these distances:
74 7 0.09
75 25 0.31
76 41 0.51
77 8 0.10
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (75 bp):
AATTACAAAATACCCCTGCTTTGTAAAATTACTAAAACCTGTTTATAAAATTACCAAAATACCCC
TAATTTGTAA
Found at i:222392811 original size:27 final size:27
Alignment explanation
Indices: 222392525--222392810 Score: 413
Period size: 27 Copynumber: 10.8 Consensus size: 27
222392515 ATTACCAAAG
*
222392525 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
222392552 TACCCT--ATTTACA-AATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222392576 TACCC-CGATTTACATAATTA-CGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222392601 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222392628 TA-CCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222392654 TACCCTCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
222392681 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222392708 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222392735 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
222392762 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222392789 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
222392811 TAAAATACCC
Statistics
Matches: 235, Mismatches: 18, Indels: 12
0.89 0.07 0.05
Matches are distributed among these distances:
24 16 0.07
25 23 0.10
26 43 0.18
27 153 0.65
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:222394072 original size:25 final size:25
Alignment explanation
Indices: 222394043--222394090 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
222394033 TTATAATATG
* * *
222394043 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
222394068 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
222394091 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:222394171 original size:11 final size:11
Alignment explanation
Indices: 222394138--222394191 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
222394128 TATGGTATGT
222394138 ATGATATGCAC
1 ATGATATGCAC
*
222394149 ATGA-ATG--T
1 ATGATATGCAC
222394157 ATGATATGCAC
1 ATGATATGCAC
*
222394168 ATGATATG--T
1 ATGATATGCAC
222394177 ATGATATGCAC
1 ATGATATGCAC
222394188 ATGA
1 ATGA
222394192 GGTAATCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 4 0.12
9 11 0.32
10 3 0.09
11 16 0.47
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:222394178 original size:20 final size:20
Alignment explanation
Indices: 222394133--222394191 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
222394123 ATAAATATGG
222394133 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
222394153 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
222394172 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
222394192 GGTAATCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:222394269 original size:24 final size:24
Alignment explanation
Indices: 222394242--222394384 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
222394232 GAGGAAGTGA
222394242 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
222394266 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
222394290 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
222394313 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
222394337 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
222394361 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
222394385 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:222394335 original size:47 final size:47
Alignment explanation
Indices: 222394242--222394384 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
222394232 GAGGAAGTGA
222394242 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
222394290 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
222394337 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
222394385 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:222394358 original size:71 final size:72
Alignment explanation
Indices: 222394242--222394385 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
222394232 GAGGAAGTGA
*
222394242 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
222394305 CCAGTTAT
65 CCAGTTAT
** * *
222394313 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
222394378 CAGTTAT
66 CAGTTAT
222394385 A
1 A
222394386 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:222394611 original size:31 final size:31
Alignment explanation
Indices: 222394576--222394639 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
222394566 CGTTTACAGT
222394576 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
222394607 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
222394638 AA
1 AA
222394640 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:222397544 original size:28 final size:26
Alignment explanation
Indices: 222397469--222397551 Score: 116
Period size: 26 Copynumber: 3.2 Consensus size: 26
222397459 AATTACCATA
222397469 CCCTAGTTTTGT-AAATTACAAAAAC
1 CCCTAGTTTTGTAAAATTACAAAAAC
*
222397494 CCCTAG-TTTGTAAATTTATCAAAATAC
1 CCCTAGTTTTGTAAAATTA-CAAAA-AC
*
222397521 CCCTAGTTTTGTAAAATTACCAAAAC
1 CCCTAGTTTTGTAAAATTACAAAAAC
222397547 CCCTA
1 CCCTA
222397552 ATTTGTGAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.10
25 11 0.22
26 12 0.24
27 12 0.24
28 11 0.22
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
CCCTAGTTTTGTAAAATTACAAAAAC
Found at i:222397586 original size:24 final size:25
Alignment explanation
Indices: 222397559--222397627 Score: 79
Period size: 24 Copynumber: 2.8 Consensus size: 25
222397549 CTAATTTGTG
222397559 AATTATGAAATACCCTCGACCTGT-
1 AATTATGAAATACCCTCGACCTGTA
*
222397583 AATTATTG-AATACCCTCGACTTGTA
1 AATTA-TGAAATACCCTCGACCTGTA
**
222397608 AATTACCAAAGTACCCTCGA
1 AATTATGAAA-TACCCTCGA
