Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 714 of 770
Found at i:225706803 original size:49 final size:49
Alignment explanation
Indices: 225706735--225706857 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
225706725 TACATATATG
*
225706735 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
225706784 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
225706833 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
225706858 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:225707003 original size:37 final size:37
Alignment explanation
Indices: 225706960--225707037 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
225706950 GTTCCGGGCG
225706960 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
225706997 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
225707034 AGAC
1 AGAC
225707038 TTCTTTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:225709119 original size:29 final size:29
Alignment explanation
Indices: 225709052--225709361 Score: 496
Period size: 29 Copynumber: 10.7 Consensus size: 29
225709042 CGAATGATTA
* * *
225709052 GAGGCACTGTGTGTGC-AAATTCCATTAACC
1 GAGGCACTGTGTGTGCGAGA-T-CAGTAATC
*
225709082 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
*
225709111 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225709140 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225709169 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225709198 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225709227 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225709256 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* * *
225709285 GAGGCACTATGTGTGCGAAATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* *
225709314 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
*
225709343 GAGGCACTGTGTGTACGAG
1 GAGGCACTGTGTGTGCGAG
225709362 TTTTTCAACA
Statistics
Matches: 268, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
29 250 0.93
30 16 0.06
31 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
GAGGCACTGTGTGTGCGAGATCAGTAATC
Found at i:225709943 original size:40 final size:41
Alignment explanation
Indices: 225709845--225709943 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
225709835 TTCGAATGGT
* ** * *
225709845 ATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCTAAATCACTAA
225709886 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGC-AAATCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCTAAATCACTA-A
225709927 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
225709944 GAACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 20 0.40
41 27 0.54
42 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCTAAATCACTAA
Found at i:225713114 original size:49 final size:49
Alignment explanation
Indices: 225713046--225713168 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
225713036 TACATATATG
*
225713046 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
225713095 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
225713144 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
225713169 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:225713314 original size:37 final size:37
Alignment explanation
Indices: 225713271--225713348 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
225713261 GTTCCGGGCG
225713271 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
225713308 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
225713345 AGAC
1 AGAC
225713349 TTCTTTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:225715431 original size:29 final size:29
Alignment explanation
Indices: 225715364--225715671 Score: 487
Period size: 29 Copynumber: 10.7 Consensus size: 29
225715354 CGAATGATTA
* * *
225715364 GAGGCACTGTGTGTGC-AAATTCCATTAACC
1 GAGGCACTGTGTGTGCGAGA-T-CAGTAATC
*
225715394 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
*
225715423 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225715452 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225715481 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225715510 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225715539 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225715568 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* *
225715597 GAGGCACTATGTGTGC--GATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* *
225715624 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
*
225715653 GAGGCACTGTGTGTACGAG
1 GAGGCACTGTGTGTGCGAG
225715672 TTTTTCAACA
Statistics
Matches: 266, Mismatches: 9, Indels: 7
0.94 0.03 0.02
Matches are distributed among these distances:
27 26 0.10
29 222 0.83
30 16 0.06
31 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
GAGGCACTGTGTGTGCGAGATCAGTAATC
Found at i:225716253 original size:40 final size:41
Alignment explanation
Indices: 225716155--225716253 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
225716145 TTCGAATGGT
* ** * *
225716155 ATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCTAAATCACTAA
225716196 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGC-AAATCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCTAAATCACTA-A
225716237 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
225716254 GAACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 20 0.40
41 27 0.54
42 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCTAAATCACTAA
Found at i:225719423 original size:49 final size:49
Alignment explanation
Indices: 225719355--225719477 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
225719345 TACATATATG
*
225719355 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
225719404 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
225719453 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
225719478 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:225719623 original size:37 final size:37
Alignment explanation
Indices: 225719580--225719657 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
225719570 GTTCCGGGCG
225719580 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
225719617 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
225719654 AGAC
1 AGAC
225719658 TTCTTTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:225721744 original size:29 final size:29
Alignment explanation
Indices: 225721673--225722121 Score: 741
Period size: 29 Copynumber: 15.7 Consensus size: 29
225721663 CGAATGATTA
* * *
225721673 GAGGCACTGTGTGTGC-AAATTCCATTAACC
1 GAGGCACTGTGTGTGCGAGA-T-CAGTAATC
*
225721703 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225721732 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225721761 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225721790 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225721819 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225721848 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225721877 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225721906 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225721935 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225721964 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225721993 GAGGCACTGTGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
225722022 GAGGCACTGTGTGTGC--G---AG-AATC
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* * *
225722045 GAGGCACTATGTGTGCGAAATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
* *
225722074 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATCAGTAATC
*
225722103 GAGGCACTGTGTGTACGAG
1 GAGGCACTGTGTGTGCGAG
225722122 TTTTTCAACA
Statistics
Matches: 401, Mismatches: 11, Indels: 15
0.94 0.03 0.04
Matches are distributed among these distances:
23 19 0.05
24 2 0.00
27 1 0.00
28 2 0.00
29 359 0.90
30 16 0.04
31 2 0.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (29 bp):
GAGGCACTGTGTGTGCGAGATCAGTAATC
Found at i:225725872 original size:49 final size:49
Alignment explanation
Indices: 225725804--225725926 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
225725794 TACATATATG
*
225725804 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
225725853 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
225725902 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
225725927 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:225726072 original size:37 final size:37
Alignment explanation
Indices: 225726029--225726106 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
225726019 GTTCCGGGCG
225726029 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
225726066 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
225726103 AGAC
1 AGAC
225726107 TTCTTTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:225730077 original size:29 final size:29
Alignment explanation
Indices: 225730021--225730111 Score: 82
Period size: 28 Copynumber: 3.2 Consensus size: 29
225730011 GCATGACTAG
*
225730021 GAATGTGATTGGGGCCT-ATAGGCCATAT
1 GAATGTGATTTGGGCCTAATAGGCCATAT
* **
225730049 GAATGTGATTTGGGCCTAATGGGTTATAT
1 GAATGTGATTTGGGCCTAATAGGCCATAT
*
225730078 GAAT-TAGA-TTGGGCCTAGT-GGACCATAT
1 GAATGT-GATTTGGGCCTAATAGG-CCATAT
*
225730106 GCATGT
1 GAATGT
225730112 TTATAGACAT
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
27 2 0.04
28 34 0.67
29 15 0.29
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.32
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATAGGCCATAT
Found at i:225733645 original size:35 final size:35
Alignment explanation
Indices: 225733599--225733668 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
225733589 TCGATAGGTA
225733599 CACTTGCCTTCATCGTGATAATAGTTAGTTTCAAG
1 CACTTGCCTTCATCGTGATAATAGTTAGTTTCAAG
225733634 CACTTGCCTTCATCGTGATAATAGTTAGTTTCAAG
1 CACTTGCCTTCATCGTGATAATAGTTAGTTTCAAG
225733669 AACGATTCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (35 bp):
CACTTGCCTTCATCGTGATAATAGTTAGTTTCAAG
