Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 715 of 770
Found at i:225984976 original size:40 final size:40
Alignment explanation
Indices: 225984910--225985076 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
225984900 AAATTGAATG
* * *
225984910 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
225984949 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
225984989 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
225985029 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
225985069 ATATCCGG
1 ATATCCGG
225985077 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:225994400 original size:40 final size:40
Alignment explanation
Indices: 225994345--225994554 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
225994335 AACATTGGAA
225994345 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
225994385 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
225994425 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
225994465 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
225994504 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
225994545 CTATATCCGG
1 ATATATCCGG
225994555 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:225996100 original size:40 final size:40
Alignment explanation
Indices: 225996053--225996233 Score: 229
Period size: 40 Copynumber: 4.5 Consensus size: 40
225996043 CAAGCACAAT
* * *** * *
225996053 TGCCTTCGGGTCTTAACCTGGATTTGGTAACTTGCACCAA
1 TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAA
*
225996093 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAA
225996133 TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAA
* * **
225996173 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATTTAA-CAACTCGCACGAA
*
225996213 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
225996234 GTTTCATTCA
Statistics
Matches: 126, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 125 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAA
Found at i:225996175 original size:80 final size:78
Alignment explanation
Indices: 225996030--225996233 Score: 255
Period size: 80 Copynumber: 2.5 Consensus size: 78
225996020 CGGAATCTAA
* * * *** *
225996030 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCTGGATTTGGTAACTTGCACCAATG
1 CCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACCAATG
225996095 CCTTCGGGTCTTAGC
64 CCTTCGGGTCTTAGC
* *
225996110 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACGAATG
1 CCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACCAATG
225996175 CCTTCGGGTCTTAGC
64 CCTTCGGGTCTTAGC
* *
225996190 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
225996234 GTTTCATTCA
Statistics
Matches: 108, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
79 1 0.01
80 104 0.96
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTCGCACCAATGCC
TTCGGGTCTTAGC
Found at i:226002833 original size:40 final size:40
Alignment explanation
Indices: 226002696--226002881 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
226002686 TCGAATGATG
* * *
226002696 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
226002736 TCCGGACTAAGAT-CCGAATGCATTCGTGCTAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
226002776 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
226002816 TCCGGGTTAAGTCCCGAAGGAATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
226002857 -CCGGGATATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
226002882 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 115 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:226007647 original size:40 final size:40
Alignment explanation
Indices: 226007602--226007769 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
226007592 CGGAATATAA
226007602 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
226007642 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
226007682 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
226007722 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
226007762 CCGGATAT
1 CCGGATAT
226007770 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:226022900 original size:39 final size:40
Alignment explanation
Indices: 226022817--226022967 Score: 148
Period size: 39 Copynumber: 3.8 Consensus size: 40
226022807 GGATATAGCG
* * * * **
226022817 ACTCGCTCAAAAGCCTTC-GGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTA
* * *
226022856 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGG-A
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTA
* *
226022895 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGTA
*
226022935 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
226022968 CATCATTCGA
Statistics
Matches: 91, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
38 3 0.03
39 46 0.51
40 31 0.34
41 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGTA
Found at i:226025444 original size:39 final size:39
Alignment explanation
Indices: 226025398--226025524 Score: 164
Period size: 39 Copynumber: 3.3 Consensus size: 39
226025388 ATTCACTTTT
* * *
226025398 AAGCATATATCACATTACACATATAATCACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
** ** * **
226025437 ATTCATATATCACAATACTTTTATAATTACATAATGTTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
226025476 AAGCATATATCACAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
226025515 AAGCATATAT
1 AAGCATATAT
226025525 ATTGCAATAC
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.44, C:0.19, G:0.03, T:0.34
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:226028273 original size:38 final size:39
Alignment explanation
Indices: 226028189--226028339 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
226028179 TATGGTAACC
* *
226028189 CGCACAA-AGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
226028228 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA-TACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
226028266 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
226028305 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
226028340 TCGAACATTC
Statistics
Matches: 105, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
38 37 0.35
39 59 0.56
40 9 0.09
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:226028299 original size:77 final size:77
Alignment explanation
Indices: 226028189--226028338 Score: 257
Period size: 77 Copynumber: 1.9 Consensus size: 77
226028179 TATGGTAACC
226028189 CGCACAAAGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
1 CGCACAAAGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
226028254 GGATATCATACT
66 GGATATCATACT
* * *
226028266 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAA-AGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
226028330 CGGATATCA
65 CGGATATCA
226028339 CTCGAACATT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 60 0.87
78 9 0.13
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (77 bp):
CGCACAAAGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCC
GGATATCATACT
Found at i:226036035 original size:40 final size:39
Alignment explanation
Indices: 226035971--226036158 Score: 232
Period size: 39 Copynumber: 4.8 Consensus size: 39
226035961 GCTACTCGTT
* * * ** *
226035971 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
226036011 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
226036051 CAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
226036090 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
*
226036129 CAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCA
226036159 CTCGAACATT
Statistics
Matches: 133, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 88 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:226036088 original size:39 final size:39
Alignment explanation
Indices: 226036007--226036159 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
226035997 TATGGTAACC
* *
226036007 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
226036047 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
226036086 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
226036125 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
226036160 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:226040775 original size:40 final size:40
Alignment explanation
Indices: 226040613--226040814 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
226040603 CGAATGATGT
*
226040613 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
226040653 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
226040692 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
226040730 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
226040771 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
226040811 CCGG
1 CCGG
226040815 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:226040777 original size:78 final size:79
Alignment explanation
Indices: 226040612--226040763 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
226040602 TCGAATGATG
* * *
226040612 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
226040677 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
226040692 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
226040755 GTGCAAGTC
65 GTGCAAGTC
226040764 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:226048852 original size:40 final size:40
Alignment explanation
Indices: 226048690--226048891 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
226048680 CGAATGATGT
*
226048690 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
226048730 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
226048769 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
226048807 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
226048848 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
226048888 CCGG
1 CCGG
226048892 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:226048854 original size:78 final size:79
Alignment explanation
