Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 711 of 770
Found at i:224637208 original size:12 final size:12
Alignment explanation
Indices: 224637191--224637222 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
224637181 CAGCCCGCCC
224637191 ATATTAATTTTT
1 ATATTAATTTTT
224637203 ATATT-ATTTTT
1 ATATTAATTTTT
224637214 ATA-TAATTT
1 ATATTAATTT
224637223 AAAATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:224637382 original size:30 final size:30
Alignment explanation
Indices: 224637346--224637408 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
224637336 ACTTAACAAT
224637346 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
224637376 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
224637406 CAA
1 CAA
224637409 TAAAATAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:224637480 original size:11 final size:11
Alignment explanation
Indices: 224637446--224637485 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
224637436 CAATAACAAC
*
224637446 AAAATAGTAGC
1 AAAATAGTAGT
* *
224637457 AACATAATAGT
1 AAAATAGTAGT
224637468 AAAATAGTAGT
1 AAAATAGTAGT
224637479 AAAATAG
1 AAAATAG
224637486 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (11 bp):
AAAATAGTAGT
Found at i:224637595 original size:12 final size:12
Alignment explanation
Indices: 224637578--224637604 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
224637568 GGCCAAAAAT
224637578 GCCTTACCCGAG
1 GCCTTACCCGAG
224637590 GCCTTACCCGAG
1 GCCTTACCCGAG
224637602 GCC
1 GCC
224637605 CGGCCTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.44, G:0.26, T:0.15
Consensus pattern (12 bp):
GCCTTACCCGAG
Found at i:224641223 original size:40 final size:40
Alignment explanation
Indices: 224641144--224641320 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
224641134 CGGATGATAA
* * * *
224641144 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
224641184 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
224641224 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
224641264 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
224641304 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
224641321 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.12
40 102 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:224644079 original size:15 final size:15
Alignment explanation
Indices: 224644059--224644092 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
224644049 CGCACGCGAG
224644059 GATGCTTCCTCGCCA
1 GATGCTTCCTCGCCA
*
224644074 GATGCTTCCTTGCCA
1 GATGCTTCCTCGCCA
224644089 GATG
1 GATG
224644093 TTATTACCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.32, G:0.24, T:0.29
Consensus pattern (15 bp):
GATGCTTCCTCGCCA
Found at i:224648742 original size:40 final size:40
Alignment explanation
Indices: 224648683--224648890 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
224648673 CAATTGAATG
* * * *
224648683 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
224648723 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
224648763 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
224648803 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
224648843 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
224648883 ATATCCGG
1 ATATCCGG
224648891 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:224648821 original size:80 final size:80
Alignment explanation
Indices: 224648685--224648890 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
224648675 ATTGAATGAT
* * ** * * *
224648685 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
224648749 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
224648765 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
224648830 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
224648845 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
224648891 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:224656785 original size:40 final size:40
Alignment explanation
Indices: 224656726--224656933 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
224656716 CAATTGAATG
* * * *
224656726 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
224656766 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
224656806 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
224656846 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
224656886 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
224656926 ATATCCGG
1 ATATCCGG
224656934 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:224656864 original size:80 final size:80
Alignment explanation
Indices: 224656728--224656933 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
224656718 ATTGAATGAT
* * ** * * *
224656728 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
224656792 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
224656808 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
224656873 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
224656888 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
224656934 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:224665581 original size:17 final size:18
Alignment explanation
Indices: 224665539--224665587 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
224665529 AGTTGAAAAG
224665539 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
224665558 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
224665575 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
224665588 GCTTTTGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:224672792 original size:17 final size:18
Alignment explanation
Indices: 224672750--224672798 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
224672740 AGTTGAAAAG
224672750 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
224672769 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
224672786 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
224672799 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:224680021 original size:17 final size:18
Alignment explanation
Indices: 224679979--224680027 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
224679969 AGTTGAAAAG
224679979 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
224679998 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
224680015 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
224680028 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:224680915 original size:40 final size:40
Alignment explanation
Indices: 224680849--224681015 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
224680839 AAATTGAATG
* * *
224680849 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
224680888 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
224680928 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
224680968 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
224681008 ATATCCGG
1 ATATCCGG
224681016 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:224690823 original size:28 final size:28
Alignment explanation
Indices: 224690792--224690883 Score: 152
Period size: 28 Copynumber: 3.3 Consensus size: 28
224690782 GATTACTAGA
*
224690792 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
224690820 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
224690848 ATA-CCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
224690875 ATACCCCTA
1 ATACCCCTA
224690884 GGGTTAATTT
Statistics
Matches: 61, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
27 28 0.46
28 33 0.54
ACGTcount: A:0.34, C:0.28, G:0.09, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:224690862 original size:27 final size:27
Alignment explanation
Indices: 224690796--224690880 Score: 136
Period size: 27 Copynumber: 3.1 Consensus size: 27
224690786 ACTAGAATAC
*
224690796 CCCTATGTATGCAAAATTACCAT-TATA
1 CCCTATGTATGCAAAATGACC-TCTATA
224690823 CCCCTATGTATGCAAAATGACCTCTATA
1 -CCCTATGTATGCAAAATGACCTCTATA
224690851 CCCTATGTATGCAAAATGACCTCTATA
1 CCCTATGTATGCAAAATGACCTCTATA
224690878 CCC
1 CCC
224690881 CTAGGGTTAA
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
27 31 0.56
28 24 0.44
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.29
Consensus pattern (27 bp):
CCCTATGTATGCAAAATGACCTCTATA
Found at i:224691088 original size:28 final size:27
Alignment explanation
Indices: 224690989--224691077 Score: 126
Period size: 27 Copynumber: 3.2 Consensus size: 27
224690979 AGGAAGCGTC
224690989 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
224691017 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
224691044 CTGGTGGCACTGCCACAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATATCTGT-T
224691072 CTGGTG
1 CTGGTG
224691078 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
27 32 0.58
28 23 0.42
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:224691089 original size:55 final size:55
Alignment explanation
Indices: 224690989--224691102 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 55
224690979 AGGAAGCGTC
*
224690989 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTGCCACAT-TATCTGTAT
* * *
224691044 CTGGTGGC-ACTGCCACAAA-TATCTGTATCTGGTGACTCTGTCACATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAATTATCTGT-TCTGGTGACCCTGCCACATTATCTGTAT
224691099 CTGG
1 CTGG
224691103 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
54 14 0.27
55 38 0.73
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTGCCACATTATCTGTAT
Found at i:224692184 original size:11 final size:10
Alignment explanation
Indices: 224692156--224692189 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
224692146 AGCCTGTAAG
224692156 TATTCTGAAT
1 TATTCTGAAT
*
224692166 TTTTCTGAAT
1 TATTCTGAAT
224692176 ATATTCTGAAT
1 -TATTCTGAAT
224692187 TAT
1 TAT
