Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 716 of 770
Found at i:226345456 original size:25 final size:25
Alignment explanation
Indices: 226345428--226345480 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
226345418 ATATTATGTG
*
226345428 AAATAATGTATAGAATACA-ATATTA
1 AAAT-ATGTACAGAATACACATATTA
* *
226345453 AAATATTTACATAATACACATATTA
1 AAATATGTACAGAATACACATATTA
226345478 AAA
1 AAA
226345481 ATAACTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.57, C:0.08, G:0.04, T:0.32
Consensus pattern (25 bp):
AAATATGTACAGAATACACATATTA
Found at i:226345491 original size:25 final size:24
Alignment explanation
Indices: 226345441--226345493 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
226345431 TAATGTATAG
**
226345441 AATACAATATTAAAATATTTACAT
1 AATACAATATTAAAATAACTACAT
226345465 AATACACATATTAAAAATAACTA-AT
1 AATACA-ATATT-AAAATAACTACAT
226345490 AATA
1 AATA
226345494 ATATTCCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.24
25 11 0.44
26 8 0.32
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.32
Consensus pattern (24 bp):
AATACAATATTAAAATAACTACAT
Found at i:226346776 original size:16 final size:16
Alignment explanation
Indices: 226346755--226346786 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
226346745 TTTTGTGTAA
*
226346755 TGGGCTGTTAGTTTAG
1 TGGGCTGGTAGTTTAG
226346771 TGGGCTGGTAGTTTAG
1 TGGGCTGGTAGTTTAG
226346787 GTTATTGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.06, G:0.41, T:0.41
Consensus pattern (16 bp):
TGGGCTGGTAGTTTAG
Found at i:226349633 original size:39 final size:39
Alignment explanation
Indices: 226349552--226349714 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
226349542 TATGGTAACC
* *
226349552 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
226349592 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
226349631 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
226349670 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
226349709 CGCACA
1 CGCACA
226349715 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:226358009 original size:17 final size:18
Alignment explanation
Indices: 226357967--226358015 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
226357957 AGTTGAAAAG
226357967 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
226357986 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
226358003 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
226358016 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:226358903 original size:40 final size:40
Alignment explanation
Indices: 226358837--226359003 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
226358827 AAATTGAATG
* * *
226358837 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
226358876 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
226358916 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
226358956 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
226358996 ATATCCGG
1 ATATCCGG
226359004 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:226366012 original size:17 final size:18
Alignment explanation
Indices: 226365970--226366018 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
226365960 AGTTGAAAAG
226365970 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
226365989 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
226366006 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
226366019 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:226366907 original size:40 final size:40
Alignment explanation
Indices: 226366841--226367007 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
226366831 AAATTGAATG
* * *
226366841 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
226366880 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
226366920 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
226366960 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
226367000 ATATCCGG
1 ATATCCGG
226367008 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:226368774 original size:39 final size:39
Alignment explanation
Indices: 226368693--226368855 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
226368683 TATGGTAACC
* *
226368693 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
226368733 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
226368772 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
226368811 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
226368850 CGCACA
1 CGCACA
226368856 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:226377957 original size:40 final size:40
Alignment explanation
Indices: 226377912--226378078 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
226377902 CGGAATATAA
226377912 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
226377952 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
226377992 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
226378032 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
226378071 CCGGATAT
1 CCGGATAT
226378079 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:226385237 original size:40 final size:40
Alignment explanation
Indices: 226385182--226385389 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
226385172 TGAATGATAC
* * *
226385182 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
226385222 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
226385262 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
226385302 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
226385342 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
226385382 CC-GGCTAA
1 CCGGGCTAA
226385390 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 147 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:226393854 original size:40 final size:39
Alignment explanation
Indices: 226393794--226393903 Score: 132
Period size: 39 Copynumber: 2.8 Consensus size: 39
226393784 AATATCACGT
* *
226393794 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA
* * *
226393834 GCACGAATGCCTTCGGGTCTTAG-CCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA
*
226393873 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
226393904 TAATTTCCAG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
38 2 0.03
39 30 0.49
40 29 0.48
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA
Found at i:226393921 original size:40 final size:40
Alignment explanation
Indices: 226393794--226393943 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
226393784 AATATCACGT
* * *
226393794 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATAAC-CA
* *** *
226393834 GCACGAA-TGCCTTCGGGTCTT-AGCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACCA
**
226393873 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACCA
* * *
226393913 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAACCCGGATAT
226393944 CATTCAATTT
Statistics
Matches: 90, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 41 0.46
40 45 0.50
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACCA
Found at i:226393927 original size:79 final size:79
Alignment explanation
Indices: 226393794--226393943 Score: 189
Period size: 79 Copynumber: 1.9 Consensus size: 79
226393784 AATATCACGT
*
226393794 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAG-C
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
226393858 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
226393873 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
226393936 CCGGATAT
64 CCGGATAT
226393944 CATTCAATTT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
78 8 0.13
79 53 0.87
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:226397577 original size:28 final size:28
Alignment explanation
Indices: 226397508--226397608 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
226397498 GACAAGATTG
* * * *
226397508 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
226397538 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
226397566 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
226397595 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
226397609 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:226397602 original size:29 final size:28
Alignment explanation
Indices: 226397537--226397608 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
226397527 AAAATTGTAC
*
226397537 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
226397565 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
226397594 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
226397609 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:226401623 original size:40 final size:41
Alignment explanation
Indices: 226401536--226401686 Score: 136
Period size: 40 Copynumber: 3.8 Consensus size: 41
226401526 AATTGAATGA
* * * **
226401536 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAGTCA-TAC
* *
226401576 TAACCGGGTTAAGACCCGAAGGCAATTGTGCT-AGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAGT--CATAC
*
226401617 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTG-TGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCTGAGTCATAC
*
226401656 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
226401687 AAATCGTGAT
Statistics
Matches: 90, Mismatches: 11, Indels: 19
0.75 0.09 0.16
Matches are distributed among these distances:
38 1 0.01
39 6 0.07
40 81 0.90
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAGTCATAC
Found at i:226401700 original size:40 final size:39
Alignment explanation
Indices: 226401535--226401718 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
226401525 AAATTGAATG
* * *
226401535 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
226401575 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * ** * *
226401615 ACATCCGGGCTAAGACCCGAAGGCATTCGTGTGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
226401655 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
226401694 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
226401719 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 102 0.92
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:226408978 original size:40 final size:39
Alignment explanation
Indices: 226408813--226408996 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
226408803 AAATTGAATG
* * *
226408813 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
226408853 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
226408893 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
226408933 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
226408972 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
226408997 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:226409021 original size:80 final size:81
Alignment explanation
Indices: 226408853--226409041 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
226408843 GCTGGAAATT
* * * *
226408853 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