Indices: 226048689--226048840 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
226048679 TCGAATGATG
* * *
226048689 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
226048754 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
226048769 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
226048832 GTGCAAGTC
65 GTGCAAGTC
226048841 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:226056879 original size:40 final size:40
Alignment explanation
Indices: 226056717--226056918 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
226056707 CGAATGATGT
*
226056717 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTCG-CTATAA
* * * * ***
226056757 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTCGCTATAA
**
226056796 TCCGGGCTAA-TCCCGAAGGC-TTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
* *
226056834 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
** * * * *
226056875 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
226056915 CCGG
1 CCGG
226056919 TTAAATTCCG
Statistics
Matches: 129, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 77 0.60
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTCGCTATAA
Found at i:226056881 original size:78 final size:79
Alignment explanation
Indices: 226056716--226056867 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 79
226056706 TCGAATGATG
* * *
226056716 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* *
226056781 GTGCGAGTTAATAAA
65 GTGCAAGTCAATAAA
* **
226056796 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
226056859 GTGCAAGTC
65 GTGCAAGTC
226056868 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 1 0.02
78 35 0.56
79 17 0.27
80 10 0.16
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAGTCAATAAA
Found at i:226060272 original size:27 final size:28
Alignment explanation
Indices: 226060216--226060285 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
226060206 AAATTTGTAC
226060216 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
226060244 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
226060271 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
226060286 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:226060296 original size:27 final size:27
Alignment explanation
Indices: 226060216--226060297 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
226060206 AAATTTGTAC
* *
226060216 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
226060244 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
226060271 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
226060298 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:226067815 original size:28 final size:28
Alignment explanation
Indices: 226067750--226067850 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
226067740 ATAGTGAATC
*
226067750 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
226067779 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
226067807 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
226067837 CGCACACTTAGTGC
1 CGCACACTTAGTGC
226067851 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:226072333 original size:33 final size:33
Alignment explanation
Indices: 226072291--226072438 Score: 105
Period size: 33 Copynumber: 4.6 Consensus size: 33
226072281 TGGGCTGAAG
226072291 CCCTTTTCAGA-ATACAGTAAACTGGGCCTTAGC
1 CCCTTTTCAGATA-ACAGTAAACTGGGCCTTAGC
* * *
226072324 CCCTTTTCAGATAACAGT--A-TGGCCCATAGG
1 CCCTTTTCAGATAACAGTAAACTGGGCCTTAGC
* * ** * * *
226072354 TCC-ATTCAGATAACAGTGGGTATTAGG-CTGAAG-
1 CCCTTTTCAGATAACAGT--AAACTGGGCCT-TAGC
226072387 CCCTTTTCAGA-ATACAGTAAACTGGGCCTTAGC
1 CCCTTTTCAGATA-ACAGTAAACTGGGCCTTAGC
226072420 CCCTTTTCAGATAACAGTA
1 CCCTTTTCAGATAACAGTA
226072439 TGGCCCATAG
Statistics
Matches: 87, Mismatches: 16, Indels: 24
0.69 0.13 0.19
Matches are distributed among these distances:
29 13 0.15
30 10 0.11
31 1 0.01
32 6 0.07
33 40 0.46
34 17 0.20
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (33 bp):
CCCTTTTCAGATAACAGTAAACTGGGCCTTAGC
Found at i:226072389 original size:96 final size:96
Alignment explanation
Indices: 226072257--226072456 Score: 382
Period size: 96 Copynumber: 2.1 Consensus size: 96
226072247 TTGGGCCTAA
*
226072257 GCCCATTCAGATAACAGTGGGTATTGGGCTGAAGCCCTTTTCAGAATACAGTAAACTGGGCCTTA
1 GCCCATTCAGATAACAGTGGGTATTAGGCTGAAGCCCTTTTCAGAATACAGTAAACTGGGCCTTA
226072322 GCCCCTTTTCAGATAACAGTATGGCCCATAG
66 GCCCCTTTTCAGATAACAGTATGGCCCATAG
*
226072353 GTCCATTCAGATAACAGTGGGTATTAGGCTGAAGCCCTTTTCAGAATACAGTAAACTGGGCCTTA
1 GCCCATTCAGATAACAGTGGGTATTAGGCTGAAGCCCTTTTCAGAATACAGTAAACTGGGCCTTA
226072418 GCCCCTTTTCAGATAACAGTATGGCCCATAG
66 GCCCCTTTTCAGATAACAGTATGGCCCATAG
226072449 GCCCATTC
1 GCCCATTC
226072457 CAGAACAGAA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 101 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (96 bp):
GCCCATTCAGATAACAGTGGGTATTAGGCTGAAGCCCTTTTCAGAATACAGTAAACTGGGCCTTA
GCCCCTTTTCAGATAACAGTATGGCCCATAG
Found at i:226076596 original size:29 final size:28
Alignment explanation
Indices: 226076562--226076664 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
226076552 TACTCAATCA
*
226076562 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
226076591 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
226076620 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
226076649 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
226076665 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:226077792 original size:20 final size:20
Alignment explanation
Indices: 226077759--226077811 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
226077749 GGAAGAATAA
226077759 AGAAATGAAAAAAAA-AAAG
1 AGAAATGAAAAAAAACAAAG
*
226077778 AGAATATGAAGAAAAACAAAG
1 AGAA-ATGAAAAAAAACAAAG
226077799 A-AAA-GAAAAAAAA
1 AGAAATGAAAAAAAA
226077812 AGTGTTCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
20 12 0.40
21 5 0.17
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (20 bp):
AGAAATGAAAAAAAACAAAG
Found at i:226079003 original size:29 final size:29
Alignment explanation
Indices: 226078970--226079052 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
226078960 GTGACGAGAT
226078970 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
226078999 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
226079028 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
226079053 AAATACGGCA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:226079092 original size:59 final size:58
Alignment explanation
Indices: 226078966--226079101 Score: 152
Period size: 59 Copynumber: 2.3 Consensus size: 58
226078956 TACGGTGACG
* * *
226078966 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTGCAA
* **
226079023 ATATATGGCACTAAGTGTGCATGCTGGAAAAAATACGGCACTGGGTGTGCGA-GCT-CAA
1 AGATATGGCACTAAGTGTGCATGCTGG-AAAAATACGGCACTAAGTGTGC-ATGCTGCAA
* *
226079081 AGGGTATGGCACTATGTGTGC
1 A-GATATGGCACTAAGTGTGC
226079102 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
57 3 0.05
58 25 0.38
59 37 0.56
60 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTGCAA
Found at i:226081235 original size:17 final size:17
Alignment explanation
Indices: 226081213--226081251 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
226081203 AGAATTTTTT
226081213 TTTTTTTTTTTCACCTA
1 TTTTTTTTTTTCACCTA
226081230 TTTTTTTTTTTCACCTA
1 TTTTTTTTTTTCACCTA
226081247 TTTTT
1 TTTTT
226081252 CTCTTCTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTTTTTTTCACCTA
Found at i:226082569 original size:40 final size:40
Alignment explanation
Indices: 226082473--226082621 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 40
226082463 AATTGAATGA
* * * *
226082473 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAAT-T
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
226082512 TAT-CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
226082552 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
226082591 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
226082622 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 12, Indels: 17
0.75 0.10 0.14
Matches are distributed among these distances:
38 25 0.28
39 13 0.15
40 49 0.55
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:226082635 original size:40 final size:40
Alignment explanation
Indices: 226082515--226082637 Score: 124
Period size: 40 Copynumber: 3.1 Consensus size: 40
226082505 GGAAATTTAT
* * * * * *
226082515 CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTATATC
* ** *
226082555 CGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTCTATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTATATC
226082595 CGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTATATC
226082635 CGG
1 CGG
226082638 TTATTTCCGA
Statistics
Matches: 66, Mismatches: 15, Indels: 4
0.78 0.18 0.05
Matches are distributed among these distances:
39 2 0.03
40 64 0.97
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTATATC
Found at i:226093210 original size:40 final size:39
Alignment explanation
Indices: 226093058--226093210 Score: 157
Period size: 40 Copynumber: 3.8 Consensus size: 39
226093048 GGATATAGCG
* * * * **
226093058 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGT
* * *
226093097 AGCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 A-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT-GGT
*
226093138 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGT
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGT
226093177 CACTCAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 -ACTC-GCACAAATGCCTTCGGGACTTAGCCCGGA
226093211 CATCATTCGA
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 6 0.06
40 77 0.82
41 11 0.12
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGT
Found at i:226097380 original size:28 final size:28
Alignment explanation
Indices: 226097315--226097415 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
226097305 ATAGTGAATC
*
226097315 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