224692190 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:224698893 original size:40 final size:39
Alignment explanation
Indices: 224698728--224698911 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
224698718 AAATTGAATG
* * *
224698728 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
224698768 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
224698808 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
224698848 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
224698887 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
224698912 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:224698936 original size:80 final size:81
Alignment explanation
Indices: 224698768--224698956 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
224698758 GCTGGAAATT
* * * *
224698768 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
224698833 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
224698849 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
224698912 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
224698928 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
224698957 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:224706994 original size:40 final size:39
Alignment explanation
Indices: 224706829--224707012 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
224706819 AAATTGAATG
* * *
224706829 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
224706869 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
224706909 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
224706949 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
224706988 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
224707013 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:224707037 original size:80 final size:81
Alignment explanation
Indices: 224706869--224707057 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
224706859 GCTGGAAATT
* * * *
224706869 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
224706934 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
224706950 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
224707013 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
224707029 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
224707058 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:224710332 original size:26 final size:26
Alignment explanation
Indices: 224710303--224710354 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
224710293 GCTGGTCGTT
224710303 GCCAAACATTTCCGTACTTCTTAATG
1 GCCAAACATTTCCGTACTTCTTAATG
224710329 GCCAAACATTTCCGTACTTCTTAATG
1 GCCAAACATTTCCGTACTTCTTAATG
224710355 AGCATATACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
GCCAAACATTTCCGTACTTCTTAATG
Found at i:224711098 original size:28 final size:29
Alignment explanation
Indices: 224711053--224711131 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 29
224711043 CCACGTGATT
* * * *
224711053 CAAGCCCGCACACATAGTGCCATATAGTC
1 CAAGCTCGCACACTTAGTGCCATACAGTA
* *
224711082 CAA-CTCGCACACTTAGTGCCGTACATTA
1 CAAGCTCGCACACTTAGTGCCATACAGTA
*
224711110 CAAGCTCGCACACTCAGTGCCA
1 CAAGCTCGCACACTTAGTGCCA
224711132 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 22 0.54
29 19 0.46
ACGTcount: A:0.29, C:0.35, G:0.16, T:0.19
Consensus pattern (29 bp):
CAAGCTCGCACACTTAGTGCCATACAGTA
Found at i:224711121 original size:29 final size:28
Alignment explanation
Indices: 224711030--224711130 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
224711020 TACTCAATCA
* *
224711030 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * *
224711059 CGCACACATAGTGCCATATAGTCCAA-CT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
224711087 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
224711116 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
224711131 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
27 3 0.05
28 23 0.40
29 32 0.55
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:224714814 original size:40 final size:40
Alignment explanation
Indices: 224714770--224714922 Score: 186
Period size: 41 Copynumber: 3.8 Consensus size: 40
224714760 GTTATAATAG
* *
224714770 CTCGCATAAATGCCTTCGGGA-CTTAACCCGGATTTGGGAA
1 CTCGCACAAATGCCTTC-GGATCTTAGCCCGGATTTGGGAA
*
224714810 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTTGGGAA
1 CTCGCACAAATGCCTTCGGATCTTAGCCCGGA-TTTGGGAA
* * **
224714851 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGATCTTAGCCCGGATTTGGGAA
224714891 CTCAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CTC-GCACAAATGCCTTC-GGATCTTAGCCCGGA
224714923 CATCATTCGA
Statistics
Matches: 102, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 49 0.48
41 50 0.49
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGATCTTAGCCCGGATTTGGGAA
Found at i:224714859 original size:41 final size:40
Alignment explanation
Indices: 224714729--224714922 Score: 189
Period size: 40 Copynumber: 4.8 Consensus size: 40
224714719 AGATATAGCG
* * * ***
224714729 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TGGGA
* * *
224714769 GCTCGCATAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGGA
*
224714809 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTTGGGA
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGA-TTTGGGA
* * **
224714850 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTGGGA
224714890 ACTCAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 ACTC-GCACAAATGCCTTCGGGACTTAGCCCGGA
224714923 CATCATTCGA
Statistics
Matches: 132, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 3 0.02
40 77 0.58
41 52 0.39
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGGA
Found at i:224714865 original size:81 final size:81
Alignment explanation
Indices: 224714738--224714922 Score: 198
Period size: 81 Copynumber: 2.3 Consensus size: 81
224714728 GACTCGCTCA
* * *** * *
224714738 AAAGCCTTCGGGACATAGCCCGG-TTATAATAGCTCGCATAAATGCCTTCGGGA-CTTAACCCGG
1 AAAGCCTTCGGGACTTAGCCCGGATTTTGGGAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
224714801 ATTTGGGAACTC-GCAC
65 ATATGGGAACTCAGCAC
* **
224714817 AAATGCCTTC-GGATCTTAGTCCGGATTTTGGGAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 AAA-GCCTTCGGGA-CTTAGCCCGGATTTTGGGAACTCGCACAAATGCCTTCGGATCTTAACCCG
**
224714881 GATATGGTCACTCAGCAC
64 GATATGGGAACTCAGCAC
224714899 AAAGCCTTCGGGACTTAGCCCGGA
1 AAAGCCTTCGGGACTTAGCCCGGA
224714923 CATCATTCGA
Statistics
Matches: 86, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
79 6 0.07
80 17 0.20
81 53 0.62
82 10 0.12
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.24
Consensus pattern (81 bp):
AAAGCCTTCGGGACTTAGCCCGGATTTTGGGAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATGGGAACTCAGCAC
Found at i:224719084 original size:40 final size:40
Alignment explanation
Indices: 224719025--224719166 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
224719015 AAATTGAATG
* * *
224719025 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
224719065 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
224719105 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
224719145 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
224719167 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:224719167 original size:40 final size:39
Alignment explanation
Indices: 224719064--224719192 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
224719054 TGCTGGAAAT
* * *
224719064 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
224719104 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
224719144 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
224719184 TATATCCGG
1 TATATCCGG
224719193 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:224727043 original size:29 final size:29
Alignment explanation
Indices: 224727010--224727170 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
224727000 GTGACGAGAT
224727010 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
224727039 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
224727068 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
224727097 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
224727126 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
224727155 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
224727171 AGTTCGGAGG
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:224734641 original size:29 final size:29
Alignment explanation
Indices: 224734608--224734768 Score: 259
Period size: 29 Copynumber: 5.6 Consensus size: 29
224734598 GTGACGAGAT
224734608 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
224734637 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
224734666 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
224734695 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
224734724 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
224734753 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
224734769 AGTTCGGAGG
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 123 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:224738481 original size:31 final size:31
Alignment explanation
Indices: 224738443--224738506 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
224738433 CCTTTTCATA
224738443 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
224738474 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
224738505 TT
1 TT
224738507 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:224738794 original size:21 final size:22
Alignment explanation
Indices: 224738720--224738851 Score: 211
Period size: 22 Copynumber: 6.1 Consensus size: 22
224738710 CCTAGCCTCT
224738720 TTTAATAACTGGGGCAAAGCCC
1 TTTAATAACTGGGGCAAAGCCC
224738742 TTTAATAACTGGGGCAAAGCCC
1 TTTAATAACTGGGGCAAAGCCC