226408918 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
226408934 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
226408997 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
226409013 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
226409042 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:226415726 original size:40 final size:40
Alignment explanation
Indices: 226415682--226415907 Score: 314
Period size: 40 Copynumber: 5.7 Consensus size: 40
226415672 CCAACCCAAT
* * *
226415682 TGCCTTCGGGATTTAGCCC-G-AATGCAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAAT--AACAACCAGCACGAA
* * * *
226415722 TGCCTTTGGGACTTAACCCGGAAATAGCGACCAGCAAGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
226415762 TGCCTTCGGG-CTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* *
226415801 TGCCTTCGGGACTTAACTCGGAAATAACAACCAGCATGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
226415841 TGCCTTCGGGACTTAACCCGGAAATAGCAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
226415881 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
226415908 TCCTCAATTG
Statistics
Matches: 165, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 36 0.22
40 125 0.76
41 1 0.01
42 3 0.02
ACGTcount: A:0.32, C:0.28, G:0.22, T:0.18
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
Found at i:226415814 original size:79 final size:80
Alignment explanation
Indices: 226415682--226415907 Score: 323
Period size: 79 Copynumber: 2.8 Consensus size: 80
226415672 CCAACCCAAT
* * * *
226415682 TGCCTTCGGGATTTAGCCC-G-AATGCAACAACCAGCACAAATGCCTTTGGGACTTAACCCGGAA
1 TGCCTTCGGGACTTAACCCGGAAAT--AACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAA
* *
226415745 ATAGCGACCAGCAAGAA
64 ATAACAACCAGCAAGAA
*
226415762 TGCCTTCGGG-CTTAACCCGGAAATAACAACCAGCACGAATGCCTTCGGGACTTAACTCGGAAAT
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAAT
*
226415826 AACAACCAGCATGAA
66 AACAACCAGCAAGAA
* *
226415841 TGCCTTCGGGACTTAACCCGGAAATAGCAACCAGCACGAATGCCTTCGGGACTTAACCCGGATAT
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAAT
226415906 AA
66 AA
226415908 TCCTCAATTG
Statistics
Matches: 132, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
79 65 0.49
80 64 0.48
81 3 0.02
ACGTcount: A:0.32, C:0.28, G:0.22, T:0.18
Consensus pattern (80 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAAT
AACAACCAGCAAGAA
Found at i:226426981 original size:40 final size:38
Alignment explanation
Indices: 226426875--226427023 Score: 140
Period size: 39 Copynumber: 3.8 Consensus size: 38
226426865 ATCACGATTT
*
226426875 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAATGACTA
**
226426914 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAAATG--ACTA
* **
226426954 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-A
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA-AATGACTA
* * *
226426993 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
226427024 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 60 0.65
40 30 0.33
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAAATGACTA
Found at i:226427007 original size:79 final size:78
Alignment explanation
Indices: 226426875--226427022 Score: 192
Period size: 79 Copynumber: 1.9 Consensus size: 78
226426865 ATCACGATTT
* *
226426875 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATGACTCGCACGAATGCCTTCGGGTCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAT-ACTCGCACGAATGCCTTCGGGGCTTAGCCC
226426940 GGATGTAGCCACTA
65 GGATGTAGCCACTA
* * * *
226426954 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAT-TTCAGCA-TAATTGTCTTCGGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATA-AATACTC-GCACGAA-TGCCTTCGGGGCTTAGC
226427017 CCGGAT
63 CCGGAT
226427023 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
78 4 0.07
79 53 0.88
80 3 0.05
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAATACTCGCACGAATGCCTTCGGGGCTTAGCCCG
GATGTAGCCACTA
Found at i:226431271 original size:39 final size:37
Alignment explanation
Indices: 226431174--226431271 Score: 99
Period size: 39 Copynumber: 2.6 Consensus size: 37
226431164 TATGGTATTT
* * * *
226431174 AAAATATATATAT-ATATATGTATATAATAGTATTTA
1 AAAATATATACATAATATATATATATAATAGCATTAA
* * * *
226431210 AGAATATATACATAAGAAATATATAACTAATGGCATTAA
1 AAAATATATACATAATATATATAT-A-TAATAGCATTAA
226431249 AAAATATATACATAATATATATA
1 AAAATATATACATAATATATATA
226431272 AAATACCTAA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
36 11 0.23
37 7 0.15
38 1 0.02
39 29 0.60
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (37 bp):
AAAATATATACATAATATATATATATAATAGCATTAA
Found at i:226431825 original size:24 final size:25
Alignment explanation
Indices: 226431793--226431846 Score: 92
Period size: 24 Copynumber: 2.2 Consensus size: 25
226431783 AGGTTTTCTT
*
226431793 TTTTTCTTTTTTTTT-TGGGTTAGG
1 TTTTTCTTTTTTTTTGGGGGTTAGG
226431817 TTTTTCTTTTTTTTTGGGGGTTAGG
1 TTTTTCTTTTTTTTTGGGGGTTAGG
226431842 TTTTT
1 TTTTT
226431847 TTGGGGGGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 15 0.54
25 13 0.46
ACGTcount: A:0.04, C:0.04, G:0.22, T:0.70
Consensus pattern (25 bp):
TTTTTCTTTTTTTTTGGGGGTTAGG
Found at i:226432923 original size:72 final size:72
Alignment explanation
Indices: 226432715--226433115 Score: 482
Period size: 72 Copynumber: 5.5 Consensus size: 72
226432705 GTGATCTGAA
* *
226432715 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAAATTACCTCA--
* * *
226432780 ATGTGAAC-CGAG
61 ACGTG-TCTTGAG
* * * *
226432792 GCTCAACTCACCTCTCACAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
226432857 TGTCTTAAG
64 TGTCTTGAG
** * *
226432866 GCTCAACTCATTTCTTGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAATGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTG
226432931 TCTTGAG
66 TCTTGAG
* ** *
226432938 GTTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTG
226433003 TCTTGAG
66 TCTTGAG
** * * *
226433010 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTAAAAACAGAAATCGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTG
*
226433075 TC-CGAG
66 TCTTGAG
* *
226433081 GCTCAACTCACCTCTCGAAATATGAGTTGATTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
226433116 TTTTGAAAGG
Statistics
Matches: 296, Mismatches: 27, Indels: 8
0.89 0.08 0.02
Matches are distributed among these distances:
71 34 0.11
72 170 0.57
73 1 0.00
74 31 0.10
76 21 0.07
77 39 0.13
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (72 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTG
TCTTGAG
Found at i:226432995 original size:144 final size:143
Alignment explanation
Indices: 226432715--226433350 Score: 563
Period size: 144 Copynumber: 4.2 Consensus size: 143
226432705 GTGATCTGAA
** * *
226432715 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAAATTACCTCA--
* * *
226432780 ATGTGAACCGAGGCTCAACTCACCTCTCACAATATAAGTTGATTTTTTTGAAAACAGAAATTGAA
61 ATGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAA
226432845 AATACCTCAACGTGTCTTAAG
123 AATACCTCAACGTGTCTTAAG
*
226432866 GCTCAACTCATTTCTTGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAATGTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAATGTG
* * ** * *
226432931 TCTTGAGGTTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCT
66 TC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCT
* *
226432996 CAGCGTGTCTTGAG
130 CAACGTGTCTTAAG
* * **
226433010 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTAAAAACAGAAATCGAAATTACCTCAGCGTG
1 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAATGTG
* *
226433075 TCCGAGGCTCAACTCACCTCTCGAAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAA
66 TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTT--------G--A---AAACA
** * *
226433140 CGAAAATTGAAAATACCTCGGCGTGTGACCTGAG
114 -G-AAATTGAAAATACCTCAACGTGT--CTTAAG
*** * * * ***
226433174 GCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCAT
1 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAATGT
226433239 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAAT
65 GTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAAAT
* * *
226433304 AGCTCAGCGTGTGAGC-CAAG
126 ACCTCAACGTGT---CTTAAG
**
226433324 GCTCAACTCACCTCTCGCAATATGAGT
1 GCTCAACTCATTTCTCGCAATATGAGT
226433351 CGATTTTTTT
Statistics
Matches: 409, Mismatches: 50, Indels: 53
0.80 0.10 0.10
Matches are distributed among these distances:
143 29 0.07
144 100 0.24
145 1 0.00
146 33 0.08
147 4 0.01
148 20 0.05
149 8 0.02
150 48 0.12
151 31 0.08
152 2 0.00
154 1 0.00
155 1 0.00
156 1 0.00
157 1 0.00
160 4 0.01
161 1 0.00
162 21 0.05
164 38 0.09
165 33 0.08
166 32 0.08
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30
Consensus pattern (143 bp):
GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAATGTG
TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTC
AACGTGTCTTAAG
Found at i:226433285 original size:164 final size:161
Alignment explanation
Indices: 226432981--226433302 Score: 466
Period size: 164 Copynumber: 2.0 Consensus size: 161
226432971 TTGAAAACAG
* * ** *
226432981 AAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTA
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGAATTTTA
*
226433046 AAAACAGAAATCGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGAAATATGAGTTGA
66 AAAACAGAAATCGAAATTACCTCAGCATGTCCGAGGCTCAACTCACCTCTCGAAATATGAGTTGA
*
226433111 TTTTTTTTTGAAAGGCAGAAATTGAAAAACGA
131 -TTTTTTTTGAAAGACAGAAATTGAAAAACGA
* * *
226433143 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-ATT
* * * *
226433208 TTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
63 TTAAAAACAGAAATCGAAATTACCTCAGCATGTCC-GAGGCTCAACTCACCTCTCGAAATATGAG
226433273 TTGA-TTTTTTTGAAAGACAGAAATTGAAAA
127 TTGATTTTTTTTGAAAGACAGAAATTGAAAA
226433303 TAGCTCAGCG
Statistics
Matches: 142, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
162 21 0.15
164 56 0.39
165 33 0.23
166 32 0.23
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (161 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGAATTTTA
AAAACAGAAATCGAAATTACCTCAGCATGTCCGAGGCTCAACTCACCTCTCGAAATATGAGTTGA
TTTTTTTTGAAAGACAGAAATTGAAAAACGA
Found at i:226433345 original size:77 final size:77
Alignment explanation
Indices: 226433143--226433380 Score: 333
Period size: 75 Copynumber: 3.1 Consensus size: 77
226433133 TGAAAAACGA
* * *
226433143 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-TTT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
226433207 TTTGACA-ACAG
66 TTTGAAAGACAG
* *
226433218 AAATTGAAATTACCTCAGCATGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
226433281 TTTGAAAGACAG
66 TTTGAAAGACAG
* * *
226433293 AAATTGAAAATAGCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
1 AAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
*
226433357 TTTTTGAAAGGCAG
64 TTTTTGAAAGACAG
226433371 AAATTGAAAA
1 AAATTGAAAA
226433381 ACAGAAATTG
Statistics
Matches: 145, Mismatches: 12, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
73 34 0.23
74 9 0.06
75 44 0.30
77 31 0.21
78 27 0.19
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (77 bp):
AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTGAAAGACAG
Found at i:226433379 original size:14 final size:14
Alignment explanation
Indices: 226433368--226433394 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
226433358 TTTTGAAAGG
226433368 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
226433382 CAGAAATTGAAAA
1 CAGAAATTGAAAA
226433395 TACCTCGGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:226433448 original size:92 final size:90
Alignment explanation
Indices: 226433282--226433469 Score: 236
Period size: 92 Copynumber: 2.1 Consensus size: 90
226433272 GTTGATTTTT
* * * * *
226433282 TTGAAAGACAGAAATTGAAAATAGCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCGCTCACAATAC
226433347 GAGTCGATTTTTTTTGA-AAGGCAGAAA
66 GAGTCGA-TTTTTTTGACAA--CAGAAA
* * * *
226433374 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCGCTCACGATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCGCTCACAATA
*
226433438 CGAGTTGATTTTTTTGACAACAGAAA
65 CGAGTCGATTTTTTTGACAACAGAAA
226433464 TTGAAA
1 TTGAAA
226433470 TTACCTCAGC
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
90 12 0.14
91 11 0.13
92 61 0.73
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (90 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCGCTCACAATAC
GAGTCGATTTTTTTGACAACAGAAA
Found at i:226433507 original size:243 final size:237
Alignment explanation
Indices: 226432955--226433595 Score: 934
Period size: 243 Copynumber: 2.7 Consensus size: 237
226432945 TCATTTCTCG
* * * *
226432955 CAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTC
1 CAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
** * *
226433019 ATTTCTCGCAATATGAGTTGAATTTTAAAAACAGAAATCGAAATTACCTCAGCGTGT--CCGAGG
66 ACCTCTCGCAATATGAGTTG-ATTTTAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCGAGG
*
226433082 CTCAACTCACCTCTCGAAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAAT
130 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAAT
* *
226433147 TGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCG
194 TGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCA
*
226433191 CAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTC
1 CAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
* *
226433256 ACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGTGTGAGCC
66 ACCTCTCGCAATATGAGTTGA---TTTT-AAAAACAGAAATTGAAAATACCTCAGCGTGTGA-CC
* *
226433321 AAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTGAAAGGCAGAAATTGAAAAAC-AG
126 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACGA-
226433385 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCA
190 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCA
* *
226433433 CGATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTCAGGCTCAACT
1 CAATACGAGTTGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
** *
226433498 CACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGC--GTGACCTGA
65 CACCTCTCGCAATATGAGTTGATTTTAAAA-ACAGAAATTGAAAATACCTCAGCGTGTGACC-GA
* *
226433561 GGCTCGACTCACCTCTAGCAATATGAGTTGATTTT
128 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
226433596 GAAAAACAAA
Statistics
Matches: 365, Mismatches: 28, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
236 13 0.04
237 67 0.18
238 37 0.10
239 7 0.02
240 50 0.14
241 1 0.00
242 87 0.24
243 103 0.28
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (237 bp):
CAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
ACCTCTCGCAATATGAGTTGATTTTAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCA
Found at i:226433551 original size:72 final size:72
Alignment explanation
Indices: 226433370--226433608 Score: 248
Period size: 72 Copynumber: 3.3 Consensus size: 72
226433360 TTGAAAGGCA
* * * * * *
226433370 GAAATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCACG
1 GAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCA
*
226433435 ATACGAGTT
64 ATATGAGTT
** * * * *
226433444 GATTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTCAGGCTCAACTCACCTCTCGC
1 GA---AATTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
226433508 AATATGAGTT
63 AATATGAGTT
* * *
226433518 GAAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCAA
1 GAAATTGAAAA-ACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
226433582 TATGAGTT
65 TATGAGTT
**
226433590 GATTTTGAAAAACAAAAAT
1 GAAATTGAAAAACAAAAAT
226433609 AAAAAGACTT
Statistics
Matches: 137, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
71 4 0.03
72 67 0.49
73 4 0.03
74 32 0.23
76 27 0.20
77 3 0.02
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.25
Consensus pattern (72 bp):
GAAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTT
Found at i:226433826 original size:73 final size:71
Alignment explanation
Indices: 226433734--226433922 Score: 245
Period size: 71 Copynumber: 2.6 Consensus size: 71
226433724 ATTAAAAGGT
* * * * * *
226433734 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACTTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGA-AAACAAAAATTGAAAATACCTCAGCGTGA
226433799 CCTGAGGC
64 CCTGAGGC
**
226433807 TCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACACAAAATTGAAAATACCTCAGCGTGAC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACA-AAAATTGAAAATACCTCAGCGTGAC
226433871 CTGAGGC
65 CTGAGGC
* *
226433878 TCGACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAAT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAAT
226433923 AAAAAGGCTT
Statistics
Matches: 101, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
70 5 0.05
71 56 0.55
72 7 0.07
73 33 0.33
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.26
Consensus pattern (71 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTGAAAATACCTCAGCGTGACC
TGAGGC
Found at i:226434010 original size:187 final size:195
Alignment explanation
Indices: 226433648--226434092 Score: 541
Period size: 187 Copynumber: 2.3 Consensus size: 195
226433638 GAGTCAATTT
* * * *
226433648 AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
1 AAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
* * * * *
226433713 AAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAA
66 AAAAAGCAAAAATAAAAAGGTTCAACCCACCTCTCGCAATATGAGTTCAATCTTGACAAACA-AA
* * *
226433778 ATTGAAATTACTTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAA
130 A-T-AAATTACATCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGAAA
226433842 ACA
193 ACA
* * *
226433845 CAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCAATATGAGTTGATTTT
1 -AAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
226433910 GAAAAA-CAAAAATAAAAAGGCTT-AACTCACCTCTCGCAATATGAG-TCAAT-TT-A-AAAC-T
65 GAAAAAGCAAAAATAAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTCAATCTTGACAAACAA
* **
226433968 AA-AAA-TACATCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAA
129 AATAAATTACATCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGAAAA
226434031 CA
194 CA
* * * * * *
226434033 ACAATTAAAAATACCTCAACATGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA
1 AAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
226434093 GTTTCCTTGA
Statistics
Matches: 216, Mismatches: 29, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
187 98 0.45
188 9 0.04
191 2 0.01
193 4 0.02
194 1 0.00
195 2 0.01
196 3 0.01
197 32 0.15
198 65 0.30
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.26
Consensus pattern (195 bp):
AAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
AAAAAGCAAAAATAAAAAGGTTCAACCCACCTCTCGCAATATGAGTTCAATCTTGACAAACAAAA
TAAATTACATCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTGAAAACA
Found at i:226434020 original size:314 final size:314
Alignment explanation
Indices: 226433451--226434030 Score: 1090
Period size: 314 Copynumber: 1.8 Consensus size: 314
226433441 GTTGATTTTT
226433451 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTCAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTCAGGCTCAACTCACCTCTCGCAATATGAG
226433516 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCA
66 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCA
226433581 ATATGAGTTGATTTTGAAAAACAAAAATAAAAAGACTTAACTCACCTCTCGCAATATGAGTCAAT
131 ATATGAGTTGATTTTGAAAAACAAAAATAAAAAGACTTAACTCACCTCTCGCAATATGAGTCAAT
*
226433646 TTAAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
196 TTAAAACTAAAAATACATCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
226433711 TGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
261 TGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
* * *
226433765 TTGACAAACAGAAATTGAAATTACTTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTCAGGCTCAACTCACCTCTCGCAATATGA
226433830 GTTGAAATTAAAACAC-AAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGC
65 GTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGC
*
226433894 AATATGAGTTGATTTTGAAAAACAAAAATAAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAA
130 AATATGAGTTGATTTTGAAAAACAAAAATAAAAAGACTTAACTCACCTCTCGCAATATGAGTCAA
*
226433959 TTTAAAACTAAAAATACATCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
195 TTTAAAACTAAAAATACATCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
226434024 TTGAAAA
260 TTGAAAA
226434031 CAACAATTAA
Statistics
Matches: 259, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
314 187 0.72
315 72 0.28
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (314 bp):
TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTCAGGCTCAACTCACCTCTCGCAATATGAG
TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCGACTCACCTCTAGCA
ATATGAGTTGATTTTGAAAAACAAAAATAAAAAGACTTAACTCACCTCTCGCAATATGAGTCAAT
TTAAAACTAAAAATACATCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
TGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
Found at i:226445472 original size:49 final size:49
Alignment explanation
Indices: 226445408--226445669 Score: 479
Period size: 49 Copynumber: 5.3 Consensus size: 49
226445398 TACATATATG
226445408 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
* *
226445457 TGTGATGAGGCCTAATGACCGATGTGATGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
226445506 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
* *
226445555 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATG
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
*
226445604 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
226445653 TGTGATGAGGCCTAATG
1 TGTGATGAGGCCTAATG
226445670 ACCAATGTAA
Statistics
Matches: 204, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 204 1.00
ACGTcount: A:0.27, C:0.10, G:0.34, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
Found at i:226445823 original size:37 final size:37
Alignment explanation
Indices: 226445780--226445894 Score: 230
Period size: 37 Copynumber: 3.1 Consensus size: 37
226445770 GTTCCGGGCG
226445780 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
226445817 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
226445854 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
226445891 AGAC
1 AGAC