226097344 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
226097372 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
226097402 CGCACACTTAGTGC
1 CGCACACTTAGTGC
226097416 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:226101307 original size:93 final size:93
Alignment explanation
Indices: 226101195--226101366 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
226101185 CGCCCATAAG
* *
226101195 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
226101260 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* **
226101288 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
226101353 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
226101367 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:226101310 original size:47 final size:49
Alignment explanation
Indices: 226101188--226101366 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 49
226101178 TGTAACCCGC
*
226101188 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACAT
*
226101234 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * *
226101284 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
226101327 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
226101367 TCAACCATCC
Statistics
Matches: 114, Mismatches: 8, Indels: 19
0.81 0.06 0.13
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 63 0.55
47 29 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:226108815 original size:93 final size:93
Alignment explanation
Indices: 226108703--226108874 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
226108693 CGCCCATAAG
* *
226108703 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
226108768 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
226108796 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
226108861 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
226108875 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:226108871 original size:46 final size:46
Alignment explanation
Indices: 226108696--226108871 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
226108686 TGTAACCCGC
* * *
226108696 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
226108742 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
226108792 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
226108835 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
226108872 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:226109317 original size:30 final size:29
Alignment explanation
Indices: 226109283--226109341 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
226109273 ATTTAATACG
226109283 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTT-CCCCTA
* * *
226109313 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTCCCCTA
226109342 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTCCCCTA
Found at i:226111760 original size:30 final size:30
Alignment explanation
Indices: 226111724--226111824 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
226111714 GACAAGATTG
* * *
226111724 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
226111754 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
226111782 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
226111811 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
226111825 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:226116657 original size:48 final size:48
Alignment explanation
Indices: 226116586--226116860 Score: 211
Period size: 48 Copynumber: 5.7 Consensus size: 48
226116576 TATGTGTGCT
*
226116586 AGTGTAAGACCATGTCCGGGACATGGCATCGGCCACATTATAAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATAAGAGTC
* * * *
226116634 AGTGTATGACCATGTCTGGGACATGGCATCGG---CGTTGATATGTGTGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-ATAAGAGT-C
* * * **
226116681 TAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATGCGAG-C
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATAAGAGTC
* * * * * ** * *
226116729 TAGTGTAAAACCATGTTTGGAACATAGCATCAG-CATTGTTATATGTGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CATTATAAGAGTC
* * *
226116778 AGTGTAAGACCATGTCTGGGACATGGCATC-GACACCGATGTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C-AT-TATAAGAGTC
* * *
226116828 AATGTAAGACCTTGTCTGAGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
226116861 ATTTTACCCT
Statistics
Matches: 177, Mismatches: 38, Indels: 21
0.75 0.16 0.09
Matches are distributed among these distances:
45 3 0.02
46 6 0.03
47 3 0.02
48 123 0.69
49 2 0.01
50 37 0.21
51 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATAAGAGTC
Found at i:226116735 original size:96 final size:96
Alignment explanation
Indices: 226116571--226116808 Score: 311
Period size: 96 Copynumber: 2.5 Consensus size: 96
226116561 AAGACATTTG
* *
226116571 GTTGATATGTGTGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGCCACATTATAAGAGTCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATAAGAGTCAG
** * * *
226116636 TGTATGACCATGTCTGGGACATGGCATCGGC
66 TGTAAAACCATGTCTGGAACATAGCATCAGC
* * **
226116667 GTTGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATGCGAG-CTA
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATAAGAGTC-A
*
226116731 GTGTAAAACCATGTTTGGAACATAGCATCAGC
65 GTGTAAAACCATGTCTGGAACATAGCATCAGC
*
226116763 ATTGTTATATGTGT-C-AGTGTAAGACCATGTCTGGGACATGGCATCG
1 GTTG--ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
226116809 ACACCGATGT
Statistics
Matches: 125, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
95 1 0.01
96 115 0.92
97 1 0.01
98 8 0.06
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (96 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATAAGAGTCAG
TGTAAAACCATGTCTGGAACATAGCATCAGC
Found at i:226120692 original size:48 final size:47
Alignment explanation
Indices: 226120634--226120779 Score: 188
Period size: 48 Copynumber: 3.0 Consensus size: 47
226120624 ATATACACAC
* *
226120634 ATCTCCTACATATTGCTCATTAGCCATTCGGCTTTACCACATATAGAT
1 ATCTCATACATATT-CTCATTAGCCATTCGGCTTTACCACATATACAT
*
226120682 ATCTCATACATATT-TCATATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTCTC--ATTAGCCATTCGGCTTTACCACATATACAT
* *
226120730 GTCTCATACATATT-TCATGTTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTCTCA--TTAGCCATTCGGCTTTACCACATATACAT
226120778 AT
1 AT
226120780 ATTTATCTTG
Statistics
Matches: 87, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
46 3 0.03
48 84 0.97
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (47 bp):
ATCTCATACATATTCTCATTAGCCATTCGGCTTTACCACATATACAT
Found at i:226121975 original size:2 final size:2
Alignment explanation
Indices: 226121940--226121966 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
226121930 TACATAAGGC
226121940 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
226121967 CCTATATATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:226124499 original size:47 final size:47
Alignment explanation
Indices: 226124370--226124710 Score: 503
Period size: 47 Copynumber: 7.4 Consensus size: 47
226124360 ATACAAGATA
226124370 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
226124416 -GTATATATGTGAT-AGGCCGAGTGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * * *
226124461 TATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * * * *
226124508 TGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
226124555 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * * *
226124602 TG--TATATGAGATAAGACCTAATGGCCAACGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
226124647 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
*
226124694 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
226124711 TCCCGAAGGG
Statistics
Matches: 268, Mismatches: 22, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
44 30 0.11
45 54 0.20
46 12 0.04
47 172 0.64
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
Found at i:226124568 original size:94 final size:93
Alignment explanation
Indices: 226124370--226124708 Score: 515
Period size: 92 Copynumber: 3.7 Consensus size: 93
226124360 ATACAAGATA
226124370 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTATATATGTGATAGGC
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGC
*
226124433 CGAGTGGCCAATGTGATGAATGTGAAAG
66 CGAGTGGCCAACGTGATGAATGTGAAAG
* * * *
226124461 TATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAGGG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA-GG
* *
226124526 TCGAGTGACCAACGTGATGAATGTGAAAG
65 CCGAGTGGCCAACGTGATGAATGTGAAAG
* *
226124555 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATGAGATAAGA
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT-AGG
* *
226124618 CCTAATGGCCAACGTGATGAATGTGAAAG
65 CCGAGTGGCCAACGTGATGAATGTGAAAG
* *
226124647 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATA
1 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
226124709 AGTCCCGAAG
Statistics
Matches: 222, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
91 42 0.19
92 83 0.37
93 16 0.07
94 81 0.36
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (93 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGC
CGAGTGGCCAACGTGATGAATGTGAAAG
Found at i:226127193 original size:38 final size:38
Alignment explanation
Indices: 226127129--226127203 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
226127119 AATCCGAGTT
*
226127129 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
226127167 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
226127204 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:226127315 original size:40 final size:40
Alignment explanation
Indices: 226127256--226127439 Score: 343
Period size: 40 Copynumber: 4.6 Consensus size: 40
226127246 AGGTCTCGAC
*
226127256 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
226127295 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
226127335 GATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
226127375 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