Found at i:225737226 original size:27 final size:27
Alignment explanation
Indices: 225737196--225737364 Score: 198
Period size: 27 Copynumber: 6.3 Consensus size: 27
225737186 GGGGCAAAAT
* * *
225737196 GGTAATAT-TACCCCACAAGGGTATCTC
1 GGTAAT-TCTACCCTACAGGGGTATTTC
225737223 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
225737250 GGTAATTGTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
225737277 AATAATTCTATCCC-ACAGGGGTATTTC
1 GGTAATTCTA-CCCTACAGGGGTATTTC
* *
225737304 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
225737331 AATAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
225737358 GATAATT
1 GGTAATT
225737365 TTGTAAATCG
Statistics
Matches: 122, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.03
27 115 0.94
28 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:225737254 original size:54 final size:54
Alignment explanation
Indices: 225737196--225737364 Score: 225
Period size: 54 Copynumber: 3.1 Consensus size: 54
225737186 GGGGCAAAAT
* * **
225737196 GGTAATAT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAAT-TCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
* *
225737250 GGTAATTGTACCCTACAGGGGTATTTCAATAATTCTATCCC-ACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTA-CCCTACAGGGGTATTTC
* *
225737304 GGTAATTCTACCCTACAAGGGTATTTTAATAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
*
225737358 GATAATT
1 GGTAATT
225737365 TTGTAAATCG
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
53 3 0.03
54 96 0.94
55 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
Found at i:225737320 original size:81 final size:81
Alignment explanation
Indices: 225737207--225737364 Score: 235
Period size: 81 Copynumber: 2.0 Consensus size: 81
225737197 GTAATATTAC
* ** *
225737207 CCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTGTACCCTACAGGGGT
1 CCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGT
225737272 ATTTCAATAATTCTAT
66 ATTTCAATAATTCTAT
* * * *
225737288 CCCACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAATAATTCTATCCTACAGGGGT
1 CCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGT
*
225737353 ATTTCGATAATT
66 ATTTCAATAATT
225737365 TTGTAAATCG
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (81 bp):
CCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGT
ATTTCAATAATTCTAT
Found at i:225737388 original size:81 final size:81
Alignment explanation
Indices: 225737222--225737394 Score: 188
Period size: 81 Copynumber: 2.1 Consensus size: 81
225737212 AAGGGTATCT
* ** *
225737222 CGGTAATTCTACCCTACAGGGGTATTTCGGTAATTGTACCCTACAGGGGTATTTCAATAATTCTA
1 CGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAATAATTCTA
** ***
225737287 TCCCACAGGGGTATTT
66 TCAAACAGGGGTAAAA
* * * * *
225737303 CGGTAATTCTACCCTACAAGGGTATTTTAATAATTCTATCCTACAGGGGTATTTCGATAATTTTG
1 CGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAATAATTCTA
225737368 T-AAATC-GAGGGTAAAA
66 TCAAA-CAG-GGGTAAAA
225737384 CGGTAATTCTA
1 CGGTAATTCTA
225737395 TAAATTAAGG
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 2 0.03
81 74 0.97
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (81 bp):
CGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAATAATTCTA
TCAAACAGGGGTAAAA
Found at i:225737434 original size:27 final size:27
Alignment explanation
Indices: 225737402--225737552 Score: 106
Period size: 27 Copynumber: 5.6 Consensus size: 27
225737392 CTATAAATTA
* *
225737402 AGGGTACTTTGGTAATTTTACAAGTTG
1 AGGGTATTTTAGTAATTTTACAAGTTG
* * * *
225737429 AAGGTATTTCAGTAATTTTACAGGTCG
1 AGGGTATTTTAGTAATTTTACAAGTTG
* * *
225737456 AGGGTATTTTAATAATTTTACAA-ATC
1 AGGGTATTTTAGTAATTTTACAAGTTG
* ****
225737482 AGGGGTATTTTGGTAATTTTACAAACCA
1 A-GGGTATTTTAGTAATTTTACAAGTTG
* * ****
225737510 AGGGTATTTTCGTAATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAGTTG
225737537 AGGGTATTTTAGTAAT
1 AGGGTATTTTAGTAAT
225737553 CTACAGGGGC
Statistics
Matches: 101, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 99 0.98
28 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAGTTG
Found at i:225737489 original size:54 final size:54
Alignment explanation
Indices: 225737431--225737552 Score: 145
Period size: 54 Copynumber: 2.3 Consensus size: 54
225737421 ACAAGTTGAA
* *** * * *
225737431 GGTATTTCAGTAATTTTACAGGTCGAGGGTATTTTAATAATTTTACAAATCAGG
1 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAATAATTTTACAAACCAAG
* ** *
225737485 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTCGTAATTTTATAAACCAAG
1 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAATAATTTTACAAACCAAG
225737539 GGTATTTTAGTAAT
1 GGTATTTTAGTAAT
225737553 CTACAGGGGC
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAATAATTTTACAAACCAAG
Found at i:225742832 original size:27 final size:26
Alignment explanation
Indices: 225742784--225742835 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
225742774 GCGAGGCTGC
*
225742784 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
225742810 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
225742836 TTGCAGCGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:225743458 original size:26 final size:27
Alignment explanation
Indices: 225743429--225743496 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
225743419 TCACACAAGT
225743429 TAGTCATTTAAGCA-C-GAGGGGCAAAA
1 TAGTCATTTAA-CACCTGAGGGGCAAAA
*
225743455 TAGTCATTTAACACCTTAGGGGCAAAA
1 TAGTCATTTAACACCTGAGGGGCAAAA
* * *
225743482 TGGTAATTTTACACC
1 TAGTCATTTAACACC
225743497 ACAAGGGTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.06
26 12 0.33
27 22 0.61
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
TAGTCATTTAACACCTGAGGGGCAAAA
Found at i:225743531 original size:27 final size:27
Alignment explanation
Indices: 225743512--225743651 Score: 192
Period size: 27 Copynumber: 5.2 Consensus size: 27
225743502 GGTATCTTGG
*
225743512 TAATTCTACCTTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
225743539 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
225743566 TAATTCTATCCTACAGGGGTATTTCCG-
1 TAATTCTACCCTACAGGGGTATTT-CGA
* *
225743593 TAAATCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
225743620 TAATTCTATCCTATAAGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
225743647 TAATT
1 TAATT
225743652 TTGTAAAACG
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:225743559 original size:54 final size:55
Alignment explanation
Indices: 225743512--225743651 Score: 218
Period size: 54 Copynumber: 2.6 Consensus size: 55
225743502 GGTATCTTGG
225743512 TAATTCTA-CCTTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTATCCTTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAA
*
225743566 TAATTCTATCC-TACAGGGGTATTTCCG-TAAATCTACCCTACAGGGGTATTTCAA
1 TAATTCTATCCTTACAGGGGTATTT-CGATAATTCTACCCTACAGGGGTATTTCAA
225743620 TAATTCTATCCTATA-A-GGGTATTTCGATAATT
1 TAATTCTATCCT-TACAGGGGTATTTCGATAATT
225743652 TTGTAAAACG
Statistics
Matches: 79, Mismatches: 2, Indels: 10
0.87 0.02 0.11
Matches are distributed among these distances:
53 2 0.03
54 70 0.89
55 5 0.06
56 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (55 bp):
TAATTCTATCCTTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAA
Found at i:225743723 original size:27 final size:27
Alignment explanation
Indices: 225743693--225743792 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
225743683 AAATTGTGGG
*
225743693 TATTTCAGTAATTTTACAAGTGGAGGA
1 TATTTCAGTAATTTTACAAGTCGAGGA
* *
225743720 TATTTCAGTAATTTTACAGGTCGAGGG
1 TATTTCAGTAATTTTACAAGTCGAGGA
* * * *
225743747 TATTTCAATAATTTCACAAATC-AGGGG
1 TATTTCAGTAATTTTACAAGTCGA-GGA
**
225743774 TATTTTGGTAATTTTACAA
1 TATTTCAGTAATTTTACAA
225743793 ACTAGGGGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.02
27 60 0.98
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
TATTTCAGTAATTTTACAAGTCGAGGA
Found at i:225743793 original size:27 final size:27
Alignment explanation
Indices: 225743755--225743867 Score: 156
Period size: 27 Copynumber: 4.2 Consensus size: 27
225743745 GGTATTTCAA
*
225743755 TAATTTCACAAA-TCAGGGGTATTTTGG
1 TAATTTTACAAACT-AGGGGTATTTTGG
225743782 TAATTTTACAAACTAGGGGTATTTTGG
1 TAATTTTACAAACTAGGGGTATTTTGG
*
225743809 TAATTTTACAAACTAGGGGTATTTTCG
1 TAATTTTACAAACTAGGGGTATTTTGG
* * * *
225743836 TAATTTTATAAACCAAGGGTATTTTTG
1 TAATTTTACAAACTAGGGGTATTTTGG
225743863 TAATT
1 TAATT
225743868 CTACCCTATA
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 78 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.42
Consensus pattern (27 bp):
TAATTTTACAAACTAGGGGTATTTTGG
Found at i:225743802 original size:54 final size:54
Alignment explanation
Indices: 225743743--225743859 Score: 146
Period size: 54 Copynumber: 2.2 Consensus size: 54
225743733 TTACAGGTCG
* *
225743743 AGGGTATTTCAATAATTTCACAAA-TCAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTCAATAATTTCACAAACT-AGGGGTATTTTCGTAATTTTACAAACCA
* *** * *
225743797 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTCGTAATTTTATAAACCA
1 AGGGTATTTCAATAATTTCACAAACTAGGGGTATTTTCGTAATTTTACAAACCA
225743851 AGGGTATTT
1 AGGGTATTT
225743860 TTGTAATTCT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 52 0.98
55 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
AGGGTATTTCAATAATTTCACAAACTAGGGGTATTTTCGTAATTTTACAAACCA
Found at i:225750493 original size:48 final size:48
Alignment explanation
Indices: 225750431--225750921 Score: 837
Period size: 48 Copynumber: 10.3 Consensus size: 48
225750421 TATATATGTG
*
225750431 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
225750479 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGGTATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
225750527 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTACA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
225750575 TGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
225750623 TGTGGTAAAGCCGAATGGCTAAT-TGAAATA-GATATGAGATATGTGTA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATG-TATGAGATATGTATA