222397628 TTTATAGAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
24 20 0.53
25 9 0.24
26 9 0.24
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.29
Consensus pattern (25 bp):
AATTATGAAATACCCTCGACCTGTA
Found at i:222397649 original size:27 final size:27
Alignment explanation
Indices: 222397619--222397908 Score: 326
Period size: 26 Copynumber: 10.8 Consensus size: 27
222397609 ATTACCAAAG
*
222397619 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222397646 TACCC-CTAATTT-CATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
222397672 TACCC-CGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222397698 TAAACCCTCGATTTACAGAATTACTGTTT
1 T--ACCCTCGATTTACAGAATTACCGTTT
* *
222397727 CACACCTCGATTTACAGAATTACCATTT
1 TAC-CCTCGATTTACAGAATTACCGTTT
* *
222397755 TACCC-CGATTTACATAATTATTCGTTT
1 TACCCTCGATTTACAGAATTA-CCGTTT
222397782 TACCCTCGATTTACA-AATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
222397808 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
222397835 TACCCTCGATTTATAG-ATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
222397861 TACCCTTGATTTGCA-AATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
222397887 TAACCCTCGATTTACA-AATTAC
1 T-ACCCTCGATTTACAGAATTAC
222397909 TAAAATACCC
Statistics
Matches: 227, Mismatches: 25, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
25 4 0.02
26 98 0.43
27 70 0.31
28 37 0.16
29 18 0.08
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:222397909 original size:53 final size:54
Alignment explanation
Indices: 222397619--222397908 Score: 326
Period size: 53 Copynumber: 5.4 Consensus size: 54
222397609 ATTACCAAAG
* * * *
222397619 TACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATTT-CATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTC-GATTTACAGAATTACTGTTT
* *
222397672 TACCC-CGATTTACATAATTATCGTTTTAAACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTT--ACCCTCGATTTACAGAATTACTGTTT
* * * *
222397727 CACACCTCGATTTACAGAATTACCATTTTACCC-CGATTTACATAATTATTCGTTT
1 TAC-CCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACT-GTTT
**
222397782 TACCCTCGATTTACA-AATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
222397835 TACCCTCGATTTATAG-ATTACTGTTTTACCCTTGATTTGCA-AATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
222397887 TAACCCTCGATTTACA-AATTAC
1 T-ACCCTCGATTTACAGAATTAC
222397909 TAAAATACCC
Statistics
Matches: 201, Mismatches: 25, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
52 29 0.14
53 77 0.38
54 49 0.24
55 25 0.12
56 2 0.01
57 19 0.09
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:222399173 original size:25 final size:24
Alignment explanation
Indices: 222399141--222399187 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
222399131 TTATAATATG
* * *
222399141 AAAAGACCGTTTTGCCCCTAGGTA
1 AAAAGACCATTATACCCCTAGGTA
222399165 AAAATGACCATTATACCCCTAGG
1 AAAA-GACCATTATACCCCTAGG
222399188 GTTTATGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 4 0.21
25 15 0.79
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (24 bp):
AAAAGACCATTATACCCCTAGGTA
Found at i:222399277 original size:21 final size:21
Alignment explanation
Indices: 222399230--222399290 Score: 115
Period size: 20 Copynumber: 3.0 Consensus size: 21
222399220 ATAAATATGG
222399230 TATGTATGATATGCACATGAA
1 TATGTATGATATGCACATGAA
222399251 -ATGTATGATATGCACATGAA
1 TATGTATGATATGCACATGAA
222399271 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
222399291 GGTAATCATA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
20 20 0.51
21 19 0.49
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (21 bp):
TATGTATGATATGCACATGAA
Found at i:222399423 original size:23 final size:23
Alignment explanation
Indices: 222399344--222399487 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 23
222399334 AAGGAAGTGA
222399344 AAAAGGGGCTTATGCCCCAGTTAT
1 AAAA-GGGCTTATGCCCCAGTTAT
222399368 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
222399392 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
222399416 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
222399439 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
222399463 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
222399487 A
1 A
222399488 TGATAAGCAG
Statistics
Matches: 111, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 43 0.39
24 54 0.49
25 14 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:222399431 original size:71 final size:72
Alignment explanation
Indices: 222399344--222399487 Score: 213
Period size: 70 Copynumber: 2.0 Consensus size: 72
222399334 AAGGAAGTGA
*
222399344 AAAAGGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC
1 AAAAGGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCC
222399408 -CCAGTTAT
64 TCCAGTTAT
* * *
222399416 AAAA-GGGCTTATGCCCCAGTTATGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
222399480 CAGTTAT
66 CAGTTAT
222399487 A
1 A
222399488 TGATAAGCAG
Statistics
Matches: 66, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
70 31 0.47
71 31 0.47
72 4 0.06
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (72 bp):
AAAAGGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:222399710 original size:31 final size:31
Alignment explanation
Indices: 222399675--222399734 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
222399665 CGTTTACAGT
222399675 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
222399706 AAAGGCTTCGGCCCAGTATTATGAAATAT
1 AAAGGCTTCGGCCCAGTAATATGAAATAT
222399735 TAAATATGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:222402960 original size:69 final size:71
Alignment explanation
Indices: 222402879--222403040 Score: 310