226127415 GATGTATCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAG
226127440 TATCCGGGCT
Statistics
Matches: 141, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 4 0.03
40 137 0.97
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:226127444 original size:21 final size:21
Alignment explanation
Indices: 226127418--226127460 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
226127408 TGCTAGTGAT
226127418 GTATCCGGGCTAAGTCCCGAA
1 GTATCCGGGCTAAGTCCCGAA
226127439 GTATCCGGGCTAAGTCCCGAA
1 GTATCCGGGCTAAGTCCCGAA
226127460 G
1 G
226127461 AGCATTCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.19
Consensus pattern (21 bp):
GTATCCGGGCTAAGTCCCGAA
Found at i:226127473 original size:61 final size:60
Alignment explanation
Indices: 226127378--226127499 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 60
226127368 TGCTAGTGAT
*
226127378 GTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAA
1 GTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-CCGAA
226127439 GTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAA
1 GTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAA
226127499 G
1 G
226127500 AGCATTCATG
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
60 6 0.10
61 54 0.90
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.23
Consensus pattern (60 bp):
GTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAA
Found at i:226127494 original size:40 final size:40
Alignment explanation
Indices: 226127439--226127635 Score: 254
Period size: 40 Copynumber: 5.0 Consensus size: 40
226127429 AAGTCCCGAA
226127439 GTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAT
1 GTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAT
226127479 GTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGAT
1 GTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAT
* *
226127518 GTATCC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 GTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAT
* * ** * * * *
226127557 ATATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTT
1 GTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAT
* * * *
226127597 ATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 GTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
226127636 CGTGTATTCG
Statistics
Matches: 138, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
38 8 0.06
39 58 0.42
40 72 0.52
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAT
Found at i:226131039 original size:47 final size:47
Alignment explanation
Indices: 226130987--226131412 Score: 620
Period size: 47 Copynumber: 9.3 Consensus size: 47
226130977 ACAAGATATG
*
226130987 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
226131034 TATATGTGAT-AGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
226131080 TATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
226131127 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
226131174 TATATGTGAT-AGGGCGAGTGACCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
226131220 TATATGTGAT-AGG-CG-ATGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
226131264 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* **
226131311 TATATGAGATAA-G-ATAATGGCCAA-GTGATGAATGTGAAAGTG--
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
226131353 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
226131400 TAAATGTGATAAG
1 TATATGTGATAAG
226131413 TCCCGAAGGG
Statistics
Matches: 352, Mismatches: 18, Indels: 18
0.91 0.05 0.05
Matches are distributed among these distances:
42 11 0.03
43 1 0.00
44 64 0.18
45 31 0.09
46 95 0.27
47 150 0.43
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:226131096 original size:93 final size:92
Alignment explanation
Indices: 226130987--226131410 Score: 633
Period size: 93 Copynumber: 4.6 Consensus size: 92
226130977 ACAAGATATG
*
226130987 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGCCGAA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGG-CGAA
* *
226131052 TGGCCAATGTGATGAATGTGAAAGTATA
65 TGGCCAACGTGATGAATGTGAAAGTGTA
* * *
226131080 TATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA-GG-CGA
*
226131145 GTGGCCAACGTGATGAATGTGAAAGTGTA
64 ATGGCCAACGTGATGAATGTGAAAGTGTA
* * * *
226131174 TATATGTGAT-AGGGCGAGTGACCAACGTGATGAATGTGAAAGTGTATATATGTGATAGGCG-AT
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGCGAAT
226131237 GGCCAACGTGATGAATGTGAAAGTGTA
66 GGCCAACGTGATGAATGTGAAAGTGTA
* * **
226131264 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGATAAT
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGCGAAT
226131329 GGCCAA-GTGATGAATGTGAAAGTG--
66 GGCCAACGTGATGAATGTGAAAGTGTA
* *
226131353 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
226131411 AGTCCCGAAG
Statistics
Matches: 306, Mismatches: 22, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
89 55 0.18
90 38 0.12
91 63 0.21
92 10 0.03
93 98 0.32
94 42 0.14
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.27
Consensus pattern (92 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGCGAAT
GGCCAACGTGATGAATGTGAAAGTGTA
Found at i:226136056 original size:40 final size:39
Alignment explanation
Indices: 226135891--226136074 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
226135881 AAATTGAATG
* * *
226135891 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
226135931 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
226135971 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
226136011 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
226136050 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
226136075 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:226136099 original size:80 final size:81
Alignment explanation
Indices: 226135931--226136119 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
226135921 GCTGGAAATT
* * * *
226135931 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
226135996 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
226136012 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
226136075 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
226136091 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
226136120 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:226144174 original size:40 final size:39
Alignment explanation
Indices: 226144009--226144192 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
226143999 AAATTGAATG
* * *
226144009 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
226144049 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
226144089 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
226144129 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
226144168 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
226144193 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:226144217 original size:80 final size:81
Alignment explanation
Indices: 226144049--226144237 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
226144039 GCTGGAAATT
* * * *
226144049 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
226144114 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
226144130 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
226144193 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
226144209 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
226144238 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:226146967 original size:39 final size:40
Alignment explanation
Indices: 226146826--226147032 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
226146816 CAATTGAATG
* * ** * **
226146826 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
226146866 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* *
226146906 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
226146946 AAATCC-GGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* *
226146985 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
226147025 ATATCCGG
1 ATATCCGG
226147033 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 38 0.27
40 101 0.71
41 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:226146994 original size:79 final size:79
Alignment explanation
Indices: 226146826--226147032 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 79
226146816 CAATTGAATG
* * ** * * *
226146826 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCC-GGCTAAGACCCGAAGGCA
*
226146891 ATTGTGCTAGTGACT
65 ATTGTGCAAGTGACT
* * * * *
226146906 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGCTAATACCCGAAGGCAT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGCTAAGACCCGAAGGCAA
*
226146971 TTGTGCAAGTCG-TT
66 TTGTGCAAGT-GACT
* *
226146985 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
226147033 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
79 70 0.65
80 38 0.35
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGCTAAGACCCGAAGGCAA
TTGTGCAAGTGACT
Found at i:226154816 original size:40 final size:40
Alignment explanation
Indices: 226154757--226154964 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
226154747 CAATTGAATG
* * * *
226154757 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
226154797 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
226154837 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
226154877 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
226154917 GTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
226154957 ATATCCGG
1 ATATCCGG
226154965 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:226154895 original size:80 final size:80
Alignment explanation
Indices: 226154759--226154964 Score: 243
Period size: 80 Copynumber: 2.6 Consensus size: 80
226154749 ATTGAATGAT
* * ** * * *
226154759 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
226154824 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
226154839 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* **
226154904 TGTGCAAGTCGTTGT
66 TGTGCAAGTCGCTAC
* *