* *
225750670 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
225750718 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
225750766 T-TGTGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATATGTATA
1 TGTG-GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
225750814 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTACA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
225750862 TGTGGTAAAGCCGAATGGCTAATGTGAAATGTG-ATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
225750909 TGTGGTAAAGCCG
1 TGTGGTAAAGCCG
225750922 NNNNNNNNNN
Statistics
Matches: 418, Mismatches: 20, Indels: 11
0.93 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 70 0.17
48 344 0.82
49 3 0.01
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:225750851 original size:239 final size:239
Alignment explanation
Indices: 225750422--225750921 Score: 846
Period size: 239 Copynumber: 2.1 Consensus size: 239
225750412 CAAGATAAAT
* *
225750422 ATATATGTGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
* *
225750487 AGCCGAATGGCTAGTGTGAAATATGTATGAGGTATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
*
225750552 GAAATATGTATGAGATATGTACATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATA
131 GAAATATGTATGAGATATGTACATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATA
*
225750617 TGTATATGTGGTAAAGCCGAATGGCTAAT-TGAAATAGAT-ATGAG
196 TGTACATGTGGTAAAGCCGAATGGCTAATGTGAAAT-G-TGATGAG
*
225750661 ATATGTGTATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGAGATATGTATATGTGGTA
1 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATAT-ATATGAGATATGTATATGTGGTA
225750725 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT-TGTGTAAAGCCGAATGGCTAAT
65 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG-GTAAAGCCGAATGGCTAAT
* *
225750789 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
129 GTGAAATATGTATGAGATATGTACATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
225750854 TATGTACATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGATGAG
194 TATGTACATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGATGAG
*
225750900 ATATGTATATGTGGTAAAGCCG
1 ATATGTGTATGTGGTAAAGCCG
225750922 NNNNNNNNNN
Statistics
Matches: 247, Mismatches: 10, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
238 3 0.01
239 237 0.96
240 7 0.03
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (239 bp):
ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
GAAATATGTATGAGATATGTACATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATA
TGTACATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGATGAG
Found at i:225758918 original size:40 final size:40
Alignment explanation
Indices: 225758791--225758920 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
225758781 ATGCTGGAAA
* *
225758791 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
225758831 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
225758871 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
225758911 TTATATCCGG
1 TTATATCCGG
225758921 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:225766828 original size:124 final size:124
Alignment explanation
Indices: 225766606--225766830 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
225766596 GAATTATGTG
* * * * * * *
225766606 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
225766671 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
225766730 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
225766795 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTAGAAATTATAT
225766831 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 1 0.01
124 87 0.99
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.34
Consensus pattern (124 bp):
AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:225766952 original size:40 final size:40
Alignment explanation
Indices: 225766825--225766954 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
225766815 ATGCTGGAAA
* *
225766825 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
225766865 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
225766905 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
225766945 TTATATCCGG
1 TTATATCCGG
225766955 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:225769937 original size:30 final size:30
Alignment explanation
Indices: 225769893--225769981 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
225769883 CAAAGATAAC
225769893 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
225769922 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
225769952 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
225769982 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:225769941 original size:15 final size:15
Alignment explanation
Indices: 225769893--225769972 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
225769883 CAAAGATAAC
*
225769893 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
225769907 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
225769922 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
225769937 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
225769952 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
225769967 AAGAAA
1 AAGAAA
225769973 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:225769981 original size:15 final size:15
Alignment explanation
Indices: 225769904--225769981 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
225769894 AGAAAACCGA
225769904 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
225769919 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
225769933 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
225769948 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
225769964 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
225769979 ATA
1 ATA
225769982 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:225773039 original size:93 final size:93
Alignment explanation
Indices: 225772927--225773098 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
225772917 GCCCATAAGT
* *
225772927 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
225772992 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
225773020 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
225773085 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
225773099 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:225773094 original size:46 final size:46
Alignment explanation
Indices: 225772919--225773094 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
225772909 TGTAACCCGC
* * *
225772919 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
225772965 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
225773015 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
225773058 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
225773095 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:225774697 original size:37 final size:37
Alignment explanation
Indices: 225774647--225774722 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
225774637 ATACACACAT
225774647 ATAGGTGCAAGGCCGAATTCTCAAGGTGTTCACAACC
1 ATAGGTGCAAGGCCGAATTCTCAAGGTGTTCACAACC
225774684 ATAGGTGCAAGGCCGAATTCTCAAGGTGTTCACAACC
1 ATAGGTGCAAGGCCGAATTCTCAAGGTGTTCACAACC
225774721 AT
1 AT
225774723 CTAAAACACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (37 bp):
ATAGGTGCAAGGCCGAATTCTCAAGGTGTTCACAACC
Found at i:225774762 original size:15 final size:15
Alignment explanation
Indices: 225774742--225774772 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
225774732 AAATTTTTTC
225774742 AAGTAACAAGCATAA
1 AAGTAACAAGCATAA
225774757 AAGTAACAAGCATAA
1 AAGTAACAAGCATAA
225774772 A
1 A
225774773 TCATGCTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.13, G:0.13, T:0.13
Consensus pattern (15 bp):
AAGTAACAAGCATAA
Found at i:225778028 original size:27 final size:28
Alignment explanation
Indices: 225777972--225778041 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
225777962 AAACTTGTAC
225777972 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
225778000 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
225778027 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
225778042 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:225778052 original size:27 final size:27
Alignment explanation
Indices: 225777972--225778053 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
225777962 AAACTTGTAC
* *
225777972 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
225778000 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
225778027 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
225778054 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:225781681 original size:29 final size:29
Alignment explanation
Indices: 225781648--225781808 Score: 250
Period size: 29 Copynumber: 5.6 Consensus size: 29
225781638 CCTCCGAACT
** * * *
225781648 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
225781677 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
225781706 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
225781735 CGCACACTTAGTGCCATATATCTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
225781764 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
225781793 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
225781809 ATCTCGTCAC
Statistics
Matches: 121, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 121 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:225781710 original size:87 final size:87
Alignment explanation
Indices: 225781590--225781808 Score: 235
Period size: 87 Copynumber: 2.5 Consensus size: 87
225781580 TACTCGATTT
** * * ** * *
225781590 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATA-CCCTCCGAACTCGCAC
1 CGCACACTTAGTGCCAAAT-ATTTCCAGCACGCACACTTAGTGCCATATACCTCC-AACACGCAC
* * * *
225781653 ACCCAGTGCCGTATTTTTCCAGCT