224738764 TTTAATAACTGGGGCAAAGCCC
1 TTTAATAACTGGGGCAAAGCCC
224738786 TTT-ATAACTGGGGCAAAGCCC
1 TTTAATAACTGGGGCAAAGCCC
224738807 TTTAATAACT--GGCATAAGCCC
1 TTTAATAACTGGGGCA-AAGCCC
224738828 TTT-ATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCA-AAGCCC
224738849 TTT
1 TTT
224738852 TCTGGGCATA
Statistics
Matches: 107, Mismatches: 0, Indels: 7
0.94 0.00 0.06
Matches are distributed among these distances:
20 10 0.09
21 44 0.41
22 53 0.50
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (22 bp):
TTTAATAACTGGGGCAAAGCCC
Found at i:224738807 original size:43 final size:43
Alignment explanation
Indices: 224738720--224738851 Score: 216
Period size: 43 Copynumber: 3.1 Consensus size: 43
224738710 CCTAGCCTCT
224738720 TTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGGCAAAGCCC
1 TTTAATAACTGGGGCAAAGCCCTTT-ATAACTGGGGCAAAGCCC
224738764 TTTAATAACTGGGGCAAAGCCCTTTATAACTGGGGCAAAGCCC
1 TTTAATAACTGGGGCAAAGCCCTTTATAACTGGGGCAAAGCCC
224738807 TTTAATAACT--GGCATAAGCCCTTTATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCA-AAGCCCTTTATAACTGGGGCA-AAGCCC
224738849 TTT
1 TTT
224738852 TCTGGGCATA
Statistics
Matches: 86, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
41 9 0.10
42 24 0.28
43 28 0.33
44 25 0.29
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (43 bp):
TTTAATAACTGGGGCAAAGCCCTTTATAACTGGGGCAAAGCCC
Found at i:224738858 original size:18 final size:18
Alignment explanation
Indices: 224738817--224738871 Score: 83
Period size: 18 Copynumber: 2.9 Consensus size: 18
224738807 TTTAATAACT
224738817 GGCATAAGCCCTTTATAACTG
1 GGCATAAGCCCTTT-T--CTG
224738838 GGCATAAGCCCTTTTCTG
1 GGCATAAGCCCTTTTCTG
224738856 GGCATAAGCCCTTTTC
1 GGCATAAGCCCTTTTC
224738872 ACTTCCTCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
18 19 0.56
20 1 0.03
21 14 0.41
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (18 bp):
GGCATAAGCCCTTTTCTG
Found at i:224738941 original size:20 final size:20
Alignment explanation
Indices: 224738918--224738984 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
224738908 TTTATGATAC
224738918 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
224738938 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
224738958 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
224738978 ACCATGT
1 ATCATGT
224738985 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:224738949 original size:11 final size:11
Alignment explanation
Indices: 224738918--224738973 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
224738908 TTTATGATAC
224738918 ATCATGTGCAT
1 ATCATGTGCAT
*
224738929 ATCA--TACAT
1 ATCATGTGCAT
224738938 ATCATGTGCAT
1 ATCATGTGCAT
*
224738949 ATCA--TACAT
1 ATCATGTGCAT
*
224738958 GTCATGTGCAT
1 ATCATGTGCAT
224738969 ATCAT
1 ATCAT
224738974 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:224746593 original size:30 final size:31
Alignment explanation
Indices: 224746539--224746601 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
224746529 CCTTTTCATA
224746539 TTTCATATTTCATAACATTGGGCCGAAGCCT
1 TTTCATATTTCATAACATTGGGCCGAAGCCT
**
224746570 TTTCATATTTCATATTA-TGGGCCGAAGCCT
1 TTTCATATTTCATAACATTGGGCCGAAGCCT
224746600 TT
1 TT
224746602 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 15 0.50
31 15 0.50
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAACATTGGGCCGAAGCCT
Found at i:224746870 original size:23 final size:23
Alignment explanation
Indices: 224746815--224746933 Score: 211
Period size: 23 Copynumber: 5.1 Consensus size: 23
224746805 CCTAGCCTCT
*
224746815 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
224746838 TGTTAATAACTGGGGCATAAGCCC
1 T-TTAATAACTGGGGCATAAGCCC
224746862 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
224746885 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
224746908 TTTCATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
224746931 TTT
1 TTT
224746934 TACACTTCCT
Statistics
Matches: 93, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
23 71 0.76
24 22 0.24
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:224747009 original size:20 final size:20
Alignment explanation
Indices: 224746984--224747050 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
224746974 TTGTGATTAC
224746984 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
224747004 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
224747024 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
224747044 ACCATGT
1 ATCATGT
224747051 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:224747015 original size:11 final size:11
Alignment explanation
Indices: 224746984--224747039 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
224746974 TTGTGATTAC
224746984 ATCATGTGCAT
1 ATCATGTGCAT
*
224746995 ATCA--TACAT
1 ATCATGTGCAT
224747004 ATCATGTGCAT
1 ATCATGTGCAT
*
224747015 ATCA--TACAT
1 ATCATGTGCAT
*
224747024 GTCATGTGCAT
1 ATCATGTGCAT
224747035 ATCAT
1 ATCAT
224747040 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:224747412 original size:17 final size:17
Alignment explanation
Indices: 224747390--224747432 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
224747380 ATTTTACCCA
224747390 AATGGGCCCGAAAGCCC
1 AATGGGCCCGAAAGCCC
224747407 AATGGGCCCGAAAGCCC
1 AATGGGCCCGAAAGCCC
224747424 AATGGGCCC
1 AATGGGCCC
224747433 CACTTCGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.28, C:0.35, G:0.30, T:0.07
Consensus pattern (17 bp):
AATGGGCCCGAAAGCCC
Found at i:224750458 original size:40 final size:40
Alignment explanation
Indices: 224750413--224750620 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
224750403 CGGAATACAA
*
224750413 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
224750453 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
224750493 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
224750533 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
** * ** * * *
224750573 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTACC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
224750613 CCGGATAT
1 CCGGATAT
224750621 CATTCAATTG
Statistics
Matches: 143, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.01
40 139 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:224758489 original size:40 final size:39
Alignment explanation
Indices: 224758444--224758651 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
224758434 CGGAATACAA
*
224758444 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
224758484 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
224758524 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
224758564 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
224758604 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
224758644 CCGGATAT
1 CCGGATAT
224758652 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:224758584 original size:80 final size:81
Alignment explanation
Indices: 224758444--224758649 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
224758434 CGGAATACAA
* * *
224758444 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
224758508 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
224758524 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
224758587 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
224758604 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
224758650 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:224763243 original size:37 final size:38
Alignment explanation
Indices: 224763202--224763417 Score: 289
Period size: 38 Copynumber: 5.7 Consensus size: 38
224763192 GCTACTCGTT
*
224763202 CAAATGCCTTCGGACATAGCCCGG-TTA-TAAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTAGT-AACTCGCA
*
224763239 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGA-TTAGTAACTCGCA
224763278 C-AATGCCTTCGG-CTTAGCCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTAGTAACTCGCA
*
224763314 CAAATGCCTTCGGGCTTAGCCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTAGTAACTCGCA
* * *
224763352 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
224763393 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
224763418 CATCATTCGA
Statistics
Matches: 162, Mismatches: 8, Indels: 15
0.88 0.04 0.08
Matches are distributed among these distances:
36 14 0.09
37 43 0.27
38 48 0.30
39 23 0.14
40 23 0.14
41 11 0.07
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (38 bp):
CAAATGCCTTCGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:224763310 original size:75 final size:76
Alignment explanation
Indices: 224763202--224763417 Score: 289
Period size: 75 Copynumber: 2.8 Consensus size: 76
224763192 GCTACTCGTT
* *
224763202 CAAATGCCTTCGGACATAGCCCGG-TTA-TAAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
1 CAAATGCCTTCGGACTTAGCCCGGATTAGT-AACTCGCACAAATGCCTTCGGACTTAGCCCGGA-
224763265 TTAGTAACTCGCA
64 TTAGTAACTCGCA
*
224763278 C-AATGCCTTCGG-CTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATT
1 CAAATGCCTTCGGACTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGATT
224763341 AGTAACTCGCA
66 AGTAACTCGCA
* * *
224763352 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGAT-TAGTAAC-TCGCACAAATGCCTTC-GGACTTAGCCCG
224763416 GA
62 GA
224763418 CATCATTCGA
Statistics
Matches: 125, Mismatches: 7, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
74 23 0.18
75 56 0.45
76 2 0.02
77 11 0.09
78 12 0.10
79 21 0.17
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (76 bp):
CAAATGCCTTCGGACTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGATT
AGTAACTCGCA
Found at i:224764659 original size:10 final size:10
Alignment explanation
Indices: 224764644--224764676 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
224764634 AACATGAGAG
224764644 CTTTTTTTTT
1 CTTTTTTTTT
224764654 CTTTTTTTTT