226154919 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
226154965 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 106 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:226159828 original size:123 final size:123
Alignment explanation
Indices: 226159609--226159947 Score: 552
Period size: 123 Copynumber: 2.8 Consensus size: 123
226159599 GAATTATGTG
* *
226159609 AAATGAAATATGGATGTGTAATAATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
226159674 GCTAAGTCTCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
*
226159732 AAATGAAATATGGATGTATAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
226159797 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATTTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * * *
226159855 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCAG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
226159920 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
226159948 AATTATATCC
Statistics
Matches: 201, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
123 201 1.00
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:226159985 original size:40 final size:40
Alignment explanation
Indices: 226159919--226160159 Score: 295
Period size: 40 Copynumber: 6.0 Consensus size: 40
226159909 ATGATACCCA
* * * * **
226159919 GGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
* * * *
226159959 GGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATATCCG
*
226159999 GGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
*
226160039 GGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
* *
226160079 GGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
* * ** *
226160119 GGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
226160159 G
1 G
226160160 TTGTATTCCG
Statistics
Matches: 179, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 177 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCG
Found at i:226163080 original size:38 final size:39
Alignment explanation
Indices: 226162967--226163109 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
226162957 CCGCACAAAG
*
226162967 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
226163007 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
226163046 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
226163084 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
226163110 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:226163088 original size:77 final size:79
Alignment explanation
Indices: 226162927--226163108 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
226162917 TCGTTCAAAC
* * **
226162927 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
226162992 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
226163007 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
226163070 CAATTTGCACAATT
66 CAATTTGCACAATT
226163084 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
226163109 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:226171103 original size:38 final size:39
Alignment explanation
Indices: 226170990--226171132 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
226170980 CCGCACAAAG
*
226170990 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
226171030 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
226171069 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
226171107 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
226171133 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:226171111 original size:77 final size:79
Alignment explanation
Indices: 226170950--226171131 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
226170940 TCGTTCAAAC
* * **
226170950 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
226171015 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
226171030 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
226171093 CAATTTGCACAATT
66 CAATTTGCACAATT
226171107 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
226171132 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:226178470 original size:39 final size:39
Alignment explanation
Indices: 226178392--226178541 Score: 273
Period size: 39 Copynumber: 3.8 Consensus size: 39
226178382 TATGGTAGCC
* *
226178392 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
226178432 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
226178471 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
226178510 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
226178542 TACCCGAACA
Statistics
Matches: 108, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 91 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:226182233 original size:2 final size:2
Alignment explanation
Indices: 226182226--226182250 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
226182216 TCGATCGGAG
226182226 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
226182251 GAGTACGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:226182374 original size:29 final size:29
Alignment explanation
Indices: 226182350--226182527 Score: 274
Period size: 29 Copynumber: 6.2 Consensus size: 29
226182340 TCGCACACCC
* *
226182350 AGTGCCGTATATTTCTAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
226182379 AGTACCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
226182408 AGTGCCATAT-TTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
* *
226182436 AGTG-C-TATGTTTCCAGCATGCACACTC
1 AGTGCCATATATTTCCAGCATGCACACTT
226182463 AGTGCCATAT-TTTCCAGCATGCCACACTT
1 AGTGCCATATATTTCCAGCATG-CACACTT
226182492 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
226182521 AGTGCCA
1 AGTGCCA
226182528 ATCTCGTCAC
Statistics
Matches: 138, Mismatches: 6, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
26 3 0.02
27 22 0.16
28 34 0.25
29 68 0.49
30 11 0.08
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:226186631 original size:27 final size:27
Alignment explanation
Indices: 226186601--226186856 Score: 327
Period size: 27 Copynumber: 9.5 Consensus size: 27
226186591 ACACTAGACC
*
226186601 CCCTTATATGATAAAATGACTATTTTT
1 CCCTTATGTGATAAAATGACTATTTTT
226186628 CCCTTATGTGATAAAATGACTATTTTT
1 CCCTTATGTGATAAAATGACTATTTTT
*
226186655 CCCTTATGTGATAAAATGACTATTTTA
1 CCCTTATGTGATAAAATGACTATTTTT
* *
226186682 CCCTTATCTGATAAAATGACTATTTTG
1 CCCTTATGTGATAAAATGACTATTTTT
* * *
226186709 CCTTTTTGTGATAAAATGACTATTTTG
1 CCCTTATGTGATAAAATGACTATTTTT
*
226186736 CCCTTATGTGATAAAATGACTAATTTT
1 CCCTTATGTGATAAAATGACTATTTTT
* *
226186763 CCCTTATTTGATAAAATAACTATTTTT
1 CCCTTATGTGATAAAATGACTATTTTT
* * * * * *
226186790 CCCTCATATGGTAAAATGATTGTTTTG
1 CCCTTATGTGATAAAATGACTATTTTT
*
226186817 CCCTTATGT-AGTAGAATGACTATTTTGT
1 CCCTTATGTGA-TAAAATGACTATTTT-T
226186845 CCC-TATGTGATA
1 CCCTTATGTGATA
226186857 TATGTTTATA
Statistics
Matches: 198, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
27 194 0.98
28 4 0.02
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.43
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACTATTTTT
Found at i:226189213 original size:20 final size:20
Alignment explanation
Indices: 226189188--226189243 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
226189178 TCAACTTTTA
226189188 AATCAAGTTAAAATGATT-TC
1 AATCAAGTTAAAAT-ATTGTC
* *
226189208 AATCAAGTTAGAATTTTGTC
1 AATCAAGTTAAAATATTGTC
*
226189228 AATC-AGTTAAATTATT
1 AATCAAGTTAAAATATT
226189244 TTTAAAACAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 11 0.37
20 19 0.63
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (20 bp):
AATCAAGTTAAAATATTGTC
Found at i:226195488 original size:15 final size:15
Alignment explanation
Indices: 226195464--226195505 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
226195454 CCCTCTCAAT
*
226195464 AATTAATATTATTAG
1 AATTATTATTATTAG
* *
226195479 TATTATTATTATTTG
1 AATTATTATTATTAG
226195494 AATTATTATTAT
1 AATTATTATTAT
226195506 GTTAGGGATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
AATTATTATTATTAG
Found at i:226199111 original size:40 final size:40
Alignment explanation
Indices: 226199066--226199232 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
226199056 CGGAATATAA
226199066 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
226199106 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
226199146 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
226199186 CCGGATATAATTC-C-AGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA-TCACTAGCACAAATGCCTTCGGGTCTTAGC
226199225 CCGGATAT
1 CCGGATAT
226199233 CATTCAATTT
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 30 0.28
40 77 0.71
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:226205968 original size:26 final size:26
Alignment explanation
Indices: 226205906--226206014 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
226205896 TGATACAAAT
226205906 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
226205931 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
226205957 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
226205983 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
226206009 TGATAA
1 TGATAA
226206015 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 21 0.26
26 59 0.74
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:226208029 original size:135 final size:135
Alignment explanation
Indices: 226207787--226208069 Score: 516
Period size: 135 Copynumber: 2.1 Consensus size: 135
226207777 GAGTAGTCTC
226207787 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
226207852 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
226207917 TGTTA
131 TGTTA
226207922 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAAT-GGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
226207986 TGTTATCTGAATAAGGGGCTAAGGCCCAG-TTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTA-T-TAATCTGAAAAGGGCTCTGGCCCAGTACC
226208050 ACTGTTA
129 ACTGTTA
**
226208057 CCTGAATGGGCTT
1 CCCAAATGGGCTT
226208070 AGGCCCAATA
Statistics