64 ACCCAGTGCCATATATCTCCAGCA
* ** *
225781677 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
**
225781742 TTAGTGCCATATATCTCCAGCA
66 CCAGTGCCATATATCTCCAGCA
*
225781764 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCA
225781809 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
86 4 0.04
87 103 0.94
88 3 0.03
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (87 bp):
CGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATACCTCCAACACGCACAC
CCAGTGCCATATATCTCCAGCA
Found at i:225789345 original size:27 final size:28
Alignment explanation
Indices: 225789289--225789358 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
225789279 AAACTTGTAC
225789289 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
225789317 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
225789344 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
225789359 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:225789369 original size:27 final size:27
Alignment explanation
Indices: 225789289--225789370 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
225789279 AAACTTGTAC
* *
225789289 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
225789317 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
225789344 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
225789371 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:225798317 original size:29 final size:29
Alignment explanation
Indices: 225798283--225798385 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
225798273 TAATCAGCCG
** *
225798283 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
225798312 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
225798341 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
225798370 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
225798386 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:225804077 original size:31 final size:31
Alignment explanation
Indices: 225804039--225804099 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
225804029 TTTCATATTT
225804039 CATATTTCATAACACTGGGCCGAAGCCTTTC
1 CATATTTCATAACACTGGGCCGAAGCCTTTC
**
225804070 CATATTTCATATTACTGGGCCGAAGCCTTT
1 CATATTTCATAACACTGGGCCGAAGCCTTT
225804100 ACTGTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATTTCATAACACTGGGCCGAAGCCTTTC
Found at i:225805859 original size:31 final size:31
Alignment explanation
Indices: 225805821--225805881 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
225805811 TTTCATATTT
225805821 CATATTTCATAACACTGGGCCGAAGCCTTTC
1 CATATTTCATAACACTGGGCCGAAGCCTTTC
**
225805852 CATATTTCATATTACTGGGCCGAAGCCTTT
1 CATATTTCATAACACTGGGCCGAAGCCTTT
225805882 ACTGTAAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATTTCATAACACTGGGCCGAAGCCTTTC
Found at i:225808510 original size:45 final size:45
Alignment explanation
Indices: 225808461--225808632 Score: 141
Period size: 45 Copynumber: 3.7 Consensus size: 45
225808451 ACATTTTGTA
* *
225808461 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTTATGTC-CCGG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TATGTCACAGG
* * * ** **
225808506 GCCGATGTATGTCCCATACATGTCTTACACTAGC-ACTCGTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTA-T-GTCACAGG
* * *
225808552 GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTCACTATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATGTCAC-A-G-G
*
225808602 GCCGATGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
225808633 AGCCCACAAT
Statistics
Matches: 98, Mismatches: 20, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 33 0.34
46 6 0.06
47 14 0.14
48 24 0.24
49 13 0.13
50 6 0.06
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.30
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATGTCACAGG
Found at i:225817617 original size:39 final size:39
Alignment explanation
Indices: 225817573--225817887 Score: 531
Period size: 39 Copynumber: 8.1 Consensus size: 39
225817563 ATGCAAGACA
225817573 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
225817612 CTGGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
225817651 CTGGAAATATATCAGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
225817690 CTGGAAATGTATCCGGGCTAAAGTCCCGCAAGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
225817729 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
225817768 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
225817807 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
225817846 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGATTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
225817885 CTG
1 CTG
225817888 ATAATATAAT
Statistics
Matches: 257, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 257 1.00
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:225831038 original size:123 final size:120
Alignment explanation
Indices: 225830821--225831039 Score: 280
Period size: 123 Copynumber: 1.8 Consensus size: 120
225830811 AATTATGTGG
* * * *
225830821 AATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATCCCGGGCTA
1 AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATCCCGGGCTA
* * * **
225830886 AGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 AGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
*
225830941 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATAT-CCG
1 AATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAAT-A-ATCCCG
*
225831004 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
61 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
225831040 TCCGGGTTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
120 15 0.18
122 29 0.35
123 37 0.45
124 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (120 bp):
AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATCCCGGGCTA
AGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:225831083 original size:40 final size:40
Alignment explanation
Indices: 225830998--225831148 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
225830988 AATTGAATGA
* * * *
225830998 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
225831038 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
225831079 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
225831118 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
225831149 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:225831162 original size:40 final size:40
Alignment explanation
Indices: 225831035--225831164 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
225831025 ATGCTGGAAA
* * *
225831035 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
225831075 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
225831115 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
225831155 TTATATCCGG
1 TTATATCCGG
225831165 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:225831163 original size:80 final size:80
Alignment explanation
Indices: 225830997--225831164 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
225830987 AAATTGAATG
* *
225830997 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
225831062 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
225831077 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
225831140 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
225831157 ATATCCGG
1 ATATCCGG
225831165 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:225836730 original size:40 final size:39
Alignment explanation
Indices: 225836686--225836770 Score: 116
Period size: 39 Copynumber: 2.2 Consensus size: 39
225836676 AAGTGACTAT
*
225836686 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAA
1 ATCCGGACTAAG-CCCGAAGGCATTCGTGCGAGTTAATAA
* * *
225836726 ATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACTAAGCCCGAAGGCATTCGTGCGAGTTAATAA
*
225836765 ACCCGG
1 ATCCGG
225836771 GGCATTCGTG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 29 0.73
40 11 0.28
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (39 bp):
ATCCGGACTAAGCCCGAAGGCATTCGTGCGAGTTAATAA
Found at i:225836749 original size:39 final size:40
Alignment explanation
Indices: 225836647--225836771 Score: 146
Period size: 40 Copynumber: 3.1 Consensus size: 40
225836637 TTGAATGATG
* * * *
225836647 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
225836687 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
225836727 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
*
225836766 CCCGGG
1 TCCGGG
225836772 GCATTCGTGC
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 30 0.42
40 35 0.49
41 6 0.08
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:225838986 original size:15 final size:15
Alignment explanation
Indices: 225838950--225839028 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
225838940 GTATCTTGGG
*
225838950 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
225838965 -CTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
225838979 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
225838994 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
225839009 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
225839023 TTTCTT
1 TTTCTT
225839029 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 22 0.42
15 29 0.55
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:225838992 original size:29 final size:30
Alignment explanation
Indices: 225838941--225839019 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
225838931 CATAGTATCG
* * *
225838941 TATCTTGGGTTTCTTTATCCT-GGACTCTT
1 TATCTTGGATTTCTTTATTCTGGGACTCTC
**
225838970 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGACTCTC
225839000 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
225839020 GGTTTTCTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
28 1 0.02
29 17 0.40
30 23 0.55
31 1 0.02
ACGTcount: A:0.11, C:0.18, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGACTCTC
Found at i:225839011 original size:30 final size:30