Period size: 69 Copynumber: 2.3 Consensus size: 71
222402869 CGATTTGTCT
222402879 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCG-CC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
222402942 CTTTCA
66 CTTTCA
222402948 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
222403013 CTTTCA
66 CTTTCA
222403019 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
222403041 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 49 0.54
70 2 0.02
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:222403078 original size:71 final size:70
Alignment explanation
Indices: 222402879--222403074 Score: 240
Period size: 69 Copynumber: 2.8 Consensus size: 70
222402869 CGATTTGTCT
* * * *
222402879 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCG-CC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
222402942 CTTTCA
65 CTTTCA
* * * *
222402948 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
222403013 CTTTCA
65 CTTTCA
* *
222403019 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
222403075 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 50 0.42
70 3 0.03
71 43 0.36
ACGTcount: A:0.20, C:0.29, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:222406661 original size:40 final size:39
Alignment explanation
Indices: 222406597--222406746 Score: 183
Period size: 39 Copynumber: 3.8 Consensus size: 39
222406587 GCTACTCGTT
* * * *** *
222406597 CAAACGCCTTCGGGACATAGCCCGGTTATGGGAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
*
222406637 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
* *
222406677 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
*
222406716 CAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CAAATGCCTTCGGGCTTAGCCCGGATATCAC
222406747 TCGAACATTC
Statistics
Matches: 98, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 53 0.54
40 45 0.46
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
Found at i:222406712 original size:39 final size:39
Alignment explanation
Indices: 222406633--222406746 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
222406623 TATGGGAACC
* *
222406633 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
222406673 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
222406712 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
222406747 TCGAACATTC
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
39 53 0.76
40 17 0.24
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:222413716 original size:71 final size:71
Alignment explanation
Indices: 222413630--222413793 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
222413620 CGATTTGTCT
222413630 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
222413695 CTTTCA
66 CTTTCA
222413701 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
222413766 CTTTCA
66 CTTTCA
222413772 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
222413794 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:222413831 original size:71 final size:70
Alignment explanation
Indices: 222413630--222413827 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
222413620 CGATTTGTCT
* * * *
222413630 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
222413695 CTTTCA
65 CTTTCA
* * * *
222413701 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
222413766 CTTTCA
65 CTTTCA
* *
222413772 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
222413828 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:222417418 original size:40 final size:39
Alignment explanation
Indices: 222417354--222417503 Score: 183
Period size: 39 Copynumber: 3.8 Consensus size: 39
222417344 GCTACTCGTT
* * * *** *
222417354 CAAACGCCTTCGGGACATAGCCCGGTTATGGGAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
*
222417394 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
* *
222417434 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
*
222417473 CAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CAAATGCCTTCGGGCTTAGCCCGGATATCAC
222417504 TCGAACATTC
Statistics
Matches: 98, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 53 0.54
40 45 0.46
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
Found at i:222417469 original size:39 final size:39
Alignment explanation
Indices: 222417390--222417503 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
222417380 TATGGGAACC
* *
222417390 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
222417430 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
222417469 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
222417504 TCGAACATTC
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
39 53 0.76
40 17 0.24
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:222424463 original size:71 final size:71
Alignment explanation
Indices: 222424377--222424540 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
222424367 CGATTTGTCT
222424377 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
222424442 CTTTCA
66 CTTTCA
222424448 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
222424513 CTTTCA
66 CTTTCA
222424519 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
222424541 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:222424578 original size:71 final size:70
Alignment explanation
Indices: 222424377--222424574 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
222424367 CGATTTGTCT
* * * *
222424377 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
222424442 CTTTCA
65 CTTTCA
* * * *
222424448 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
222424513 CTTTCA
65 CTTTCA
* *
222424519 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