1 CTTTTTTTTT
*
224764664 C-TTCTTTTT
1 CTTTTTTTTT
224764673 CTTT
1 CTTT
224764677 CTTCTATTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:224764663 original size:13 final size:13
Alignment explanation
Indices: 224764645--224764681 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
224764635 ACATGAGAGC
224764645 TTTTTTT-TTCTT
1 TTTTTTTCTTCTT
224764657 TTTTTTTCTTCTT
1 TTTTTTTCTTCTT
*
224764670 TTTCTTTCTTCT
1 TTTTTTTCTTCT
224764682 ATTCGGCTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTTCTTCTT
Found at i:224764721 original size:62 final size:62
Alignment explanation
Indices: 224764596--224764733 Score: 145
Period size: 62 Copynumber: 2.2 Consensus size: 62
224764586 CCTCAAGCTC
* * *** *
224764596 TTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTTTTTTCTTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGATGACTCTTTCTTT
* * *
224764658 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCTAGGAAGAAGCATGA-ATGATGACTCTTT-TTT
1 TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAA-CATGAGA-GATGACTCTTTCTTT
*
224764720 TTTCTTTTTTCTTT
1 TTT-TTTCTTCTTT
224764734 CACCATCTTA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
62 43 0.68
63 20 0.32
ACGTcount: A:0.15, C:0.18, G:0.11, T:0.56
Consensus pattern (62 bp):
TTTTTTCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGATGACTCTTTCTTT
Found at i:224771362 original size:76 final size:75
Alignment explanation
Indices: 224771233--224771478 Score: 271
Period size: 76 Copynumber: 3.2 Consensus size: 75
224771223 GAATCACGTA
* ** *
224771233 CCTTCGGAATTTAACCGGATATAGCT-ACTCGTTCAAATGCCTTCGGACATAGCCCGGTTATAGT
1 CCTTCGG-ACTTAACCGGAT-TAG-TAACTCGCACAAATGCCTTCGGACTTAGCCCGG-TATAGT
224771297 AACTCGCACAAATG
62 AACTCGCACAAATG
* * *
224771311 CCTTCGGACTTAACCGGATTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAGTAAC
1 CCTTCGGACTTAACCGGATTAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTA-TAGTAAC
224771376 TCGCACAAATG
65 TCGCACAAATG
* * *
224771387 CCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGT
1 CCTTCGGACTTA-ACCGG-ATTAGTAACTCGCACAAATGCCTTCGGA-CTTAGCCCGG-TATAGT
* *
224771452 CACTTAGCACAAA-G
62 AAC-TCGCACAAATG
224771466 CCTTCGGGACTTA
1 CCTTC-GGACTTA
224771479 GCCCGGACAT
Statistics
Matches: 144, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
75 2 0.01
76 58 0.40
77 15 0.10
78 33 0.23
79 21 0.15
80 15 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (75 bp):
CCTTCGGACTTAACCGGATTAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGTATAGTAACT
CGCACAAATG
Found at i:224771379 original size:39 final size:38
Alignment explanation
Indices: 224771266--224771485 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 38
224771256 GCTACTCGTT
* * *
224771266 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAT-TAGTAACTCGCA
* *
224771305 CAAATGCCTTCGGACTTA-ACCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTAGTAACTCGCA
*
224771342 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGG-ATTAGTAACTCGCA
224771381 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGG-ATTAGTAACTCGCA
* * * *
224771420 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAT-TAGTAAC-TCGCA
224771461 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
224771486 CATCATTCGA
Statistics
Matches: 162, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
37 28 0.17
38 9 0.06
39 84 0.52
40 33 0.20
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (38 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTAGTAACTCGCA
Found at i:224776061 original size:29 final size:29
Alignment explanation
Indices: 224776027--224776186 Score: 83
Period size: 29 Copynumber: 5.6 Consensus size: 29
224776017 TACTCGATTT
* * *
224776027 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
224776056 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
224776085 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * ** * *
224776114 TGCACACTCAGTGCCATA-TTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
224776142 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
224776171 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
224776187 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
28 26 0.24
29 84 0.76
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:224776145 original size:28 final size:29
Alignment explanation
Indices: 224776086--224776186 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
224776076 CTTCGAGCTC
224776086 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
224776115 GCACACTCAGTGCCATAT-TTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
224776143 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
224776172 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
224776187 ATCTCGTCAC
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
28 27 0.39
29 42 0.61
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:224783887 original size:29 final size:29
Alignment explanation
Indices: 224783853--224784041 Score: 96
Period size: 29 Copynumber: 6.6 Consensus size: 29
224783843 TACTCGATTT
* * *
224783853 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
224783882 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
224783911 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * *** * *
224783940 TGCACACTCAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
224783969 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
224783998 TGCACACTTAGTGCCATA-TATTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
*
224784026 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
224784042 ATCTCGTCAC
Statistics
Matches: 138, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
28 25 0.18
29 112 0.81
30 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:224783945 original size:58 final size:57
Alignment explanation
Indices: 224783912--224784041 Score: 233
Period size: 58 Copynumber: 2.3 Consensus size: 57
224783902 CTTCGAGCTC
*
224783912 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATA-TATTCCAGCAT
*
224783970 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTCCAGCAT
224784027 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
224784042 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
57 25 0.36
58 45 0.64
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (57 bp):
GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTCCAGCAT
Found at i:224783974 original size:87 final size:86
Alignment explanation
Indices: 224783883--224784041 Score: 230
Period size: 87 Copynumber: 1.8 Consensus size: 86
224783873 ATTTAAGCCC
* *
224783883 GCACACACAGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACAC
1 GCACACACAGTGCCATACACTTCCAGCAT-GCACACTTAGTGCCATATA-TTCCAGCATGCACAC
224783947 TCAGTGCCATATTTTTCCAGCAT
64 TCAGTGCCATATTTTTCCAGCAT
** * * *
224783970 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTCCAGCATGCACACTT
1 GCACACACAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTCCAGCATGCACACTC
224784035 AGTGCCA
66 AGTGCCA
224784042 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
86 23 0.36
87 40 0.62
88 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.27
Consensus pattern (86 bp):
GCACACACAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTCCAGCATGCACACTC
AGTGCCATATTTTTCCAGCAT
Found at i:224786607 original size:80 final size:80
Alignment explanation
Indices: 224786510--224786681 Score: 208
Period size: 80 Copynumber: 2.1 Consensus size: 80
224786500 CGGCGTTTTT
* *
224786510 ACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTTTTACTAAAACG-CGCTAAAAA-CAGA-CTAT
1 ACGCCGCTAAAAACAGAGCAATAGCGACG--CTTTTACT-AAACGCCGCTAAAAACCAGAGC-AT
224786572 TAACGGCAC-TTTGGTAAA
62 TAACGGCACTTTTGGTAAA
* * ** *
224786590 ACGCCGCTAAAACCAGAGCATTAGCGACGCTTTTGGTAAACGCCGCTAAAAACCAGAGCATTAGC
1 ACGCCGCTAAAAACAGAGCAATAGCGACGCTTTTACTAAACGCCGCTAAAAACCAGAGCATTAAC
*
224786655 GGCGCTTTTGGTAAA
66 GGCACTTTTGGTAAA
224786670 ACGCCGCTAAAA
1 ACGCCGCTAAAA
224786682 GTCATATACC
Statistics
Matches: 80, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
77 5 0.06
78 14 0.17
79 13 0.16
80 48 0.60
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (80 bp):
ACGCCGCTAAAAACAGAGCAATAGCGACGCTTTTACTAAACGCCGCTAAAAACCAGAGCATTAAC
GGCACTTTTGGTAAA
Found at i:224786642 original size:40 final size:41
Alignment explanation
Indices: 224786510--224786681 Score: 187
Period size: 40 Copynumber: 4.3 Consensus size: 41
224786500 CGGCGTTTTT
* * * **
224786510 ACGCCGCTAAAAA-CAGAGCAATAGCGGCGTTTTTTTACTAAA
1 ACGCCGCTAAAAACCAGAGCATTAGCGACG--CTTTTGGTAAA
* * *
224786552 ACG-CGCTAAAAA-CAGA-CTATTAACGGCAC-TTTGGTAAA
1 ACGCCGCTAAAAACCAGAGC-ATTAGCGACGCTTTTGGTAAA
224786590 ACGCCGCT-AAAACCAGAGCATTAGCGACGCTTTTGGT-AA
1 ACGCCGCTAAAAACCAGAGCATTAGCGACGCTTTTGGTAAA
*
224786629 ACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAA
1 ACGCCGCTAAAAACCAGAGCATTAGCGACGCTTTTGGTAAA
224786670 ACGCCGCTAAAA
1 ACGCCGCTAAAA
224786682 GTCATATACC
Statistics
Matches: 113, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
38 14 0.12
39 26 0.23
40 36 0.32
41 34 0.30
42 3 0.03
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (41 bp):
ACGCCGCTAAAAACCAGAGCATTAGCGACGCTTTTGGTAAA
Found at i:224786858 original size:14 final size:14
Alignment explanation
Indices: 224786836--224786880 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
224786826 TTAATTATCA
*
224786836 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
224786850 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
224786864 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
224786878 TTA
1 TTA
224786881 AGCAGGTTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:224787722 original size:15 final size:15
Alignment explanation
Indices: 224787702--224787733 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