Alignment explanation
Indices: 225838941--225839027 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 30
225838931 CATAGTATCG
* * ** *
225838941 TATCTTGGGTTTCTTTATCCT-GGACTCTT
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
225838970 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGTTTCTC
*
225839000 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGGTTTCT
225839028 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
28 1 0.02
29 24 0.49
30 23 0.47
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:225841453 original size:46 final size:46
Alignment explanation
Indices: 225841403--225841578 Score: 228
Period size: 46 Copynumber: 3.8 Consensus size: 46
225841393 TATTTGGGCA
225841403 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
225841449 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
225841496 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
225841542 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
225841579 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
46 73 0.66
47 37 0.34
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:225841558 original size:93 final size:93
Alignment explanation
Indices: 225841399--225841570 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
225841389 TGGATATTTG
* *
225841399 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
225841464 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
225841492 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
225841557 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
225841571 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:225844755 original size:46 final size:46
Alignment explanation
Indices: 225844702--225844875 Score: 228
Period size: 46 Copynumber: 3.8 Consensus size: 46
225844692 TATTTGGGCA
225844702 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * *
225844748 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGA--GATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
225844793 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
225844839 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
225844876 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
44 3 0.03
45 34 0.31
46 70 0.64
47 3 0.03
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:225844853 original size:91 final size:91
Alignment explanation
Indices: 225844698--225844867 Score: 304
Period size: 91 Copynumber: 1.9 Consensus size: 91
225844688 GGGATATTTG
* *
225844698 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
225844763 TTGAGTCCGAGTTCGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGATGTAACTA
* *
225844789 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
225844854 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
225844868 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (91 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGATGTAACTA
Found at i:225856586 original size:40 final size:40
Alignment explanation
Indices: 225856541--225856705 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
225856531 CGGAATATAA
225856541 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
225856581 CCGGATAGAAT-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
225856620 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
225856660 CCGGATATAATTTCCAGCATAATTGTCTTCGGG--TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
225856698 CCGGATAT
1 CCGGATAT
225856706 CATTCAATTT
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
38 13 0.12
39 32 0.31
40 59 0.57
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:225856605 original size:39 final size:40
Alignment explanation
Indices: 225856557--225856666 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
225856547 ATAATCACGT
* *
225856557 GCACAAATGCCTTCGGGTCTTAGCCCGGATAG-A-ATACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
*
225856596 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
*
225856636 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
225856667 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.02
39 32 0.52
40 29 0.47
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (40 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGTAGACACTA
Found at i:225863758 original size:40 final size:39
Alignment explanation
Indices: 225863713--225863841 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
225863703 CGGAATATAA
225863713 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
225863753 CCGGATAGAATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
225863791 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
225863831 CCGGATATAAT
1 CCGGATATAAT
225863842 TTCCAGCATA
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
38 32 0.44
40 41 0.56
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:225863778 original size:38 final size:37
Alignment explanation
Indices: 225863729--225863837 Score: 130
Period size: 38 Copynumber: 2.8 Consensus size: 37
225863719 ATAATCACGT
*
225863729 GCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AATCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGCAA-CTA
*
225863767 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA--TAGCAACTA
*
225863807 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
225863838 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
38 30 0.48
39 2 0.03
40 30 0.48
41 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGCAACTA
Found at i:225863855 original size:40 final size:40
Alignment explanation
Indices: 225863713--225863877 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
225863703 CGGAATATAA
* ** *
225863713 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
*
225863753 CCGGATAGAATCT-C-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * * *
225863791 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* * * *
225863831 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
225863870 CCGGATAT
1 CCGGATAT
225863878 CATTCAATTT
Statistics
Matches: 101, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
38 29 0.29
39 16 0.16
40 56 0.55
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:225866358 original size:32 final size:32
Alignment explanation
Indices: 225866322--225866416 Score: 127
Period size: 32 Copynumber: 3.0 Consensus size: 32
225866312 CAATTGAATC
* *
225866322 TTCGTACATACATGTACCATATTGTACTAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
225866354 TTCGTACATACCTGTACCATATTGTACCAATT
1 TTCGTACATACCTGTACCATATTGTACCAATT
* * * * *
225866386 TCCGTAGATACCTGTATCATCTCGTACCAAT
1 TTCGTACATACCTGTACCATATTGTACCAAT
225866417 CTCATACTCA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (32 bp):
TTCGTACATACCTGTACCATATTGTACCAATT
Found at i:225866525 original size:28 final size:28
Alignment explanation
Indices: 225866494--225866589 Score: 111
Period size: 28 Copynumber: 3.4 Consensus size: 28
225866484 CCTATACCTT
* *
225866494 GCACACTAAGTGTCGTTTTGGATGTTTC
1 GCACACTAAGTGTCATTCTGGATGTTTC
* * * **
225866522 GCACACTAAGTGTCATCCTCGTTACTTC
1 GCACACTAAGTGTCATTCTGGATGTTTC
* *
225866550 GCACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGTCATTCTGGATGTTTC
225866578 GCACACTAAGTG
1 GCACACTAAGTG
225866590 CCATCCCCGA
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTGGATGTTTC
Found at i:225866554 original size:56 final size:56
Alignment explanation
Indices: 225866459--225866620 Score: 184
Period size: 56 Copynumber: 2.9 Consensus size: 56
225866449 TGAATATTCA
* ** * * * *
225866459 ATGTATCGCACA-TTAGATGCCATATCCTATACCTT-GCACACTAAGTGTCGTTTTGG
1 ATGTATCGCACACTAAG-TGCCATCCCCGATA-CTTCGCACACTAAGTGCCATTCTGG
* * * *
225866515 ATGTTTCGCACACTAAGTGTCATCCTCGTTACTTCGCACACTAAGTGCCATTCTGG
1 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCATTCTGG
*
225866571 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACATTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCA
225866621 CATATAATTA
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
55 3 0.03
56 82 0.93
57 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (56 bp):
ATGTATCGCACACTAAGTGCCATCCCCGATACTTCGCACACTAAGTGCCATTCTGG
Found at i:225866607 original size:28 final size:28
Alignment explanation
Indices: 225866519--225866620 Score: 125
Period size: 28 Copynumber: 3.6 Consensus size: 28
225866509 TTTTGGATGT
* *
225866519 TTCGCACACTAAGTGTCATCCTCGTTAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
* * *
225866547 TTCGCACACTAAGTGCCATTCTGGAT-G
1 TTCGCACACTAAGTGCCATCCTCGATAC
*
225866574 TATCGCACACTAAGTGCCATCCCCGATAC
1 T-TCGCACACTAAGTGCCATCCTCGATAC
*
225866603 TTCGCACATTAAGTGCCA
1 TTCGCACACTAAGTGCCA
225866621 CATATAATTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
27 1 0.02
28 60 0.97
29 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:225868395 original size:2 final size:2
Alignment explanation
Indices: 225868388--225868414 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
225868378 AATAATCATA
225868388 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
225868415 GGGAAAGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:225873250 original size:39 final size:39
Alignment explanation
Indices: 225873196--225873358 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
225873186 TGTGAATGAA
225873196 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
225873235 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
225873274 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
225873313 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
225873353 TGTGCG
1 TGTGCG
225873359 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:225873374 original size:40 final size:39
Alignment explanation
Indices: 225873196--225873388 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
225873186 TGTGAATGAA
* *
225873196 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