226445895 TTCTTTTATA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 78 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:226447971 original size:29 final size:29
Alignment explanation
Indices: 226447939--226448070 Score: 228
Period size: 29 Copynumber: 4.6 Consensus size: 29
226447929 CGTTAACCGA
226447939 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
226447968 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
* *
226447997 GCACTATGTGTGCGAAATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
226448026 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
226448055 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
226448071 TTTTTCAACA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATCGAG
Found at i:226447978 original size:58 final size:58
Alignment explanation
Indices: 226447907--226448069 Score: 204
Period size: 58 Copynumber: 2.8 Consensus size: 58
226447897 CGAATGATTA
* * *
226447907 GAGGCACTGTGTGTGC-AAATTCCGTTAACCGA-GCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAAA-TCAG-TAACCGAGGCACTATGTGTGCGAAATCAGTAATC
* * *
226447965 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAAATCAGTAATT
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAAATCAGTAATC
* ** *
226448023 GAGGCACTATGTGTGCGAGATCAGTAATTGAGGCACTGTGTGTGCGA
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGA
226448070 GTTTTTCAAC
Statistics
Matches: 95, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 6 0.06
58 87 0.92
59 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (58 bp):
GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAAATCAGTAATC
Found at i:226448008 original size:87 final size:87
Alignment explanation
Indices: 226447907--226448070 Score: 242
Period size: 87 Copynumber: 1.9 Consensus size: 87
226447897 CGAATGATTA
* *
226447907 GAGGCACTGTGTGTGC-AAATTCCGTTAACCGA-GCACTATGTGTGCGAGATCAGTAATCGAGGC
1 GAGGCACTATGTGTGCGAAA-TCAG-TAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGC
226447970 ACTATGTGTGCGAGATCAGTAATC
64 ACTATGTGTGCGAGATCAGTAATC
** *
226447994 GAGGCACTATGTGTGCGAAATCAGTAATTGAGGCACTATGTGTGCGAGATCAGTAATTGAGGCAC
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
*
226448059 TGTGTGTGCGAG
66 TATGTGTGCGAG
226448071 TTTTTCAACA
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
86 5 0.07
87 61 0.88
88 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (87 bp):
GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
TATGTGTGCGAGATCAGTAATC
Found at i:226448652 original size:40 final size:41
Alignment explanation
Indices: 226448554--226448652 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
226448544 TTCGAATGGT
* ** * *
226448554 ATCCGGGCTAAGTCCCGAAGGCGTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
226448595 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TCACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTCACTA-A
226448636 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
226448653 GAACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTCACTAA
Found at i:226451635 original size:49 final size:49
Alignment explanation
Indices: 226451571--226451783 Score: 381
Period size: 49 Copynumber: 4.3 Consensus size: 49
226451561 TACATATATG
*
226451571 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATA
*
226451620 TGTGATGAGGCCTAATGACCGATGTGATGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATA
*
226451669 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATG
1 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATA
* *
226451718 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATA
226451767 TGTGATGAGGCCTAATG
1 TGTGATGAGGCCTAATG
226451784 ACCAATGTAA
Statistics
Matches: 157, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 157 1.00
ACGTcount: A:0.27, C:0.10, G:0.34, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATA
Found at i:226451937 original size:37 final size:37
Alignment explanation
Indices: 226451894--226451971 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
226451884 GTTCCGGGCG
226451894 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
226451931 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
226451968 AGAC
1 AGAC
226451972 TTCTTTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:226454048 original size:29 final size:29
Alignment explanation
Indices: 226454016--226454147 Score: 228
Period size: 29 Copynumber: 4.6 Consensus size: 29
226454006 CGTTAACCGA
226454016 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
226454045 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
* *
226454074 GCACTATGTGTGCGAAATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
226454103 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
226454132 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
226454148 TTTTTCAACA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATCGAG
Found at i:226454055 original size:58 final size:58
Alignment explanation
Indices: 226453984--226454146 Score: 204
Period size: 58 Copynumber: 2.8 Consensus size: 58
226453974 CGAATGATTA
* * *
226453984 GAGGCACTGTGTGTGC-AAATTCCGTTAACCGA-GCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAAA-TCAG-TAACCGAGGCACTATGTGTGCGAAATCAGTAATC
* * *
226454042 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAAATCAGTAATT
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAAATCAGTAATC
* ** *
226454100 GAGGCACTATGTGTGCGAGATCAGTAATTGAGGCACTGTGTGTGCGA
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGA
226454147 GTTTTTCAAC
Statistics
Matches: 95, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 6 0.06
58 87 0.92
59 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (58 bp):
GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAAATCAGTAATC
Found at i:226454085 original size:87 final size:87
Alignment explanation
Indices: 226453984--226454147 Score: 242
Period size: 87 Copynumber: 1.9 Consensus size: 87
226453974 CGAATGATTA
* *
226453984 GAGGCACTGTGTGTGC-AAATTCCGTTAACCGA-GCACTATGTGTGCGAGATCAGTAATCGAGGC
1 GAGGCACTATGTGTGCGAAA-TCAG-TAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGC
226454047 ACTATGTGTGCGAGATCAGTAATC
64 ACTATGTGTGCGAGATCAGTAATC
** *
226454071 GAGGCACTATGTGTGCGAAATCAGTAATTGAGGCACTATGTGTGCGAGATCAGTAATTGAGGCAC
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
*
226454136 TGTGTGTGCGAG
66 TATGTGTGCGAG
226454148 TTTTTCAACA
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
86 5 0.07
87 61 0.88
88 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (87 bp):
GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
TATGTGTGCGAGATCAGTAATC
Found at i:226457710 original size:49 final size:49
Alignment explanation
Indices: 226457646--226457907 Score: 479
Period size: 49 Copynumber: 5.3 Consensus size: 49
226457636 TACATATATG
226457646 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
* *
226457695 TGTGATGAGGCCTAATGACCGATGTGATGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
226457744 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
* *
226457793 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATG
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
*
226457842 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
226457891 TGTGATGAGGCCTAATG
1 TGTGATGAGGCCTAATG
226457908 ACCAATGTAA
Statistics
Matches: 204, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 204 1.00
ACGTcount: A:0.27, C:0.10, G:0.34, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
Found at i:226458061 original size:37 final size:37
Alignment explanation
Indices: 226458018--226458095 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
226458008 GTTCCGGGCG
226458018 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
226458055 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
226458092 AGAC
1 AGAC
226458096 TTCTTTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:226460170 original size:29 final size:29
Alignment explanation
Indices: 226460138--226460269 Score: 228
Period size: 29 Copynumber: 4.6 Consensus size: 29
226460128 CGTTAACCGA
226460138 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
226460167 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
* *
226460196 GCACTATGTGTGCGAAATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
226460225 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
226460254 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
226460270 TTTTTCAACA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATCGAG
Found at i:226460177 original size:58 final size:58
Alignment explanation
Indices: 226460106--226460268 Score: 204
Period size: 58 Copynumber: 2.8 Consensus size: 58
226460096 CGAATGATTA
* * *
226460106 GAGGCACTGTGTGTGC-AAATTCCGTTAACCGA-GCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAAA-TCAG-TAACCGAGGCACTATGTGTGCGAAATCAGTAATC
* * *
226460164 GAGGCACTATGTGTGCGAGATCAGTAATCGAGGCACTATGTGTGCGAAATCAGTAATT
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAAATCAGTAATC
* ** *
226460222 GAGGCACTATGTGTGCGAGATCAGTAATTGAGGCACTGTGTGTGCGA
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGA
226460269 GTTTTTCAAC
Statistics
Matches: 95, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 6 0.06
58 87 0.92
59 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (58 bp):
GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAAATCAGTAATC
Found at i:226460207 original size:87 final size:87
Alignment explanation
Indices: 226460106--226460269 Score: 242
Period size: 87 Copynumber: 1.9 Consensus size: 87
226460096 CGAATGATTA
* *
226460106 GAGGCACTGTGTGTGC-AAATTCCGTTAACCGA-GCACTATGTGTGCGAGATCAGTAATCGAGGC
1 GAGGCACTATGTGTGCGAAA-TCAG-TAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGC
226460169 ACTATGTGTGCGAGATCAGTAATC
64 ACTATGTGTGCGAGATCAGTAATC
** *
226460193 GAGGCACTATGTGTGCGAAATCAGTAATTGAGGCACTATGTGTGCGAGATCAGTAATTGAGGCAC
1 GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
*
226460258 TGTGTGTGCGAG
66 TATGTGTGCGAG
226460270 TTTTTCAACA
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
86 5 0.07
87 61 0.88
88 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (87 bp):
GAGGCACTATGTGTGCGAAATCAGTAACCGAGGCACTATGTGTGCGAGATCAGTAATCGAGGCAC
TATGTGTGCGAGATCAGTAATC
Found at i:226463833 original size:49 final size:49
Alignment explanation
Indices: 226463769--226464029 Score: 470
Period size: 49 Copynumber: 5.3 Consensus size: 49
226463759 TACATATATG
226463769 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
* *
226463818 TGTGATGAGGCCTAATGACCGATGTGATGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
226463867 TGTGATGAGGCCTAATGGCCGATGT-GTGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
* *
226463915 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATG
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
*
226463964 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
226464013 TGTGATGAGGCCTAATG
1 TGTGATGAGGCCTAATG
226464030 ACCAATGTAA
Statistics