222424575 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:222428037 original size:27 final size:27
Alignment explanation
Indices: 222428007--222428075 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 27
222427997 ATAATAAGTC
*
222428007 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
222428034 CGCACACATAGTGCTATATAATCAATT
1 CGCACACTTAGTGCTATATAATCAACT
222428061 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
222428076 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:222435968 original size:27 final size:28
Alignment explanation
Indices: 222435938--222436007 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
222435928 ATAATAAGTC
*
222435938 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
222435965 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
222435993 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
222436008 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:222441473 original size:41 final size:41
Alignment explanation
Indices: 222441428--222441545 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
222441418 TGAAAGATAA
222441428 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
222441469 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222441499 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222441540 ATGTAG
1 ATGTAG
222441546 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:222441484 original size:71 final size:71
Alignment explanation
Indices: 222441396--222441559 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
222441386 GAGATGTATC
222441396 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222441461 AGGACA
66 AGGACA
222441467 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222441532 AGGACA
66 AGGACA
222441538 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
222441560 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:222449051 original size:41 final size:41
Alignment explanation
Indices: 222449006--222449123 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
222448996 TGAAAGATAA
222449006 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
222449047 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222449077 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
222449118 ATGTAG
1 ATGTAG
222449124 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:222449062 original size:71 final size:71
Alignment explanation
Indices: 222448974--222449137 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
222448964 GAGATGTATC
222448974 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222449039 AGGACA
66 AGGACA
222449045 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
222449110 AGGACA
66 AGGACA
222449116 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
222449138 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:222453293 original size:40 final size:39
Alignment explanation
Indices: 222453248--222453377 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
222453238 CGGAATATAA
222453248 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
222453288 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
222453328 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
222453368 CCGGATATAA
1 CCGGATATAA
222453378 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:222453392 original size:40 final size:40
Alignment explanation
Indices: 222453264--222453414 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
222453254 ATAACCATGT
* * *
222453264 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
222453304 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
222453344 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
222453384 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
222453415 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:222453398 original size:80 final size:79
Alignment explanation
Indices: 222453264--222453412 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
222453254 ATAACCATGT
* *
222453264 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
222453329 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
222453344 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
222453407 CCGGAT
64 CCGGAT
222453413 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:222461292 original size:40 final size:39
Alignment explanation
Indices: 222461247--222461376 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
222461237 CGGAATATAA
222461247 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
222461287 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
222461327 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
222461367 CCGGATATAA
1 CCGGATATAA
222461377 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:222461391 original size:40 final size:40
Alignment explanation
Indices: 222461263--222461414 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
222461253 ATAACCATGT
* * *
222461263 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
222461303 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
222461343 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
222461383 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
222461415 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:222461397 original size:80 final size:80
Alignment explanation
Indices: 222461263--222461412 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
222461253 ATAACCATGT
*
222461263 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
222461327 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
222461343 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
222461406 CCCGGAT
64 CCCGGAT
222461413 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Done.