225873235 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
225873274 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
225873313 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
225873353 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
225873389 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:225879986 original size:35 final size:35
Alignment explanation
Indices: 225879947--225880015 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
225879937 CACTTGCCTC
*
225879947 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCT
1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACCT
*
225879982 TTCCCATTCTCCCATGCTGTCTGCCACCAACACC
1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACC
225880016 ATCACACACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.16, C:0.48, G:0.10, T:0.26
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAACACCT
Found at i:225880414 original size:20 final size:21
Alignment explanation
Indices: 225880391--225880447 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 21
225880381 TATATATATT
*
225880391 AAAACATA-AAAAAATATACAA
1 AAAATATACAAAAAATATA-AA
225880412 AAAGATATACAAAAAATAT-AA
1 AAA-ATATACAAAAAATATAAA
225880433 AAAATATACAAAAAA
1 AAAATATACAAAAAA
225880448 AAATTTACCT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
20 12 0.36
21 8 0.24
22 4 0.12
23 9 0.27
ACGTcount: A:0.75, C:0.07, G:0.02, T:0.16
Consensus pattern (21 bp):
AAAATATACAAAAAATATAAA
Found at i:225880425 original size:11 final size:11
Alignment explanation
Indices: 225880399--225880447 Score: 75
Period size: 11 Copynumber: 4.5 Consensus size: 11
225880389 TTAAAACATA
225880399 AAAAAATATAC
1 AAAAAATATAC
225880410 AAAAAGATATAC
1 AAAAA-ATATAC
225880422 AAAAAATAT--
1 AAAAAATATAC
225880431 AAAAAATATAC
1 AAAAAATATAC
225880442 AAAAAA
1 AAAAAA
225880448 AAATTTACCT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
9 9 0.26
11 15 0.43
12 11 0.31
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.16
Consensus pattern (11 bp):
AAAAAATATAC
Found at i:225880448 original size:12 final size:12
Alignment explanation
Indices: 225880398--225880448 Score: 65
Period size: 12 Copynumber: 4.6 Consensus size: 12
225880388 ATTAAAACAT
225880398 AAAAAAATATAC
1 AAAAAAATATAC
*
225880410 AAAAAGATATAC
1 AAAAAAATATAC
225880422 -AAAAAATAT--
1 AAAAAAATATAC
225880431 -AAAAAATATAC
1 AAAAAAATATAC
225880442 AAAAAAA
1 AAAAAAA
225880449 AATTTACCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 9 0.26
11 8 0.24
12 17 0.50
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.16
Consensus pattern (12 bp):
AAAAAAATATAC
Found at i:225880575 original size:11 final size:11
Alignment explanation
Indices: 225880542--225880575 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
225880532 CGGATTCCCC
225880542 TCCCT-TCTCT
1 TCCCTCTCTCT
225880552 CTCCCTCTCTCT
1 -TCCCTCTCTCT
225880564 TCCCTCTCTCT
1 TCCCTCTCTCT
225880575 T
1 T
225880576 TTTTTTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 17 0.77
12 5 0.23
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (11 bp):
TCCCTCTCTCT
Found at i:225881059 original size:3 final size:3
Alignment explanation
Indices: 225881051--225881081 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
225881041 TGCATTTCAA
225881051 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
225881082 GAAATACATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:225881191 original size:3 final size:3
Alignment explanation
Indices: 225881183--225881233 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
225881173 TGTGTTTCAA
225881183 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
225881231 TAT
1 TAT
225881234 ATATCCTTGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:225881505 original size:33 final size:30
Alignment explanation
Indices: 225881447--225881517 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 30
225881437 TAATATTATG
*
225881447 TATATATTTTAATATTATCAGTTATATATA
1 TATATATTTTAATACTATCAGTTATATATA
*
225881477 CTATATGATTTCTAATACTATTA-TT-TATATA
1 -TATAT-ATTT-TAATACTATCAGTTATATATA
225881508 TATATATTTT
1 TATATATTTT
225881518 CTTAGTACCA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
28 1 0.03
29 4 0.11
30 5 0.14
31 11 0.31
32 6 0.17
33 9 0.25
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.55
Consensus pattern (30 bp):
TATATATTTTAATACTATCAGTTATATATA
Found at i:225893964 original size:14 final size:14
Alignment explanation
Indices: 225893945--225893973 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
225893935 CGCTGAGGTA
225893945 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
225893959 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
225893973 T
1 T
225893974 CATCAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:225894086 original size:74 final size:75
Alignment explanation
Indices: 225893960--225894541 Score: 602
Period size: 70 Copynumber: 7.7 Consensus size: 75
225893950 AATTTCTGTT
*
225893960 TTTCAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTGTTCATCGAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
225894025 GTTGAGGTAA
66 GTTGAGGTAA
* * *
225894035 TTTTAATTTCTGTTCATC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCAC
1 TTTCAATTTCTGTTCATCGAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GAC
* *
225894099 GCGCTGAGGT-A
64 ACGTTGAGGTAA
**
225894110 TTTCCAATTTCTGTTTTTCAATTTCTGTTGTCAAAAT-AACTCATATTGCG-GAGGTGAGTTGAG
1 TTT-CAATTTCTG---TTC-A--TC----GAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
225894173 CCTCAGGACACGTTGAGGTAA
55 CCTCAGGACACGTTGAGGTAA
* * **
225894194 TTTTAATTTCTGTTCATC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCAC
1 TTTCAATTTCTGTTCATCGAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *
225894258 GCTGAGGTAT
66 GTTGAGGTAA
**
225894268 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTCAATTTCTG---TTC-A-------TCGAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
225894333 CCTCAAGACACGTTGAGGTAA
55 CCTCAGGACACGTTGAGGTAA
*
225894354 TTTCAATTTCTGTT--TC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTCAATTTCTGTTCATCGAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
225894414 GTTGAGGTAA
66 GTTGAGGTAA
* * ** *
225894424 TTTCAATTTCTGTT-TTC---AAAATTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTCAATTTCTGTTCATCGAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
225894485 GTTGAGGT-A
66 GTTGAGGTAA
* * *
225894494 TTTCAATTTCTGTT-TTCAAAAAAATCAACTTATATTGCGAGAGGTGAG
1 TTTCAATTTCTGTTCATCGAAAAAATCAACTCATATTGCGAGAGGTGAG
225894542 NNNNNNNNNN
Statistics
Matches: 438, Mismatches: 36, Indels: 68
0.81 0.07 0.13
Matches are distributed among these distances:
70 86 0.20
71 51 0.12
72 5 0.01
73 39 0.09
74 80 0.18
75 21 0.05
76 18 0.04
77 5 0.01
78 1 0.00
79 4 0.01
80 4 0.01
82 2 0.00
83 20 0.05
84 4 0.01
85 20 0.05
86 73 0.17
87 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (75 bp):
TTTCAATTTCTGTTCATCGAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GTTGAGGTAA
Found at i:225894244 original size:159 final size:161
Alignment explanation
Indices: 225893887--225894541 Score: 914
Period size: 159 Copynumber: 4.2 Consensus size: 161
225893877 CCAAATTCTA
225893887 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCAA
1 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCAA
*
225893952 TTTCTGTTTTTCAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 TTTCTGTTTTTCAATTTCTGTTCGTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
225894017 CAGGACACGTTGAGGTAATTTTAATTTCTGTTCAT
128 CAAGACACGTTGAGGTAATTTCAATTTCTGTT-AT
* *
225894052 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTCCAA
1 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCAA
*
225894117 TTTCTGTTTTTCAATTTCTGTT-GTCAAAAT-AACTCATATTGCG-GAGGTGAGTTGAGCCTCAG
66 TTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
*
225894179 GACACGTTGAGGTAATTTTAATTTCTGTTCAT
131 GACACGTTGAGGTAATTTCAATTTCTGTT-AT
*
225894211 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCA--CGCTGAGGTATTTTCAA
1 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCAA
225894274 TTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 TTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
225894339 GACACGTTGAGGTAATTTCAATTTCTGTT-T
131 GACACGTTGAGGTAATTTCAATTTCTGTTAT
* *
225894369 C--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGTTGAGG-----T-A
1 CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGCTCACGCGCTGAGGTATTTTCA
* * **
225894423 A--------TTTCAATTTCTGTT-TTCAAAATTAACTCATATTGCGAGAAATGAGTTGAGCCTCA
65 ATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
225894479 AGACACGTTGAGGT-ATTTCAATTTCTGTTTT
130 AGACACGTTGAGGTAATTTCAATTTCTGTTAT
*
225894510 CAAAAAAATCAACTTATATTGCGAGAGGTGAG
1 C-AAAAAATCAACTCATATTGCGAGAGGTGAG
225894542 NNNNNNNNNN
Statistics
Matches: 467, Mismatches: 13, Indels: 41
0.90 0.02 0.08
Matches are distributed among these distances:
140 15 0.03
141 53 0.11
142 14 0.03
144 27 0.06
150 2 0.00
151 1 0.00
154 1 0.00
156 43 0.09
157 40 0.09
158 10 0.02
159 110 0.24
160 59 0.13
161 5 0.01
164 2 0.00
165 85 0.18
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (161 bp):
CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCAA
TTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTAATTTCAATTTCTGTTAT
Found at i:225894286 original size:14 final size:14
Alignment explanation
Indices: 225894267--225894295 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
225894257 CGCTGAGGTA
225894267 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
225894281 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
225894295 T
1 T
225894296 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:225894350 original size:86 final size:86
Alignment explanation
Indices: 225894194--225894368 Score: 264
Period size: 86 Copynumber: 2.0 Consensus size: 86
225894184 GTTGAGGTAA
* *
225894194 TTTTAATTTCTGTTCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACG
1 TTTTAATTTCTGTTCATC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACG
*
225894259 CTGAGGTATTTTCAATTTCTGT
65 CTGAGGTAATTTCAATTTCTGT
*
225894281 TTTTCAATTTCTGTTCGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACAC
1 TTTT-AATTTCTGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGCACAC
*
225894344 GTTGAGGTAATTTCAATTTCTGT
64 GCTGAGGTAATTTCAATTTCTGT
225894367 TT
1 TT
225894369 CAAAATCAAC
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
86 62 0.77
87 6 0.07
88 13 0.16
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (86 bp):
TTTTAATTTCTGTTCATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGC
TGAGGTAATTTCAATTTCTGT
Found at i:225904612 original size:27 final size:27
Alignment explanation
Indices: 225904577--225904641 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
225904567 TTAGCTCTTA
*
225904577 TGAGCTTCCCGATTATA-TGGCTCTTTG
1 TGAGCTTCCC-ATTAAATTGGCTCTTTG
* *
225904604 TGAGGTTCCCATTAAATTGTCTCTTTG
1 TGAGCTTCCCATTAAATTGGCTCTTTG
225904631 TGAGCTTCCCA
1 TGAGCTTCCCA
225904642 ATATGGCTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.15
27 28 0.85
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (27 bp):
TGAGCTTCCCATTAAATTGGCTCTTTG
Found at i:225906818 original size:44 final size:45
Alignment explanation
Indices: 225906769--225906877 Score: 118
Period size: 44 Copynumber: 2.5 Consensus size: 45
225906759 AGCACAATTA
*
225906769 AATTGAAAG-AGAAAAG-AGAAATAGAATAATACTAATTCGATGTC
1 AATTGAAAGCA-AAAAGTAGAAATAAAATAATACTAATTCGATGTC
* * * *
225906813 AATTG-AAGCATAGAGTAGAATTAAAATAATCCTAATTCGATGTC
1 AATTGAAAGCAAAAAGTAGAAATAAAATAATACTAATTCGATGTC
* *
225906857 AATTG-AAGCACAGAGTAGAAA
1 AATTGAAAGCAAAAAGTAGAAA
225906878 ATCTTTCGAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
43 6 0.11
44 50 0.89
ACGTcount: A:0.49, C:0.09, G:0.18, T:0.24
Consensus pattern (45 bp):
AATTGAAAGCAAAAAGTAGAAATAAAATAATACTAATTCGATGTC
Found at i:225910841 original size:37 final size:37
Alignment explanation
Indices: 225910791--225910863 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
225910781 TACGAAGTCT
225910791 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
225910828 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
225910864 TCACCTGGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.22
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTCG
Found at i:225911173 original size:49 final size:48
Alignment explanation
Indices: 225910945--225911289 Score: 602
Period size: 48 Copynumber: 7.1 Consensus size: 48
225910935 TTTACCACAT
225910945 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACA-TTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
225910994 ATATATATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
225911042 ATATATATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
225911090 ATATGTATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
225911138 ATATGTATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACA-TTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
225911187 ATATATATACAGTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACA-TTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
225911236 ATATGTATACATTTTCACATTCATCACATCGG-CATTAGGCCTTATCAC
1 ATATATATACA-TTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
225911284 ATATAT
1 ATATAT
225911290 TATTATGTAC
Statistics
Matches: 286, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
48 162 0.57
49 124 0.43
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (48 bp):
ATATATATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:225914193 original size:40 final size:40
Alignment explanation
Indices: 225914177--225914289 Score: 122
Period size: 40 Copynumber: 2.8 Consensus size: 40
225914167 TTATAGTGAT
225914177 TCGCACAATTGCCTTCGGGAATTAGCCAGGATTTAGTAAC
1 TCGCACAATTGCCTTCGGGAATTAGCCAGGATTTAGTAAC
* *
225914217 TCGCACAAATGCCTTCGGGAATT-GACTC-GGATTTAGTCAC
1 TCGCACAATTGCCTTCGGGAATTAG-C-CAGGATTTAGTAAC
* ** * *
225914257 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 -TCGCACAATTGCCTTCGGGAATTAGCCAGGAT
225914290 ACCATTCGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
39 1 0.02
40 35 0.56
41 26 0.41
42 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
TCGCACAATTGCCTTCGGGAATTAGCCAGGATTTAGTAAC
Found at i:225915094 original size:40 final size:40
Alignment explanation
Indices: 225915032--225915183 Score: 250
Period size: 40 Copynumber: 3.8 Consensus size: 40
225915022 CCAGCATGAT
* * *
225915032 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
225915072 TGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
225915112 TGCTTTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
225915152 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
225915184 CTCAATTCTC
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:225917053 original size:37 final size:36
Alignment explanation
Indices: 225917003--225917089 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
225916993 TACGAAGTCT
225917003 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
225917039 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
225917076 TCACCCGGAACATA
1 T-ACCCGG-ACATA
225917090 TTTCTAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:225917253 original size:47 final size:47
Alignment explanation
Indices: 225917158--225917488 Score: 557
Period size: 47 Copynumber: 7.1 Consensus size: 47
225917148 TTTACCACAT
225917158 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATAT-TATACA-TTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
225917207 ATATTATACATTTTCACATTCATCAC-TCGGCCATTAGGCCTTATCAC
1 ATATTATACA-TTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
225917254 ATA-TATACA-TTCACATTCATCA--TCGGCCATTAGGCCTTATCAC
1 ATATTATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
225917297 ATATTATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATTATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
*
225917344 ATATGTATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATAT-TATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
225917392 ATATTATAC-TTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATTATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
* *
225917438 ATAGTATACATTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATTATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
225917485 ATAT
1 ATAT
225917489 ATTATTATGT
Statistics
Matches: 270, Mismatches: 6, Indels: 14
0.93 0.02 0.05
Matches are distributed among these distances:
43 24 0.09
44 19 0.07
45 13 0.05
46 50 0.19
47 93 0.34
48 67 0.25
49 4 0.01
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (47 bp):
ATATTATACATTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
Found at i:225926317 original size:40 final size:39
Alignment explanation
Indices: 225926272--225926401 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
225926262 CGGAATATAA
225926272 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
225926312 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
225926352 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
225926392 CCGGATATAA
1 CCGGATATAA
225926402 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:225926416 original size:40 final size:40
Alignment explanation
Indices: 225926288--225926438 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
225926278 ATAACCATGT
* * *
225926288 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
225926328 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
225926368 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
225926408 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
225926439 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 15 0.16
40 74 0.81
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:225926422 original size:80 final size:79
Alignment explanation
Indices: 225926288--225926436 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
225926278 ATAACCATGT
*
225926288 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
225926353 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
225926368 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
225926431 CCGGAT
64 CCGGAT
225926437 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:225934287 original size:40 final size:39
Alignment explanation
Indices: 225934242--225934371 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
225934232 CGGAATATAA
225934242 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
225934282 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
225934322 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
225934362 CCGGATATAA
1 CCGGATATAA
225934372 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:225934386 original size:40 final size:40
Alignment explanation
Indices: 225934258--225934408 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
225934248 ATAACCATGT
* * *
225934258 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
225934298 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
225934338 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
225934378 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
225934409 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 15 0.16
40 74 0.81
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:225934392 original size:80 final size:79
Alignment explanation
Indices: 225934258--225934406 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
225934248 ATAACCATGT
*
225934258 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
225934323 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
225934338 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
225934401 CCGGAT
64 CCGGAT
225934407 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:225939176 original size:21 final size:18