Matches: 202, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 47 0.23
49 155 0.77
ACGTcount: A:0.27, C:0.10, G:0.34, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATA
Found at i:226463937 original size:97 final size:98
Alignment explanation
Indices: 226463769--226464037 Score: 495
Period size: 97 Copynumber: 2.8 Consensus size: 98
226463759 TACATATATG
226463769 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
226463834 GACCGATGTGATGAACGTGAAAGTGTATGTATA
66 GACCGATGTGATGAACGTGAAAGTGTATGTATA
226463867 TGTGATGAGGCCTAATGGCCGATGT-GTGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
* *
226463931 GGCCGATGTGATGAACGTGAAAGTGTATGTATG
66 GACCGATGTGATGAACGTGAAAGTGTATGTATA
*
226463964 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
*
226464029 GACCAATGT
66 GACCGATGT
226464038 AAAATATATG
Statistics
Matches: 165, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
97 95 0.58
98 70 0.42
ACGTcount: A:0.28, C:0.10, G:0.33, T:0.29
Consensus pattern (98 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
GACCGATGTGATGAACGTGAAAGTGTATGTATA
Found at i:226464064 original size:146 final size:146
Alignment explanation
Indices: 226463769--226464041 Score: 440
Period size: 146 Copynumber: 1.9 Consensus size: 146
226463759 TACATATATG
*
226463769 TGTGATGAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
* * ** *
226463834 GACCGATGTGATGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGTGAACG
66 GACCGATGTGATGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCAATGTGAAAACA
*
226463899 TGAAAGTGTATGTATA
131 TGAAAGTGTATGCATA
*
226463915 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATGTGTGATGAGGCCTAAT
1 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
* * *
226463980 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCAATGT-AAAA
66 GACCGATGTGATGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCAATGTGAAAA
226464042 TATATGTGTG
Statistics
Matches: 118, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
145 2 0.02
146 116 0.98
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.29
Consensus pattern (146 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
GACCGATGTGATGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCAATGTGAAAACA
TGAAAGTGTATGCATA
Found at i:226464078 original size:146 final size:146
Alignment explanation
Indices: 226463782--226464079 Score: 402
Period size: 146 Copynumber: 2.0 Consensus size: 146
226463772 GATGAGGCCT
*
226463782 AATGGCCGATGTGGTGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCGATGTGATG
1 AATGGCCGATGTGATGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCGATGTGATG
* * ** * *
226463847 AACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGTGAACGTGAAAGTGTATGT
66 AACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCAATGTGAAAACATGAAAGTGTATGC
* * *
226463912 ATATGTGATGAGGCCT
131 ATATGTGATAAAGCCG
* * *
226463928 AATGGCCGATGTGATGAACGTGAAAGTGTATGTATGTGTGATGAGGCCTAATGGCCGATGTGGTG
1 AATGGCCGATGTGATGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCGATGTGATG
* * **
226463993 AATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCAATGT-AAAATAT-ATGTGTGATAT
66 AACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCAATGTGAAAACATGA-AAGTG-TAT
*
226464056 GCATATGTGGTAAAGCCG
129 GCATATGTGATAAAGCCG
226464074 AATGGC
1 AATGGC
226464080 TAATGTGAAT
Statistics
Matches: 132, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
144 1 0.01
145 6 0.05
146 125 0.95
ACGTcount: A:0.29, C:0.10, G:0.32, T:0.29
Consensus pattern (146 bp):
AATGGCCGATGTGATGAACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCGATGTGATG
AACGTGAAAGTGTATGTATATGTGATGAGGCCTAATGACCAATGTGAAAACATGAAAGTGTATGC
ATATGTGATAAAGCCG
Found at i:226468247 original size:29 final size:29
Alignment explanation
Indices: 226468214--226468315 Score: 168
Period size: 29 Copynumber: 3.5 Consensus size: 29
226468204 GTGACGAGAT
*
226468214 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
**
226468243 TGGCACTGGGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
226468272 TGGCACTAAGTGTGCATGCCGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
226468301 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
226468316 GAGCTCGAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:226468344 original size:58 final size:58
Alignment explanation
Indices: 226468210--226468336 Score: 159
Period size: 58 Copynumber: 2.2 Consensus size: 58
226468200 TACGGTGACG
* ** *
226468210 AGAT-TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGGGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCCGGAAAAATATGGCACTAAGTGTGCATGCTCGAA
* *
226468267 ATATATGGCACTAAGTGTGCATGCCGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCCGGAAAAATATGGCACTAAGTGTGC-ATGCTCGAA
* *
226468325 GGGTATGGCACT
1 AGATATGGCACT
226468337 GTGTGTGCGG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
57 3 0.05
58 55 0.93
59 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.24
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCCGGAAAAATATGGCACTAAGTGTGCATGCTCGAA
Found at i:226469872 original size:39 final size:39
Alignment explanation
Indices: 226469813--226469934 Score: 217
Period size: 39 Copynumber: 3.1 Consensus size: 39
226469803 TTGGGGTGTT
226469813 ACATAGCCTGCGGACCTGAAGTCCGGATATAATTCCAGC
1 ACATAGCCTGCGGACCTGAAGTCCGGATATAATTCCAGC
* *
226469852 ACATAGCCTGCGGACTTGAAGTTCGGATATAATTCCAGC
1 ACATAGCCTGCGGACCTGAAGTCCGGATATAATTCCAGC
*
226469891 ACATAGCCTGCGGACCTGAAGTCCGGATATAATTTCAGC
1 ACATAGCCTGCGGACCTGAAGTCCGGATATAATTCCAGC
226469930 ACATA
1 ACATA
226469935 CAATTATGAT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (39 bp):
ACATAGCCTGCGGACCTGAAGTCCGGATATAATTCCAGC
Found at i:226471783 original size:40 final size:40
Alignment explanation
Indices: 226471724--226471904 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
226471714 CATTTGAATG
*
226471724 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
226471764 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
226471804 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
226471844 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
226471884 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
226471905 AAACTTGGGT
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 116 0.90
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:226479804 original size:40 final size:40
Alignment explanation
Indices: 226479745--226479925 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
226479735 CATTTGAATG
*
226479745 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
226479785 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
226479825 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
226479865 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
226479905 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
226479926 AAACTTGGGT
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 116 0.90
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:226488403 original size:2 final size:2
Alignment explanation
Indices: 226488396--226488423 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
226488386 CCCAAAATAC
226488396 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
226488424 GCCAAACACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:226488856 original size:39 final size:39
Alignment explanation
Indices: 226488797--226488933 Score: 238
Period size: 39 Copynumber: 3.5 Consensus size: 39
226488787 ATTTAAGCTT
* *
226488797 GGATATAATTCCGGCTCATAGCCTGCGGACCTGAAGTCC
1 GGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
*
226488836 GGATAAAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
1 GGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
226488875 GGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
1 GGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
*
226488914 GGATATAATTTCAGCACATA
1 GGATATAATTCCAGCACATA
226488934 CAATTATGAT
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (39 bp):
GGATATAATTCCAGCACATAGCCTGCGGACCTGAAGTCC
Found at i:226493314 original size:46 final size:45
Alignment explanation
Indices: 226493240--226493497 Score: 190
Period size: 46 Copynumber: 5.6 Consensus size: 45
226493230 ATCGATGCCG
* * * *
226493240 TGTCCCAAACAGGTCTTACACT-GACACATGTAACCGT-GCTGATGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT--CCGTAGCCGATGCA
*
226493286 TGTCCCAGACATGTCTTACACTAGCACATCTCC-TAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCCGTAGCCGATGCA
* * *
226493330 TGTCCCAGACATGTCTGACATTGGCTAACATCT-CG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC--ACATCTCCGTA-GCCGATGCA
* * * * *
226493376 TGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTAGCACATC-T-CCGTAGCCGATGCA
* *
226493422 TGTCCCAGACATGTCTTACACTAGC-CCTCGTCTC-AATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTAGCACATC-TC-CGTA-GCCGATG-CA
* *
226493469 TGTCCCATACATGGTCTTACACTGGCACA
1 TGTCCCAGACAT-GTCTTACACTAGCACA
226493498 CAAATCTCAT
Statistics
Matches: 172, Mismatches: 24, Indels: 29
0.76 0.11 0.13
Matches are distributed among these distances:
43 3 0.02
44 33 0.19
45 4 0.02
46 105 0.61
47 14 0.08
48 12 0.07
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCCGTAGCCGATGCA
Found at i:226496083 original size:46 final size:46
Alignment explanation
Indices: 226496016--226496190 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
226496006 TGTAACCCGC
226496016 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
226496062 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * * * **
226496112 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
226496155 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
226496191 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 25 0.23
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:226496132 original size:93 final size:93
Alignment explanation
Indices: 226496024--226496194 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
226496014 GCCCATAAGT
* **
226496024 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
226496089 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
226496117 GAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
226496182 CGAGTTCGGATGC
66 CGAGCTCGGATGC
226496195 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:226496782 original size:20 final size:18
Alignment explanation
Indices: 226496748--226496784 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
226496738 GCAACTCATA
226496748 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
226496766 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
226496785 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:226499183 original size:40 final size:40
Alignment explanation
Indices: 226499138--226499305 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
226499128 CGGAATATAA
226499138 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
226499178 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
226499218 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