224787692 TTTAATTTAG
*
224787702 AAGATAAATGTATAT
1 AAGATAAATATATAT
224787717 AAGATAAATATATAT
1 AAGATAAATATATAT
224787732 AA
1 AA
224787734 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:224797685 original size:25 final size:27
Alignment explanation
Indices: 224797651--224797701 Score: 70
Period size: 25 Copynumber: 1.9 Consensus size: 27
224797641 AATCGGTAAA
*
224797651 ATTTTTCTATCA-AT-ATTTTCATACG
1 ATTTTCCTATCATATAATTTTCATACG
224797676 ATTTTCCTATCATATCAATTTTCATA
1 ATTTTCCTATCATAT-AATTTTCATA
224797702 AAAATATTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 11 0.50
26 2 0.09
28 9 0.41
ACGTcount: A:0.29, C:0.18, G:0.02, T:0.51
Consensus pattern (27 bp):
ATTTTCCTATCATATAATTTTCATACG
Found at i:224807274 original size:25 final size:28
Alignment explanation
Indices: 224807220--224807274 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
224807210 AATGGGTTCG
224807220 TTATGATGTAGATGAAGATATTTACGAT
1 TTATGATGTAGATGAAGATATTTACGAT
*
224807248 TTATGATGTAG-T-AAGAT-TTTATGAT
1 TTATGATGTAGATGAAGATATTTACGAT
224807273 TT
1 TT
224807275 TTATTTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 9 0.35
26 5 0.19
27 1 0.04
28 11 0.42
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.45
Consensus pattern (28 bp):
TTATGATGTAGATGAAGATATTTACGAT
Found at i:224811495 original size:8 final size:9
Alignment explanation
Indices: 224811461--224811501 Score: 75
Period size: 9 Copynumber: 4.7 Consensus size: 9
224811451 TCTCCAACCT
224811461 TATTTTAAA
1 TATTTTAAA
224811470 TATTTTAAA
1 TATTTTAAA
224811479 TATTTTAAA
1 TATTTTAAA
224811488 TA-TTTAAA
1 TATTTTAAA
224811496 TATTTT
1 TATTTT
224811502 GGTTATTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 8 0.26
9 23 0.74
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
TATTTTAAA
Found at i:224811510 original size:17 final size:17
Alignment explanation
Indices: 224811461--224811501 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
224811451 TCTCCAACCT
224811461 TATTTTAAATATTTTAAA
1 TATTTTAAATA-TTTAAA
224811479 TATTTTAAATATTTAAA
1 TATTTTAAATATTTAAA
224811496 TATTTT
1 TATTTT
224811502 GGTTATTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTTTAAATATTTAAA
Found at i:224811733 original size:133 final size:133
Alignment explanation
Indices: 224811495--224811881 Score: 747
Period size: 133 Copynumber: 2.9 Consensus size: 133
224811485 AAATATTTAA
224811495 ATATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAG
1 ATATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAG
*
224811560 TGTGGACTTAGATTGATTTAAGAGTTTAATGATGTCTTGTTGCTCACGTTTTATATAATAAAATT
66 TGTGGACTTAGATTGATTTAAGAGTTTAATGCTGTCTTGTTGCTCACGTTTTATATAATAAAATT
224811625 GTT
131 GTT
224811628 ATATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAG
1 ATATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAG
*
224811693 TGTGGACTTAGATTGATTTAAGAGTTTAATGCTATCTTGTTGCTCACGTTTTATATAATAAAATT
66 TGTGGACTTAGATTGATTTAAGAGTTTAATGCTGTCTTGTTGCTCACGTTTTATATAATAAAATT
224811758 GTT
131 GTT
224811761 ATATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAG
1 ATATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAG
*
224811826 TGTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
66 TGTGGACTTAGATTGATTTAAGAGTTTAATGCTGTCTTGTTGCTCACGTTTTATAT
224811882 TGTTGAATTC
Statistics
Matches: 250, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 250 1.00
ACGTcount: A:0.21, C:0.10, G:0.18, T:0.51
Consensus pattern (133 bp):
ATATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAG
TGTGGACTTAGATTGATTTAAGAGTTTAATGCTGTCTTGTTGCTCACGTTTTATATAATAAAATT
GTT
Found at i:224813977 original size:21 final size:21
Alignment explanation
Indices: 224813948--224813987 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
224813938 GTTTTTATAT
*
224813948 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
224813969 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
224813988 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Found at i:224820478 original size:43 final size:43
Alignment explanation
Indices: 224820431--224820742 Score: 333
Period size: 42 Copynumber: 7.5 Consensus size: 43
224820421 CTGGACACAT
* *
224820431 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAAGTCTA
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTACAGGTCTA
* *
224820474 TAGCGGCGTTTTTTATAAAAGCGCCGCT-AAAGTTCTTGGTCTA
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTAC-AGGTCTA
224820517 TAGCGGC-TTTTTT-TAAAAGCGCCGCTAAAAGTACAGGTCTA
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTACAGGTCTA
224820558 TAGCGGCGTTTTTTATAAAAGCG-CGCTAAAAGTACAGGTCTA
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTACAGGTCTA
* *
224820600 TAGC-GCGTTTTTTATAAAAGCGCCGCT-AAAGTTCCTGGTCT-
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAG-TACAGGTCTA
* * * * * * *
224820641 TTGCGGCG-CTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTT
1 TAGCGGCGTTTTTTAT-AAAAGCGCCGCTAAAAGTACAGGTCTA
* * * * * *
224820684 TGGCGGCG-TTTTT-TAAGAGCG-CGCTAAAGGTCCTGGTCTT
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTACAGGTCTA
*
224820724 TAGCGGCG-CTTTTATAAAA
1 TAGCGGCGTTTTTTATAAAA
224820743 ACTCCGCGAA
Statistics
Matches: 239, Mismatches: 19, Indels: 24
0.85 0.07 0.09
Matches are distributed among these distances:
40 30 0.13
41 66 0.28
42 82 0.34
43 61 0.26
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (43 bp):
TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTACAGGTCTA
Found at i:224822121 original size:20 final size:20
Alignment explanation
Indices: 224822096--224822134 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
224822086 CCGTGTATTC
224822096 ATTTGTTGCAATGTAAAAAT
1 ATTTGTTGCAATGTAAAAAT
224822116 ATTTGTTGCAATGTAAAAA
1 ATTTGTTGCAATGTAAAAA
224822135 CTTGAATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.38
Consensus pattern (20 bp):
ATTTGTTGCAATGTAAAAAT
Found at i:224827251 original size:28 final size:28
Alignment explanation
Indices: 224827215--224827367 Score: 155
Period size: 29 Copynumber: 5.4 Consensus size: 28
224827205 ACCCCTAGAT
* *
224827215 ACATGCATATGGCCCACTGGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
* *
224827243 TCATTCATATGGCCCA-TATGGCCCAGTTC
1 ACATTCATATGGCCCACTA-GGCCCA-ATC
* * * *
224827272 ATATTCTTATGGCCCACTAAGCCAAATTC
1 ACATTCATATGGCCCACTAGGCCCAA-TC
*
224827301 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCC-AATC
* **
224827330 ACATTTATATGGCCCGTTAGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
224827358 ACATTCATAT
1 ACATTCATAT
224827368 TCATGCTCAC
Statistics
Matches: 102, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
27 1 0.01
28 33 0.32
29 64 0.63
30 4 0.04
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAGGCCCAATC
Found at i:224827341 original size:58 final size:58
Alignment explanation
Indices: 224827221--224827367 Score: 174
Period size: 58 Copynumber: 2.6 Consensus size: 58
224827211 AGATACATGC
* * ** *
224827221 ATATGGCCCACTGGGCCCAATCTCATTCATATGGCCCATATGGCCCAGTTCATATTCT
1 ATATGGCCCACTAGGCCCAATCACATTCATATGGCCCATATGGCCCAAATCACATTCT
* *
224827279 -TATGGCCCACTAAGCCAAATTCACATTCATATGGCCCAT-TAGGCCCAAATCACATT-T
1 ATATGGCCCACTAGGCCCAA-TCACATTCATATGGCCCATAT-GGCCCAAATCACATTCT
**
224827336 ATATGGCCCGTTAGGCCCAATCACATTCATAT
1 ATATGGCCCACTAGGCCCAATCACATTCATAT
224827368 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
57 30 0.40
58 45 0.60
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (58 bp):
ATATGGCCCACTAGGCCCAATCACATTCATATGGCCCATATGGCCCAAATCACATTCT
Found at i:224827445 original size:16 final size:17
Alignment explanation
Indices: 224827424--224827458 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
224827414 TTTGCCTATT
224827424 ATGGGCCCA-ATAGCCC
1 ATGGGCCCATATAGCCC
*
224827440 ATGGGCCCATTTAGCCC
1 ATGGGCCCATATAGCCC
224827457 AT
1 AT
224827459 TCTGGCTCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.20
Consensus pattern (17 bp):
ATGGGCCCATATAGCCC
Found at i:224835795 original size:38 final size:39
Alignment explanation
Indices: 224835753--224835915 Score: 140
Period size: 38 Copynumber: 4.2 Consensus size: 39
224835743 CGGAATATAA
224835753 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTA-
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAC
* * * *
224835791 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTA-C
** *
224835831 CCGG--ATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTT-AC
* * * *
224835869 CCGGATATAATTC-C-AGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA-TCACTAGCACAAATGCCTTCGGGTCTTA-C
224835908 CCGGATAT
1 CCGGATAT
224835916 CATTCAATTT
Statistics
Matches: 102, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
37 1 0.01
38 63 0.62
39 29 0.28
40 8 0.08
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAC
Found at i:224835911 original size:39 final size:39
Alignment explanation
Indices: 224835844--224835920 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
224835834 GATAGCCACT
*
224835844 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTCC
1 AGCACAATTGCCTTCGGGGCTTAACCCGGATATAATTCC
* * * *
224835883 AGCATAATTGTCTTCGGGGCTTAGCCCGGATATCATTC
1 AGCACAATTGCCTTCGGGGCTTAACCCGGATATAATTC
224835921 AATTTCTCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (39 bp):
AGCACAATTGCCTTCGGGGCTTAACCCGGATATAATTCC
Found at i:224843796 original size:40 final size:39
Alignment explanation
Indices: 224843751--224843917 Score: 156
Period size: 40 Copynumber: 4.2 Consensus size: 39
224843741 CGGAATATAA
224843751 CCGGATATAATCATATGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCATA-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
224843791 CCGGATAGAATAACTCGCACGAATGCCTTCGAGTCTTAGC
1 CCGGATATAATCA-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