Alignment explanation
Indices: 225939138--225939192 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
225939128 GGAAGAATAA
225939138 AGAAATGAAAAAAAAAAG
1 AGAAATGAAAAAAAAAAG
225939156 AGAATATGAAGAAAAACAAAG
1 AGAA-ATGAA-AAAAA-AAAG
225939177 A-AAA-GAAAAAAAAAAG
1 AGAAATGAAAAAAAAAAG
225939193 TGTTCATTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 7 0.21
19 6 0.18
20 7 0.21
21 5 0.15
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.05
Consensus pattern (18 bp):
AGAAATGAAAAAAAAAAG
Found at i:225940379 original size:29 final size:29
Alignment explanation
Indices: 225940346--225940438 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
225940336 TGACGAGATT
* *
225940346 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
*
225940375 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
225940404 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
225940433 GGCACT
1 GGCACT
225940439 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:225940451 original size:29 final size:29
Alignment explanation
Indices: 225940346--225940451 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
225940336 TGACGAGATT
* *
225940346 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
*
225940375 GGCACTAAGTGTGC-ATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAA
* * * *
225940404 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
225940433 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
225940452 CAGAGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:225945309 original size:29 final size:28
Alignment explanation
Indices: 225945275--225945377 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
225945265 TACTCAATCA
*
225945275 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
225945304 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
225945333 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
225945362 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
225945378 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:225950831 original size:16 final size:16
Alignment explanation
Indices: 225950812--225950842 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
225950802 CTTCTTCACT
225950812 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
225950828 TACTTACTTACTTAA
1 TACTCACTTACTTAA
225950843 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:225950848 original size:20 final size:20
Alignment explanation
Indices: 225950809--225950848 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
225950799 AAACTTCTTC
* *
225950809 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
225950829 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
225950849 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:225950959 original size:23 final size:24
Alignment explanation
Indices: 225950921--225950965 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
225950911 TTTGCTCTTC
*
225950921 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
225950945 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
225950966 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:225951166 original size:53 final size:54
Alignment explanation
Indices: 225951034--225951288 Score: 229
Period size: 55 Copynumber: 4.8 Consensus size: 54
225951024 ACACGGGTAC
* * * *
225951034 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
** * * *
225951083 CTTACCTTTGTCATGTCTTGACATGGTCTTACATGGTATGCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
225951136 CTCACCAATGCTATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * * *
225951191 CTTATCAATGCCATGTCTAGACATGGTATTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
*
225951244 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
225951289 AAACCCTAAT
Statistics
Matches: 162, Mismatches: 33, Indels: 16
0.77 0.16 0.08
Matches are distributed among these distances:
49 35 0.22
50 1 0.01
52 1 0.01
53 46 0.28
54 10 0.06
55 67 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:225954944 original size:24 final size:24
Alignment explanation
Indices: 225954917--225955123 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
225954907 CTTATTATGT
* * *
225954917 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
225954941 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
225954965 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
225954989 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
225955013 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
225955037 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
225955061 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
225955085 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
225955109 TCGCACACATAGTGC
1 TCGCACACATAGTGC
225955124 ATTTGAGATA
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:225955580 original size:2 final size:2
Alignment explanation
Indices: 225955573--225955600 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
225955563 TGGGCATACT
225955573 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
225955601 CCCGATTGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:225962691 original size:24 final size:24
Alignment explanation
Indices: 225962664--225962870 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
225962654 CTTATTATGT
* * *
225962664 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
* *
225962688 TCGCACACATAGTGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
225962712 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
225962736 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
225962760 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
225962784 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
225962808 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
225962832 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
225962856 TCGCACACATAGTGC
1 TCGCACACATAGTGC
225962871 ATTTGAGATA
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:225965271 original size:47 final size:47
Alignment explanation
Indices: 225965213--225965750 Score: 797
Period size: 47 Copynumber: 11.3 Consensus size: 47
225965203 GTATGAGATA
*
225965213 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* * *
225965260 CATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
*
225965307 CATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
*
225965354 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* *
225965401 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
225965448 CATATATGAGATAAGGCCGAATGACCGATGTGATGAATGCGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* *
225965495 CATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 --TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA--GTG
*
225965546 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* *
225965593 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 --TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
*
225965642 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * *
225965689 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
*
225965736 TATAAATGTGATAAG
1 TATATATGTGATAAG
225965751 TCCCGAAGGG
Statistics
Matches: 450, Mismatches: 35, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
47 320 0.71
49 127 0.28
51 3 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:225973806 original size:17 final size:18
Alignment explanation
Indices: 225973764--225973812 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
225973754 AGTTGAAAAG
225973764 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
225973783 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
225973800 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
225973813 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:225974753 original size:39 final size:40
Alignment explanation
Indices: 225974630--225974795 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
225974620 AAATTGAATG
* * *
225974630 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
225974669 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
225974709 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
225974748 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
225974788 ATATCCGG
1 ATATCCGG
225974796 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:225974762 original size:79 final size:79
Alignment explanation
Indices: 225974630--225974779 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
225974620 AAATTGAATG
*
225974630 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
225974695 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
225974709 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
225974772 ATTTGTGC
64 AATTGTGC
225974780 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:225979956 original size:40 final size:39
Alignment explanation
Indices: 225979881--225979974 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 39
225979871 CATCTCCGAC
* *
225979881 CAACCCAACACACC-ATATGGGGATAGAATCGACCCAAA
1 CAACCCTACACACCAATATGGGGATAGAATCAACCCAAA
* * **
225979919 CAACCCTACACACCAAGTATGTGGATATAATCAACCCATC
1 CAACCCTACACACCAA-TATGGGGATAGAATCAACCCAAA
*
225979959 CAACCCTACAGACCAA
1 CAACCCTACACACCAA
225979975 AAGGTACCGT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 13 0.28
39 1 0.02
40 33 0.70
ACGTcount: A:0.40, C:0.34, G:0.12, T:0.14
Consensus pattern (39 bp):
CAACCCTACACACCAATATGGGGATAGAATCAACCCAAA
Found at i:225984082 original size:17 final size:18
Alignment explanation
Indices: 225984040--225984088 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
225984030 AGTTGAAAAG
225984040 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
225984059 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
225984076 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
225984089 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Done.