226499258 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
226499298 CCGGATAT
1 CCGGATAT
226499306 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:226499288 original size:80 final size:80
Alignment explanation
Indices: 226499154--226499303 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
226499144 ATAATCACGT
*
226499154 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
226499218 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
226499234 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
226499297 CCCGGAT
64 CCCGGAT
226499304 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:226507196 original size:40 final size:40
Alignment explanation
Indices: 226507151--226507317 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
226507141 CGGAATATAA
226507151 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
226507191 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
226507231 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
226507271 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
226507310 CCGGATAT
1 CCGGATAT
226507318 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.87
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:226507301 original size:80 final size:79
Alignment explanation
Indices: 226507167--226507315 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
226507157 ATAATCACGT
* *
226507167 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
226507232 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
226507247 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
226507310 CCGGAT
64 CCGGAT
226507316 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:226518917 original size:40 final size:39
Alignment explanation
Indices: 226518872--226519037 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
226518862 CGGAATATAA
226518872 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
226518912 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
226518951 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
226518991 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
226519030 CCGGATAT
1 CCGGATAT
226519038 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:226518994 original size:79 final size:79
Alignment explanation
Indices: 226518888--226519037 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
226518878 ATAATCACGT
*
226518888 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
226518951 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
226518967 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
226519032 GGATAT
66 GGATAT
226519038 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:226526921 original size:40 final size:39
Alignment explanation
Indices: 226526876--226527041 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
226526866 CGGAATATAA
226526876 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
226526916 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
226526955 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
226526995 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
226527034 CCGGATAT
1 CCGGATAT
226527042 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:226526998 original size:79 final size:79
Alignment explanation
Indices: 226526892--226527041 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
226526882 ATAATCACGT
*
226526892 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
226526955 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
226526971 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
226527036 GGATAT
66 GGATAT
226527042 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:226534994 original size:40 final size:39
Alignment explanation
Indices: 226534883--226535033 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
226534873 TTAATCACGT
* * *
226534883 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
226534923 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
226534963 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
226535003 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
226535034 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:226535017 original size:80 final size:79
Alignment explanation
Indices: 226534883--226535033 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
226534873 TTAATCACGT
*
226534883 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
226534948 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
226534963 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
226535026 CCGGATAT
64 CCGGATAT
226535034 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:226539681 original size:39 final size:40
Alignment explanation
Indices: 226539562--226539750 Score: 185
Period size: 39 Copynumber: 4.8 Consensus size: 40
226539552 GGATATAACG
* **
226539562 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG--TTA-TA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
226539599 GACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 -ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
226539640 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
226539679 ACTCGCACGAATGCCTTC-GGA-TCTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGACT-TAGCCCGGATTTAGTA
*
226539718 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
226539751 CATCATTCAA
Statistics
Matches: 124, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 30 0.24
39 51 0.41
40 40 0.32
41 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:226539696 original size:79 final size:79
Alignment explanation
Indices: 226539569--226539750 Score: 223
Period size: 78 Copynumber: 2.3 Consensus size: 79
226539559 ACGACTCGCT
**
226539569 CAAATGCCTTCGGGACAAAGCCCGG-TTATAGACTCGCACGAATGCCTTCGGGA-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGACTCGCACGAATGCCTTC-GGATC-TAACCCGG
* *
226539632 GTTTAGTAACTT-GCA
64 ATATAGTAACTTAGCA
**
226539647 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTA-ACTCGCACGAATGCCTTCGGATCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTA-TAGACTCGCACGAATGCCTTCGGATCTAACCCGG
*
226539710 ATATAGTCACTTAGCA
64 ATATAGTAACTTAGCA
226539726 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
226539751 CATCATTCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 11
0.83 0.06 0.10
Matches are distributed among these distances:
77 8 0.09
78 41 0.45
79 40 0.44
80 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGACTCGCACGAATGCCTTCGGATCTAACCCGGAT
ATAGTAACTTAGCA
Found at i:226544908 original size:40 final size:40
Alignment explanation
Indices: 226544863--226545030 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
226544853 CGGAATATAA
226544863 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
226544903 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
226544943 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
226544983 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
226545023 CCGGATAT
1 CCGGATAT
226545031 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:226545013 original size:80 final size:80
Alignment explanation
Indices: 226544879--226545028 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
226544869 ATAACCACGT
* *
226544879 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
226544944 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
226544959 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
226545022 CCCGGAT
64 CCCGGAT
226545029 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:226552900 original size:40 final size:40
Alignment explanation
Indices: 226552855--226553021 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
226552845 CGGAATATAA
226552855 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
226552895 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
226552935 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
226552975 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
226553014 CCGGATAT
1 CCGGATAT
226553022 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:226558838 original size:39 final size:39
Alignment explanation
Indices: 226558730--226558916 Score: 161
Period size: 39 Copynumber: 4.8 Consensus size: 39
226558720 GGATATAACG
* *
226558730 ACTCGCTCAAATGCCTTCGGGAC-AAGCCCGG-TTATAGT-
1 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-TAGTA
* * *
226558768 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTAGTA
* *
226558808 ACTTGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTA
* * * * *
226558847 ACTCGCACGAATGCCTT--GGATCTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGCT-TAGCCCGGATTTAGTA
* *
226558885 ACTTAGCACAAA-GCCTTCGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGCTTAGCCCGGA
226558917 CATCATTCAA
Statistics
Matches: 121, Mismatches: 21, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
37 3 0.02
38 40 0.33
39 55 0.45
40 23 0.19
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTAGTA
Found at i:226558914 original size:77 final size:78
Alignment explanation
Indices: 226558737--226558916 Score: 201
Period size: 77 Copynumber: 2.3 Consensus size: 78
226558727 ACGACTCGCT
* *
226558737 CAAATGCCTTCGGGAC-AAGCCCGG-TTATAGT-ACTCGCACGAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTC-GGACTTAACCCG
* *
226558799 GGTTTAGTAACTTGCA
63 GATATAGTAACTTGCA
* **
226558815 CAAATGCCTTCGGGCTTAGCCCGGATTTATTAACTCGCACGAATGCCTT-GGA-TCTAGTCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGACT-TAACCCGGA
*
226558878 TATAGTCACTTAGCA
65 TATAGTAACTT-GCA
226558893 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGA
226558917 CATCATTCAA
Statistics
Matches: 88, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
76 1 0.01
77 40 0.45
78 28 0.32
79 19 0.22
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGACTTAACCCGGAT
ATAGTAACTTGCA
Found at i:226562659 original size:49 final size:49
Alignment explanation
Indices: 226562529--226563029 Score: 809
Period size: 49 Copynumber: 10.3 Consensus size: 49
226562519 ATGCATGAGA
226562529 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
226562578 TATATAATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTG
1 TATAT-ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
226562628 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
226562677 TGTATATAT-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
226562725 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
226562774 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
226562823 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT-TGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
226562871 TATATAT-TGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
226562919 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
226562968 --TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
226563015 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
226563030 TCCCGAAGGT
Statistics