Matches: 144, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
133 3 0.02
134 46 0.32
135 95 0.66
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (135 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
TGTTA
Found at i:226211897 original size:26 final size:26
Alignment explanation
Indices: 226211836--226211969 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
226211826 TGATACAAAT
*
226211836 TGATAATAGGTTAGGTAAAT-TT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
226211860 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
226211886 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
226211912 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
226211938 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
226211964 TGATAA
1 TGATAA
226211970 GAATTTCATG
Statistics
Matches: 106, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
24 20 0.19
25 2 0.02
26 84 0.79
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:226214702 original size:2 final size:2
Alignment explanation
Indices: 226214697--226214728 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
226214687 TATATGAAAG
226214697 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
226214729 AGTTTTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:226214781 original size:3 final size:3
Alignment explanation
Indices: 226214775--226214857 Score: 55
Period size: 3 Copynumber: 27.0 Consensus size: 3
226214765 AGAAATATAC
* * *
226214775 TAA TAA TGA TAA TAA TAA TAA TAG TAA TAA T-A TAAA TAT TATA TACA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TA-A TA-A
* *
226214822 TACA -AG T-A TAA TAA TAA TAAA TAA CAA TAA TAA TAA
1 TA-A TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
226214858 ATATATAAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
2 3 0.05
3 48 0.76
4 12 0.19
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:226217843 original size:17 final size:18
Alignment explanation
Indices: 226217801--226217849 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
226217791 AGTTGAAAAG
226217801 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
226217820 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
226217837 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
226217850 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:226218738 original size:40 final size:40
Alignment explanation
Indices: 226218672--226218822 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
226218662 AAATTGAATG
* * *
226218672 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
226218711 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
226218751 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
226218791 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
226218823 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:226218836 original size:40 final size:40
Alignment explanation
Indices: 226218708--226218838 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
226218698 TATGCTGGAA
* * * *
226218708 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
226218748 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
226218788 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
226218828 ATTATATCCGG
1 ATTATATCCGG
226218839 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:226225846 original size:17 final size:18
Alignment explanation
Indices: 226225804--226225852 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
226225794 AGTTGAAAAG
226225804 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
226225823 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
226225840 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
226225853 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:226226740 original size:40 final size:40
Alignment explanation
Indices: 226226674--226226840 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
226226664 AAATTGAATG
* * *
226226674 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
226226713 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
226226753 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
226226793 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
226226833 ATATCCGG
1 ATATCCGG
226226841 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:226232171 original size:49 final size:49
Alignment explanation
Indices: 226232110--226232364 Score: 371
Period size: 49 Copynumber: 5.3 Consensus size: 49
226232100 ATGTATGAGA
226232110 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
226232159 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
226232208 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
226232255 TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
226232304 --TATA-ATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
226232350 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
226232365 TCCCGAAGGG
Statistics
Matches: 193, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
46 37 0.19
47 55 0.28
48 8 0.04
49 93 0.48
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:226232220 original size:98 final size:97
Alignment explanation
Indices: 226232110--226232364 Score: 369
Period size: 96 Copynumber: 2.7 Consensus size: 97
226232100 ATGTATGAGA
226232110 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATATGTGATAA
* *
226232175 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
65 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
226232208 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAG-GTGTATATATGTGATAAG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGTGTATATATATGTGATAAG
226232272 GCCGAATGGCCAATGTGATGAATGTGAAAGTG
66 GCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * * *
226232304 --TATA-ATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTGTATA-A-ATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT-GAAGTGTATATATATGTGATAA
226232364 G
65 G
226232365 TCCCGAAGGG
Statistics
Matches: 145, Mismatches: 10, Indels: 9
0.88 0.06 0.05
Matches are distributed among these distances:
93 39 0.27
94 9 0.06
95 4 0.03
96 47 0.32
97 3 0.02
98 43 0.30
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (97 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGTGTATATATATGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:226234544 original size:40 final size:40
Alignment explanation
Indices: 226234478--226234709 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
226234468 GAGAATTGAG
* * *
226234478 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
226234518 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
226234558 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
226234598 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * *
226234638 AGTAATGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
226234678 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
226234710 ATCATGCTGG
Statistics
Matches: 179, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:226238881 original size:49 final size:48
Alignment explanation
Indices: 226238821--226239074 Score: 370
Period size: 47 Copynumber: 5.3 Consensus size: 48
226238811 GTATGAGATA
226238821 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
*
226238870 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
226238919 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* *
226238966 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
* * * * * * *
226239013 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
*
226239060 TATAAATGTGATAAG
1 TATATATGTGATAAG
226239075 TCCCGAAGGG
Statistics
Matches: 193, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 99 0.51
48 5 0.03
49 89 0.46
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (48 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTG
Found at i:226242546 original size:40 final size:40
Alignment explanation
Indices: 226242444--226242627 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
226242434 AAATTGAATG
* * * * * *
226242444 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
226242484 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
226242524 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
226242564 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
226242604 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
226242628 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 114 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:226242652 original size:80 final size:80
Alignment explanation
Indices: 226242484--226242672 Score: 184
Period size: 80 Copynumber: 2.4 Consensus size: 80
226242474 GCTGGAAATT
* * *
226242484 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
***
226242549 TTCGTGCAAGTTGTT
66 TTCGTGCAAGTTACC
* * * * *
226242564 A-AATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 ATAA-CCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGG
* * **
226242627 CCTTGGTGCGGGTTACC
64 CATTCGTGCAAGTTACC
* * *
226242644 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
226242673 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
79 3 0.03
80 82 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCAAGTTACC
Found at i:226250665 original size:40 final size:39
Alignment explanation
Indices: 226250498--226250667 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
226250488 AGAAATTGAA
*
226250498 TGATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
226250537 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
226250577 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
226250617 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
226250657 TGATATCCGGG
1 TGATATCCGGG
226250668 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 18 0.17
40 81 0.76
41 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:226254959 original size:40 final size:39
Alignment explanation
Indices: 226254794--226254977 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