224843831 CTGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCA-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
224843871 CCGGATATAATTC-CAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA-TCATAGCACAAATGCCTTCGGGTCTTAGC
224843910 CCGGATAT
1 CCGGATAT
224843918 CATTCAATTT
Statistics
Matches: 102, Mismatches: 23, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
39 29 0.28
40 71 0.70
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCATAGCACAAATGCCTTCGGGTCTTAGC
Found at i:224843913 original size:39 final size:39
Alignment explanation
Indices: 224843846--224843922 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
224843836 TATAGCCACT
*
224843846 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTCC
1 AGCACAATTGCCTTCGGGGCTTAACCCGGATATAATTCC
* * * *
224843885 AGCATAATTGTCTTCGGGGCTTAGCCCGGATATCATTC
1 AGCACAATTGCCTTCGGGGCTTAACCCGGATATAATTC
224843923 AATTTCTCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (39 bp):
AGCACAATTGCCTTCGGGGCTTAACCCGGATATAATTCC
Found at i:224844865 original size:17 final size:19
Alignment explanation
Indices: 224844843--224844880 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
224844833 AAGGGAGAAT
224844843 AAAG-AAATG-GAAAAAAA
1 AAAGAAAATGAGAAAAAAA
224844860 AAAGAAAATGATGAAAAAAA
1 AAAGAAAATGA-GAAAAAAA
224844880 A
1 A
224844881 TGTGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 5 0.28
20 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAGAAAATGAGAAAAAAA
Found at i:224846221 original size:29 final size:29
Alignment explanation
Indices: 224846189--224846291 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
224846179 GTGACGAGAT
* *
224846189 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
224846218 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
224846247 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
224846276 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
224846292 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:224852606 original size:17 final size:19
Alignment explanation
Indices: 224852584--224852621 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
224852574 AAGGGAGAAT
224852584 AAAG-AAATG-GAAAAAAA
1 AAAGAAAATGAGAAAAAAA
224852601 AAAGAAAATGATGAAAAAAA
1 AAAGAAAATGA-GAAAAAAA
224852621 A
1 A
224852622 TGTGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 5 0.28
20 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAGAAAATGAGAAAAAAA
Found at i:224853960 original size:29 final size:29
Alignment explanation
Indices: 224853928--224854030 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
224853918 GTGACGAGAT
* *
224853928 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
224853957 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
224853986 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
224854015 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
224854031 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:224855581 original size:49 final size:49
Alignment explanation
Indices: 224855509--224855666 Score: 307
Period size: 49 Copynumber: 3.2 Consensus size: 49
224855499 GGGGTGTTAC
224855509 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
*
224855558 ATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
224855607 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
224855656 ATCACATATAT
1 ATCACATATAT
224855667 TATTATGTAC
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 107 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (49 bp):
ATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:224859544 original size:89 final size:89
Alignment explanation
Indices: 224859377--224859558 Score: 242
Period size: 89 Copynumber: 2.0 Consensus size: 89
224859367 NNNNNNNNNN
* ** *
224859377 TTTTGAAAAGCATAAATTAAAAACATTAATTGAAAATACCTCAGCATGTGATCCTAAGGCTCAAT
1 TTTTGAAAAACATAAATTAAAAACAGAAATTGAAAATACCTCAGCATGTGATCCTAAGGCTCAAC
224859442 TCACCTCTAGCAATATGAATTGAT
66 TCACCTCTAGCAATATGAATTGAT
* * * *
224859466 TTTTGAAAAACATAAATTGAAAAACGGAAATTGTAAATACCTC-GACATGTGA-CCTGAGGTTCA
1 TTTTGAAAAACATAAATT-AAAAACAGAAATTGAAAATACCTCAG-CATGTGATCCTAAGGCTCA
* *
224859529 ACTCACCTCTCGCAATATGAGTTGAT
64 ACTCACCTCTAGCAATATGAATTGAT
224859555 TTTT
1 TTTT
224859559 TTGATGACAG
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
89 54 0.67
90 27 0.33
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (89 bp):
TTTTGAAAAACATAAATTAAAAACAGAAATTGAAAATACCTCAGCATGTGATCCTAAGGCTCAAC
TCACCTCTAGCAATATGAATTGAT
Found at i:224859635 original size:75 final size:73
Alignment explanation
Indices: 224859493--224860157 Score: 412
Period size: 73 Copynumber: 9.0 Consensus size: 73
224859483 TGAAAAACGG
* * * *
224859493 AAATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTC-A-ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
224859558 TTTGATGACAG
64 TTTGA-AAAAT
** *
224859569 AAATT-AAAACTAACCTCTGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAA-T-ACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
224859633 TTTGAAAAAT
64 TTTGAAAAAT
* *
224859643 AGATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTCTCGCAATATGAGTTGA--TTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
224859705 TGAAAAAAT
66 TG-AAAAAT
* * *
224859714 AGATTGAAAAT-CCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---GTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
224859775 TGAAACAA-
66 TGAAA-AAT
* *
224859783 AAATT-AACAATACCTCAGCGTGTCC-GAAGCTCAA-TCACCTCTCGC-ATATGAGTTGATTTTT
1 AAATTGAA-AATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
224859844 TT-AAAAAC
65 TTGAAAAAT
* * * * * *
224859852 ATTATTGAAAATACCTCGGCATGTGATCCTGAGGCT--ATTCACCTCTAG-AATATGAATTGA--
1 A-AATTGAAAATACCTC--AACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
224859912 TTTTTGAAAAACAT
62 TTTTTG-AAAA-AT
*** * * * ** * * *
224859926 AAATTGAAAA-ACGGAAATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCAC-C--TCTC
1 AAATTGAAAATACCTCAA-CGT--GT-CCT-G--A-G-G--CTCA-ACTCACCTCTCGCAATAT-
* * *
224859987 GCAATAGAGTTGATTTTTTTGATGAACAA-
53 G-AGTTGA-TT-TTTTT---GA--AA-AAT
* * *
224860016 AAATT-AAACTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
224860080 TTGAAAAA-
65 TTGAAAAAT
* * *
224860088 AGATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
224860152 TGAAAA
66 TGAAAA
224860158 GAAATAAAAA
Statistics
Matches: 470, Mismatches: 64, Indels: 115
0.72 0.10 0.18
Matches are distributed among these distances:
67 11 0.02
68 15 0.03
69 22 0.05
70 65 0.14
71 58 0.12
72 51 0.11
73 91 0.19
74 15 0.03
75 57 0.12
76 7 0.01
77 6 0.01
78 12 0.03
79 9 0.02
80 3 0.01
81 5 0.01
82 2 0.00
83 13 0.03
85 1 0.00
86 3 0.01
87 5 0.01
89 6 0.01
90 9 0.02
91 3 0.01
92 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (73 bp):
AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TGAAAAAT
Found at i:224859737 original size:70 final size:73
Alignment explanation
Indices: 224859493--224859935 Score: 425
Period size: 70 Copynumber: 6.1 Consensus size: 73
224859483 TGAAAAACGG
* * * *
224859493 AAATTGTAAATACCTCGACATGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTC-A-ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
** * *
224859558 TTTGATGACAG
63 TTTGAAAAAAT
** *
224859569 AAATT-AAAACTAACCTCTGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAA-T-ACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
224859633 TTTG-AAAAAT
63 TTTGAAAAAAT
* *
224859643 AGATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
224859706 GAAAAAAT
66 GAAAAAAT
* * *
224859714 AGATTGAAAAT-CCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--GTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
224859776 GAAACAA-
66 GAAAAAAT
* *
224859783 AAATT-AACAATACCTCAGCGTGTCC-GAAGCTCAA-TCACCTCTCGC-ATATGAGTTGATTTTT
1 AAATTGAA-AATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
224859844 TTAAAAACAT
65 TGAAAAA-AT
* * * * * *
224859854 -TATTGAAAATACCTCGGCATGTGATCCTGAGGCT--ATTCACCTCTAG-AATATGAATTGA-TT
1 AAATTGAAAATACCTC--AACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
224859914 TTTGAAAAACAT
63 TTTGAAAAA-AT
224859926 AAATTGAAAA
1 AAATTGAAAA
224859936 ACGGAAATTG
Statistics
Matches: 316, Mismatches: 32, Indels: 41
0.81 0.08 0.11
Matches are distributed among these distances:
67 11 0.03
68 13 0.04
69 22 0.07
70 65 0.21
71 38 0.12
72 36 0.11
73 54 0.17
74 12 0.04
75 54 0.17
76 6 0.02
77 5 0.02
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (73 bp):
AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAAAT
Found at i:224859885 original size:143 final size:144
Alignment explanation
Indices: 224859526--224860157 Score: 491
Period size: 143 Copynumber: 4.3 Consensus size: 144
224859516 GACCTGAGGT
* ** *
224859526 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGACAGAAATT-AAAACTAACCTCTGC-
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACA-TAATTGAAAA-T-ACCTC-GCA
* *
224859589 GTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGATTGAAAAT
62 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATAAATTGAAAAT
* *
224859654 ACCTCAACGTGTCTTGAGGC
125 ACCTCAACGTGTCTCGAAGC
* *
224859674 TCAACTCA-CTCTCGCAATATGAGTTGA-TTTTTGAAAAA-ATAGATTGAAAAT-CCTC-AACGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACATA-ATTGAAAATACCTCGCA-GT
* *
224859734 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-GTTTGAAACAA-AAATT-AACAATAC
64 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-AATAAATTGAA-AATAC
*
224859796 CTCAGCGTGTC-CGAAGC
127 CTCAACGTGTCTCGAAGC
*
224859813 TCAA-TCACCTCTCGC-ATATGAGTTGATTTTTTTAAAAACATTATTGAAAATACCTCGGCATGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACATAATTGAAAATACCTC-GCA-GT
* * *
224859876 GATCCTGAGGCT--ATTCACCTCTAG-AATATGAATTGATTTTTGAAAAACATAAATTGAAAAAC