Matches: 426, Mismatches: 20, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
47 82 0.19
48 75 0.18
49 221 0.52
50 48 0.11
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:226562716 original size:97 final size:98
Alignment explanation
Indices: 226562529--226563029 Score: 809
Period size: 96 Copynumber: 5.2 Consensus size: 98
226562519 ATGCATGAGA
*
226562529 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAATATGTGATA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTAT-ATATGTGATA
*
226562594 AGGCCTAATGGTCGATGTGATGAATGTGAAAGTG
65 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
226562628 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATAT-TGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
226562692 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
226562725 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTGTGTATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
226562790 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
226562823 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT-TGAAAGTGTATATAT-TGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
* *
226562886 GGCCTAATGGCCGATGTGATGAATGAGAAGGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
226562919 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTGTATATATGTGATAG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
* * * * * *
226562982 GGCCGAGTGGCCAAAGTGATGGATGTGGAAGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
226563015 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
226563030 TCCCGAAGGT
Statistics
Matches: 379, Mismatches: 20, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
94 10 0.03
95 8 0.02
96 113 0.30
97 113 0.30
98 82 0.22
99 53 0.14
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (98 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:226562797 original size:146 final size:147
Alignment explanation
Indices: 226562531--226563029 Score: 816
Period size: 146 Copynumber: 3.4 Consensus size: 147
226562521 GCATGAGATA
226562531 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAATATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-ATATGTGATAAG
* *
226562596 GCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
65 GCCTAATGGCCGATGTGATGAATGTAAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
226562661 GATGAATGTGAAAGTGTG
130 GATGAATGTGAAAGTGTG
226562679 TATATAT-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
*
226562743 CCTAATGGCCGATGTGATGAATGTAAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 CCTAATGGCCGATGTGATGAATGTAAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
226562808 ATGAATGTGAAAGTGTG
131 ATGAATGTGAAAGTGTG
226562825 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT-TGAAAGTGTATATAT-TGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
* *
226562888 CCTAATGGCCGATGTGATGAATG-AGAAGGTGTATATATATGTGATAAGGCCTAATGGCCAATGT
66 CCTAATGGCCGATGTGATGAATGTA-AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
226562952 GATGAATGTGAAA--GTG
130 GATGAATGTGAAAGTGTG
* * * * * * *
226562968 TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAAGTGTATA-A-ATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
226563030 TCCCGAAGGT
Statistics
Matches: 334, Mismatches: 13, Indels: 13
0.93 0.04 0.04
Matches are distributed among these distances:
143 45 0.13
144 12 0.04
145 82 0.25
146 114 0.34
147 74 0.22
148 7 0.02
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (147 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTAAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTG
Found at i:226565103 original size:28 final size:28
Alignment explanation
Indices: 226565057--226565125 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
226565047 TTTAAAACCC
*
226565057 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
226565084 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
226565112 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
226565126 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:226566775 original size:20 final size:20
Alignment explanation
Indices: 226566752--226566789 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
226566742 CACATCCAAA
*
226566752 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
226566772 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
226566790 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:226573109 original size:28 final size:28
Alignment explanation
Indices: 226573063--226573131 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
226573053 TTTAAAACCC
*
226573063 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
226573090 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
226573118 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
226573132 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:226574541 original size:20 final size:20
Alignment explanation
Indices: 226574518--226574555 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
226574508 CACATCCAAA
*
226574518 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
226574538 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
226574556 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:226574669 original size:37 final size:37
Alignment explanation
Indices: 226574626--226574714 Score: 162
Period size: 37 Copynumber: 2.4 Consensus size: 37
226574616 CTGTAGCCCT
226574626 TTTCATATTTCATATTTCATAATACTGGGCCGAAGCC
1 TTTCATATTTCATATTTCATAATACTGGGCCGAAGCC
226574663 TTTCATATTTCATATTTCATAATACTGGGCCGAAGCC
1 TTTCATATTTCATATTTCATAATACTGGGCCGAAGCC
*
226574700 TTT-TTATTTCATATT
1 TTTCATATTTCATATT
226574715 ACTGGGCCGA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
36 11 0.22
37 40 0.78
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.44
Consensus pattern (37 bp):
TTTCATATTTCATATTTCATAATACTGGGCCGAAGCC
Found at i:226574717 original size:29 final size:29
Alignment explanation
Indices: 226574675--226574731 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
226574665 TCATATTTCA
226574675 TATTTCATAATACTGGGCCGAAGCCTTTT
1 TATTTCATAATACTGGGCCGAAGCCTTTT
*
226574704 TATTTCATATTACTGGGCCGAAGCCTTT
1 TATTTCATAATACTGGGCCGAAGCCTTT
226574732 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.39
Consensus pattern (29 bp):
TATTTCATAATACTGGGCCGAAGCCTTTT
Found at i:226574987 original size:24 final size:24
Alignment explanation
Indices: 226574923--226575017 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
226574913 GCTTTATCAT
*
226574923 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
226574948 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
226574971 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
226574995 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
226575018 TCACTTCTCC
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
23 17 0.27
24 39 0.61
25 8 0.12
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:226575013 original size:48 final size:48
Alignment explanation
Indices: 226574923--226575016 Score: 138
Period size: 47 Copynumber: 2.0 Consensus size: 48
226574913 GCTTTATCAT
*
226574923 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCA
*
226574971 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTT
226575017 TTCACTTCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 21 0.50
48 21 0.50
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCA
Found at i:226575092 original size:20 final size:20
Alignment explanation
Indices: 226575067--226575126 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
226575057 TATGATTACC
226575067 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
226575087 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
226575107 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
226575127 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:226575097 original size:11 final size:11
Alignment explanation
Indices: 226575067--226575121 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
226575057 TATGATTACC
226575067 TCATGTGCATA
1 TCATGTGCATA
*
226575078 TCA--TACATA
1 TCATGTGCATA
226575087 TCATGTGCATA
1 TCATGTGCATA
* *
226575098 TCA--TACATT
1 TCATGTGCATA
226575107 TCATGTGCATA
1 TCATGTGCATA
226575118 TCAT
1 TCAT
226575122 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:226575201 original size:25 final size:25
Alignment explanation
Indices: 226575169--226575216 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
226575159 ATACATAAAC
* * *
226575169 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
226575194 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
226575217 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:226582780 original size:31 final size:30
Alignment explanation
Indices: 226582728--226582822 Score: 163
Period size: 31 Copynumber: 3.1 Consensus size: 30
226582718 CCTTTTCATA
226582728 TTTCATATTTCATAATACTGGGCCGAAGCC
1 TTTCATATTTCATAATACTGGGCCGAAGCC
226582758 TTTCATATTTCATACATACTGGGCCGAAGCC
1 TTTCATATTTCATA-ATACTGGGCCGAAGCC
*
226582789 TTTTCATATTTCATATTACTGGGCCGAAGCC
1 -TTTCATATTTCATAATACTGGGCCGAAGCC
226582820 TTT
1 TTT
226582823 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
30 17 0.27
31 31 0.50
32 14 0.23
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (30 bp):
TTTCATATTTCATAATACTGGGCCGAAGCC
Found at i:226583078 original size:24 final size:24
Alignment explanation
Indices: 226583014--226583108 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
226583004 GCTTTATCAT
*
226583014 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
226583039 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
226583062 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
226583086 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
226583109 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
23 17 0.27
24 39 0.61
25 8 0.12
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:226583104 original size:48 final size:48
Alignment explanation
Indices: 226583014--226583107 Score: 138
Period size: 47 Copynumber: 2.0 Consensus size: 48
226583004 GCTTTATCAT
*
226583014 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCA
*
226583062 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTT
226583108 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 21 0.50
48 21 0.50
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCA
Found at i:226583184 original size:20 final size:20
Alignment explanation
Indices: 226583159--226583218 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
226583149 TATGATTACC
226583159 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
226583179 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
226583199 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
226583219 CATATTTATC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:226583189 original size:11 final size:11
Alignment explanation
Indices: 226583159--226583213 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
226583149 TATGATTACC
226583159 TCATGTGCATA