226254784 AAATTGAATG
* * *
226254794 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
226254834 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
226254874 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
226254914 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
226254953 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
226254978 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:226255002 original size:80 final size:81
Alignment explanation
Indices: 226254834--226255022 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
226254824 GCTGGAAATT
* * * *
226254834 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
226254899 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
226254915 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
226254978 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
226254994 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
226255023 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:226258895 original size:29 final size:29
Alignment explanation
Indices: 226258861--226258935 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
226258851 TACTCGATTT
* *
226258861 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATGCCATTCAAGCC
** * * *
226258890 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCCATTCAAGCC
226258919 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
226258936 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.23, C:0.36, G:0.20, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCCATTCAAGCC
Found at i:226266741 original size:28 final size:29
Alignment explanation
Indices: 226266710--226266783 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
226266700 TACTCGATTT
* *
226266710 CGCACACTTAGTGCCATGCGATT-TAGCC
1 CGCACACTTAGTGCCATGCCATTCGAGCC
** * *
226266738 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCCATTCGAGCC
226266767 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
226266784 ATATTCCAGC
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.22, C:0.36, G:0.20, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCCATTCGAGCC
Found at i:226266805 original size:27 final size:29
Alignment explanation
Indices: 226266767--226266838 Score: 121
Period size: 27 Copynumber: 2.6 Consensus size: 29
226266757 CCTTCGAGCT
226266767 CGCACACTTAGTGCCATATA-TTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
226266795 TGC-CACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
226266823 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
226266839 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 16 0.40
28 12 0.30
29 12 0.30
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:226271694 original size:46 final size:46
Alignment explanation
Indices: 226271644--226271819 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
226271634 TGGTTGAGCA
*
226271644 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
226271690 TCCGAACTCGTTGAGTTGAGTCCGAATTC-GTGA--GATGC-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
226271735 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
226271783 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
226271820 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 3 0.03
46 60 0.55
47 28 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:226271800 original size:93 final size:93
Alignment explanation
Indices: 226271641--226271812 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
226271631 GGATGGTTGA
* * *
226271641 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
226271706 TGAGTCCGAATTCGTGAGATGCAACTAG
66 TGAGTCCGAATTCGTGAGATGCAACTAG
* *
226271734 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
226271799 TGAGTCCGAGTTCG
66 TGAGTCCGAATTCG
226271813 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAATTCGTGAGATGCAACTAG
Found at i:226273658 original size:222 final size:222
Alignment explanation
Indices: 226273265--226273705 Score: 794
Period size: 222 Copynumber: 2.0 Consensus size: 222
226273255 TTTATTTAAA
226273265 CTAGGATGATTATTTTGATTGAATAATATTTATTCGATTCATGCTTATAATATTTGTGCCTTAGT
1 CTAGGATGATTATTTTGATTGAATAATATTTATTCGATTCATGCTTATAATATTTGTGCCTTAGT
* *
226273330 CGATCATGTTTTCAATTAAAATCAAGTCTGTATTTCGTTCGTACGTGATTGAATTGCACCTGAAT
66 CGATCATGTTTTCAATTAAAATCAAGTCTGTATTTCGTTCGTACGTGATTGAAATGCACCTAAAT
*
226273395 TAGCTGAGCGATCCTAACCAAACGACGGCTAATGAACACATAATTGAAATGTGCATGCTCAATTT
131 TAGCTGAGCGATCCTAACCAAACGACAGCTAATGAACACATAATTGAAATGTGCATGCTCAATTT
226273460 AGAT-CTTAACCCGATTAAATTGCAGGT
196 AGATGC-TAACCCGATTAAATTGCAGGT
*
226273487 CTAGGATGATTATTTTGATTGAATAATATTTATTTGATTCATGCTTATAATATTTGTGCCTTAGT
1 CTAGGATGATTATTTTGATTGAATAATATTTATTCGATTCATGCTTATAATATTTGTGCCTTAGT
226273552 CGATCATGTTTTCAATTAAAATCAAGTCTGTATTTCGTTCGTACGTGATTGAAATGCACCTAAAT
66 CGATCATGTTTTCAATTAAAATCAAGTCTGTATTTCGTTCGTACGTGATTGAAATGCACCTAAAT
* * * *
226273617 TAGCTGAGTGATCCTAACCAGATGACAGCTAATGGACACATAATTGAAATGTGCATGCTCAATTT
131 TAGCTGAGCGATCCTAACCAAACGACAGCTAATGAACACATAATTGAAATGTGCATGCTCAATTT
226273682 AGATGCTAACCCGATTAAATTGCA
196 AGATGCTAACCCGATTAAATTGCA
226273706 AGTTGCATAA
Statistics
Matches: 210, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
222 209 1.00
223 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (222 bp):
CTAGGATGATTATTTTGATTGAATAATATTTATTCGATTCATGCTTATAATATTTGTGCCTTAGT
CGATCATGTTTTCAATTAAAATCAAGTCTGTATTTCGTTCGTACGTGATTGAAATGCACCTAAAT
TAGCTGAGCGATCCTAACCAAACGACAGCTAATGAACACATAATTGAAATGTGCATGCTCAATTT
AGATGCTAACCCGATTAAATTGCAGGT
Found at i:226278698 original size:28 final size:28
Alignment explanation
Indices: 226278629--226278729 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
226278619 GACAAGATTG
* * * *
226278629 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
226278659 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
226278687 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
226278716 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
226278730 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:226282027 original size:28 final size:28
Alignment explanation
Indices: 226281962--226282062 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
226281952 ATAGTGAATC
*
226281962 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
226281991 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
226282019 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
226282049 CGCACACTTAGTGC
1 CGCACACTTAGTGC
226282063 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:226289975 original size:28 final size:28
Alignment explanation
Indices: 226289910--226290010 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
226289900 ATAGTGAATC
*
226289910 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
226289939 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
226289967 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
226289997 CGCACACTTAGTGC
1 CGCACACTTAGTGC
226290011 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:226297923 original size:28 final size:28
Alignment explanation
Indices: 226297858--226297958 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
226297848 ATAGTGAATC
*
226297858 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
226297887 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
226297915 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
226297945 CGCACACTTAGTGC
1 CGCACACTTAGTGC
226297959 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:226303503 original size:9 final size:10
Alignment explanation
Indices: 226303496--226303551 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
226303486 AAGAGAAAAC
226303496 AAAGAAAAGA
1 AAAGAAAAGA
226303506 AAAGAAAAAGCA
1 AAAG-AAAAG-A
226303518 AAAG--AAGA
1 AAAGAAAAGA
226303526 AAAGAAAACGA
1 AAAGAAAA-GA
226303537 AATA-AAAAGA
1 AA-AGAAAAGA
226303547 AAAGA
1 AAAGA
226303552 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
8 5 0.13
9 4 0.10
10 11 0.28
11 13 0.33
12 6 0.15
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:226303519 original size:21 final size:20
Alignment explanation
Indices: 226303485--226303551 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 20
226303475 ACATTTTTGT
226303485 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
226303506 AAAGAAAAAGCAAAAGAAGA
1 AAAGAAAAAGCAAAAAAAGA
* *
226303526 AAAGAAAACGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
226303547 AAAGA
1 AAAGA
226303552 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
20 20 0.50
21 20 0.50
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.01
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:226303520 original size:6 final size:5
Alignment explanation
Indices: 226303496--226303551 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
226303486 AAGAGAAAAC
226303496 AAAGA AAAGA AAAGAA AAAGCA AAAG- -AAGA AAAGA AAACGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
226303542 AAAGA AAAGA
1 AAAGA AAAGA
226303552 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
3 3 0.07
4 1 0.02
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:226303629 original size:12 final size:12
Alignment explanation
Indices: 226303621--226303645 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
226303611 TTTGAAAAGC
226303621 AAAAAGAAAATG
1 AAAAAGAAAATG
226303633 AAAAAGAAAATG
1 AAAAAGAAAATG
226303645 A
1 A
226303646 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:226303642 original size:18 final size:18
Alignment explanation
Indices: 226303615--226303670 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
226303605 AAAGCCTTTG
226303615 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
226303634 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
226303652 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
226303669 AA
1 AA
226303671 TCTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:226303655 original size:30 final size:31
Alignment explanation