64 G-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAA-ATAAATT-------
* * * *
224859938 GGAAATTGTAAATACCTCGACATGTGAC-CTGAGGT
119 -G--A----AAATACCTC-A-ACGTGTCTC-GAAGC
** * *
224859973 TCAACTCACCTCTCGCAATA-GAGTTGATTTTTTTGATGAACAAAAATT-AAACTACCTCAGC-G
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-AAAAAC-ATAATTGAAAATACCTC-GCAG
* *
224860035 TGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAA-AGATTGAAAAT
63 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAAATAAATTGAAAAT
*
224860099 ACCTCAACGTGTCT-TAAGGC
125 ACCTCAACGTGTCTCGAA-GC
*
224860119 TCAACTCA-CTCTCGCAATATGAGTTGATTTTTTTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAA
224860158 GAAATAAAAA
Statistics
Matches: 390, Mismatches: 46, Indels: 99
0.73 0.09 0.19
Matches are distributed among these distances:
138 14 0.04
139 36 0.09
140 43 0.11
141 17 0.04
142 8 0.02
143 56 0.14
144 1 0.00
145 19 0.05
146 39 0.10
147 20 0.05
148 17 0.04
152 1 0.00
154 2 0.01
157 8 0.02
158 2 0.01
159 14 0.04
160 10 0.03
161 35 0.09
162 33 0.08
163 5 0.01
164 4 0.01
165 6 0.02
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (144 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACATAATTGAAAATACCTCGCAGTGT
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAAATACCTCA
ACGTGTCTCGAAGC
Found at i:224871945 original size:2 final size:2
Alignment explanation
Indices: 224871938--224871967 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
224871928 TGTACGTAAA
224871938 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
224871968 AATAGTAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:224872026 original size:25 final size:23
Alignment explanation
Indices: 224871974--224872028 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
224871964 TATAAATAGT
224871974 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
224871997 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
224872022 AATAGTG
1 AATAGTG
224872029 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:224872565 original size:19 final size:19
Alignment explanation
Indices: 224872541--224872577 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
224872531 TATAAATAAT
*
224872541 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
224872560 AATGATATTAGAAATATA
1 AATGATATTAGAAATATA
224872578 TATAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:224872675 original size:24 final size:24
Alignment explanation
Indices: 224872634--224872689 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
224872624 ACACAATAAT
*
224872634 ATATATAACATACAATAT-TGAAAA
1 ATATAT-ACATACAATATACGAAAA
224872658 CATATATACATA-ATATATACGAAAA
1 -ATATATACATACA-ATATACGAAAA
224872683 ATATATA
1 ATATATA
224872690 GATATACATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 16 0.57
25 11 0.39
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (24 bp):
ATATATACATACAATATACGAAAA
Found at i:224872714 original size:30 final size:30
Alignment explanation
Indices: 224872661--224872735 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
224872651 TTGAAAACAT
*
224872661 ATATACATAATATATACGAAAAATATATAG
1 ATATACATAATATATACGAAAAATATATAC
** *
224872691 ATATACATAATATAATA-TTAAAATATTTAC
1 ATATACATAATAT-ATACGAAAAATATATAC
224872721 ATAATACATAA-ATAT
1 AT-ATACATAATATAT
224872736 TAGGGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 2 0.05
30 26 0.67
31 11 0.28
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.35
Consensus pattern (30 bp):
ATATACATAATATATACGAAAAATATATAC
Found at i:224872799 original size:25 final size:23
Alignment explanation
Indices: 224872764--224872822 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 23
224872754 ATAATAATGC
224872764 TACATAAATATAT-TAAAAATATA
1 TACATAAATATATATAAAAA-ATA
224872787 TACATATATATATATATAAAAAATA
1 TACATA-A-ATATATATAAAAAATA
*
224872812 TA-AAAAATATA
1 TACATAAATATA
224872823 CACTAATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
22 5 0.16
23 7 0.22
24 3 0.09
25 11 0.34
26 6 0.19
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (23 bp):
TACATAAATATATATAAAAAATA
Found at i:224875180 original size:4 final size:4
Alignment explanation
Indices: 224875171--224875199 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
224875161 CCCTTTTCTA
224875171 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
224875200 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:224881641 original size:47 final size:47
Alignment explanation
Indices: 224881532--224881642 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
224881522 CCGGGATAAG
*
224881532 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
224881579 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
224881626 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
224881643 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:224885503 original size:40 final size:40
Alignment explanation
Indices: 224885446--224885609 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
224885436 TGAATGATAC
* * * *
224885446 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
224885486 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
224885526 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
224885566 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
224885606 CCGG
1 CCGG
224885610 TTGAATCCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:224893537 original size:40 final size:40
Alignment explanation
Indices: 224893480--224893643 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
224893470 TTGAATGATA
* * * *
224893480 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
224893520 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
224893560 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
224893600 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
224893640 CCGG
1 CCGG
224893644 TTGAATCCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:224899267 original size:24 final size:24
Alignment explanation
Indices: 224899235--224899460 Score: 348
Period size: 24 Copynumber: 9.5 Consensus size: 24
224899225 TCAAATGCAG
224899235 TATGTGTGCGATTCACTATGGCAC
1 TATGTGTGCGATTCACTATGGCAC
224899259 TATGTGTGCGATT-ACTATGGCAC
1 TATGTGTGCGATTCACTATGGCAC
224899282 TATGTGTGCGATTCACTATGGCAC
1 TATGTGTGCGATTCACTATGGCAC
224899306 TATGTGTGCGACTT-ACTATGGCAC
1 TATGTGTGCGA-TTCACTATGGCAC
224899330 TATGTGTGCGATTCACTATGGCAC
1 TATGTGTGCGATTCACTATGGCAC
224899354 TATGTGTGCGATTCACTATGGCAC
1 TATGTGTGCGATTCACTATGGCAC
*
224899378 TATGTGTGCGATTTACTATGGCAC
1 TATGTGTGCGATTCACTATGGCAC
* * *
224899402 TAAGTGTGCGATTTACTATAGCAC
1 TATGTGTGCGATTCACTATGGCAC
* ** * *
224899426 TACGTGTGCGATTTGCTATAGCTC
1 TATGTGTGCGATTCACTATGGCAC
224899450 TATGTGTGCGA
1 TATGTGTGCGA
224899461 ACATAATAAG
Statistics
Matches: 192, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
23 25 0.13
24 165 0.86
25 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGTGTGCGATTCACTATGGCAC
Found at i:224906520 original size:2 final size:2
Alignment explanation
Indices: 224906513--224906542 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
224906503 ATCGGGTATG
224906513 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
224906543 AGTATGCCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:224915263 original size:38 final size:39
Alignment explanation
Indices: 224915211--224915353 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
224915201 GAATGTTCGA
224915211 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
224915250 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
224915288 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
224915327 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
224915354 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:224915299 original size:77 final size:79
Alignment explanation
Indices: 224915212--224915393 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
224915202 AATGTTCGAG
224915212 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
224915275 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
224915289 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
224915354 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
224915368 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
224915394 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:224920616 original size:25 final size:25
Alignment explanation
Indices: 224920554--224920621 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
224920544 TACTGAATGT
*
224920554 AGCTCGTGAGAGCTTACCGATTCTC
1 AGCTCCTGAGAGCTTACCGATTCTC
* *
224920579 AGCT-CTTATGAGCTTACTGATT-TAC
1 AGCTCCTGA-GAGCTTACCGATTCT-C
*
224920604 AGCTCCTGAGAGCATACC
1 AGCTCCTGAGAGCTTACC
224920622 AGTTCATAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
24 3 0.09
25 28 0.82
26 3 0.09
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (25 bp):
AGCTCCTGAGAGCTTACCGATTCTC
Found at i:224925983 original size:29 final size:29
Alignment explanation
Indices: 224925950--224926080 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
224925940 GTGACGAGAT
224925950 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
224925979 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
224926008 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
224926037 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
224926066 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
224926081 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:224941663 original size:79 final size:79
Alignment explanation
Indices: 224941516--224941686 Score: 209
Period size: 79 Copynumber: 2.2 Consensus size: 79
224941506 TCTTCAAAAT
* * * ** * *
224941516 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTGACTTGCACA
1 TTAGCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGAATATAATCACTAGCACA
*
224941581 AATGCCTTCGGGTC
66 AATGCCTTCGGGAC
** * *
224941595 TTAGCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGAATATAATCACTAGCAT
1 TTAGCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGAATATAATCACTAGCAC
224941659 AAATGCCTTCGGGAC
65 AAATGCCTTCGGGAC
224941674 TTAGCCTGGATAT
1 TTAGCC-GGATAT
224941687 CATTCAAATG
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 70 0.90
80 8 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
TTAGCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGAATATAATCACTAGCACA
AATGCCTTCGGGAC
Found at i:224941664 original size:40 final size:40
Alignment explanation
Indices: 224941516--224941686 Score: 177
Period size: 40 Copynumber: 4.3 Consensus size: 40
224941506 TCTTCAAAAT
* * *
224941516 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
224941555 TTAACCCGGATTTGGTGACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
224941595 TTAG-CCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* * *
224941634 TTAGCCCGAATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
*
224941674 TTAGCCTGGATAT
1 TTAGCCCGGATAT
224941687 CATTCAAATG
Statistics
Matches: 105, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
39 35 0.33
40 69 0.66
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:224949642 original size:40 final size:40
Alignment explanation
Indices: 224949593--224949760 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
224949583 TCTTCGGAAT
* * *
224949593 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
224949632 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
224949672 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
224949712 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
224949752 TTAGCCCGG
1 TTAGCCCGG
224949761 TATCATTCAA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:224958281 original size:46 final size:45
Alignment explanation
Indices: 224958231--224958402 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
224958221 TGGTTGAGCA
224958231 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
224958277 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
224958323 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
224958369 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
224958403 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:224958385 original size:92 final size:92
Alignment explanation
Indices: 224958228--224958397 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
224958218 GGATGGTTGA
* *
224958228 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
224958293 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
224958320 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
224958385 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
224958398 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:224965839 original size:46 final size:45
Alignment explanation
Indices: 224965789--224965958 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
224965779 TGGTTGAGCA
224965789 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
224965835 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* * *
224965880 CATCCGAATTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*
224965928 -CC-AGCTCGTTGAGTTGAGT-CGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
224965959 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 14, Indels: 21
0.74 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 15 0.15
44 15 0.15
45 5 0.05
46 29 0.29
47 27 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:224967950 original size:41 final size:43
Alignment explanation
Indices: 224967895--224967974 Score: 112
Period size: 41 Copynumber: 1.9 Consensus size: 43
224967885 TAATCAACTA
* *
224967895 TCGATGCCACTGTCC-CGACA-GGATCTTACAC-TAAATCATAT
1 TCGATGCCAATGTCCAAGACATGG-TCTTACACGTAAATCATAT
224967936 TCGATGCCAATGTCCAAGACATGGTCTTACACGTAAATC
1 TCGATGCCAATGTCCAAGACATGGTCTTACACGTAAATC
224967975 TCAAATCGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
41 14 0.41
42 12 0.35
43 8 0.24
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
TCGATGCCAATGTCCAAGACATGGTCTTACACGTAAATCATAT
Found at i:224967987 original size:44 final size:41
Alignment explanation
Indices: 224967894--224967994 Score: 107
Period size: 44 Copynumber: 2.4 Consensus size: 41
224967884 GTAATCAACT
* *
224967894 ATCGATGCCACTGTCCCGACAGGATCTTACACTAAATCATA
1 ATCGATGCCAATGTCCAGACAGGATCTTACACTAAATCATA
*
224967935 TTCGATGCCAATGTCCAAGACATGG-TCTTACACGTAAATC-TCAA
1 ATCGATGCCAATGTCC-AGACA-GGATCTTACAC-TAAATCAT--A
*
224967979 ATCGATGCCAACGTCC
1 ATCGATGCCAATGTCC
224967995 TAAAGGTGGT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
41 14 0.28
42 13 0.26
43 8 0.16
44 15 0.30
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (41 bp):
ATCGATGCCAATGTCCAGACAGGATCTTACACTAAATCATA
Found at i:224970072 original size:28 final size:28
Alignment explanation
Indices: 224970041--224970095 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
224970031 CAATCAACAG
224970041 TAAGTATTTTTCCCAACTGCCCTCAAAC
1 TAAGTATTTTTCCCAACTGCCCTCAAAC
224970069 TAAGTATTTTTCCCAACTGCCCTCAAA
1 TAAGTATTTTTCCCAACTGCCCTCAAA
224970096 ATCTAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (28 bp):
TAAGTATTTTTCCCAACTGCCCTCAAAC
Found at i:224975018 original size:13 final size:13
Alignment explanation
Indices: 224975000--224975024 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
224974990 CTTAGGGTTG
224975000 TTTTTCCTCTCTT
1 TTTTTCCTCTCTT
224975013 TTTTTCCTCTCT
1 TTTTTCCTCTCT
224975025 AGCCGAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTTCCTCTCTT
Found at i:224976160 original size:27 final size:27
Alignment explanation
Indices: 224976094--224976150 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
224976084 ACGTAGAACA
*
224976094 CGAAATGACCCTAAAGAACAAAATTAC
1 CGAAATTACCCTAAAGAACAAAATTAC
* *
224976121 CGAAATTACCCTATAGAGCAAAATTAC
1 CGAAATTACCCTAAAGAACAAAATTAC
224976148 CGA
1 CGA
224976151 TATACCCCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.47, C:0.23, G:0.12, T:0.18
Consensus pattern (27 bp):
CGAAATTACCCTAAAGAACAAAATTAC
Found at i:224978151 original size:40 final size:40
Alignment explanation
Indices: 224978074--224978289 Score: 294
Period size: 40 Copynumber: 5.4 Consensus size: 40
224978064 AAACCAAGTA
* *
224978074 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
224978113 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
224978153 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
224978193 CCTTCGGGACTTAGCCCGGATAAAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
224978233 CCTTTGGGACTTAGCCTGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
224978273 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
224978290 AGTTATCATC
Statistics
Matches: 157, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.10
40 142 0.90
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:224981796 original size:29 final size:29
Alignment explanation
Indices: 224981763--224981836 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
224981753 CCTTCGAGCT
224981763 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
224981792 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
224981821 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
224981837 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:224981797 original size:58 final size:58
Alignment explanation
Indices: 224981704--224981836 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
224981694 ATACTCGATT
* * * * *
224981704 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
224981762 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
224981820 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
224981837 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:224988538 original size:29 final size:29
Alignment explanation
Indices: 224988476--224988605 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
224988466 ATAGTGAATC
224988476 CGCACACTTAGTGCTATATA-TTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
224988504 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
224988533 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
224988562 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
224988591 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
224988606 GTACAATTTT
Statistics
Matches: 100, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
28 20 0.20
29 80 0.80
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:224992385 original size:29 final size:29
Alignment explanation
Indices: 224992377--224992488 Score: 206
Period size: 29 Copynumber: 3.9 Consensus size: 29
224992367 GTGCTGTATT
**
224992377 TTTCCAGCTTGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
224992406 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
224992435 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
224992464 TTTCCAGCACGCACACTTAGTGCCA
1 TTTCCAGCACGCACACTTAGTGCCA
224992489 ATCTCGTCAC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCATATA
Found at i:224992419 original size:58 final size:58
Alignment explanation
Indices: 224992357--224992488 Score: 183
Period size: 58 Copynumber: 2.3 Consensus size: 58
224992347 CCTCCGAGCT
** * **
224992357 CGCACACCCAGTGCTGTATTTTTCCAGCTTGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
**
224992415 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
**
224992473 CGCACACTTAGTGCCA
1 CGCACACCCAGTGCCA
224992489 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 67 1.00
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (58 bp):
CGCACACCCAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
Done.