1 TCATGTGCATA
*
226583170 TCA--TACATA
1 TCATGTGCATA
226583179 TCATGTGCATA
1 TCATGTGCATA
* *
226583190 TCA--TACATT
1 TCATGTGCATA
226583199 TCATGTGCATA
1 TCATGTGCATA
226583210 TCAT
1 TCAT
226583214 ACATACATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:226583292 original size:25 final size:25
Alignment explanation
Indices: 226583260--226583307 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
226583250 ATACATAAAC
* * *
226583260 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
226583285 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
226583308 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:226585274 original size:2 final size:2
Alignment explanation
Indices: 226585267--226585295 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
226585257 GTTGACAATG
226585267 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
226585296 ATAGTATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:226586452 original size:14 final size:14
Alignment explanation
Indices: 226586435--226586463 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
226586425 TCCTCCCCTC
226586435 TCCCCTCTCCTTTT
1 TCCCCTCTCCTTTT
226586449 TCCCCTCTCCTTTT
1 TCCCCTCTCCTTTT
226586463 T
1 T
226586464 TTTTTTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (14 bp):
TCCCCTCTCCTTTT
Found at i:226587035 original size:13 final size:14
Alignment explanation
Indices: 226587011--226587041 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
226587001 AGCATTATTA
226587011 ATATTAATATATGT
1 ATATTAATATATGT
226587025 ATATT-ATATATGT
1 ATATTAATATATGT
226587038 ATAT
1 ATAT
226587042 ATTCATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATATTAATATATGT
Found at i:226587264 original size:12 final size:12
Alignment explanation
Indices: 226587243--226587337 Score: 51
Period size: 12 Copynumber: 8.1 Consensus size: 12
226587233 TTCTTAATAT
226587243 TATATT-TTATA
1 TATATTATTATA
226587254 TATATTATTATA
1 TATATTATTATA
*
226587266 TAT-TT-TAATA
1 TATATTATTATA
226587276 T-TATTAGTTATA
1 TATATTA-TTATA
* *
226587288 T-TTTTCTT-TCA
1 TATATTATTAT-A
226587299 TACTATTA-TATA
1 TA-TATTATTATA
226587311 TATATATATATATA
1 TATAT-TAT-TATA
* *
226587325 TCTAATATTATA
1 TATATTATTATA
226587337 T
1 T
226587338 GGTATATTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 21
0.69 0.09 0.22
Matches are distributed among these distances:
9 1 0.02
10 8 0.12
11 15 0.23
12 27 0.42
13 7 0.11
14 7 0.11
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (12 bp):
TATATTATTATA
Found at i:226587276 original size:8 final size:10
Alignment explanation
Indices: 226587240--226587281 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 10
226587230 AAGTTCTTAA
*
226587240 TATTATATTT
1 TATTATATAT
226587250 TA-TATATAT
1 TATTATATAT
226587259 TATTATATAT
1 TATTATATAT
226587269 T-TTA-ATAT
1 TATTATATAT
226587277 TATTA
1 TATTA
226587282 GTTATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 5 0.17
9 14 0.48
10 10 0.34
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TATTATATAT
Found at i:226600082 original size:71 final size:71
Alignment explanation
Indices: 226599961--226600094 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
226599951 GTTTTCCAAG
* * *
226599961 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
226600026 GTTTCA
66 GTTTCA
* * *
226600032 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
226600095 CTACTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:226600206 original size:159 final size:160
Alignment explanation
Indices: 226599870--226600409 Score: 980
Period size: 159 Copynumber: 3.4 Consensus size: 160
226599860 TTGTTTTTTC
226599870 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
226599935 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
226600000 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
*
226600030 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
226600095 CTACTTTTTAATTCATGTTTTCCAA-AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
226600159 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
*
226600189 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
* * *
226600254 CTGCTTTTTAGTTCATG-TTTCCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
226600318 GACACGTTGAGG-AATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
* * *
226600347 C-AAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAATT
1 CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
226600410 CCTATTAAAT
Statistics
Matches: 371, Mismatches: 8, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
157 58 0.16
158 25 0.07
159 199 0.54
160 89 0.24
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (160 bp):
CAAAAATCAACTCATATCGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTACTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTAATTTCAATTTATGTTT
Found at i:226600241 original size:71 final size:71
Alignment explanation
Indices: 226600119--226600253 Score: 216
Period size: 71 Copynumber: 1.9 Consensus size: 71
226600109 ATGTTTTCCA
* * *
226600119 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTA
226600184 TGTTTC
66 TGTTTC
* * *
226600190 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
226600254 CTGCTTTTTA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (71 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTA
TGTTTC
Found at i:226600398 original size:69 final size:70
Alignment explanation
Indices: 226600279--226600529 Score: 274
Period size: 74 Copynumber: 3.5 Consensus size: 70
226600269 TGTTTCCAAG
* * * *
226600279 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-AATTTCAATT-TA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTCAATTCTA
226600342 TGTTTC
66 T-TTTC
* * *
226600348 AAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAATTCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTCAATT-CT
*
226600413 ATTAAATC
65 ATT--TTC
* * * *
226600421 TAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAAATTC
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTC-AATTC
226600486 TATTTTC
64 TATTTTC
* * *
226600493 AAAAGTTAATTCATATTGTGA-AAGGTGAGTTGAGCCT
1 AAAA-TCAACTCATATTGCGAGAA-GTGAGTTGAGCCT
226600530 TTAATTTTCG
Statistics
Matches: 155, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
69 44 0.28
70 10 0.06
71 7 0.05
72 31 0.20
73 2 0.01
74 57 0.37
75 4 0.03
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGGTAATTTCAATTCTA
TTTTC
Found at i:226600586 original size:67 final size:65
Alignment explanation
Indices: 226600475--226600716 Score: 272
Period size: 67 Copynumber: 3.6 Consensus size: 65
226600465 CGCTAAGGTA
* * * * *
226600475 TTTTCAAATTCTATTTTCAAAAGTTAATTCATATTGTGAAAGGTGAGTTGAGCCTTTAATTTTCG
1 TTTTCAAAATCTATTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCG
226600540 T
65 T
226600541 TTTTCAAAATCTACTTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTC
1 TTTTCAAAATCTA-TTTTCAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTC
226600606 GT
64 GT
* * *
226600608 TTCTCAAAATCTACTTTTCAAATTATTAACTCATGTTGCGAGAGGTGAGTTGAGCCTTTTAA-TT
1 TTTTCAAAATCTA-TTTTCAAA--ATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTTAATTT
*
226600672 TCTGC
62 TC-GT
** *
226600677 TTTT-AATTTCTATGTTTCAAAAATCAACCCATATTGCGAG
1 TTTTCAAAATCTAT-TTTC-AAAATCAACTCATATTGCGAG
226600717 GAATATGTTG
Statistics
Matches: 153, Mismatches: 16, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
66 12 0.08
67 84 0.55
68 45 0.29
69 12 0.08
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (65 bp):
TTTTCAAAATCTATTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGT
Found at i:226600681 original size:13 final size:13
Alignment explanation
Indices: 226600663--226600687 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
226600653 TGAGTTGAGC
226600663 CTTTTAATTTCTG
1 CTTTTAATTTCTG
226600676 CTTTTAATTTCT
1 CTTTTAATTTCT
226600688 ATGTTTCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.04, T:0.64
Consensus pattern (13 bp):
CTTTTAATTTCTG
Found at i:226602815 original size:40 final size:40
Alignment explanation
Indices: 226602749--226602915 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
226602739 AAATTGAATG
* * *
226602749 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
226602788 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
226602828 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
226602868 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
226602908 ATATCCGG
1 ATATCCGG
226602916 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:226606391 original size:40 final size:40
Alignment explanation
Indices: 226606325--226606491 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
226606315 AAATTGAATG
* * *
226606325 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
226606364 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
226606404 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
226606444 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
226606484 ATATCCGG
1 ATATCCGG
226606492 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:226610665 original size:39 final size:39
Alignment explanation
Indices: 226610535--226610695 Score: 231
Period size: 38 Copynumber: 4.2 Consensus size: 39
226610525 TGTGTATGAA
226610535 TGTGCGA-ATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGA-TGTGATATCCGGGCTAAGCCCGAAGGCAAT
226610574 TGTGC-AGAAT-TGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAG-ATGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
226610611 TGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGATGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
226610650 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGATGTGATATCCGGGCTAAG-CCCGAAGGCAAT
226610690 TGTGCG
1 TGTGCG
226610696 GGTTACATAA
Statistics
Matches: 112, Mismatches: 4, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
37 7 0.06
38 57 0.51
39 30 0.27
40 18 0.16
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGATGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:226610721 original size:39 final size:40
Alignment explanation
Indices: 226610552--226610724 Score: 166
Period size: 38 Copynumber: 4.5 Consensus size: 40
226610542 ATTGTGATAT
* *
226610552 CCGGGCTAAG-CCCGAAGGCAATTGTGCAGAATTG--ATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTGACATAA
*
226610590 CCGGGCTAAG-CCCGAAGGCAA-TGTGCGAGATATG--ATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAG-T-TGACATAA
** *
226610628 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTGACATAA
* * *
226610667 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTT-ACATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTGACATAA
*
226610706 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
226610725 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
36 2 0.02
37 8 0.07
38 49 0.41
39 41 0.34
40 20 0.17
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.21
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTGACATAA
Done.