Indices: 226303621--226303702 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
226303611 TTTGAAAAGC
*
226303621 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
226303651 AAAAAGAGAACG-AAAAGAAATCTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
226303681 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
226303703 TGAAGCAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.02, G:0.22, T:0.11
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:226321708 original size:22 final size:21
Alignment explanation
Indices: 226321683--226321731 Score: 73
Period size: 20 Copynumber: 2.3 Consensus size: 21
226321673 TATGCTAACC
*
226321683 TCATTTTATCTTATACCACAAA
1 TCATTTT-TCATATACCACAAA
226321705 TCA-TTTTCATATACCACAAA
1 TCATTTTTCATATACCACAAA
226321725 TCATTTT
1 TCATTTT
226321732 CACCACATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 16 0.64
21 6 0.24
22 3 0.12
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (21 bp):
TCATTTTTCATATACCACAAA
Found at i:226321719 original size:20 final size:20
Alignment explanation
Indices: 226321694--226321733 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
226321684 CATTTTATCT
226321694 TATACCACAAATCATTTTCA
1 TATACCACAAATCATTTTCA
226321714 TATACCACAAATCATTTTCA
1 TATACCACAAATCATTTTCA
226321734 CCACATTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (20 bp):
TATACCACAAATCATTTTCA
Found at i:226322011 original size:71 final size:71
Alignment explanation
Indices: 226321927--226322090 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
226321917 CGATTTGTCT
226321927 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
226321992 CTTTCA
66 CTTTCA
226321998 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
226322063 CTTTCA
66 CTTTCA
226322069 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
226322091 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:226322128 original size:71 final size:70
Alignment explanation
Indices: 226321927--226322124 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
226321917 CGATTTGTCT
* * * *
226321927 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
226321992 CTTTCA
65 CTTTCA
* * * *
226321998 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
226322063 CTTTCA
65 CTTTCA
* *
226322069 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
226322125 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:226329398 original size:12 final size:11
Alignment explanation
Indices: 226329365--226329394 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
226329355 AATGATATTT
226329365 AAATATATATA
1 AAATATATATA
226329376 ATAATATATATA
1 A-AATATATATA
226329388 AAATATA
1 AAATATA
226329395 ATATTAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
AAATATATATA
Found at i:226329611 original size:13 final size:14
Alignment explanation
Indices: 226329593--226329623 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
226329583 ATGTACGAAT
226329593 ATATACATATA-TA
1 ATATACATATATTA
226329606 ATATACATATATTA
1 ATATACATATATTA
226329620 ATAT
1 ATAT
226329624 TAATAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:226330194 original size:24 final size:22
Alignment explanation
Indices: 226330167--226330212 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
226330157 GGGAAAGGAA
226330167 AAAAAAAAGAGAGAAGAGGGAGAG
1 AAAAAAAAG-G-GAAGAGGGAGAG
*
226330191 AAAAGAAAGGGAAGAGGGAGAG
1 AAAAAAAAGGGAAGAGGGAGAG
226330213 GGAGCTCCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
23 1 0.05
24 8 0.38
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (22 bp):
AAAAAAAAGGGAAGAGGGAGAG
Found at i:226331757 original size:67 final size:68
Alignment explanation
Indices: 226331470--226331777 Score: 530
Period size: 68 Copynumber: 4.5 Consensus size: 68
226331460 TTAAAAACAG
226331470 AAATTAAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAA
1 AAATT-AAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAA
*
226331535 ATGA
65 ACGA
*
226331539 AAGTTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
226331604 CGA
66 CGA
226331607 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
226331672 CGA
66 CGA
* * * *
226331675 AAATTAAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-CTTTGAAAAGTAGATTTTGAAAAA
1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
226331739 CGA
66 CGA
*
226331742 AAATTAAAGGCTCAACTCA-CTCTCGCAATATGAGTT
1 AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTT
226331778 GATCTTTGAA
Statistics
Matches: 232, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
66 17 0.07
67 44 0.19
68 167 0.72
69 4 0.02
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (68 bp):
AAATTAAAGGCTCAACTCACCTCTCGCAACATGAGTTAATAATTTGAAAAGTAGATTTTGAGAAA
CGA
Found at i:226331994 original size:73 final size:70
Alignment explanation
Indices: 226331827--226332075 Score: 268
Period size: 71 Copynumber: 3.5 Consensus size: 70
226331817 ATTAAAAAGA
* * * * *
226331827 CTCAACTCACCTT-TCGCAATATGAATTAACTTTT-GAAAATATAATTTGAAAATACCTTAGCGT
1 CTCAACTCA-CTTCTCGCAATATGAGTTGA-TTTTAGAAAA-ATAAATTGAAATTACCTCAGCGT
*
226331890 GCCGCAAGG
63 GCC-CGAGG
**
226331899 CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGA-AAAATA--AATTGAAATTACCTCAGCGT
226331964 GCCCGAGG
63 GCCCGAGG
* * * *
226331972 TTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAAAATAAATTGAAATTACCTCAACGTGTC
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGAAAAATAAATTGAAATTACCTCAGCGTG-C
**
226332037 TTGAGG
65 CCGAGG
* *
226332043 CTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTT
226332076 TTGGAAAACA
Statistics
Matches: 151, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
70 20 0.13
71 41 0.27
72 32 0.21
73 38 0.25
74 20 0.13
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.33
Consensus pattern (70 bp):
CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGAAAAATAAATTGAAATTACCTCAGCGTGCC
CGAGG
Found at i:226332065 original size:71 final size:70
Alignment explanation
Indices: 226331827--226332076 Score: 275
Period size: 73 Copynumber: 3.5 Consensus size: 70
226331817 ATTAAAAAGA
* * * * * * *
226331827 CTCAACTCACCTTTCGCAATATGAATTAACTTTTGAAAATATAATTTGAAAATACCTTAGCGTGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA-ATAAATTGAAATTACCTCAGCGTGC
*
226331892 CGCAAGG
65 C-CGAGG
* * **
226331899 CTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAATAGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAAATA--AATTGAAATTACCTCAGCGT
226331964 GCCCGAGG
63 GCCCGAGG
* * * *
226331972 TTCAACTCACTTCTCGCGATATGAGTTGATTTTTGAAAAATAAATTGAAATTACCTCAACGTGTC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAATTACCTCAGCGTG-C
**
226332037 TTGAGG
65 CCGAGG
*
226332043 CTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
226332077 TGGAAAACAT
Statistics
Matches: 150, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
70 20 0.13
71 35 0.23
72 37 0.25
73 38 0.25
74 20 0.13
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (70 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTGAAATTACCTCAGCGTGCC
CGAGG
Found at i:226332213 original size:69 final size:68
Alignment explanation
Indices: 226332101--226332230 Score: 206
Period size: 69 Copynumber: 1.9 Consensus size: 68
226332091 TTAAAAGCAG
* * *
226332101 AAATTGAAATACCTCAGCGTGCCCTGAGGCTCAACTCATTCTCGCAATATGAGTTGATTTTTGAA
1 AAATTGAAATACCTCAACGTGCCCTGAGGCTCAACTCACTCTCGCAATATGAGCTGATTTTTGAA
226332166 CAT
66 CAT
* *
226332169 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACTCTCGCAATATGAGCTGATTTT
1 AAATTGAAA-TACCTCAACGTGCCCTGAGGCTCAACTCACTCTCGCAATATGAGCTGATTTT
226332231 CTTGGAAAAC
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
68 9 0.16
69 47 0.84
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (68 bp):
AAATTGAAATACCTCAACGTGCCCTGAGGCTCAACTCACTCTCGCAATATGAGCTGATTTTTGAA
CAT
Found at i:226332364 original size:160 final size:160
Alignment explanation
Indices: 226331944--226332640 Score: 1284
Period size: 160 Copynumber: 4.4 Consensus size: 160
226331934 ATTTAATAGG
* * *
226331944 AATTGAAATTACCTCAGCGTGCCC-GAGGTTCAACTCACTTCTCGCGATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
*
226332008 AAAATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
226332073 TTT-TTGGAAAACATGAATTTAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
226332102 AATTG-AAATACCTCAGCGTGCCCTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGATTTTTG-
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
226332164 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA-CTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
226332228 TTTCTTGGAAAACATGAATTTAAAAAGCAGA
131 TTTCTTGGAAAACATGAA-TTAAAAAGCAGA
226332259 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
226332324 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
226332389 TTTCTTGGAAAACATGAATTAAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
226332419 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
226332484 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA-CTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
226332548 TTTCTTGGAAAACATGAA-TAAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
226332577 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
226332641 GAAAAAACAA
Statistics
Matches: 527, Mismatches: 5, Indels: 14
0.97 0.01 0.03
Matches are distributed among these distances:
155 23 0.04
156 57 0.11
157 57 0.11
158 124 0.24
159 63 0.12
160 165 0.31
161 38 0.07
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (160 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGCAGA
Found at i:226332374 original size:71 final size:71
Alignment explanation
Indices: 226332258--226332391 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
226332248 TAAAAAGCAG
* * *
226332258 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
226332323 AAACAT
66 AAACAT
* * *
226332329 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
226332392 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Done.